== '''Integrating IOM_PUT ''' ==
[[BR]]

[[PageOutline]]
   
=== Integrating IOM_PUT ===

09/12/2009: downloading NEMO you have iomput by default (tag v3_2)

=== By default iom_put is activated ===
 
 * key_iomput in modipsl/config/ORCA2_LIM/scripts/BB_make.ldef
 
 * namelist and iodef.xml in IGCM00 is the same that namelist in EXP00 (nothing to change if you want to use iodef.xml by default, like an example)

 * To have post treatment different by default you need to create POST directory in IGCM00 [[BR]]


 Create POST directory under $SUBMIT_DIR:  [[BR]]
 In POST directrory you can put:   [[BR]]
 monitoring01_lim2_ORCA2.cfg  [[BR]]
 monitoring01_opa9_ORCA2.cfg  [[BR]]
  
 (In monitoring01_lim2_ORCA2.cfg I removed ileadfra because now this variable does not exists) 
 see [https://forge.ipsl.jussieu.fr/nemo/wiki/libIGCM/postprocessingpage postprocessingpage]

 At this point:
 '''open problems''':

 1. In ~commonaccount/atlas/monitoring01_opa9_ORCA2.cfg there are only 8 variables so we can do monitoring of this ones (if you want differents you have to add variables in opa9.card and coeherntly create POST directory under IGCM00 and put it a corresponding monitoring01_opa9_ORCA2.cfg) [[BR]]
 to work today with iodef.xml example and monitoring01_opa9_ORCA2.cfg common account you have to leave in opa9.card only section like this:

[OutputFiles] [[BR]]
List=   (${PREFIX_WF1}_grid_T.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_T.nc,               Post_1Y_grid_T),\  [[BR]]
        (${PREFIX_WF2}_grid_T.nc,         ${R_OUT_OCE_WF2}/${PREFIX}_${WF2}_grid_T.nc,               Post_1M_grid_T),\   [[BR]]
        (${PREFIX_WF3}_grid_T.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_T.nc,               Post_5D_grid_T),\   [[BR]]
        (${PREFIX_WF3}_grid_U.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_U.nc,               Post_5D_grid_U),\   [[BR]]
        (${PREFIX_WF3}_grid_V.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_V.nc,               Post_5D_grid_V),\   [[BR]]
        (${PREFIX_WF3}_grid_W.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_W.nc,               Post_5D_grid_W),\   [[BR]]
        (${PREFIX_WF4}_grid_T_0n180w.nc,  ${R_OUT_OCE_WF4}/${PREFIX}_${WF4}_grid_T_0n180w.nc,        NONE ),\   [[BR]]
        (${PREFIX_WF4}_grid_T_Eq.nc,      ${R_OUT_OCE_WF4}/${PREFIX}_${WF4}_grid_T_Eq.nc,            NONE ),\   [[BR]]
        (${PREFIX_WF4}_diaptr.nc,         ${R_OUT_OCE_WF4}/${PREFIX}_${WF4}_diaptr.nc,               Post_1D_diaptr),\   [[BR]]
        (mesh_mask.nc     ,               ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc, NONE),\   [[BR]]
        (output.abort.nc  ,               ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc,                  NONE),\   [[BR]]
        (output.init.nc   ,               ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc, NONE)   [[BR]]


[Post_1M_grid_T]    [[BR]]
Patches = (Patch_20091030_histcom_time_axis)   [[BR]]
GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter)   [[BR]]
TimeSeriesVars = (sosstsst)   [[BR]]

[Post_1Y_grid_T]    [[BR]]
Patches = (Patch_20091030_histcom_time_axis)   [[BR]]
GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter)   [[BR]]
TimeSeriesVars = (sohtc300, sohefldo, soicecov, somxl010, sosaline, sossheig, sosstsst, sowaflcd, sowaflup)   [[BR]]

[Post_5D_grid_T]   [[BR]]
Patches = (Patch_20091030_histcom_time_axis)   [[BR]]
GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter)   [[BR]]
TimeSeriesVars = (sohtc300, sohefldo, soicecov, somxl010, sosaline, sossheig, sosstsst, sowaflcd, sowaflup)   [[BR]]

[Post_5D_grid_U]   [[BR]]
Patches = (Patch_20091030_histcom_time_axis)   [[BR]]
GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter)   [[BR]]
TimeSeriesVars = (sozotaux)   [[BR]]

[Post_5D_grid_U]   [[BR]]
Patches = (Patch_20091030_histcom_time_axis)   [[BR]]
GatherWithInternal = (nav_lon, nav_lat, depthu, time_counter)   [[BR]]
TimeSeriesVars = (sometauy)   [[BR]]

[Post_time]    [[BR]]
Patches = (Patch_20091030_histcom_time_axis)   [[BR]]
GatherWithInternal =   [[BR]]
TimeSeriesVars =   [[BR]]

 And be careful also to COMP/lim2.card

 2. Don't have ATLAS for "ice cover": because new variable is named soicecov and in atlas is written ileadfra