Version 24 (modified by nicolasmartin, 2 years ago) (diff)

Set up simulation

config.card :Description of Sections

Look at [Sections]of config.card

They are:

  • [UserChoices] : set all you choises (you can modify everything)
    • be careful to R_BC directory
  • if you use common login of ipsl (ada: /workgpfs/rech/psl/rpsl035, tgcc:/ccc/work/cont003/dsm/p86ipsl/) nothing to do
  • if you want to change and use your own directory you need to:
    • create ~${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version} directory in which you put your forcing files
    • remark: opa9_UserChoices_OPA_version is defined in COMP/opa9.card
  • [ListOfComponents] : don't modify
  • [Executable] : coherent name between executable in modipsl/bin directory, be careful of NUMBER OF PROCS (Total Number of Processors = NEMO.exe procs + xios.server procs)
  • [Restarts] : if you want that all components RESTART from the same simulation (if not set RESTART of component section: [OCE] or [ICE] or [MBG])
  • [OCE] : you can choise WriteFrequency and if you want to start from RESTART ocean simulation
    • be careful WriteFrequency of each section need to be coherent with output in iodef.xml :
      • for example if in iodef.xml you want output ocean field every 1Y in WriteFrequency you want just 1Y
      • and be careful also to COMP/opa9.card to section [OutputFiles] : {PREFIX_WF1} you'll have WFn for each write frequency output
  • [ICE] : you can choise WriteFrequency and if you want to start from RESTART ice simulation
    • be careful WriteFrequency of each section need to be coherent with output in iodef.xml :
      • for example if in iodef.xml you want output ocean field every 1Y in WriteFrequency you want just 1Y
      • and be careful also to COMP/im3.card to section [OutputFiles] : {PREFIX_WF1} you'll have WFn for each write frequency output
  • [MBG] : you can choise WriteFrequency and if you want to start from RESTART biology simulation
    • be careful WriteFrequency of each section need to be coherent with output in iodef.xml :
      • for example if in iodef.xml you want output ocean field every 1Y in WriteFrequency you want just 1Y
      • and be careful also to COMP/im3.card to section [OutputFiles] : {PREFIX_WF1} you'll have WFn for each write frequency output
  • [Post] : fill if you want have lib IGCM Post Treatment (ATLAS and Time Series)
  • [IOS] : don't modify (IOS has no output frequency not restarts)

config.card file:

# This is config.card file for restart with an NEW lib IGCM simulation tree.
# This is config.card file for NEMO ORCA1_LIM3_PISCES configuration
#
#========================================================================
#D— Compatibility -
[Compatibility]
lib IGCM=1.0
#D— UserChoices -
[UserChoices ]
#============================
#— ( <8 chars MAX for JobName )
JobName = eOR1L3P
#——- Short Name of Experiment
ExperimentName =ORCA1clim
#——- DEVT TEST PROD
SpaceName =DEVT
LongName ="ORCA1_LIM3_PISCES NEMO configuration"
TagName =ORCA1_LIM3_PISCES
#D- Choice of experiment in EXPERIEMENTS directory
ExpType =ORCA1_LIM3_PISCES/clim
#============================
#— leap, noleap, 360d
CalendarType =noleap
#— Begin and end of Job
#— "YYYY-MM-DD"
DateBegin =0001-01-01
DateEnd =0050-12-31
#============================
#— 1Y, 1M, 5D, 1D 31 PeriodLength =1Y
#============================
#— PBS Class (required on brodie mono/multi)
#JobClass =mono
JobClass =multi
#============================
#— Total Number of Processors
JobNumProcTot =225
#============================
#— Run Options :
JobRunOptions =
#============================
# config.card configuration options :

#R_BC=$WORKDIR/../../gzi/rgzi002/IGCM/BC
#R_INIT=$WORKDIR/../../gzi/rgzi002/IGCM/BC
#========================================================================
#D— ListOfComponents -
[ListOfComponents ]
#D- For each component, Name of component, Tag of component
OCE= (opa9, NEMO_v6)
ICE= (lim3, LIM_3)
MBG= (pisces, PISCES)
IOS= (xios, XIOS)
#========================================================================
#D— Executable -
[Executable]
Name=nemo
#D- For each component, Real name of executable
OCE= (nemo.exe, nemo, 221MPI)
ICE= ("", "", "")
MBG= ("", "", "")
IOS= (xios_server.exe, xios.x, 4MPI)
#========================================================================
#D— Restarts -
[Restarts]
#D- by default: config.card describes no restart for all components
#D- ie start from Levitus or limit files
#D- If you want to restart all components from the same simulation,
#D- put OveRule flag to 'y' and set the next 3 parameters
OverRule =n
#D- Last day of the experience used as restart
RestartDate =0094-12-31
#D- Define restart simulation name
RestartJobName =NO1-T17
#D- Path Server Group Login
RestartPath =${ARCHIVE}/IGCM_OUT/ORCA1_LIM3_PISCES/DEVT/ORCA1clim
#========================================================================
#D— OCE -
[OCE]
WriteFrequency ="1D 5D 1M 1Y"
#WriteFrequency ="5D"
Restart= n
##— Last day of the experience used as restart
RestartDate =1999-12-31
# Define restart simulation name
RestartJobName =NL1
RestartPath =${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
# Old component name for restart (if empty, use new name)
OldName =
#========================================================================
#D— ICE -
[ICE]
WriteFrequency ="1M"
Restart= n
##— Last day of the experience used as restart
RestartDate =1999-12-31
# Define restart simulation name
RestartJobName =NL1
RestartPath =${ARCHIVE}/IGCM_OUT/ORCA1_LIM3
# Old component name for restart (if empty, use new name)
OldName =
#========================================================================
#D— MBG -
[MBG]
WriteFrequency ="1D 1M 1Y"
Restart= n
##— Last day of the experience used as restart
RestartDate =2000-12-31
# Define restart simulation name
RestartJobName =OR2LP1
RestartPath =${ARCHIVE}/IGCM_OUT/ORCA1_LIM_PISCES
# Old component name for restart (if empty, use new name)
OldName =
#========================================================================
#D— Post -
[Post]
#D- Do we rebuild parallel output, this flag determines
#D- frequency of rebuild submission
#— 1Y
RebuildFrequency =NONE
#D- Do we rebuild parallel output from archive
RebuildFromArchive =NONE
#D- If you want to produce time series, this flag determines
#D- frequency of post-processing submission
TimeSeriesFrequency =10Y
#D- If you want to produce seasonal average, this flag determines
#D- the period of this average
SeasonalFrequency =NONE
#D- Offset for seasonal average first start dates ; same unit as SeasonalFrequency
#D- Usefull if you do not want to consider the first X simulation's years
#SeasonalFrequencyOffset =0
PackFrequency =1Y
#========================================================================
#D— IOS -
[IOS]
WriteFrequency =""
# If config_Restarts_OverRule == 'n' next 4 params are read
Restart= n
##— Last day of the experience used as restart for this component if Restart=y
RestartDate =1899-12-31
# Define restart simulation name for this component
RestartJobName =EXP00
RestartPath =${ARCHIVE}/IGCM_OUT/IPSLCM5A/DEVT/piControl
# Old component name for restart (if empty, use new name)
OldName =
#========================================================================

Important files

COMP

COMP/opa9.card :

Forcing files

in this configuration libIGCM_v2.7+NEMO_v6: forcing files are these from COREII (extrapoleted on continents to be used on ORCA2 and ORCA1 with worresponding weights)

Forcing files: INTERANNUAL List_jobsbc=(u_10_fill, v_10_fill, ncar_rad_fill, t_10_fill, q_10_fill, ncar_precip_fill)

Forcing files : CLIMATOLOGY List_jobsbc=(u_10.15JUNE2009_fill, v_10.15JUNE2009_fill, ncar_rad.15JUNE2009_fill, t_10.15JUNE2009_fill, q_10.15JUNE2009_fill, ncar_precip.15JUNE2009_fill, weights_WOA13d1_2_eorca1_bilinear, weights_3D_WOA13d1_2_eorca1_bilinear, weights_coreII_2_eorca1_bicubic, weights_coreII_2_eorca1_bilinear, weights_reg05_2_eorca1_bilinear, weights_Goutorbe1_2_eorca1_bilinear )

NOTA ABOUT REVISION http://forge.ipsl.jussieu.fr/igcmg/browser/CONFIG/UNIFORM/v6 2663

list of sbcfiles (surface boundary condition) files need weights to be interpolated on ORCA1 grid;

for climatological runs these weights are declared in Section List_jobsbc of NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/ia/COMP/opa9.card

for interannual runs these weights are declared in Section ListnonDel of NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/clim/config.card


NOTA: if you want to change FORCING or INPUT files you can put you own PATH in R_BC variable in config.card

but BE CAREFUL to be coherent in COMP/opa9.card in Section :

[BoundaryFiles ]
List= ()
ListNonDel =

with variables: (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version} /

COMP/lim3.card

COMP/pisces.card

DRIVER

: shell script to use data of cards : you don't need to change those.

opa9.driver
lim2.driver
lim3.driver
pisces.driver
xios.driver

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