Changes between Version 21 and Version 22 of Working Groups/TOP/TOP-User Quick Guide


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Timestamp:
2018-01-17T12:31:56+01:00 (3 years ago)
Author:
lovato
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  • Working Groups/TOP/TOP-User Quick Guide

    v21 v22  
    1 = TOP interface User Quick Guide (NEMO 4.0+) = 
     1= TOP interface User Quick Guide = 
     2The present Quick Guide applies to NEMO 4.0+ releases. 
     3 
    24=  = 
    35 
     
    4446A synthetic description of the TOP interface workflow is given below to summarize the steps involved in the computation of biogeochemical and physical trends and their time integration and outputs, by reporting also the principal Fortran subroutine herein involved. 
    4547 
     48[[BR]] 
     49 
    4650'''Model initialization (OPA_SRC/nemogcm.F90)''' 
    4751 
     
    5963 
    6064  ↳ call trc_sub_ini, setup substepping if {{{nn_dttrc /= 1}}} 
     65 
     66[[BR]] 
    6167 
    6268'''Time marching procedure (OPA_SRC/stp.F90)''' 
     
    291297[[BR]] 
    292298 
    293 In the case of more complex and articulated BGC model code infrastructure, like in the case of BFM (!http://www.bfm-community.eu/publications/bfmnemomanual_r1.0_201508.pdf), the compilation requires some additional features. 
     299The compilation of more articulated BGC model code & infrastructure, like in the case of BFM ([http://www.bfm-community.eu/publications/bfmnemomanual_r1.0_201508.pdf BFM-NEMO coupling manual]) requires some additional features. 
    294300 
    295301As before, let’s assume a coupled configuration name NEMO_MYBGC, but in this case MYBGC model repository has 3 different subfolders for biogeochemistry, named initialization, pelagic, and benthic, and a separate one named nemo_coupling that contains the modified MY_SRC routines. 
     
    319325Note that, the additional lines specific for the BGC model source and build paths, can be written into a separate file, e.g. named MYBGC.fcm, and then simply included in the cpp_NEMO_MYBGC.fcm as follow 
    320326{{{ 
    321 bld::tool::fppkeys  key_zdftke key_dynspg_ts key_iomput key_mpp_mpi key_top key_my_trc 
     327bld::tool::fppkeys  key_zdftke key_dynspg_ts key_iomput key_mpp_mpi key_top 
    322328inc <MYBGCPATH>/MYBGC.fcm 
    323329}}}