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Last edited [[Timestamp]]
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'''Author''' : Gurvan Madec & Matthieu Leclair
'''ticket''' : #663
'''Branch''' : [https://forge.ipsl.jussieu.fr/nemo/browser/branches/DEV_r1837_MLF DEV_r1837_MLF ]
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useful commands
{{{
* check out of NEMO directory:
svn co svn+ssh://gm@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/branches/DEV_r1837_MLF/NEMO
* commit :
svn ci -m "ticket: #663 blah_blah" list_of_file
}}}
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=== Description ===
Introduce the modified Leap-Frog -- Robert-Asselin filter (LF-RA) to fit the one presented in Leclair and Madec Ocean Modelling (2009). The scheme allows a exact conservation of the heat and salt contents when using variable volume thickness (key_vvl). The non-conservation of the standard LF-RA due to the time diffusion of the forcing through the filter. In the modified scheme the exact conservation is achieved by removing the forcing from the filter. Furthermore, the scheme allows to use a much smaller Asselin filter parameter (10^-4^ instead of 10^-1^) decreasing the damping effect of the LF-RA scheme, so that it is actually a quasi second order scheme.
The LF-RA flow chart of ''step'' is the one introduce in the trunk after the v3.1, to restore the key_vvl option. Its main characteristic is that the ''ssh'' is time-stepped first, followed immediately by the computation of the ''now'' vertical velocity (see figure below). [[BR]]
[[Image(NEW_LF_RA_FlowCart.jpg, 50%)]][[BR]]
Step routine flow chart, form Leclair and Madec (OM 2009).[[BR]]
This update is part of the LOCEAN.8 task (Update of the ocean physics) due by June 25th 2010.
The 3 main modifications concern :
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'''(1) The forcing terms'''. They are defined as a mean between time step n-1/2 and n+1/2
modules involved : sbc_oce.F90, sbcmod.F90, trasbc.F90, traqsr.F90, dynzdf....F90
[[Image(NEW_LF_RA.jpg, 50%)]][[BR]]
Illustration of forcing integration methods. Old formulation (top) and new formulation (bottom).
At each time a forcing term appears in the 3 time evolution equations solved in NEMO/OPA (ssh, dynamics and tracer). The mean of kt+1/2 and kt+1/2 has to be used in order to remove the largest source of divergence of two consecutive time step. Therefore, the surface module (including the sea-ice!) must now provide both kt+1/2 and kt-1/2 forcing fields, and all the module involving a forcing term have to be modified.
Note that TKE equation is solved with a two level time stepping scheme : no need of a before field for its forcing term (i.e. taum)
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'''sbc_oce.F90 :''' add "before" forcing fields (denoted by a '_b' sufix)
All ocean forcing components are involved, i.e. utau_b, vtau_b, qns_b, qsr_b, emp_b,and emps_b
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'''sbcmod.F90 :''' add the swap of surface fields and the read/write in the restart file.
Beginning of sbs routine, introduce the swap, but only for kt >= nit000+1. If no restart, the '_b' fields is known only at the end of the sbc calculation. Therefore we have choosen to regroup the setting of '_b' fields at nit000 at the end of sbc routine.
CAUTION : here the swap must be done at each kt, what ever the nn_fsbc value is. Otherwise the ocean forcing will be wrong.
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'''trasbc.F90''' : change in the heat and freshwater/salt fluxes
The thermohalin fluxes (qns, emp, emps) are now applied as the mean of 2 consecutive time-steps (kt+1/2 and kt-1/2). This involes the following changes : (1) incorporate the time mean of the forcing ; (2) put the IF-ELSE-ENDIF outside the DO-loop for vector optimisation ; (3) remove the key_zco optimisation (increase readability) as zco is less and less used ; (4) correct a bug in vvl case, where salt flux associated with freezing/melting were not taken into account.
CAUTION 1 : bug in the salt flux in key_vvl ===> modif in limsbc_2.F90 (emps becomes a salt flux in vvl,limsbc, limsbc_2 and CICE interface must be modified)
CAUTION 2 : bug in with no solar light penetration (ln_traqsr=.false.) ==> modif in trasbc : qns = qns + qsr.
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'''traqsr.F90 : ''' applied the solar heat flux (qsr) as the mean of 2 consecutive time-steps (kt+1/2 and kt-1/2)
CAUTION 1 : the case where the light penetration is provided by the bio-model ( i.e. lk_qsr_bio = ln_qsr_bio =.true. is not yet treated. It probably requires changes in p4zopt.F90 and trcopt.F90. Not completely obvious since this depends on the TOP time-stepping strategy.
CAUTION 2 : the thickness used in the penetration should be the mean of the two consecutive time step !
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'''dynzdf_exp.F90 : ''' applied the stress (utau, vtau) as the mean of 2 consecutive time-steps (kt+1/2 and kt-1/2)
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'''dynzdf_imp.F90 : ''' applied the stress (utau, vtau) as the mean of 2 consecutive time-steps (kt+1/2 and kt-1/2)
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'''sshwzv.F90 : ''' applied the freshwater flux (emp) as the mean of 2 consecutive time-steps (kt+1/2 and kt-1/2)
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'''(2) The Asselin filter''' remove the forcing from the filter (tranxt and sshwzv)
CAUTION : the sign of the correction applied to the asselin filter has to be checked.
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'''tranxt.F90 : ''' remove the forcing term from the Asselin filter
after the application of the classical Asselin filter, the part applied to the forcing term is removed :
at jk=1 : - atfp * rdt * ( qns_b - qns ) on temperature (vvl case)
at jk=1 : - atfp * rdt * ( emps_b - emps ) on salinity (vvl case)
if lk_vvl=F, the part applied to the concentration dilution term has also to be removed.
Solar penetration part :
CAUTION 1 : the case where the light penetration is provided by the bio-model ( i.e. lk_qsr_bio = ln_qsr_bio =.true. is not yet treated. It probably requires changes in p4zopt.F90 and trcopt.F90. Not completely obvious since this depends on the TOP time-stepping strategy.
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'''sshwzv.F90 : ''' a additional term appears in the filter (the last part of the RHS) :
sshn = ssha + atfp * ( sshb -2 sshn + ssha ) - atfp * rdt * ( emp_b - emp ) / rau0
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'''N.B. :''' We choose not to remove the momentum forcing from the Asselin time filter. Therefore dynnxt.F90 is not changed.
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'''(3) The semi-implicit hpg'''.
In tranxt.F90, for the semi-implicit hydrostatic pressure gradient, the coefficients are changed in order to take into account the Asselin filter parameter
time mean T and S for the semi implicit hpg computation was (ta+2*tn + tb) / 4 . It is now replaced by
rbcp*ta+(2-rbcp)*tn+rbcp*tb
with rbcp=(1+atfp)*(1+atfp*atfp) / 4, and atfp is the Asselin filter parameter.
The change extend further the stability limit of the time stepping scheme when ln_dynhpg_imp = T
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'''N.B.''' : Three key elements of the LF-RA scheme have already been implemented in former version of NEMO (v3.0 and v3.1). As a remainder, there are:
Forcing evaluation : the momentum and tracers forcing are evaluated at kt+1/2, no-more at kt. This is done in the fldread routine since v3.0
Flow chart : general structure has changed for key_vvl (variable volume or equivalently non-linear free surface) (v3.1). In particular the ssh equation is solved first together followed immediately by the computation of the now vertical velocity, so that wn is available to solve the tracer and the dynamics equations.
The enhanced vertical diffusion (evd) is no more a source of small divergence of two consecutive time step as the static instability is now tested on both before and now fields. See ticket #401.
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=== Pending issues ===
• correct the bug in limsbc, limsbc_2 and CICE interface (nned help from Met Office for the later)
• Do we need to remove the stress component from the filter in dynnxt?
• in vvl case : thickness weighted tracer in the time mean, do we need to compute and use a time mean thickness in the hpg computation?
• The associated changes in TOP are still unclear. A priori, in PISCES p4zopt.F90 should be modified. Nevertheless, the TOP time stepping strategy seems to be a forward in time scheme. If yes, then the evaluation of the forcing at kt+1/2 is an improvement (if not to say a bug fix!). If not, action is required...
• Check the consistency with the change planned in the emps field (switch to fsalt, a true salt flux).
• modification required in limsbc, limsbc_2 and CICE interface : conversion of emps into a salt flux (new name 'fsalt' ?)
• the modifications in trasbc will interfere with the new runoff scheme (see 2009WP/2009Stream3#Substream3.2:fromNEMOteamshort-term)
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=== Testing ===
Testing could consider (where appropriate) other configurations in addition to NVTK].
||NVTK Tested||!'''YES/NO!'''||
||Other model configurations||!'''YES/NO!'''||
||Processor configurations tested||[ Enter processor configs tested here ]||
||If adding new functionality please confirm that the [[BR]]New code doesn't change results when it is switched off [[BR]]and !''works!'' when switched on||!'''YES/NO/NA!'''||
(Answering UNSURE is likely to generate further questions from reviewers.)
'Please add further summary details here'
* Processor configurations tested
* etc
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=== Bit Comparability ===
||Does this change preserve answers in your tested standard configurations (to the last bit) ?||!'''YES/NO !'''||
||Does this change bit compare across various processor configurations. (1xM, Nx1 and MxN are recommended)||!'''YES/NO!'''||
||Is this change expected to preserve answers in all possible model configurations?||!'''YES/NO!'''||
||Is this change expected to preserve all diagnostics? [[BR]]!,,!''Preserving answers in model runs does not necessarily imply preserved diagnostics. !''||!'''YES/NO!'''||
If you answered !'''NO!''' to any of the above, please provide further details:
* Which routine(s) are causing the difference?
* Why the changes are not protected by a logical switch or new section-version
* What is needed to achieve regression with the previous model release (e.g. a regression branch, hand-edits etc). If this is not possible, explain why not.
* What do you expect to see occur in the test harness jobs?
* Which diagnostics have you altered and why have they changed?Please add details here........
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=== System Changes ===
||Does your change alter namelists?||!'''YES/NO !'''||
||Does your change require a change in compiler options?||!'''YES/NO !'''||
If any of these apply, please document the changes required here.......
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=== Resources ===
!''Please !''summarize!'' any changes in runtime or memory use caused by this change......!''
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=== IPR issues ===
||Has the code been wholly (100%) produced by NEMO developers staff working exclusively on NEMO?||!'''YES/ NO !'''||
If No:
* Identify the collaboration agreement details
* Ensure the code routine header is in accordance with the agreement, (Copyright/Redistribution etc).Add further details here if required..........