Changes between Version 18 and Version 19 of user/ctlod/NVTKpage

Timestamp:

2009-08-13T16:30:12+02:00 (15 years ago)

Author:

ctlod

Comment:

--

user/ctlod/NVTKpage

@@ -7 +7 @@
 The full documentation is attached at the end of this page.[[BR]]
 
-Context: [[BR]]
-the user made modifications in few modules of the NEMO code; he wants to check if these changes fit basic features such as the reproductibility, the restartability, or to check the global memory and/or the time consuming but also if results of the reference configurations ORCA2_LIM, GYRE and GYRE_LOBSTER are not modified.[[BR]]
+Context: NVTK can be usefull for 2 purposes slightly different[[BR]]
+ 1- the user made modifications in few modules of the NEMO code; he wants to check if these changes fit basic features such as the reproductibility, the restartability, or to check the global memory and/or the time consuming but also if results of the reference configurations ORCA2_LIM, GYRE and GYRE_LOBSTER are not modified.[[BR]]
+#2 the user has to do sensitivity experiments (optimisation, physics parameters... ) with one configuration, he will be able to decline as many directories as he needs under ./config/NVTK directory. Each directory can be asociated with a specific namelist named with the directory name as extension (namelist_EXP1 for instance)
 
 The NEMO Validation Tool Kit (NVTK hereinafter) has been built to allow the user to perform a set of validation tests simply and quickly in using few commands. 
@@ -17 +18 @@
 The user has to refer to the associated paper documentation to get details about the general organisation and scripts. [[BR]]
 
-'''Note:''' Here we suppose platforms used are either the NEC-SX8 either the IBM-SP6 from the French computing center IDRIS, else the user will have to adapt some scripts (following instructions in part II-d Add a new target ?) once the NVTK environment will be downloaded. Furthermore it is also assumed that the code management environement is ''modipsl''.[[BR]]
+[[Color(grey, red, '''Note''')]]: Here we suppose platforms used are either the NEC-SX8 either the IBM-SP6 from the French computing center IDRIS, else the user will have to adapt some scripts (following instructions in part II-d Add a new target ?) once the NVTK environment will be downloaded. Furthermore it is also assumed that the code management environement is ''modipsl''. [[BR]]
 
 '''All remarks, suggestions to improve this tool are welcome,  you can write them here:''' [http://forge.ipsl.jussieu.fr/nemo/milestone/NEMO%20Validation%20Tool%20Kit]
@@ -70 +71 @@
 # '''INPUTD'''  : directory where to get ORCA2_LIM_nemo_v3.tar (once downloaded here: [http://dodsp.idris.fr/reee512/NEMO/])[[BR]]
 # '''REFDAT'''  : directory where to get results from reference tags[[BR]]
-# '''DECOMP''' : total number of processors which will be used[[BR]]
 # '''MAIL'''       : give your e-mail[[BR]]
 # '''UAGRIF'''   : one of the standard configurations is based on AGRIF yes/no[[BR]]
@@ -77 +77 @@
 INPUTD=[[BR]]
 REFDAT=[[BR]]
-DECOMP=[[BR]]
 MAIL="your_email@xxxxxxx"[[BR]]
 UAGRIF=no[[BR]]
@@ -89 +88 @@
 > ./ins_nvtk.ksh
 }}}
-
-2. Set the appropriate domain decomposition values for jpni, jpnj & jpnij  parameters. To be done in par_oce.F90_keep file under each ./config/CONFIG_NAME/MY_SRC directory[[BR]]
-
-{{{
-> cd  TEST/modipsl/config/CONFIG_NAME/MY_SRC/
-> vi par_oce.F90_keep
-}}}
-.......
-   INTEGER, PUBLIC, PARAMETER ::    &  !:[[BR]]
-      jpni   = 2,            &  !: number of processors following i[[BR]]
-      jpnj   = 4,            &  !: number of processors following j[[BR]]
-      jpnij  = 8                 !: nb of local domain = nb of processors[[BR]]
-      !                             !  ( <= jpni x jpnj )[[BR]]
-.......
 
 == B - Compilation, Jobs submission and assessment report: ==
@@ -116 +101 @@
 }}}
 
-* '''NAM_V:''' name of the test (this information will be used in the assessment report at the end of all simulations) A directory using the same name must exist, the default one is 2TEST [[BR]]
-* '''LISTE_CONF:''' '''''ORCA2_LIM''' or/and '''GYRE''' or/and '''GYRE_LOBSTER''''': name of standard configurations to be tested with modified routines under 2TEST directory[[BR]]
+* '''NAM_V:''' name of the experiment (associated to the same directory name) the default one is 2TEST [[BR]]
+* '''LISTE_CONF:''' ''ORCA2_LIM'' or/and ''GYRE'' or/and ''GYRE_LOBSTER'': name of standard configurations to be tested with modified routines under 2TEST directory[[BR]]
 * '''JOBS_2LAUN:''' '''''nojob''' or '''all''' or '''long''' or '''short''' or '''gtime''''': choose the job type to launch[[BR]]
-* '''BUILD_MAKE:''' '''''mon''' or/and '''mpi''' or/and '''omp''''': compilation type to perform:mono-processor (''mon'') and/or multi-processors MPI (''mpi'') and/or Open-MP (''omp'') (this list is applied to each configuration specified in the '''LISTE_CONF''' variable). If mpi is specified, the user must set the processor cutting (jpni, jpnj & jpnij parameters) in the par_oce.F90_keep module stored in each ./config/CONFIG_NAME/MY_SRC directory. This MPI decomposition must be the same for the 3 configurations[[BR]]
+* '''BUILD_MAKE:''' '''''mon''' or/and '''mpi''': compilation type to perform:mono-processor (''mon'') and/or multi-processors MPI (''mpi'') [[BR]]
+* '''MPI_I:''' number of processors along i- direction[[BR]]
+* '''MPI_J:''' number of processors along j- direction[[BR]]
+* '''MPIIJ:''' total number of processors [[BR]]
 * '''MAK_TIME:''' '''''timing''' or '''notiming''''' to perform or not a timing check[[BR]]
+* '''USE_IOMPUT:''' use or not the new I/O interface[[BR]]
+* '''USE_IOSERVER:''' use the I/O interface using the server possibility[[BR]]
+* '''NB_PROCS_IOSERVER :''' number of processors dedicated to the I/O server[[BR]]
 * '''MAK_MEMO:''' '''''memo''' or '''nomemo''''' to perform or not a memory check[[BR]]
-* '''REF_TAGV:''' (optional) reference tag version to which compare results[[BR]]
+* '''REF_TAGV:''' (optional) tag/experience name to which compare results[[BR]]
 
 3. launch the whole process (compilation, jobs submission & assessment report) using gmake command from TEST/modipsl/config/NVTK[[BR]]
@@ -144 +135 @@
 
 == D - Paper documentation ==
-
+Note: The paper documentation is not up-to-date yet with the last NEMO tag nemo_v3_2