Version 34 (modified by flavoni, 15 years ago) (diff) |
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Using libIGCM librairie with ORCA2_LIM
A - Purposes:
- Document the using of libIGCM for NEMO, in configuration ORCA2_LIM
B - Quick start guide:
- Define the following alias to use SVN :
alias svn_ano='svn co http://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk modipsl' alias svn_libigcm='svn co http://forge.ipsl.jussieu.fr/libigcm/svn/tags/libIGCM_v1_1 libIGCM' alias svn_nemoligcm='svn co http://forge.ipsl.jussieu.fr/nemo/svn/branches/libIGCM/ORCA2_LIM/IGCM00 IGCM00'
- Create and go to the working directory :
mkdir TRY ; cd TRY
- Extract modipsl :
svn_ano
- Extract NEMO :
cd modipsl/util ./model NEMO
- Extract libigcm :
cd ../ svn_libigcm
- Extract card for NEMO for libIGCM :
cd config/ORCA2_LIM svn_nemolibigcm
- Choosing ORCA2_LIM configuration :
cd ../../modeles/util ./fait_config ORCA2_LIM
Editing at this point modipsl/config/ORCA2_LIM/IGCM00/config.card
- Install the makefiles and makejob :
cd ../../util ./ins_make ./ins_job
- Compile :
cd ../config/ORCA2_LIM gmake
- Submit Job :
cd IGCM00 qsub Job_NL1 (on brodie.idris.fr)
C - List of possible errors :
C.1 Errors in modipsl/config/ORCA2_LIM/IGCM00/Script_Output_Job
- Error: TERM = (vt100) ${HOME:-.}/.profile: .bashrc: not found
- Error: ksh: D--------------------------------------------------------------------==: not found
it can depends on your .profile file.
Everything works when your file .profile is like:
«# .profile (idris)
# Fichier d environnement a charger sur la frontale TX7 unix LINUX
# Vous pouvez mettre a jour le fichier .profile_tx
if [ hostname = "brodie" -a -f $HOME/.profile_tx ]; then
. $HOME/.profile_tx
# Fichier d environnement a charger sur les noeuds SX8 unix SUPER-UX
# Vous pouvez mettre a jour le fichier .profile_sx
elif [ hostname != "brodie" -a -f $HOME/.profile_sx ]; then
. $HOME/.profile_sx
else
echo
fi »
- Error « cat: cannot open ........./modipsl/config/ORCA2_LIM/IGCM00/../.resol » :
it is due to modipsl/libIGCM/AA_job file. You have to change in this way:
#-- Resolution FLAG for oasis input
#RESOL=$(cat ${SUBMIT_DIR}/../.resol)
RESOL=
(does not still fixed in libIGCM_v1_1)
- Input files and BC for NEMO DO NOT EXIST (i.e. sst_data.nc, sss_data.nc, geothermal_heating.nc, bathy_level.nc, etc...)
IGCM_sys_Get, ERROR : regular file ...../OCE/ORCA2_LIM/bathy_level.nc DOES NOT EXIST .
In this moment we've still to download /u/rech/eee/reee512/NEMO/ORCA2_LIM_nemo_v3.tar file, and to untar it into the directory:
${R_BC}/OCE/ORCA2_LIM
and where ${R_BC} is a variable that can be changed in modipsl/config/ORCA2_LIM/IGCM00/config.card file.
- Error : --Debug1--> !!!! IGCM_config_Initialize Error PeriodState? :
--Debug1--> Fatal
--Debug1--> !!!!!!!!!!
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