Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/Job_ENSEMBLE
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/Job_ENSEMBLE	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/Job_ENSEMBLE	(revision 5633)
@@ -17,4 +17,6 @@
 #                       Job inspired from Sonke Zaehle "site_new.def" job
 #                       #################################################
+
+export BRIDGE_MSUB_PROJECT=gen6328
 
 if [ $# -lt 1 ] ; then
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/PARAM/orchidee.default
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/PARAM/orchidee.default	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/PARAM/orchidee.default	(revision 5633)
@@ -6,5 +6,5 @@
 #
 #*******************************************************************************************
-#                    Namelist for ORCHIDEE (trunk revision 2480) 
+#                    Namelist for ORCHIDEE 
 #*******************************************************************************************
 #
@@ -18,9 +18,15 @@
 #*******************************************************************************************
 
+# LWDOWN_CONS ([FLAG]) :  Conserve longwave downwelling radiation in the forcing 	{}
+LWDOWN_CONS =  n 
+
+# SWDOWN_CONS ([FLAG]) :  Conserve shortwave downwelling radiation in the forcing 	{}
+SWDOWN_CONS =  LWDOWN_CONS 
+
 # FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
 FORCING_FILE =  forcing_file.nc 
 
-# SPLIT_DT ([-]) :  splits the timestep imposed by the forcing 	{NOT(WEATHERGEN)}
-SPLIT_DT =  12 
+# DT_SECHIBA ([seconds]) :  Time-step of the SECHIBA component 	{NOT(WEATHERGEN)}
+DT_SECHIBA =  1800. 
 
 # RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions 	{[-]}
@@ -37,5 +43,5 @@
 
 # TIME_LENGTH ([seconds, days, months, years]) :  Length of the integration in time. 	{[-]}
-TIME_LENGTH =  DEF 
+TIME_LENGTH =  Full length of the forcing file  
 
 # RELAXATION ([FLAG]) :  method of forcing 	{[-]}
@@ -45,17 +51,8 @@
 RELAX_A =  1.0 
 
-# NO_INTER  ([FLAG]) :  No interpolation IF split is larger than 1 	{[-]}
-NO_INTER  =  y 
-
-# INTER_LIN ([FLAG]) :  Interpolation IF split is larger than 1 	{[-]}
-INTER_LIN =  n 
-
 # SPRED_PREC ([-]) :  Spread the precipitation. 	{[-]}
-SPRED_PREC =  1 
-
-# NETRAD_CONS ([FLAG]) :  Conserve net radiation in the forcing 	{INTER_LIN}
-NETRAD_CONS =  y 
-
-# ATM_CO2 ([ppm]) :  Value for atm CO2 	{[-]}
+SPRED_PREC =  Half of the forcing time step or uniform, depending on dt_force and dt_sechiba 
+
+# ATM_CO2 ([ppm]) :  Value to precribe atmosoheric CO2 	{[FORCE_CO2_VEG=y or Offline mode]}
 ATM_CO2 =  350. 
 
@@ -84,4 +81,10 @@
 ZONAL_RES =  2. 
 
+# HEIGHT_LEV1 ([m]) :  Height at which T and Q are given 	{offline mode}
+HEIGHT_LEV1 =  2.0 
+
+# HEIGHT_LEVW ([m]) :  Height at which the wind is given 	{offline mode}
+HEIGHT_LEVW =  10.0 
+
 # NBUFF (-) :  Number of time steps of data to buffer between each reading of the forcing file 	{OFF_LINE}
 NBUFF =  1 
@@ -102,6 +105,6 @@
 DUMP_WEATHER_GATHERED =  y 
 
-# HEIGHT_LEV1 ([m]) :   	{DUMP_WEATHER}
-HEIGHT_LEV1 =  10. 
+# HEIGHT_LEV1_DUMP ([m]) :   	{DUMP_WEATHER}
+HEIGHT_LEV1_DUMP =  10. 
 
 #*******************************************************************************************
@@ -109,141 +112,132 @@
 #*******************************************************************************************
 
+# SOILTYPE_CLASSIF ([-]) :  Type of classification used for the map of soil types  	{!IMPOSE_VEG}
+SOILTYPE_CLASSIF =  zobler 
+
+# RIVER_ROUTING ([FLAG]) :  Decides if we route the water or not 	{OK_SECHIBA}
+RIVER_ROUTING =  y 
+
+# DO_IRRIGATION ([FLAG]) :  Should we compute an irrigation flux  	{RIVER_ROUTING }
+DO_IRRIGATION =  n 
+
+# DO_FLOODPLAINS ([FLAG]  ) :  Should we include floodplains  	{RIVER_ROUTING }
+DO_FLOODPLAINS =  n 
+
+# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA}
+STOMATE_OK_STOMATE =  y 
+
+# DO_WOOD_HARVEST ([FLAG]) :  Activate Wood Harvest ? 	{OK_STOMATE}
+DO_WOOD_HARVEST =  y 
+
+# STOMATE_OK_DGVM ([FLAG]) :  Activate DGVM? 	{OK_STOMATE}
+STOMATE_OK_DGVM =  n 
+
+# CHEMISTRY_BVOC ([FLAG]) :  Activate calculations for BVOC 	{OK_SECHIBA}
+CHEMISTRY_BVOC =  n 
+
+# CHEMISTRY_LEAFAGE ([FLAG]) :  Activate LEAFAGE? 	{CHEMISTRY_BVOC}
+CHEMISTRY_LEAFAGE =  n 
+
+# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{CHEMISTRY_BVOC }
+CANOPY_EXTINCTION  =  n 
+
+# CANOPY_MULTILAYER ([FLAG]) :  Use canopy radiative transfer model with multi-layers 	{CANOPY_EXTINCTION }
+CANOPY_MULTILAYER =  n 
+
+# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{CHEMISTRY_BVOC }
+NOx_RAIN_PULSE =  n 
+
+# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{CHEMISTRY_BVOC }
+NOx_BBG_FERTIL =  n 
+
+# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{CHEMISTRY_BVOC }
+NOx_FERTILIZERS_USE =  n 
+
+# NVM ([-]) :  number of PFTs   	{OK_SECHIBA or OK_STOMATE}
+NVM =  13 
+
+# IMPOSE_PARAM ([FLAG]) :  Do you impose the values of the parameters? 	{OK_SECHIBA or OK_STOMATE}
+IMPOSE_PARAM =  y 
+
+# DEPTH_MAX_T (m) :  Maximum depth of the soil thermodynamics 	{}
+DEPTH_MAX_T =  90.0 
+
+# DEPTH_MAX_H (m) :  Maximum depth of soil moisture 	{}
+DEPTH_MAX_H =  2.0 
+
+# DEPTH_TOPTHICK (m) :  Thickness of upper most Layer  	{}
+DEPTH_TOPTHICK =  9.77517107e-04 
+
+# DEPTH_CSTTHICK (m) :  Depth at which constant layer thickness start 	{}
+DEPTH_CSTTHICK =  DEPTH_MAX_H  
+
+# REFINEBOTTOM (-) :  Depth at which the hydrology layers will be refined towards the bottom. 	{}
+REFINEBOTTOM =  .FALSE. 
+
+# DEPTH_GEOM (m) :  Depth at which we resume geometrical increases for temperature 	{}
+DEPTH_GEOM =  DEPTH_MAX_H  
+
+# RATIO_GEOM_BELOW (-) :  Ratio of the geometrical series defining the thickness below DEPTH_GEOM 	{}
+RATIO_GEOM_BELOW =  2 
+
+# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
+ALMA_OUTPUT =  n 
+
+# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
+OUTPUT_FILE =  sechiba_history.nc 
+
+# WRITE_STEP ([seconds]) :  Frequency in seconds for sechiba_history.nc file with IOIPSL 	{OK_SECHIBA, NOT XIOS_ORCHIDEE_OK}
+WRITE_STEP =  86400. 
+
+# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
+SECHIBA_HISTLEVEL =  5 
+
+# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
+SECHIBA_HISTFILE2 =  n 
+
+# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
+WRITE_STEP2 =  1800.0 
+
+# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
+SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
+
+# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
+SECHIBA_HISTLEVEL2 =  1 
+
+# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_OUTPUT_FILE =  stomate_history.nc 
+
+# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
+STOMATE_HIST_DT =  10. 
+
+# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
+
+# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
+STOMATE_IPCC_HIST_DT =  0. 
+
+# OK_HISTSYNC ([FLAG]) :  Syncronize and write IOIPSL output files at each time step 	{}
+OK_HISTSYNC =  FALSE 
+
+# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
+STOMATE_HISTLEVEL =  10 
+
+# SECHIBA_restart_in ([FILE]) :  Name of restart to READ for initial conditions 	{OK_SECHIBA }
+SECHIBA_restart_in =  NONE 
+
+# SECHIBA_rest_out ([FILE]) :  Name of restart files to be created by SECHIBA 	{OK_SECHIBA}
+SECHIBA_rest_out =  sechiba_rest_out.nc 
+
+# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE}
+STOMATE_RESTART_FILEIN =  NONE 
+
+# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE}
+STOMATE_RESTART_FILEOUT =  stomate_rest_out.nc 
+
 # FORCE_CO2_VEG ([FLAG]) :  Flag to force the value of atmospheric CO2 for vegetation. 	{Only in coupled mode}
 FORCE_CO2_VEG =  FALSE 
 
-# ATM_CO2 ([ppm]) :  Value for atm CO2  	{FORCE_CO2_VEG (only in coupled mode)}
-ATM_CO2 =  350. 
-
-# CHECKTIME ([FLAG]) :  ORCHIDEE will print messages on time 	{OK_SECHIBA}
-CHECKTIME =  n 
-
-# SOILTYPE_CLASSIF ([-]) :  Type of classification used for the map of soil types  	{!IMPOSE_VEG}
-SOILTYPE_CLASSIF =  zobler 
-
-# ORCHIDEE_WATCHOUT ([FLAG]) :  ORCHIDEE will write out its forcing to a file 	{}
-ORCHIDEE_WATCHOUT =  n 
-
-# DT_WATCHOUT ([seconds]) :  ORCHIDEE will write out with this frequency 	{ORCHIDEE_WATCHOUT}
-DT_WATCHOUT =  dt 
-
-# WATCHOUT_FILE ([FILE]) :  Filenane for the ORCHIDEE forcing file 	{ORCHIDEE_WATCHOUT}
-WATCHOUT_FILE =  orchidee_watchout.nc 
-
-# RIVER_ROUTING ([FLAG]) :  Decides if we route the water or not 	{OK_SECHIBA}
-RIVER_ROUTING =  n 
-
-# HYDROL_CWRR ([FLAG]) :  Allows to switch on the multilayer hydrology of CWRR 	{OK_SECHIBA}
-HYDROL_CWRR =  n 
-
-# HYDROL_SOIL_DEPTH ([m]) :  Total depth of soil reservoir 	{OK_SECHIBA }
-HYDROL_SOIL_DEPTH =  4./ 2. (if HYDROL_CWRR) 
-
-# DO_IRRIGATION ([FLAG]) :  Should we compute an irrigation flux  	{RIVER_ROUTING }
-DO_IRRIGATION =  n 
-
-# DO_FLOODPLAINS ([FLAG]  ) :  Should we include floodplains  	{RIVER_ROUTING }
-DO_FLOODPLAINS =  n 
-
-# CHECK_WATERBAL ([FLAG]  ) :  Should we check the global water balance  	{OK_SECHIBA}
-CHECK_WATERBAL =  n 
-
-# OK_EXPLICITSNOW ([FLAG]) :  Activate explict snow scheme 	{OK_SECHIBA}
-OK_EXPLICITSNOW =  FALSE 
-
-# STOMATE_OK_CO2 ([FLAG]) :  Activate CO2? 	{OK_SECHIBA }
-STOMATE_OK_CO2 =  n 
-
-# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA and OK_CO2}
-STOMATE_OK_STOMATE =  n 
-
-# STOMATE_OK_DGVM ([FLAG]) :  Activate DGVM? 	{OK_STOMATE}
-STOMATE_OK_DGVM =  n 
-
-# DIFFUCO_OK_INCA ([FLAG]) :  Activate DIFFUCO_INCA? 	{OK_SECHIBA}
-DIFFUCO_OK_INCA =  n 
-
-# LEAFAGE_OK_INCA ([FLAG]) :  Activate LEAFAGE? 	{DIFFUCO_OK_INCA}
-LEAFAGE_OK_INCA =  n 
-
-# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{DIFFUCO_OK_INCA }
-CANOPY_EXTINCTION  =  n 
-
-# CANOPY_MULTILAYER ([FLAG]) :  Use canopy radiative transfer model with multi-layers 	{CANOPY_EXTINCTION }
-CANOPY_MULTILAYER =  n 
-
-# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{DIFFUCO_OK_INCA }
-NOx_RAIN_PULSE =  n 
-
-# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{DIFFUCO_OK_INCA }
-NOx_BBG_FERTIL =  n 
-
-# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{DIFFUCO_OK_INCA }
-NOx_FERTILIZERS_USE =  n 
-
-# STOMATE_WATCHOUT ([FLAG]) :  STOMATE does minimum service 	{OK_SECHIBA }
-STOMATE_WATCHOUT =  n 
-
-# NVM ([-]) :  number of PFTs   	{OK_SECHIBA or OK_STOMATE}
-NVM =  13 
-
-# IMPOSE_PARAM ([FLAG]) :  Do you impose the values of the parameters? 	{OK_SECHIBA or OK_STOMATE}
-IMPOSE_PARAM =  y 
-
-# SECHIBA_restart_in ([FILE]) :  Name of restart to READ for initial conditions 	{OK_SECHIBA }
-SECHIBA_restart_in =  NONE 
-
-# SECHIBA_rest_out ([FILE]) :  Name of restart files to be created by SECHIBA 	{OK_SECHIBA}
-SECHIBA_rest_out =  sechiba_rest_out.nc 
-
-# SECHIBA_reset_time ([FLAG]) :  Override the time from the restart files for SECHIBA and STOMATE 	{OK_SECHIBA}
-SECHIBA_reset_time =  y 
-
-# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
-STOMATE_RESTART_FILEIN =  NONE 
-
-# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
-STOMATE_RESTART_FILEOUT =  stomate_rest_out.nc 
-
-# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
-ALMA_OUTPUT =  n 
-
-# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
-OUTPUT_FILE =  sechiba_history.nc 
-
-# WRITE_STEP ([seconds]) :  Frequency in seconds at which to WRITE output 	{OK_SECHIBA}
-WRITE_STEP =  86400. 
-
-# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
-SECHIBA_HISTLEVEL =  5 
-
-# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
-SECHIBA_HISTFILE2 =  n 
-
-# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
-WRITE_STEP2 =  1800.0 
-
-# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
-SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
-
-# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
-SECHIBA_HISTLEVEL2 =  1 
-
-# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_OUTPUT_FILE =  stomate_history.nc 
-
-# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
-STOMATE_HIST_DT =  10. 
-
-# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
-
-# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
-STOMATE_IPCC_HIST_DT =  0. 
-
-# OK_HISTSYNC ([FLAG]) :  Syncronize and write IOIPSL output files at each time step 	{}
-OK_HISTSYNC =  FALSE 
-
-# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
-STOMATE_HISTLEVEL =  10 
+# TAU_OUTFLOW ([days]) :  Number of days over which the coastal- and riverflow will be distributed 	{Only in coupled mode}
+TAU_OUTFLOW =  0 
 
 # ECCENTRICITY ([-]) :  Use prescribed values 	{ALLOW_WEATHERGEN}
@@ -277,4 +271,10 @@
 SLOWPROC_HEIGHT =  0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1., 1. 
 
+# Z0_OVER_HEIGHT ([-] ) :  factor to calculate roughness height from height of canopy  	{OK_SECHIBA}
+Z0_OVER_HEIGHT =  0., 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625 
+
+# RATIO_Z0M_Z0H ([-]) :  Ratio between z0m and z0h 	{OK_SECHIBA}
+RATIO_Z0M_Z0H =  1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0  
+
 # TYPE_OF_LAI ([-]) :  Type of behaviour of the LAI evolution algorithm  	{OK_SECHIBA}
 TYPE_OF_LAI =  inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter 
@@ -289,26 +289,29 @@
 VCMAX_FIX =  0., 40., 50., 30., 35., 40.,30., 40., 35., 60., 60., 70., 70. 
 
-# DOWNREGULATION_CO2_COEFF ([-]) :  coefficient for CO2 downregulation (unitless) 	{OK_CO2}
-DOWNREGULATION_CO2_COEFF =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
-
-# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{OK_CO2}
+# DOWNREG_CO2 ([-]) :  coefficient for CO2 downregulation (unitless) 	{}
+DOWNREG_CO2 =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
+
+# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{}
 E_KmC =  -9999.,  79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430. 
 
-# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{OK_CO2}
+# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{}
 E_KmO =  -9999., 36380.,  36380.,  36380.,  36380.,  36380., 36380., 36380., 36380., 36380., 36380., 36380., 36380. 
 
-# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{OK_CO2}
+# E_Sco ([J mol-1]) :  Energy of activation for Sco 	{}
+E_Sco =  -9999., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460. 
+
+# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{}
 E_gamma_star =  -9999., 37830.,  37830.,  37830.,  37830.,  37830., 37830., 37830., 37830., 37830., 37830., 37830., 37830. 
 
-# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{OK_CO2}
+# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{}
 E_Vcmax =  -9999., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 67300., 71513., 67300. 
 
-# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{OK_CO2}
+# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{}
 E_Jmax =  -9999., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 77900., 49884., 77900.  
 
-# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 aSV =  -9999., 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 641.64, 668.39, 641.64  
 
-# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 bSV =  -9999., -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, 0., -1.07, 0.  
 
@@ -319,21 +322,30 @@
 TPHOTO_MAX =  -9999., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55. 
 
-# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 aSJ =  -9999., 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 630., 659.70, 630.  
 
-# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 bSJ =  -9999., -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, 0., -0.75, 0.  
 
-# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{OK_CO2}
+# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{}
 D_Vcmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{OK_CO2}
+# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{}
 D_Jmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{OK_CO2}
+# E_gm  ([J mol-1] ) :  Energy of activation for gm  	{ }
+E_gm  =  -9999., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., -9999., 49600., -9999.  
+
+# S_gm  ([J K-1 mol-1] ) :  Entropy term for gm  	{ }
+S_gm  =  -9999., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., -9999., 1400., -9999.  
+
+# D_gm  ([J mol-1] ) :  Energy of deactivation for gm  	{ }
+D_gm  =  -9999., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., -9999., 437400., -9999.  
+
+# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{}
 E_Rd =  -9999., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390. 
 
 # VCMAX25 ([micromol/m^2/s]) :  Maximum rate of Rubisco activity-limited carboxylation at 25Â°C 	{OK_STOMATE}
-VCMAX25 =  -9999., 65., 65., 35., 45., 55., 35., 45., 35., 70., 70., 70., 70. 
+VCMAX25 =  -9999., 45.0, 45.0, 35.0, 40.0, 50.0, 45.0, 35.0, 35.0, 50.0, 50.0, 60.0, 60.0 
 
 # ARJV ([mu mol e- (mu mol CO2)-1]) :  a coefficient of the linear regression (a+bT) defining the Jmax25/Vcmax25 ratio  	{OK_STOMATE}
@@ -343,54 +355,72 @@
 BRJV =  -9999., -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, 0., -0.035, 0. 
 
-# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{OK_CO2}
+# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{}
 KmC25 =  -9999., 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 650., 404.9, 650. 
 
-# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{OK_CO2}
+# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{}
 KmO25 =  -9999., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 450000., 278400., 450000. 
 
-# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{OK_CO2}
+# Sco25 ([bar bar-1]) :  Relative CO2 /O2 specificity factor for Rubisco at 25ÃÂ°C 	{}
+Sco25 =  -9999., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2590., 2800., 2590. 
+
+# gm25  ([mol m-2 s-1 bar-1] ) :  Mesophyll diffusion conductance at 25ÃÂÃÂ°C  	{ }
+gm25  =  -9999., 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, -9999., 0.4, -9999.  
+
+# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{}
 gamma_star25 =  -9999., 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75 
 
-# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
-a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85 
-
-# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
+# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
+a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.72, 0.85, 0.72 
+
+# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
 b1 =  -9999., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.20, 0.14, 0.20 
 
-# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{OK_CO2}
+# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{}
 g0 =  -9999., 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.01875, 0.00625, 0.01875  
 
-# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{OK_CO2}
+# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{}
 h_protons =  -9999., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4.  
 
-# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{OK_CO2}
+# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{}
 fpsir =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.4, -9999., 0.4  
 
-# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{OK_CO2}
+# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{}
 fQ =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 1., -9999., 1. 
 
-# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{OK_CO2}
+# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{}
 fpseudo =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{OK_CO2}
+# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{}
 kp =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.7, -9999., 0.7 
 
-# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{OK_CO2}
+# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{}
 alpha =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{OK_CO2}
+# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{}
 gbs =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.003, -9999., 0.003 
 
-# theta ([â]) :  Convexity factor for response of J to irradiance 	{OK_CO2}
+# theta ([â]) :  Convexity factor for response of J to irradiance 	{}
 theta =  -9999., 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7 
 
-# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{OK_CO2}
+# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{}
 alpha_LL =  -9999., 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372 
+
+# STRESS_VCMAX ([-]) :  Stress on vcmax 	{OK_SECHIBA or OK_STOMATE}
+STRESS_VCMAX =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GS ([-]) :  Stress on gs 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GS =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GM ([-]) :  Stress on gm 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GM =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
 
 # EXT_COEFF ([-]) :  extinction coefficient of the Monsi&Seaki relationship (1953) 	{OK_SECHIBA or OK_STOMATE}
 EXT_COEFF =  .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5 
 
+# EXT_COEFF_VEGETFRAC ([-]) :  extinction coefficient used for the calculation of the bare soil fraction  	{OK_SECHIBA or OK_STOMATE}
+EXT_COEFF_VEGETFRAC =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
 # HYDROL_HUMCSTE ([m]) :  Root profile 	{OK_SECHIBA}
-HYDROL_HUMCSTE =  humcste_cwrr or humcste_mct depending on flag HYDROL_CWRR 
+HYDROL_HUMCSTE =  humcste_ref2m or humcste_ref4m depending on zmaxh 
 
 # PREF_SOIL_VEG ([-]        ) :  The soil tile number for each vegetation 	{OK_SECHIBA or OK_STOMATE}
@@ -410,64 +440,127 @@
 
 # PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy. Default value depend on run mode. 	{OK_SECHIBA}
-PERCENT_THROUGHFALL_PFT =  Case offline+CWRR [0. 0. 0....] else [30. 30. 30.....] 
-
-# SNOWA_AGED ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow) 	{OK_SECHIBA}
-SNOWA_AGED =  0.35, 0., 0., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.18, 0.18, 0.18, 0.18 
-
-# SNOWA_DEC ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow 	{OK_SECHIBA}
-SNOWA_DEC =  0.45, 0.,  0., 0.06, 0.06, 0.11, 0.06, 0.11, 0.11, 0.52,0.52, 0.52, 0.52 
+PERCENT_THROUGHFALL_PFT =  Case offline [0. 0. 0....] else [30. 30. 30.....] 
+
+# SNOWA_AGED_VIS ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), visible albedo 	{OK_SECHIBA}
+SNOWA_AGED_VIS =  0.74, 0.0, 0.0, 0.08, 0.24, 0.07, 0.18, 0.18, 0.33, 0.57, 0.57, 0.57, 0.57 
+
+# SNOWA_AGED_NIR ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), near infrared albedo 	{OK_SECHIBA}
+SNOWA_AGED_NIR =  0.50, 0.0, 0.0, 0.10, 0.37, 0.08, 0.16, 0.17, 0.27, 0.44, 0.44, 0.44, 0.44   
+
+# SNOWA_DEC_VIS ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, visible albedo 	{OK_SECHIBA}
+SNOWA_DEC_VIS =  0.21, 0.0, 0.0, 0.14, 0.08, 0.17, 0.05, 0.06, 0.09, 0.15, 0.15, 0.15, 0.15  
+
+# SNOWA_DEC_NIR ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, near infrared albedo 	{OK_SECHIBA}
+SNOWA_DEC_NIR =  0.13, 0.0, 0.0, 0.10, 0.10, 0.16, 0.04, 0.07, 0.08, 0.12, 0.12, 0.12, 0.12 
 
 # ALB_LEAF_VIS ([-]) :  leaf albedo of vegetation type, visible albedo 	{OK_SECHIBA}
-ALB_LEAF_VIS =  .00, .04, .06, .06, .06,.06, .06, .06, .06, .10, .10, .10, .10 
+ALB_LEAF_VIS =  0.00, 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.06, 0.06, 0.06, 0.06 
 
 # ALB_LEAF_NIR ([-]) :  leaf albedo of vegetation type, near infrared albedo 	{OK_SECHIBA}
-ALB_LEAF_NIR =  .00, .20, .22, .22, .22,.22, .22, .22, .22, .30, .30, .30, .30  
-
-# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{DIFFUCO_OK_INCA}
+ALB_LEAF_NIR =  0.00, 0.23, 0.18, 0.18, 0.20, 0.24, 0.15, 0.26, 0.20, 0.24, 0.27, 0.28, 0.26 
+
+# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{CHEMISTRY_BVOC}
 ISO_ACTIVITY =  0.5, 1.5, 1.5, 0.5 
 
-# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{DIFFUCO_OK_INCA}
+# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{CHEMISTRY_BVOC}
 METHANOL_ACTIVITY =  1., 1., 0.5, 0.5 
 
-# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 8., 8., 16., 24., 5., 5. 
-
-# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MONOTERPENE =  0., 0.8, 0.8, 2.4, 1.2, 0.8, 2.4, 2.4, 2.4, 0.8, 1.2, 0.2, 0.2 
-
-# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{DIFFUCO_OK_INCA }
+# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 18., 0.5, 12., 18., 5., 5. 
+
+# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MONOTERPENE =  0., 2.0, 2.0, 1.8, 1.4, 1.6, 1.8, 1.4, 1.8, 0.8, 0.8,  0.22, 0.22 
+
+# C_LDF_MONO  ([]) :  Monoterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_MONO  =  0.6 
+
+# C_LDF_SESQ  ([]) :  Sesquiterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_SESQ  =  0.5 
+
+# C_LDF_METH  ([]) :  Methanol fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_METH  =  0.8 
+
+# C_LDF_ACET  ([]) :  Acetone fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_ACET  =  0.2 
+
+# EM_FACTOR_APINENE  ([ugC/g/h] ) :  Alfa pinene  emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_APINENE  =  0., 1.35, 1.35, 0.85, 0.95, 0.75, 0.85, 0.60, 1.98, 0.30, 0.30, 0.09, 0.09 
+
+# EM_FACTOR_BPINENE ([ugC/g/h] ) :  Beta pinene  emission factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_BPINENE =  0., 0.30, 0.30, 0.35, 0.25, 0.20, 0.35, 0.12, 0.45, 0.16, 0.12, 0.05, 0.05 
+
+# EM_FACTOR_LIMONENE ([ugC/g/h] ) :  Limonene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_LIMONENE =  0., 0.25, 0.25, 0.20, 0.25, 0.14, 0.20, 0.135, 0.11, 0.19, 0.42, 0.03, 0.03 
+
+# EM_FACTOR_MYRCENE ([ugC/g/h] ) :  Myrcene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_MYRCENE =  0., 0.20, 0.20, 0.12, 0.11, 0.065, 0.12, 0.036, 0.075, 0.08,  0.085, 0.015, 0.015 
+
+# EM_FACTOR_SABINENE ([ugC/g/h] ) :  Sabinene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_SABINENE =  0., 0.20, 0.20, 0.12, 0.17, 0.70, 0.12, 0.50, 0.09, 0.085, 0.075, 0.02, 0.02 
+
+# EM_FACTOR_CAMPHENE  ([ugC/g/h] ) :  Camphene  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_CAMPHENE  =  0., 0.15, 0.15, 0.10, 0.10, 0.01, 0.10, 0.01, 0.07, 0.07, 0.08, 0.01, 0.01 
+
+# EM_FACTOR_3CARENE  ([ugC/g/h] ) :  3-Carene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_3CARENE  =  0., 0.13, 0.13, 0.42, 0.02, 0.055, 0.42,0.025, 0.125, 0.085, 0.085, 0.065, 0.065 
+
+# EM_FACTOR_TBOCIMENE ([ugC/g/h] ) :  T-beta-ocimene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_TBOCIMENE =  0., 0.25, 0.25, 0.13, 0.09, 0.26, 0.13, 0.20, 0.085, 0.18, 0.18, 0.01, 0.01 
+
+# EM_FACTOR_OTHERMONOT ([ugC/g/h] ) :  Other monoterpenes  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_OTHERMONOT =  0., 0.17, 0.17, 0.11, 0.11, 0.125, 0.11, 0.274, 0.01, 0.15, 0.155, 0.035, 0.035 
+
+# EM_FACTOR_SESQUITERP  ([ugC/g/h] ) :  Sesquiterpenes  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_SESQUITERP  =  0., 0.45, 0.45, 0.13, 0.3, 0.36, 0.15, 0.3, 0.25, 0.6, 0.6, 0.08, 0.08 
+
+# C_BETA_MONO  ([]) :  Monoterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_MONO  =  0.1 
+
+# C_BETA_SESQ  ([]) :  Sesquiterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_SESQ  =  0.17 
+
+# C_BETA_METH  ([]) :  Methanol temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_METH  =  0.08 
+
+# C_BETA_ACET  ([]) :  Acetone temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_ACET  =  0.1 
+
+# C_BETA_OXYVOC  ([]) :  Other oxygenated BVOC temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_OXYVOC  =  0.13 
+
+# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{CHEMISTRY_BVOC }
 EM_FACTOR_ORVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{DIFFUCO_OK_INCA}
+# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{CHEMISTRY_BVOC}
 EM_FACTOR_OVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MBO =  0., 0., 0., 20.0, 0., 0., 0., 0., 0., 0., 0., 0., 0. 
-
-# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_METHANOL =  0., 0.6, 0.6, 1.8, 0.9, 0.6, 1.8, 1.8, 1.8, 0.6, 0.9, 2., 2. 
-
-# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETONE =  0., 0.29, 0.29, 0.87, 0.43, 0.29, 0.87, 0.87, 0.87, 0.29, 0.43, 0.07, 0.07  
-
-# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{DIFFUCO_OK_INCA}
-EM_FACTOR_ACETAL =  0., 0.1, 0.1, 0.3, 0.15, 0.1, 0.3, 0.3, 0.3, 0.1, 0.15, 0.025, 0.025 
-
-# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_FORMAL =  0., 0.07, 0.07, 0.2, 0.1, 0.07, 0.2, 0.2, 0.2, 0.07, 0.1, 0.017, 0.017 
-
-# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETIC =  0., 0.002, 0.002, 0.006, 0.003, 0.002, 0.006, 0.006, 0.006, 0.002, 0.003, 0.0005, 0.0005 
-
-# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_FORMIC =  0., 0.01, 0.01, 0.03, 0.015, 0.01, 0.03, 0.03, 0.03, 0.01, 0.015, 0.0025, 0.0025  
-
-# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MBO =  0., 2.e-5, 2.e-5, 1.4, 2.e-5, 2.e-5, 0.14, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5 
+
+# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_METHANOL =  0., 0.8, 0.8, 1.8, 0.9, 1.9, 1.8, 1.8, 1.8, 0.7, 0.9, 2., 2. 
+
+# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETONE =  0., 0.25, 0.25, 0.3, 0.2, 0.33, 0.3, 0.25, 0.25, 0.2, 0.2, 0.08, 0.08 
+
+# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_ACETAL =  0., 0.2, 0.2, 0.2, 0.2, 0.25, 0.25, 0.16, 0.16, 0.12, 0.12, 0.035, 0.02 
+
+# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_FORMAL =  0., 0.04, 0.04, 0.08, 0.04, 0.04, 0.04, 0.04, 0.04, 0.025, 0.025, 0.013, 0.013 
+
+# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETIC =  0., 0.025, 0.025,0.025,0.022,0.08,0.025,0.022,0.013,0.012,0.012,0.008,0.008 
+
+# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_FORMIC =  0., 0.015, 0.015, 0.02, 0.02, 0.025, 0.025, 0.015, 0.015,0.010,0.010,0.008,0.008 
+
+# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_WET =  0., 2.6, 0.06, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.36, 0.36, 0.36, 0.36 
 
-# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_DRY =  0., 8.60, 0.40, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 2.65, 2.65, 2.65, 2.65 
 
-# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{DIFFUCO_OK_INCA }
+# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{CHEMISTRY_BVOC }
 LARCH =  0., 0.015, 0.015, 0.003, 0.005, 0.005, 0.003, 0.005, 0.003, 0.005, 0.005, 0.008, 0.008 
 
@@ -475,4 +568,7 @@
 SLA =  1.5E-2, 1.53E-2, 2.6E-2, 9.26E-3, 2E-2, 2.6E-2, 9.26E-3, 2.6E-2, 1.9E-2, 2.6E-2, 2.6E-2, 2.6E-2, 2.6E-2 
 
+# AVAILABILITY_FACT  ([-]   ) :  Calculate dynamic mortality in lpj_gap, pft dependent parameter 	{OK_STOMATE }
+AVAILABILITY_FACT  =  -9999., 0.14, 0.14, 0.10, 0.10, 0.10, 0.05, 0.05, 0.05, -9999., -9999., -9999., -9999.  
+
 # R0  ([-]    ) :  Standard root allocation  	{OK_STOMATE }
 R0  =  -9999., .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
@@ -482,8 +578,8 @@
 
 # FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE}
-FRAC_GROWTHRESP =  -9999., .28, .28, .28, .28, .28, .28, .28, .28, .28, .28, .28, .28  
+FRAC_GROWTHRESP =  -9999., 0.35, 0.35, 0.28, 0.28, 0.28, 0.35, 0.35, 0.35, 0.28, 0.28, 0.28, 0.28 
 
 # MAINT_RESP_SLOPE_C ([-]) :  slope of maintenance respiration coefficient (1/K), constant c of aT^2+bT+c , tabulated 	{OK_STOMATE}
-MAINT_RESP_SLOPE_C =  -9999., .20, .20, .16, .16, .16, .16, .16, .16, .16, .12, .16, .12  
+MAINT_RESP_SLOPE_C =  -9999., 0.12, 0.12, 0.16, 0.16, 0.16, 0.25, 0.25, 0.25, 0.16, 0.12, 0.16, 0.12 
 
 # MAINT_RESP_SLOPE_B ([-]) :  slope of maintenance respiration coefficient (1/K), constant b of aT^2+bT+c , tabulated 	{OK_STOMATE}
@@ -536,5 +632,5 @@
 
 # LAI_MAX ([m^2/m^2]) :  maximum LAI, PFT-specific 	{OK_STOMATE}
-LAI_MAX =  -9999., 7., 7., 5., 5., 5., 4.5, 4.5, 3.0, 2.5, 2.5, 5.,5.  
+LAI_MAX =  -9999., 7.0, 5.0, 5.0, 4.0, 5.0, 3.5, 4.0, 3.0, 2.5, 2.0, 5.0, 5.0 
 
 # PHENO_TYPE ([-]) :  type of phenology, 0 	{OK_STOMATE}
@@ -550,4 +646,7 @@
 PHENO_GDD_CRIT_A =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.03125,  0., 0., 0. 
 
+# PHENO_MOIGDD_T_CRIT ([C]) :  Average temperature threashold for C4 grass used in pheno_moigdd 	{OK_STOMATE}
+PHENO_MOIGDD_T_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 22.0, -9999., -9999. 
+
 # NGD_CRIT ([days]) :  critical ngd, tabulated. Threshold -5 degrees 	{OK_STOMATE}
 NGD_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0., -9999., -9999., -9999., -9999., -9999. 
@@ -622,4 +721,7 @@
 GDD_SENESCENCE =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 950., 4000. 
 
+# ALWAYS_INIT ([BOOLEAN]) :  Take carbon from atmosphere if carbohydrate reserve too small 	{OK_STOMATE}
+ALWAYS_INIT =  y, y, y, y, y, y, y, y, y, y, n, y, y 
+
 # RESIDENCE_TIME ([years]) :  residence time of trees 	{OK_DGVM and NOT(LPJ_GAP_CONST_MORT)}
 RESIDENCE_TIME =  -9999., 30.0, 30.0, 40.0, 40.0, 40.0, 80.0, 80.0, 80.0, 0.0, 0.0, 0.0, 0.0  
@@ -637,6 +739,6 @@
 TREAT_EXPANSION =  n 
 
-# LPJ_GAP_CONST_MORT ([FLAG]) :  prescribe mortality if not using DGVM? 	{OK_STOMATE}
-LPJ_GAP_CONST_MORT =  y 
+# LPJ_GAP_CONST_MORT ([FLAG]) :  Constant mortality 	{OK_STOMATE AND NOT OK_DGVM}
+LPJ_GAP_CONST_MORT =  y/n depending on OK_DGVM 
 
 # HARVEST_AGRI ([FLAG]) :  Harvest model for agricultural PFTs. 	{OK_STOMATE }
@@ -644,5 +746,5 @@
 
 # FIRE_DISABLE ([FLAG]) :  no fire allowed 	{OK_STOMATE }
-FIRE_DISABLE =  n 
+FIRE_DISABLE =  y 
 
 # SPINUP_ANALYTIC (BOOLEAN    ) :  Activation of the analytic resolution of the spinup. 	{OK_STOMATE}
@@ -661,26 +763,17 @@
 LAI_MAP =  n 
 
-# SLOWPROC_LAI_OLD_INTERPOL ([FLAG]) :  Flag to use old "interpolation" of LAI 	{LAI_MAP}
-SLOWPROC_LAI_OLD_INTERPOL =  n 
-
-# LAND_USE ([FLAG]) :  Read a land_use vegetation map 	{OK_SECHIBA or OK_STOMATE}
-LAND_USE =  y 
-
-# VEGET_REINIT ([FLAG] ) :  booleen to indicate that a new LAND USE file will be used. 	{LAND_USE}
+# VEGET_REINIT ([FLAG] ) :  Reset veget_year counter (obsolet) 	{VEGET_UPDATE > 0Y}
 VEGET_REINIT =  y 
 
-# LAND_COVER_CHANGE ([FLAG] ) :  treat land use modifications 	{LAND_USE}
-LAND_COVER_CHANGE =  n 
-
-# VEGET_YEAR ([FLAG] ) :  Year of the land_use vegetation map to be read 	{LAND_USE}
+# VEGETMAP_RESET ([FLAG] ) :  Flag to change vegetation map without activating LAND USE change for carbon fluxes and reset carbon related variables to zero 	{}
+VEGETMAP_RESET =  n 
+
+# VEGET_YEAR ([FLAG] ) :  Year of the vegetation map to be read 	{}
 VEGET_YEAR =  1 
 
-# SLOWPROC_VEGET_OLD_INTERPOL ([FLAG] ) :  Flag to use old "interpolation" of vegetation map. 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-SLOWPROC_VEGET_OLD_INTERPOL =  n 
-
-# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA or HYDROL_CWRR}
+# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA}
 MAXMASS_SNOW =  3000. 
 
-# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA or HYDROL_CWRR}
+# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA}
 SNOWCRI =  1.5 
 
@@ -692,8 +785,20 @@
 
 # SNOW_TRANS ([m]   ) :  Transformation time constant for snow 	{OK_SECHIBA}
-SNOW_TRANS =  0.3 
-
-# Z0_OVER_HEIGHT ([-]   ) :  to get z0 from height  	{OK_SECHIBA }
-Z0_OVER_HEIGHT =  1/16. 
+SNOW_TRANS =  0.2 
+
+# OK_NUDGE_MC ([FLAG]) :  Activate nudging of soil moisture 	{}
+OK_NUDGE_MC =  n 
+
+# NUDGE_TAU_MC ([-]) :  Relaxation time for nudging of soil moisture expressed in fraction of the day 	{OK_NUDGE_MC}
+NUDGE_TAU_MC =  1 
+
+# OK_NUDGE_SNOW ([FLAG]) :  Activate nudging of snow variables 	{}
+OK_NUDGE_SNOW =  n 
+
+# NUDGE_TAU_SNOW ([-]) :  Relaxation time for nudging of snow variables 	{OK_NUDGE_SNOW}
+NUDGE_TAU_SNOW =  1 
+
+# NUDGE_INTERPOL_WITH_XIOS ([FLAG]) :  Activate reading and interpolation with XIOS for nudging fields 	{OK_NUDGE_MC or OK_NUDGE_SNOW}
+NUDGE_INTERPOL_WITH_XIOS =  n 
 
 # HEIGHT_DISPLACEMENT ([m]  ) :  Magic number which relates the height to the displacement height. 	{OK_SECHIBA }
@@ -707,5 +812,5 @@
 
 # TCST_SNOWA ([days]) :  Time constant of the albedo decay of snow 	{OK_SECHIBA }
-TCST_SNOWA =  5.0  
+TCST_SNOWA =  10.0  
 
 # SNOWCRI_ALB ([cm]  ) :  Critical value for computation of snow albedo 	{OK_SECHIBA}
@@ -742,6 +847,6 @@
 ALB_BARE_MODEL =  n 
 
-# Z0CDRAG_AVE ([FLAG]) :  Average method for z0 	{OK_SECHIBA}
-Z0CDRAG_AVE =  y 
+# ALB_BG_MODIS ([FLAG]) :  Read bare soil albedo from file with background MODIS data 	{OK_SECHIBA}
+ALB_BG_MODIS =  y 
 
 # IMPOSE_AZE ([FLAG]) :  Should the surface parameters be prescribed 	{OK_SECHIBA}
@@ -763,4 +868,25 @@
 CONDVEG_EMIS =  1.0 
 
+# ROUGH_DYN ([FLAG]) :  Account for a dynamic roughness height 	{OK_SECHIBA}
+ROUGH_DYN =  y 
+
+# C1 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C1 =  0.32 
+
+# C2 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C2 =  0.264 
+
+# C3 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C3 =  15.1 
+
+# Cdrag_foliage ([-] ) :  Drag coefficient of the foliage 	{ROUGH_DYN}
+Cdrag_foliage =  0.2 
+
+# Ct ([-] ) :  Heat transfer coefficient of the leaf 	{ROUGH_DYN}
+Ct =  0.01 
+
+# Prandtl ([-] ) :  Prandtl number used in the calculation of Ct* 	{ROUGH_DYN}
+Prandtl =  0.71 
+
 # xansmax  ([-] ) :  maximum snow albedo 	{OK_SECHIBA}
 xansmax  =  0.85 
@@ -851,12 +977,21 @@
 
 # DOWNREGULATION_CO2 ([FLAG]   ) :  Activation of CO2 downregulation 	{OK_SECHIBA}
-DOWNREGULATION_CO2 =  n  
+DOWNREGULATION_CO2 =  y 
 
 # DOWNREGULATION_CO2_BASELEVEL ([ppm]   ) :  CO2 base level 	{OK_SECHIBA }
-DOWNREGULATION_CO2_BASELEVEL =  280. 
+DOWNREGULATION_CO2_BASELEVEL =  380. 
+
+# GB_REF ([s m-1]   ) :  Leaf bulk boundary layer resistance 	{}
+GB_REF =  1./25. 
 
 # CLAYFRACTION_DEFAULT ([-]   ) :  default fraction of clay 	{OK_SECHIBA }
 CLAYFRACTION_DEFAULT =  0.2  
 
+# SANDFRACTION_DEFAULT ([-]   ) :  default fraction of sand 	{OK_SECHIBA }
+SANDFRACTION_DEFAULT =  0.4  
+
+# SILTFRACTION_DEFAULT ([-]   ) :  default fraction of silt 	{OK_SECHIBA }
+SILTFRACTION_DEFAULT =  0.4  
+
 # MIN_VEGFRAC  ([-]  ) :  Minimal fraction of mesh a vegetation type can occupy  	{OK_SECHIBA }
 MIN_VEGFRAC  =  0.001  
@@ -865,8 +1000,8 @@
 STEMPDIAG_BID  =  280. 
 
-# LAI_LEVEL_DEPTH ([-]  ) :   	{OK_CO2}
+# LAI_LEVEL_DEPTH ([-]  ) :   	{}
 LAI_LEVEL_DEPTH =  0.15 
 
-# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{OK_CO2}
+# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{}
 Oi =  210000. 
 
@@ -892,7 +1027,4 @@
 FIREFRAC_COEFF  =  0.45, 0.8, 0.6, 0.13 
 
-# AVAILABILITY_FACT  ([-]   ) :   	{OK_STOMATE }
-AVAILABILITY_FACT  =  0.1 
-
 # REF_GREFF ([1/year]  ) :  Asymptotic maximum mortality rate 	{OK_STOMATE }
 REF_GREFF =  0.035 
@@ -1105,7 +1237,4 @@
 TAX_MAX =  0.8 
 
-# ALWAYS_INIT ([-]   ) :  take carbon from atmosphere if carbohydrate reserve too small?  	{OK_STOMATE }
-ALWAYS_INIT =  n  
-
 # MIN_GROWTHINIT_TIME  ([days]  ) :  minimum time since last beginning of a growing season 	{OK_STOMATE }
 MIN_GROWTHINIT_TIME  =  300.  
@@ -1160,8 +1289,8 @@
 
 # CARBON_TAU_ISLOW ([days]) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_ISLOW =  5.48 
+CARBON_TAU_ISLOW =  7.0 
 
 # CARBON_TAU_IPASSIVE ([days] ) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_IPASSIVE =  241. 
+CARBON_TAU_IPASSIVE =  300. 
 
 # FLUX_TOT_COEFF ([days] ) :  	{OK_STOMATE }
@@ -1171,7 +1300,4 @@
 NEW_TURNOVER_TIME_REF =  20.  
 
-# DT_TURNOVER_TIME  ([days]  ) :   	{OK_STOMATE }
-DT_TURNOVER_TIME  =  10. 
-
 # LEAF_AGE_CRIT_TREF ([days]  ) :   	{OK_STOMATE }
 LEAF_AGE_CRIT_TREF =  20.  
@@ -1262,11 +1388,8 @@
 
 # PRINTLEV ([0, 1, 2, 3, 4]) :  Print level for text output 	{}
-PRINTLEV =  1 
+PRINTLEV =  2 
 
 # PRINTLEV_modname ([0, 1, 2, 3, 4]) :  Specific print level of text output for the module "modname". Default as PRINTLEV. 	{}
-PRINTLEV_modname =  1 
-
-# THERMOSOIL_NBLEV ((-)) :  Number of soil level 	{}
-THERMOSOIL_NBLEV =  7 
+PRINTLEV_modname =  PRINTLEV 
 
 # DRY_SOIL_HEAT_CAPACITY ([J.m^{-3}.K^{-1}] ) :  Dry soil Heat capacity of soils 	{OK_SECHIBA }
@@ -1288,70 +1411,49 @@
 SNOW_DENSITY =  330.0 
 
-# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
+# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{}
 NOBIO_WATER_CAPAC_VOLUMETRI =  150. 
+
+# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
+SECHIBA_QSINT  =  0.02 
+
+# OK_FREEZE ([FLAG]) :  Activate the complet soil freezing scheme 	{OK_SECHIBA }
+OK_FREEZE =  TRUE 
+
+# READ_REFTEMP ([FLAG]) :  Initialize soil temperature using climatological temperature 	{}
+READ_REFTEMP =  True/False depening on OK_FREEZE 
+
+# OK_FREEZE_THERMIX ([FLAG]) :  Activate thermal part of the soil freezing scheme 	{}
+OK_FREEZE_THERMIX =  True if OK_FREEZE else false 
+
+# OK_ECORR ([FLAG]) :  Energy correction for freezing 	{OK_FREEZE_THERMIX}
+OK_ECORR =  True if OK_FREEZE else false 
+
+# OK_FREEZE_THAW_LATENT_HEAT ([FLAG]) :  Activate latent heat part of the soil freezing scheme 	{}
+OK_FREEZE_THAW_LATENT_HEAT =  FALSE  
+
+# POROS ([-] ) :  Soil porosity  	{OK_SECHIBA}
+POROS =  0.41 
+
+# fr_dT ([K] ) :  Freezing window     	{OK_SECHIBA}
+fr_dT =  2.0 
+
+# OK_FREEZE_CWRR ([FLAG]) :  CWRR freezing scheme by I. Gouttevin 	{}
+OK_FREEZE_CWRR =  True if OK_FREEZE else false 
+
+# OK_THERMODYNAMICAL_FREEZING ([FLAG]) :  Calculate frozen fraction thermodynamically  	{OK_FREEZE_CWRR}
+OK_THERMODYNAMICAL_FREEZING =  True 
+
+# CHECK_CWRR ([FLAG]) :  Calculate diagnostics to check CWRR water balance 	{}
+CHECK_CWRR =  n 
+
+# VEGET_UPDATE ([years]) :  Update vegetation frequency: 0Y or 1Y 	{}
+VEGET_UPDATE =  0Y 
+
+# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
+SECHIBA_ZCANOP =  0.5 
 
 # SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
 SECHIBA_QSINT  =  0.1 
 
-# CHOISNEL_DIFF_MIN ([kg/m^2/dt]) :  Diffusion constant for the slow regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MIN =  0.001 
-
-# CHOISNEL_DIFF_MAX ([kg/m^2/dt]) :  Diffusion constant for the fast regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MAX =  0.1 
-
-# CHOISNEL_DIFF_EXP ([-]) :  The exponential in the diffusion law 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_EXP =  1.5 
-
-# CHOISNEL_RSOL_CSTE ([s/m^2]) :  Constant in the computation of resistance for bare  soil evaporation  	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_RSOL_CSTE =  33.E3 
-
-# HCRIT_LITTER ([m]) :  Scaling depth for litter humidity 	{OK_SECHIBA and .NOT.(HYDROL_CWRR) }
-HCRIT_LITTER =  0.08  
-
-# OK_FREEZE ([FLAG]) :  Activate the complet soil freezing scheme 	{OK_SECHIBA }
-OK_FREEZE =  FALSE 
-
-# OK_ECORR ([FLAG]) :  Energy correction for freezing 	{}
-OK_ECORR =  True if OK_FREEZE else false 
-
-# READ_PERMAFROST_MAP ([FLAG]) :  Read information about ice content, overburden and permafrost type from IPA map 	{}
-READ_PERMAFROST_MAP =  FALSE 
-
-# READ_REFTEMP ([FLAG]) :  Initialize soil temperature using climatological temperature 	{}
-READ_REFTEMP =  True if OK_FREEZE else false 
-
-# OK_FREEZE_THERMIX ([FLAG]) :  Activate thermal part of the soil freezing scheme 	{}
-OK_FREEZE_THERMIX =  True if OK_FREEZE else false 
-
-# POROS ([-] ) :  Soil porosity  	{OK_SECHIBA}
-POROS =  0.41 
-
-# fr_dT ([K] ) :  Freezing window     	{OK_SECHIBA}
-fr_dT =  2.0 
-
-# OK_SNOWFACT ([FLAG]) :  Activates the smoothering of landscapes by snow, 	{}
-OK_SNOWFACT =  True if OK_FREEZE else false 
-
-# OK_FREEZE_CWRR ([FLAG]) :  CWRR freezing scheme by I. Gouttevin 	{}
-OK_FREEZE_CWRR =  True if OK_FREEZE else false 
-
-# OK_THERMODYNAMICAL_FREEZING ([FLAG]) :  Calculate frozen fraction thermodynamically  	{HYDROL_CWRR .AND. OK_FREEZE_CWRR}
-OK_THERMODYNAMICAL_FREEZING =  True 
-
-# SECHIBA_DAY ([days]) :  Time within the day simulated 	{OK_SECHIBA}
-SECHIBA_DAY =  0.0 
-
-# VEGET_UPDATE ([years]) :  Update vegetation frequency 	{LAND_USE}
-VEGET_UPDATE =  0Y 
-
-# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
-SECHIBA_ZCANOP =  0.5 
-
-# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
-SECHIBA_QSINT  =  0.1 
-
-# DT_SLOW ([seconds]) :  Time step of STOMATE and other slow processes 	{OK_STOMATE}
-DT_SLOW =  86400. 
-
 # SECHIBA_VEGMAX ([-]) :  Maximum vegetation distribution within the mesh (0-dim mode) 	{IMPOSE_VEG}
 SECHIBA_VEGMAX =  0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0 
@@ -1369,4 +1471,7 @@
 CLAY_FRACTION =  0.2 
 
+# SAND_FRACTION ([-] ) :  Fraction of the clay fraction (0-dim mode) 	{IMPOSE_VEG and IMPOSE_SOIL}
+SAND_FRACTION =  0.4 
+
 # REINF_SLOPE ([-]) :  Slope coef for reinfiltration  	{IMPOSE_VEG}
 REINF_SLOPE =  0.1 
@@ -1378,7 +1483,4 @@
 GET_SLOPE =  n 
 
-# LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(LAI_MAP)}
-LAI_FILE =  lai2D.nc 
-
 # LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAI_MAP}
 LAI_FILE =  lai2D.nc 
@@ -1387,18 +1489,6 @@
 RENORM_LAI =  n 
 
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAND_USE}
+# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{}
 VEGETATION_FILE =  PFTmap.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
 
 # SOILCLASS_FILE ([FILE]) :  Name of file from which soil types are read 	{NOT(IMPOSE_VEG)}
@@ -1411,18 +1501,21 @@
 TOPOGRAPHY_FILE =  cartepente2d_15min.nc 
 
+# WOODHARVEST_FILE ([FILE]) :  Name of file from which the wood harvest will be read 	{DO_WOOD_HARVEST}
+WOODHARVEST_FILE =  woodharvest.nc 
+
 # SOILALB_FILE ([FILE]) :  Name of file from which the bare soil albedo 	{NOT(IMPOSE_AZE)}
 SOILALB_FILE =  soils_param.nc 
 
+# ALB_BG_FILE ([FILE]) :  Name of file from which the background albedo is read  	{ALB_BG_MODIS}
+ALB_BG_FILE =  alb_bg.nc 
+
 # CDRAG_FROM_GCM ([FLAG]) :  Keep cdrag coefficient from gcm. 	{OK_SECHIBA}
 CDRAG_FROM_GCM =  y 
 
-# DIFFUCO_LEAFCI ([ppm]) :  Initial leaf CO2 level if not found in restart 	{OK_SECHIBA}
-DIFFUCO_LEAFCI =  233. 
-
-# ALLOW_WEATHERGEN ([FLAG]) :  Allow weather generator to create data 	{}
-ALLOW_WEATHERGEN =  n 
-
-# FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
-FORCING_FILE =  forcing_file.nc 
+# N_FERTIL_FILE (- ) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# N_FERTIL_FILE (-) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
 
 # ENERBIL_TSURF (Kelvin [K]) :  Initial temperature if not found in restart 	{OK_SECHIBA}
@@ -1432,92 +1525,77 @@
 ENERBIL_EVAPOT =  0.0 
 
+# BEDROCK_FLAG ([FLAG]) :  Flag to consider bedrock at deeper layers. 	{}
+BEDROCK_FLAG =  0 
+
 # THERMOSOIL_TPRO (Kelvin [K]) :  Initial soil temperature profile if not found in restart 	{OK_SECHIBA}
 THERMOSOIL_TPRO =  280. 
 
-# HYDROL_OK_HDIFF ([FLAG]) :  do horizontal diffusion? 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)  }
-HYDROL_OK_HDIFF =  n 
-
-# HYDROL_SNOW ([kg/m^2]) :  Initial snow mass if not found in restart 	{OK_SECHIBA}
-HYDROL_SNOW =  0.0 
-
-# HYDROL_SNOWAGE ([days]) :  Initial snow age if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOWAGE =  0.0 
-
-# HYDROL_SNOW_NOBIO ([m]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO =  0.0 
-
-# HYDROL_SNOW_NOBIO_AGE ([days]) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO_AGE =  0.0 
-
-# HYDROL_HUMR ([-]) :  Initial soil moisture stress if not found in restart 	{OK_SECHIBA }
-HYDROL_HUMR =  1.0 
-
-# HYDROL_BQSB ([kg/m^2]) :  Initial restart deep soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_BQSB =  999999.  
-
-# HYDROL_GQSB ([kg/m^2]) :  Initial upper soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_GQSB =  0.0 
-
-# HYDROL_DSG ([m]) :  Initial upper reservoir depth if not found in restart 	{OK_SECHIBA }
-HYDROL_DSG =  0.0 
-
-# HYDROL_QSV ([kg/m^2]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA }
-HYDROL_QSV =  0.0 
-
-# HYDROL_DSP ([m]) :  Initial dry soil above upper reservoir if not found in restart 	{OK_SECHIBA }
-HYDROL_DSP =  999999. 
-
-# HYDROL_TAU_HDIFF ([seconds]) :  time scale (s) for horizontal diffusion of water 	{HYDROL_OK_HDIFF}
-HYDROL_TAU_HDIFF =  86400. 
-
-# CHECK_CWRR ([FLAG]) :  Should we check detailed CWRR water balance ? 	{HYDROL_CWRR}
-CHECK_CWRR =  n 
-
-# DO_PONDS ([FLAG]) :  Should we include ponds  	{HYDROL_CWRR}
+# SOIL_REFTEMP_FILE ([FILE]) :  File with climatological soil temperature 	{READ_REFTEMP}
+SOIL_REFTEMP_FILE =  reftemp.nc 
+
+# DO_PONDS ([FLAG]) :  Should we include ponds  	{}
 DO_PONDS =  n 
 
-# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{HYDROL_CWRR}
+# FROZ_FRAC_CORR  ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+FROZ_FRAC_CORR  =  1.0 
+
+# MAX_FROZ_HYDRO ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+MAX_FROZ_HYDRO =  1.0 
+
+# SMTOT_CORR ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+SMTOT_CORR =  2.0 
+
+# DO_RSOIL ([FLAG]) :  Should we reduce soil evaporation with a soil resistance 	{}
+DO_RSOIL =  n 
+
+# OK_DYNROOT ([FLAG]) :  Calculate dynamic root profile to optimize soil moisture usage   	{}
+OK_DYNROOT =  n 
+
+# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{}
 CWRR_N_VANGENUCHTEN =  1.89, 1.56, 1.31 
 
-# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{HYDROL_CWRR}
+# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{}
 CWRR_A_VANGENUCHTEN =  0.0075, 0.0036, 0.0019 
 
-# VWC_RESIDUAL ([mm]  ) :  Residual soil water content 	{HYDROL_CWRR}
+# VWC_RESIDUAL ([m3/m3]  ) :  Residual soil water content 	{}
 VWC_RESIDUAL =  0.065, 0.078, 0.095 
 
-# VWC_SAT ([-]  ) :  Saturated soil water content 	{HYDROL_CWRR}
+# VWC_SAT ([m3/m3]  ) :  Saturated soil water content 	{}
 VWC_SAT =  0.41, 0.43, 0.41 
 
-# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{HYDROL_CWRR }
+# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{}
 CWRR_KS  =  1060.8, 249.6, 62.4 
 
-# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{HYDROL_CWRR}
+# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{}
 WETNESS_TRANSPIR_MAX =  0.5, 0.5, 0.5 
 
-# VWC_FC  ([-]   ) :  Volumetric water content field capacity 	{HYDROL_CWRR}
+# VWC_FC  ([m3/m3]   ) :  Volumetric water content field capacity 	{}
 VWC_FC  =  0.32, 0.32, 0.32 
 
-# VWC_WP ([-]   ) :  Volumetric water content Wilting pt 	{HYDROL_CWRR}
+# VWC_WP ([m3/m3]   ) :  Volumetric water content Wilting pt 	{}
 VWC_WP =  0.10, 0.10, 0.10  
 
-# VWC_MIN_FOR_WET_ALB ([-]  ) :  Vol. wat. cont. above which albedo is cst 	{HYDROL_CWRR}
+# VWC_MIN_FOR_WET_ALB ([m3/m3]  ) :  Vol. wat. cont. above which albedo is cst 	{}
 VWC_MIN_FOR_WET_ALB =  0.25, 0.25, 0.25 
 
-# VWC_MAX_FOR_DRY_ALB ([-]   ) :  Vol. wat. cont. below which albedo is cst 	{HYDROL_CWRR}
+# VWC_MAX_FOR_DRY_ALB ([m3/m3]   ) :  Vol. wat. cont. below which albedo is cst 	{}
 VWC_MAX_FOR_DRY_ALB =  0.1, 0.1, 0.1 
 
-# HYDROL_MOISTURE_CONTENT () :  Soil moisture on each soil tile and levels 	{HYDROL_CWRR       }
+# HYDROL_MOISTURE_CONTENT ([m3/m3]) :  Soil moisture on each soil tile and levels 	{}
 HYDROL_MOISTURE_CONTENT =  0.3 
 
-# US_INIT () :  US_NVM_NSTM_NSLM 	{HYDROL_CWRR       }
+# US_INIT ([-]) :  US_NVM_NSTM_NSLM 	{}
 US_INIT =  0.0 
 
-# FREE_DRAIN_COEF ([-]) :  Coefficient for free drainage at bottom, dimension nstm 	{HYDROL_CWRR       }
+# ZWT_FORCE ([m]) :  Prescribed water depth, dimension nstm 	{}
+ZWT_FORCE =  -9999. -9999. -9999. 
+
+# FREE_DRAIN_COEF ([-]) :  Coefficient for free drainage at bottom, dimension nstm 	{}
 FREE_DRAIN_COEF =  1.0 1.0 1.0 
 
-# WATER_TO_INFILT () :  Water to be infiltrated on top of the soil 	{HYDROL_CWRR    }
+# WATER_TO_INFILT ([mm]) :  Water to be infiltrated on top of the soil 	{}
 WATER_TO_INFILT =  0.0 
 
-# EVAPNU_SOIL () :  Bare soil evap on each soil if not found in restart 	{HYDROL_CWRR  }
+# EVAPNU_SOIL ([mm]) :  Bare soil evap on each soil if not found in restart 	{}
 EVAPNU_SOIL =  0.0 
 
@@ -1525,39 +1603,39 @@
 HYDROL_SNOW =  0.0 
 
-# HYDROL_SNOWAGE () :  Initial snow age if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOWAGE (***) :  Initial snow age if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOWAGE =  0.0 
 
-# HYDROL_SNOW_NOBIO () :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO ([mm]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO =  0.0 
 
-# HYDROL_SNOW_NOBIO_AGE () :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO_AGE (***) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO_AGE =  0.0 
 
-# HYDROL_QSV () :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
+# HYDROL_QSV ([mm]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
 HYDROL_QSV =  0.0 
 
-# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_N0  =  0.95 
-
-# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_POWER =  0.34 
-
-# CWRR_AKS_A0  ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_A0  =  0.00012 
-
-# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_POWER =  0.53 
-
-# KFACT_DECAY_RATE ([-]) :  Factor for Ks decay with depth 	{HYDROL_CWRR }
+# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_N0  =  0.0 
+
+# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_POWER =  0.0 
+
+# CWRR_AKS_A0  ([1/mm]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_A0  =  0.0 
+
+# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_POWER =  0.0 
+
+# KFACT_DECAY_RATE ([1/m]) :  Factor for Ks decay with depth 	{}
 KFACT_DECAY_RATE =  2.0 
 
-# KFACT_STARTING_DEPTH ([-]) :  Depth for compacted value of Ks  	{HYDROL_CWRR }
+# KFACT_STARTING_DEPTH ([m]) :  Depth for compacted value of Ks  	{}
 KFACT_STARTING_DEPTH =  0.3 
 
-# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{HYDROL_CWRR }
+# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{}
 KFACT_MAX =  10.0 
 
-# ROUTING_TIMESTEP ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
-ROUTING_TIMESTEP =  86400. 
+# DT_ROUTING  ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
+DT_ROUTING  =  86400. 
 
 # ROUTING_RIVERS ([-]) :  Number of rivers  	{RIVER_ROUTING}
@@ -1574,11 +1652,11 @@
 
 # SLOW_TCST ([days]) :  Time constant for the slow reservoir  	{RIVER_ROUTING }
-SLOW_TCST =  n 
+SLOW_TCST =  25.0  
 
 # FAST_TCST ([days]) :  Time constant for the fast reservoir  	{RIVER_ROUTING }
-FAST_TCST =  fast_tcst_cwrr or fast_tcst_chois depending on flag HYDROL_CWRR 
+FAST_TCST =  3.0  
 
 # STREAM_TCST ([days]) :  Time constant for the stream reservoir  	{RIVER_ROUTING}
-STREAM_TCST =  stream_tcst_cwrr or stream_tcst_chois depending on flag HYDROL_CWRR 
+STREAM_TCST =  0.24 
 
 # FLOOD_TCST ([days]) :  Time constant for the flood reservoir  	{RIVER_ROUTING}
@@ -1600,9 +1678,12 @@
 POND_CRI =  2000. 
 
+# MAX_LAKE_RESERVOIR ([kg/m2(routing area)] ) :  Maximum limit of water in lake_reservoir 	{RIVER_ROUTING}
+MAX_LAKE_RESERVOIR =  7000 
+
 # RIVER_DESC ([FLAG]) :  Writes out a description of the rivers 	{RIVER_ROUTING}
 RIVER_DESC =  n 
 
 # RIVER_DESC_FILE ([FILE]) :  Filename in which we write the description of the rivers. If suffix is ".nc" a netCDF file is created 	{RIVER_DESC}
-RIVER_DESC_FILE =  river_desc.txt 
+RIVER_DESC_FILE =  river_desc.nc 
 
 # ROUTING_FILE ([FILE]) :  Name of file which contains the routing information 	{RIVER_ROUTING}
@@ -1633,8 +1714,8 @@
 FORCESOIL_NB_YEAR =  1 
 
-# REFTEMP_FILE ([FILE]) :  Name of file from which the reference temperature can be read 	{OK_STOMATE}
-REFTEMP_FILE =  NONE 
-
 # XIOS_ORCHIDEE_OK ([FLAG]) :  Use XIOS for writing diagnostics file 	{}
-XIOS_ORCHIDEE_OK =  n 
-
+XIOS_ORCHIDEE_OK =  y  
+
+# XIOS_INTERPOLATION ([FLAG]) :  Actiave reading and intrepolation using XIOS 	{XIOS_ORCHIDEE_OK}
+XIOS_INTERPOLATION =  n 
+
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/README
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/README	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/README	(revision 5633)
@@ -35,8 +35,9 @@
  3) Call ins_job as well under /config/ORCHIDEE_OL/SPINUP and the needed subdirectories (for instance /config/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC_STO)
 
- 4) Due to a problem with the current libIGCM version (libIGCM/trunk rev 1424), comment the following lines in libIGCM/libIGCM_com/libIGCM_com.ksh
-    #  else
-    #    IGCM_debug_Exit "This compiler version is not yet supported : ${compilerVersion}" 
- 
+ 4) If running on Irene, due to a problem with the current libIGCM version (libIGCM/trunk rev 1424), comment the following lines in libIGCM/libIGCM_sys/libIGCM_sys_irene.ksh
+#  else
+#    IGCM_debug_Exit "This compiler version is not yet supported : ${compilerVersion}"
+In addition, in case working on another project than gen6328, modify the line "export BRIDGE_MSUB_PROJECT=gen6328" in Job_ENSEMBLE file.
+
  5) Then, for executing the job and launching all the sub jobs, simply type, for an ENSEMBLE simulation based on ensemble.card
   myprompt> ./Job_ENSEMBLE ensemble > out.Job_ENSEMBLE 
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/config.card
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/config.card	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/ENSEMBLE/config.card	(revision 5633)
@@ -20,7 +20,7 @@
 ExperimentName=ensemble
 #----- ARCHIVE : path for archive directory in which IGCM_OUT directory will be created.
-#For example at curie: ARCHIVE=$WORKDIR or ARCHIVE=$SCRATCHDIR
+#For example at irene: ARCHIVE=$CCCWORKDIR or ARCHIVE=$CCCSCRATCHDIR
 #at obelix: ARCHIVE=/home/scratch01/$LOGIN
-ARCHIVE=$SCRATCHDIR
+ARCHIVE=$CCCSCRATCHDIR
 #============================
 #-- leap, noleap, 360d
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/PARAM/orchidee.default
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/PARAM/orchidee.default	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/PARAM/orchidee.default	(revision 5633)
@@ -6,5 +6,5 @@
 #
 #*******************************************************************************************
-#                    Namelist for ORCHIDEE (trunk revision 2135) 
+#                    Namelist for ORCHIDEE 
 #*******************************************************************************************
 #
@@ -18,12 +18,15 @@
 #*******************************************************************************************
 
-# DEBUG_INFO ([FLAG] ) :  Flag for debug information 	{[-]}
-DEBUG_INFO =  n 
+# LWDOWN_CONS ([FLAG]) :  Conserve longwave downwelling radiation in the forcing 	{}
+LWDOWN_CONS =  n 
+
+# SWDOWN_CONS ([FLAG]) :  Conserve shortwave downwelling radiation in the forcing 	{}
+SWDOWN_CONS =  LWDOWN_CONS 
 
 # FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
 FORCING_FILE =  forcing_file.nc 
 
-# SPLIT_DT ([-]) :  splits the timestep imposed by the forcing 	{NOT(WEATHERGEN)}
-SPLIT_DT =  12 
+# DT_SECHIBA ([seconds]) :  Time-step of the SECHIBA component 	{NOT(WEATHERGEN)}
+DT_SECHIBA =  1800. 
 
 # RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions 	{[-]}
@@ -40,5 +43,5 @@
 
 # TIME_LENGTH ([seconds, days, months, years]) :  Length of the integration in time. 	{[-]}
-TIME_LENGTH =  DEF 
+TIME_LENGTH =  Full length of the forcing file  
 
 # RELAXATION ([FLAG]) :  method of forcing 	{[-]}
@@ -48,17 +51,8 @@
 RELAX_A =  1.0 
 
-# NO_INTER  ([FLAG]) :  No interpolation IF split is larger than 1 	{[-]}
-NO_INTER  =  y 
-
-# INTER_LIN ([FLAG]) :  Interpolation IF split is larger than 1 	{[-]}
-INTER_LIN =  n 
-
 # SPRED_PREC ([-]) :  Spread the precipitation. 	{[-]}
-SPRED_PREC =  1 
-
-# NETRAD_CONS ([FLAG]) :  Conserve net radiation in the forcing 	{INTER_LIN}
-NETRAD_CONS =  y 
-
-# ATM_CO2 ([ppm]) :  Value for atm CO2 	{[-]}
+SPRED_PREC =  Half of the forcing time step or uniform, depending on dt_force and dt_sechiba 
+
+# ATM_CO2 ([ppm]) :  Value to precribe atmosoheric CO2 	{[FORCE_CO2_VEG=y or Offline mode]}
 ATM_CO2 =  350. 
 
@@ -87,4 +81,13 @@
 ZONAL_RES =  2. 
 
+# HEIGHT_LEV1 ([m]) :  Height at which T and Q are given 	{offline mode}
+HEIGHT_LEV1 =  2.0 
+
+# HEIGHT_LEVW ([m]) :  Height at which the wind is given 	{offline mode}
+HEIGHT_LEVW =  10.0 
+
+# NBUFF (-) :  Number of time steps of data to buffer between each reading of the forcing file 	{OFF_LINE}
+NBUFF =  1 
+
 # IPPREC ([-] ) :  Use prescribed values 	{ALLOW_WEATHERGEN}
 IPPREC =  0 
@@ -102,6 +105,6 @@
 DUMP_WEATHER_GATHERED =  y 
 
-# HEIGHT_LEV1 ([m]) :   	{DUMP_WEATHER}
-HEIGHT_LEV1 =  10. 
+# HEIGHT_LEV1_DUMP ([m]) :   	{DUMP_WEATHER}
+HEIGHT_LEV1_DUMP =  10. 
 
 #*******************************************************************************************
@@ -109,30 +112,9 @@
 #*******************************************************************************************
 
-# LONGPRINT ([FLAG]) :  ORCHIDEE will print more messages 	{OK_SECHIBA}
-LONGPRINT =  n 
-
-# CHECKTIME ([FLAG]) :  ORCHIDEE will print messages on time 	{OK_SECHIBA}
-CHECKTIME =  n 
-
 # SOILTYPE_CLASSIF ([-]) :  Type of classification used for the map of soil types  	{!IMPOSE_VEG}
 SOILTYPE_CLASSIF =  zobler 
 
-# ORCHIDEE_WATCHOUT ([FLAG]) :  ORCHIDEE will write out its forcing to a file 	{}
-ORCHIDEE_WATCHOUT =  n 
-
-# DT_WATCHOUT ([seconds]) :  ORCHIDEE will write out with this frequency 	{ORCHIDEE_WATCHOUT}
-DT_WATCHOUT =  dt 
-
-# WATCHOUT_FILE ([FILE]) :  Filenane for the ORCHIDEE forcing file 	{ORCHIDEE_WATCHOUT}
-WATCHOUT_FILE =  orchidee_watchout.nc 
-
 # RIVER_ROUTING ([FLAG]) :  Decides if we route the water or not 	{OK_SECHIBA}
-RIVER_ROUTING =  n 
-
-# HYDROL_CWRR ([FLAG]) :  Allows to switch on the multilayer hydrology of CWRR 	{OK_SECHIBA}
-HYDROL_CWRR =  n 
-
-# HYDROL_SOIL_DEPTH ([m]) :  Total depth of soil reservoir 	{OK_SECHIBA }
-HYDROL_SOIL_DEPTH =  4./ 2. (if HYDROL_CWRR) 
+RIVER_ROUTING =  y 
 
 # DO_IRRIGATION ([FLAG]) :  Should we compute an irrigation flux  	{RIVER_ROUTING }
@@ -142,23 +124,20 @@
 DO_FLOODPLAINS =  n 
 
-# CHECK_WATERBAL ([FLAG]  ) :  Should we check the global water balance  	{OK_SECHIBA}
-CHECK_WATERBAL =  n 
-
-# STOMATE_OK_CO2 ([FLAG]) :  Activate CO2? 	{OK_SECHIBA }
-STOMATE_OK_CO2 =  n 
-
-# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA and OK_CO2}
-STOMATE_OK_STOMATE =  n 
+# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA}
+STOMATE_OK_STOMATE =  y 
+
+# DO_WOOD_HARVEST ([FLAG]) :  Activate Wood Harvest ? 	{OK_STOMATE}
+DO_WOOD_HARVEST =  y 
 
 # STOMATE_OK_DGVM ([FLAG]) :  Activate DGVM? 	{OK_STOMATE}
 STOMATE_OK_DGVM =  n 
 
-# DIFFUCO_OK_INCA ([FLAG]) :  Activate DIFFUCO_INCA? 	{OK_SECHIBA}
-DIFFUCO_OK_INCA =  n 
-
-# LEAFAGE_OK_INCA ([FLAG]) :  Activate LEAFAGE? 	{DIFFUCO_OK_INCA}
-LEAFAGE_OK_INCA =  n 
-
-# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{DIFFUCO_OK_INCA }
+# CHEMISTRY_BVOC ([FLAG]) :  Activate calculations for BVOC 	{OK_SECHIBA}
+CHEMISTRY_BVOC =  n 
+
+# CHEMISTRY_LEAFAGE ([FLAG]) :  Activate LEAFAGE? 	{CHEMISTRY_BVOC}
+CHEMISTRY_LEAFAGE =  n 
+
+# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{CHEMISTRY_BVOC }
 CANOPY_EXTINCTION  =  n 
 
@@ -166,15 +145,12 @@
 CANOPY_MULTILAYER =  n 
 
-# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{DIFFUCO_OK_INCA }
+# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{CHEMISTRY_BVOC }
 NOx_RAIN_PULSE =  n 
 
-# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{DIFFUCO_OK_INCA }
+# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{CHEMISTRY_BVOC }
 NOx_BBG_FERTIL =  n 
 
-# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{DIFFUCO_OK_INCA }
+# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{CHEMISTRY_BVOC }
 NOx_FERTILIZERS_USE =  n 
-
-# STOMATE_WATCHOUT ([FLAG]) :  STOMATE does minimum service 	{OK_SECHIBA }
-STOMATE_WATCHOUT =  n 
 
 # NVM ([-]) :  number of PFTs   	{OK_SECHIBA or OK_STOMATE}
@@ -184,4 +160,67 @@
 IMPOSE_PARAM =  y 
 
+# DEPTH_MAX_T (m) :  Maximum depth of the soil thermodynamics 	{}
+DEPTH_MAX_T =  90.0 
+
+# DEPTH_MAX_H (m) :  Maximum depth of soil moisture 	{}
+DEPTH_MAX_H =  2.0 
+
+# DEPTH_TOPTHICK (m) :  Thickness of upper most Layer  	{}
+DEPTH_TOPTHICK =  9.77517107e-04 
+
+# DEPTH_CSTTHICK (m) :  Depth at which constant layer thickness start 	{}
+DEPTH_CSTTHICK =  DEPTH_MAX_H  
+
+# REFINEBOTTOM (-) :  Depth at which the hydrology layers will be refined towards the bottom. 	{}
+REFINEBOTTOM =  .FALSE. 
+
+# DEPTH_GEOM (m) :  Depth at which we resume geometrical increases for temperature 	{}
+DEPTH_GEOM =  DEPTH_MAX_H  
+
+# RATIO_GEOM_BELOW (-) :  Ratio of the geometrical series defining the thickness below DEPTH_GEOM 	{}
+RATIO_GEOM_BELOW =  2 
+
+# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
+ALMA_OUTPUT =  n 
+
+# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
+OUTPUT_FILE =  sechiba_history.nc 
+
+# WRITE_STEP ([seconds]) :  Frequency in seconds for sechiba_history.nc file with IOIPSL 	{OK_SECHIBA, NOT XIOS_ORCHIDEE_OK}
+WRITE_STEP =  86400. 
+
+# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
+SECHIBA_HISTLEVEL =  5 
+
+# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
+SECHIBA_HISTFILE2 =  n 
+
+# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
+WRITE_STEP2 =  1800.0 
+
+# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
+SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
+
+# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
+SECHIBA_HISTLEVEL2 =  1 
+
+# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_OUTPUT_FILE =  stomate_history.nc 
+
+# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
+STOMATE_HIST_DT =  10. 
+
+# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
+
+# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
+STOMATE_IPCC_HIST_DT =  0. 
+
+# OK_HISTSYNC ([FLAG]) :  Syncronize and write IOIPSL output files at each time step 	{}
+OK_HISTSYNC =  FALSE 
+
+# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
+STOMATE_HISTLEVEL =  10 
+
 # SECHIBA_restart_in ([FILE]) :  Name of restart to READ for initial conditions 	{OK_SECHIBA }
 SECHIBA_restart_in =  NONE 
@@ -190,51 +229,15 @@
 SECHIBA_rest_out =  sechiba_rest_out.nc 
 
-# SECHIBA_reset_time ([FLAG]) :  Override the time from the restart files for SECHIBA and STOMATE 	{OK_SECHIBA}
-SECHIBA_reset_time =  y 
-
-# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
+# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE}
 STOMATE_RESTART_FILEIN =  NONE 
 
-# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
-STOMATE_RESTART_FILEOUT =  stomate_restart.nc 
-
-# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
-ALMA_OUTPUT =  n 
-
-# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
-OUTPUT_FILE =  sechiba_history.nc 
-
-# WRITE_STEP ([seconds]) :  Frequency in seconds at which to WRITE output 	{OK_SECHIBA}
-WRITE_STEP =  86400. 
-
-# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
-SECHIBA_HISTLEVEL =  5 
-
-# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
-SECHIBA_HISTFILE2 =  n 
-
-# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
-WRITE_STEP2 =  1800.0 
-
-# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
-SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
-
-# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
-SECHIBA_HISTLEVEL2 =  1 
-
-# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_OUTPUT_FILE =  stomate_history.nc 
-
-# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
-STOMATE_HIST_DT =  10. 
-
-# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
-
-# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
-STOMATE_IPCC_HIST_DT =  0. 
-
-# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
-STOMATE_HISTLEVEL =  10 
+# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE}
+STOMATE_RESTART_FILEOUT =  stomate_rest_out.nc 
+
+# FORCE_CO2_VEG ([FLAG]) :  Flag to force the value of atmospheric CO2 for vegetation. 	{Only in coupled mode}
+FORCE_CO2_VEG =  FALSE 
+
+# TAU_OUTFLOW ([days]) :  Number of days over which the coastal- and riverflow will be distributed 	{Only in coupled mode}
+TAU_OUTFLOW =  0 
 
 # ECCENTRICITY ([-]) :  Use prescribed values 	{ALLOW_WEATHERGEN}
@@ -247,7 +250,4 @@
 OBLIQUITY =  23.446 
 
-# OK_THROUGHFALL_PFT ([FLAG]) :  Activate use of PERCENT_THROUGHFALL_PFT 	{HYDROL_CWRR}
-OK_THROUGHFALL_PFT =  FALSE 
-
 # PFT_TO_MTC ([-]) :  correspondance array linking a PFT to MTC 	{OK_SECHIBA or OK_STOMATE}
 PFT_TO_MTC =  1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 
@@ -271,4 +271,10 @@
 SLOWPROC_HEIGHT =  0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1., 1. 
 
+# Z0_OVER_HEIGHT ([-] ) :  factor to calculate roughness height from height of canopy  	{OK_SECHIBA}
+Z0_OVER_HEIGHT =  0., 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625 
+
+# RATIO_Z0M_Z0H ([-]) :  Ratio between z0m and z0h 	{OK_SECHIBA}
+RATIO_Z0M_Z0H =  1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0  
+
 # TYPE_OF_LAI ([-]) :  Type of behaviour of the LAI evolution algorithm  	{OK_SECHIBA}
 TYPE_OF_LAI =  inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter 
@@ -283,26 +289,29 @@
 VCMAX_FIX =  0., 40., 50., 30., 35., 40.,30., 40., 35., 60., 60., 70., 70. 
 
-# DOWNREGULATION_CO2_COEFF ([-]) :  coefficient for CO2 downregulation (unitless) 	{OK_CO2}
-DOWNREGULATION_CO2_COEFF =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
-
-# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{OK_CO2}
+# DOWNREG_CO2 ([-]) :  coefficient for CO2 downregulation (unitless) 	{}
+DOWNREG_CO2 =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
+
+# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{}
 E_KmC =  -9999.,  79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430. 
 
-# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{OK_CO2}
+# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{}
 E_KmO =  -9999., 36380.,  36380.,  36380.,  36380.,  36380., 36380., 36380., 36380., 36380., 36380., 36380., 36380. 
 
-# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{OK_CO2}
+# E_Sco ([J mol-1]) :  Energy of activation for Sco 	{}
+E_Sco =  -9999., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460. 
+
+# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{}
 E_gamma_star =  -9999., 37830.,  37830.,  37830.,  37830.,  37830., 37830., 37830., 37830., 37830., 37830., 37830., 37830. 
 
-# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{OK_CO2}
+# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{}
 E_Vcmax =  -9999., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 67300., 71513., 67300. 
 
-# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{OK_CO2}
+# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{}
 E_Jmax =  -9999., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 77900., 49884., 77900.  
 
-# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 aSV =  -9999., 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 641.64, 668.39, 641.64  
 
-# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 bSV =  -9999., -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, 0., -1.07, 0.  
 
@@ -313,21 +322,30 @@
 TPHOTO_MAX =  -9999., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55. 
 
-# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 aSJ =  -9999., 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 630., 659.70, 630.  
 
-# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 bSJ =  -9999., -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, 0., -0.75, 0.  
 
-# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{OK_CO2}
+# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{}
 D_Vcmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{OK_CO2}
+# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{}
 D_Jmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{OK_CO2}
+# E_gm  ([J mol-1] ) :  Energy of activation for gm  	{ }
+E_gm  =  -9999., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., -9999., 49600., -9999.  
+
+# S_gm  ([J K-1 mol-1] ) :  Entropy term for gm  	{ }
+S_gm  =  -9999., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., -9999., 1400., -9999.  
+
+# D_gm  ([J mol-1] ) :  Energy of deactivation for gm  	{ }
+D_gm  =  -9999., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., -9999., 437400., -9999.  
+
+# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{}
 E_Rd =  -9999., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390. 
 
 # VCMAX25 ([micromol/m^2/s]) :  Maximum rate of Rubisco activity-limited carboxylation at 25Â°C 	{OK_STOMATE}
-VCMAX25 =  -9999., 65., 65., 35., 45., 55., 35., 45., 35., 70., 70., 70., 70. 
+VCMAX25 =  -9999., 45.0, 45.0, 35.0, 40.0, 50.0, 45.0, 35.0, 35.0, 50.0, 50.0, 60.0, 60.0 
 
 # ARJV ([mu mol e- (mu mol CO2)-1]) :  a coefficient of the linear regression (a+bT) defining the Jmax25/Vcmax25 ratio  	{OK_STOMATE}
@@ -337,54 +355,72 @@
 BRJV =  -9999., -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, 0., -0.035, 0. 
 
-# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{OK_CO2}
+# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{}
 KmC25 =  -9999., 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 650., 404.9, 650. 
 
-# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{OK_CO2}
+# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{}
 KmO25 =  -9999., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 450000., 278400., 450000. 
 
-# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{OK_CO2}
+# Sco25 ([bar bar-1]) :  Relative CO2 /O2 specificity factor for Rubisco at 25ÃÂ°C 	{}
+Sco25 =  -9999., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2590., 2800., 2590. 
+
+# gm25  ([mol m-2 s-1 bar-1] ) :  Mesophyll diffusion conductance at 25ÃÂÃÂ°C  	{ }
+gm25  =  -9999., 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, -9999., 0.4, -9999.  
+
+# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{}
 gamma_star25 =  -9999., 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75 
 
-# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
-a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85 
-
-# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
+# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
+a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.72, 0.85, 0.72 
+
+# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
 b1 =  -9999., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.20, 0.14, 0.20 
 
-# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{OK_CO2}
+# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{}
 g0 =  -9999., 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.01875, 0.00625, 0.01875  
 
-# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{OK_CO2}
+# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{}
 h_protons =  -9999., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4.  
 
-# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{OK_CO2}
+# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{}
 fpsir =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.4, -9999., 0.4  
 
-# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{OK_CO2}
+# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{}
 fQ =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 1., -9999., 1. 
 
-# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{OK_CO2}
+# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{}
 fpseudo =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{OK_CO2}
+# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{}
 kp =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.7, -9999., 0.7 
 
-# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{OK_CO2}
+# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{}
 alpha =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{OK_CO2}
+# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{}
 gbs =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.003, -9999., 0.003 
 
-# theta ([â]) :  Convexity factor for response of J to irradiance 	{OK_CO2}
+# theta ([â]) :  Convexity factor for response of J to irradiance 	{}
 theta =  -9999., 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7 
 
-# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{OK_CO2}
+# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{}
 alpha_LL =  -9999., 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372 
+
+# STRESS_VCMAX ([-]) :  Stress on vcmax 	{OK_SECHIBA or OK_STOMATE}
+STRESS_VCMAX =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GS ([-]) :  Stress on gs 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GS =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GM ([-]) :  Stress on gm 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GM =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
 
 # EXT_COEFF ([-]) :  extinction coefficient of the Monsi&Seaki relationship (1953) 	{OK_SECHIBA or OK_STOMATE}
 EXT_COEFF =  .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5 
 
+# EXT_COEFF_VEGETFRAC ([-]) :  extinction coefficient used for the calculation of the bare soil fraction  	{OK_SECHIBA or OK_STOMATE}
+EXT_COEFF_VEGETFRAC =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
 # HYDROL_HUMCSTE ([m]) :  Root profile 	{OK_SECHIBA}
-HYDROL_HUMCSTE =  humcste_cwrr or humcste_mct depending on flag HYDROL_CWRR 
+HYDROL_HUMCSTE =  humcste_ref2m or humcste_ref4m depending on zmaxh 
 
 # PREF_SOIL_VEG ([-]        ) :  The soil tile number for each vegetation 	{OK_SECHIBA or OK_STOMATE}
@@ -403,65 +439,128 @@
 WMAX_VEG =  150., 150., 150., 150., 150., 150., 150.,150., 150., 150., 150., 150., 150. 
 
-# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy 	{OK_SECHIBA OR HYDROL_CWRR}
-PERCENT_THROUGHFALL_PFT =  30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 
-
-# SNOWA_AGED ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow) 	{OK_SECHIBA}
-SNOWA_AGED =  0.35, 0., 0., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.18, 0.18, 0.18, 0.18 
-
-# SNOWA_DEC ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow 	{OK_SECHIBA}
-SNOWA_DEC =  0.45, 0.,  0., 0.06, 0.06, 0.11, 0.06, 0.11, 0.11, 0.52,0.52, 0.52, 0.52 
+# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy. Default value depend on run mode. 	{OK_SECHIBA}
+PERCENT_THROUGHFALL_PFT =  Case offline [0. 0. 0....] else [30. 30. 30.....] 
+
+# SNOWA_AGED_VIS ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), visible albedo 	{OK_SECHIBA}
+SNOWA_AGED_VIS =  0.74, 0.0, 0.0, 0.08, 0.24, 0.07, 0.18, 0.18, 0.33, 0.57, 0.57, 0.57, 0.57 
+
+# SNOWA_AGED_NIR ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), near infrared albedo 	{OK_SECHIBA}
+SNOWA_AGED_NIR =  0.50, 0.0, 0.0, 0.10, 0.37, 0.08, 0.16, 0.17, 0.27, 0.44, 0.44, 0.44, 0.44   
+
+# SNOWA_DEC_VIS ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, visible albedo 	{OK_SECHIBA}
+SNOWA_DEC_VIS =  0.21, 0.0, 0.0, 0.14, 0.08, 0.17, 0.05, 0.06, 0.09, 0.15, 0.15, 0.15, 0.15  
+
+# SNOWA_DEC_NIR ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, near infrared albedo 	{OK_SECHIBA}
+SNOWA_DEC_NIR =  0.13, 0.0, 0.0, 0.10, 0.10, 0.16, 0.04, 0.07, 0.08, 0.12, 0.12, 0.12, 0.12 
 
 # ALB_LEAF_VIS ([-]) :  leaf albedo of vegetation type, visible albedo 	{OK_SECHIBA}
-ALB_LEAF_VIS =  .00, .04, .06, .06, .06,.06, .06, .06, .06, .10, .10, .10, .10 
+ALB_LEAF_VIS =  0.00, 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.06, 0.06, 0.06, 0.06 
 
 # ALB_LEAF_NIR ([-]) :  leaf albedo of vegetation type, near infrared albedo 	{OK_SECHIBA}
-ALB_LEAF_NIR =  .00, .20, .22, .22, .22,.22, .22, .22, .22, .30, .30, .30, .30  
-
-# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{DIFFUCO_OK_INCA}
+ALB_LEAF_NIR =  0.00, 0.23, 0.18, 0.18, 0.20, 0.24, 0.15, 0.26, 0.20, 0.24, 0.27, 0.28, 0.26 
+
+# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{CHEMISTRY_BVOC}
 ISO_ACTIVITY =  0.5, 1.5, 1.5, 0.5 
 
-# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{DIFFUCO_OK_INCA}
+# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{CHEMISTRY_BVOC}
 METHANOL_ACTIVITY =  1., 1., 0.5, 0.5 
 
-# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 8., 8., 16., 24., 5., 5. 
-
-# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MONOTERPENE =  0., 0.8, 0.8, 2.4, 1.2, 0.8, 2.4, 2.4, 2.4, 0.8, 1.2, 0.2, 0.2 
-
-# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{DIFFUCO_OK_INCA }
+# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 18., 0.5, 12., 18., 5., 5. 
+
+# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MONOTERPENE =  0., 2.0, 2.0, 1.8, 1.4, 1.6, 1.8, 1.4, 1.8, 0.8, 0.8,  0.22, 0.22 
+
+# C_LDF_MONO  ([]) :  Monoterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_MONO  =  0.6 
+
+# C_LDF_SESQ  ([]) :  Sesquiterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_SESQ  =  0.5 
+
+# C_LDF_METH  ([]) :  Methanol fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_METH  =  0.8 
+
+# C_LDF_ACET  ([]) :  Acetone fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_ACET  =  0.2 
+
+# EM_FACTOR_APINENE  ([ugC/g/h] ) :  Alfa pinene  emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_APINENE  =  0., 1.35, 1.35, 0.85, 0.95, 0.75, 0.85, 0.60, 1.98, 0.30, 0.30, 0.09, 0.09 
+
+# EM_FACTOR_BPINENE ([ugC/g/h] ) :  Beta pinene  emission factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_BPINENE =  0., 0.30, 0.30, 0.35, 0.25, 0.20, 0.35, 0.12, 0.45, 0.16, 0.12, 0.05, 0.05 
+
+# EM_FACTOR_LIMONENE ([ugC/g/h] ) :  Limonene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_LIMONENE =  0., 0.25, 0.25, 0.20, 0.25, 0.14, 0.20, 0.135, 0.11, 0.19, 0.42, 0.03, 0.03 
+
+# EM_FACTOR_MYRCENE ([ugC/g/h] ) :  Myrcene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_MYRCENE =  0., 0.20, 0.20, 0.12, 0.11, 0.065, 0.12, 0.036, 0.075, 0.08,  0.085, 0.015, 0.015 
+
+# EM_FACTOR_SABINENE ([ugC/g/h] ) :  Sabinene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_SABINENE =  0., 0.20, 0.20, 0.12, 0.17, 0.70, 0.12, 0.50, 0.09, 0.085, 0.075, 0.02, 0.02 
+
+# EM_FACTOR_CAMPHENE  ([ugC/g/h] ) :  Camphene  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_CAMPHENE  =  0., 0.15, 0.15, 0.10, 0.10, 0.01, 0.10, 0.01, 0.07, 0.07, 0.08, 0.01, 0.01 
+
+# EM_FACTOR_3CARENE  ([ugC/g/h] ) :  3-Carene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_3CARENE  =  0., 0.13, 0.13, 0.42, 0.02, 0.055, 0.42,0.025, 0.125, 0.085, 0.085, 0.065, 0.065 
+
+# EM_FACTOR_TBOCIMENE ([ugC/g/h] ) :  T-beta-ocimene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_TBOCIMENE =  0., 0.25, 0.25, 0.13, 0.09, 0.26, 0.13, 0.20, 0.085, 0.18, 0.18, 0.01, 0.01 
+
+# EM_FACTOR_OTHERMONOT ([ugC/g/h] ) :  Other monoterpenes  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_OTHERMONOT =  0., 0.17, 0.17, 0.11, 0.11, 0.125, 0.11, 0.274, 0.01, 0.15, 0.155, 0.035, 0.035 
+
+# EM_FACTOR_SESQUITERP  ([ugC/g/h] ) :  Sesquiterpenes  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_SESQUITERP  =  0., 0.45, 0.45, 0.13, 0.3, 0.36, 0.15, 0.3, 0.25, 0.6, 0.6, 0.08, 0.08 
+
+# C_BETA_MONO  ([]) :  Monoterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_MONO  =  0.1 
+
+# C_BETA_SESQ  ([]) :  Sesquiterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_SESQ  =  0.17 
+
+# C_BETA_METH  ([]) :  Methanol temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_METH  =  0.08 
+
+# C_BETA_ACET  ([]) :  Acetone temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_ACET  =  0.1 
+
+# C_BETA_OXYVOC  ([]) :  Other oxygenated BVOC temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_OXYVOC  =  0.13 
+
+# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{CHEMISTRY_BVOC }
 EM_FACTOR_ORVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{DIFFUCO_OK_INCA}
+# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{CHEMISTRY_BVOC}
 EM_FACTOR_OVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MBO =  0., 0., 0., 20.0, 0., 0., 0., 0., 0., 0., 0., 0., 0. 
-
-# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_METHANOL =  0., 0.6, 0.6, 1.8, 0.9, 0.6, 1.8, 1.8, 1.8, 0.6, 0.9, 2., 2. 
-
-# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETONE =  0., 0.29, 0.29, 0.87, 0.43, 0.29, 0.87, 0.87, 0.87, 0.29, 0.43, 0.07, 0.07  
-
-# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{DIFFUCO_OK_INCA}
-EM_FACTOR_ACETAL =  0., 0.1, 0.1, 0.3, 0.15, 0.1, 0.3, 0.3, 0.3, 0.1, 0.15, 0.025, 0.025 
-
-# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_FORMAL =  0., 0.07, 0.07, 0.2, 0.1, 0.07, 0.2, 0.2, 0.2, 0.07, 0.1, 0.017, 0.017 
-
-# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETIC =  0., 0.002, 0.002, 0.006, 0.003, 0.002, 0.006, 0.006, 0.006, 0.002, 0.003, 0.0005, 0.0005 
-
-# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_FORMIC =  0., 0.01, 0.01, 0.03, 0.015, 0.01, 0.03, 0.03, 0.03, 0.01, 0.015, 0.0025, 0.0025  
-
-# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MBO =  0., 2.e-5, 2.e-5, 1.4, 2.e-5, 2.e-5, 0.14, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5 
+
+# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_METHANOL =  0., 0.8, 0.8, 1.8, 0.9, 1.9, 1.8, 1.8, 1.8, 0.7, 0.9, 2., 2. 
+
+# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETONE =  0., 0.25, 0.25, 0.3, 0.2, 0.33, 0.3, 0.25, 0.25, 0.2, 0.2, 0.08, 0.08 
+
+# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_ACETAL =  0., 0.2, 0.2, 0.2, 0.2, 0.25, 0.25, 0.16, 0.16, 0.12, 0.12, 0.035, 0.02 
+
+# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_FORMAL =  0., 0.04, 0.04, 0.08, 0.04, 0.04, 0.04, 0.04, 0.04, 0.025, 0.025, 0.013, 0.013 
+
+# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETIC =  0., 0.025, 0.025,0.025,0.022,0.08,0.025,0.022,0.013,0.012,0.012,0.008,0.008 
+
+# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_FORMIC =  0., 0.015, 0.015, 0.02, 0.02, 0.025, 0.025, 0.015, 0.015,0.010,0.010,0.008,0.008 
+
+# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_WET =  0., 2.6, 0.06, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.36, 0.36, 0.36, 0.36 
 
-# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_DRY =  0., 8.60, 0.40, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 2.65, 2.65, 2.65, 2.65 
 
-# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{DIFFUCO_OK_INCA }
+# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{CHEMISTRY_BVOC }
 LARCH =  0., 0.015, 0.015, 0.003, 0.005, 0.005, 0.003, 0.005, 0.003, 0.005, 0.005, 0.008, 0.008 
 
@@ -469,9 +568,18 @@
 SLA =  1.5E-2, 1.53E-2, 2.6E-2, 9.26E-3, 2E-2, 2.6E-2, 9.26E-3, 2.6E-2, 1.9E-2, 2.6E-2, 2.6E-2, 2.6E-2, 2.6E-2 
 
+# AVAILABILITY_FACT  ([-]   ) :  Calculate dynamic mortality in lpj_gap, pft dependent parameter 	{OK_STOMATE }
+AVAILABILITY_FACT  =  -9999., 0.14, 0.14, 0.10, 0.10, 0.10, 0.05, 0.05, 0.05, -9999., -9999., -9999., -9999.  
+
+# R0  ([-]    ) :  Standard root allocation  	{OK_STOMATE }
+R0  =  -9999., .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
+
 # S0  ([-]    ) :  Standard sapwood allocation  	{OK_STOMATE }
 S0  =  -9999., .25, .25, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
 
+# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE}
+FRAC_GROWTHRESP =  -9999., 0.35, 0.35, 0.28, 0.28, 0.28, 0.35, 0.35, 0.35, 0.28, 0.28, 0.28, 0.28 
+
 # MAINT_RESP_SLOPE_C ([-]) :  slope of maintenance respiration coefficient (1/K), constant c of aT^2+bT+c , tabulated 	{OK_STOMATE}
-MAINT_RESP_SLOPE_C =  -9999., .20, .20, .16, .16, .16, .16, .16, .16, .16, .12, .16, .12  
+MAINT_RESP_SLOPE_C =  -9999., 0.12, 0.12, 0.16, 0.16, 0.16, 0.25, 0.25, 0.25, 0.16, 0.12, 0.16, 0.12 
 
 # MAINT_RESP_SLOPE_B ([-]) :  slope of maintenance respiration coefficient (1/K), constant b of aT^2+bT+c , tabulated 	{OK_STOMATE}
@@ -520,6 +628,9 @@
 COEFF_LCCHANGE_100 =  -9999., 0., 0., 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0., 0.104, 0. 
 
+# LAI_MAX_TO_HAPPY ([-]) :  threshold of LAI below which plant uses carbohydrate reserves 	{OK_STOMATE}
+LAI_MAX_TO_HAPPY =  -9999., .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5  
+
 # LAI_MAX ([m^2/m^2]) :  maximum LAI, PFT-specific 	{OK_STOMATE}
-LAI_MAX =  -9999., 7., 7., 5., 5., 5., 4.5, 4.5, 3.0, 2.5, 2.5, 5.,5.  
+LAI_MAX =  -9999., 7.0, 5.0, 5.0, 4.0, 5.0, 3.5, 4.0, 3.0, 2.5, 2.0, 5.0, 5.0 
 
 # PHENO_TYPE ([-]) :  type of phenology, 0 	{OK_STOMATE}
@@ -535,4 +646,7 @@
 PHENO_GDD_CRIT_A =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.03125,  0., 0., 0. 
 
+# PHENO_MOIGDD_T_CRIT ([C]) :  Average temperature threashold for C4 grass used in pheno_moigdd 	{OK_STOMATE}
+PHENO_MOIGDD_T_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 22.0, -9999., -9999. 
+
 # NGD_CRIT ([days]) :  critical ngd, tabulated. Threshold -5 degrees 	{OK_STOMATE}
 NGD_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0., -9999., -9999., -9999., -9999., -9999. 
@@ -550,4 +664,7 @@
 TAU_SAP =  -9999., 730., 730., 730., 730., 730., 730., 730., 730., -9999., -9999., -9999., -9999. 
 
+# TAU_LEAFINIT ([days]) :  time to attain the initial foliage using the carbohydrate reserve 	{OK_STOMATE}
+TAU_LEAFINIT =  -9999., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10. 
+
 # TAU_FRUIT ([days]) :  fruit lifetime 	{OK_STOMATE}
 TAU_FRUIT =  -9999., 90., 90., 90., 90., 90., 90., 90., 90., -9999., -9999., -9999., -9999. 
@@ -604,4 +721,7 @@
 GDD_SENESCENCE =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 950., 4000. 
 
+# ALWAYS_INIT ([BOOLEAN]) :  Take carbon from atmosphere if carbohydrate reserve too small 	{OK_STOMATE}
+ALWAYS_INIT =  y, y, y, y, y, y, y, y, y, y, n, y, y 
+
 # RESIDENCE_TIME ([years]) :  residence time of trees 	{OK_DGVM and NOT(LPJ_GAP_CONST_MORT)}
 RESIDENCE_TIME =  -9999., 30.0, 30.0, 40.0, 40.0, 40.0, 80.0, 80.0, 80.0, 0.0, 0.0, 0.0, 0.0  
@@ -619,6 +739,6 @@
 TREAT_EXPANSION =  n 
 
-# LPJ_GAP_CONST_MORT ([FLAG]) :  prescribe mortality if not using DGVM? 	{OK_STOMATE}
-LPJ_GAP_CONST_MORT =  y 
+# LPJ_GAP_CONST_MORT ([FLAG]) :  Constant mortality 	{OK_STOMATE AND NOT OK_DGVM}
+LPJ_GAP_CONST_MORT =  y/n depending on OK_DGVM 
 
 # HARVEST_AGRI ([FLAG]) :  Harvest model for agricultural PFTs. 	{OK_STOMATE }
@@ -626,5 +746,5 @@
 
 # FIRE_DISABLE ([FLAG]) :  no fire allowed 	{OK_STOMATE }
-FIRE_DISABLE =  n 
+FIRE_DISABLE =  y 
 
 # SPINUP_ANALYTIC (BOOLEAN    ) :  Activation of the analytic resolution of the spinup. 	{OK_STOMATE}
@@ -643,26 +763,17 @@
 LAI_MAP =  n 
 
-# SLOWPROC_LAI_OLD_INTERPOL ([FLAG]) :  Flag to use old "interpolation" of LAI 	{LAI_MAP}
-SLOWPROC_LAI_OLD_INTERPOL =  n 
-
-# LAND_USE ([FLAG]) :  Read a land_use vegetation map 	{OK_SECHIBA or OK_STOMATE}
-LAND_USE =  y 
-
-# VEGET_REINIT ([FLAG] ) :  booleen to indicate that a new LAND USE file will be used. 	{LAND_USE}
+# VEGET_REINIT ([FLAG] ) :  Reset veget_year counter (obsolet) 	{VEGET_UPDATE > 0Y}
 VEGET_REINIT =  y 
 
-# LAND_COVER_CHANGE ([FLAG] ) :  treat land use modifications 	{LAND_USE}
-LAND_COVER_CHANGE =  n 
-
-# VEGET_YEAR ([FLAG] ) :  Year of the land_use vegetation map to be read 	{LAND_USE}
+# VEGETMAP_RESET ([FLAG] ) :  Flag to change vegetation map without activating LAND USE change for carbon fluxes and reset carbon related variables to zero 	{}
+VEGETMAP_RESET =  n 
+
+# VEGET_YEAR ([FLAG] ) :  Year of the vegetation map to be read 	{}
 VEGET_YEAR =  1 
 
-# SLOWPROC_VEGET_OLD_INTERPOL ([FLAG] ) :  Flag to use old "interpolation" of vegetation map. 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-SLOWPROC_VEGET_OLD_INTERPOL =  n 
-
-# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA or HYDROL_CWRR}
+# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA}
 MAXMASS_SNOW =  3000. 
 
-# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA or HYDROL_CWRR}
+# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA}
 SNOWCRI =  1.5 
 
@@ -674,8 +785,20 @@
 
 # SNOW_TRANS ([m]   ) :  Transformation time constant for snow 	{OK_SECHIBA}
-SNOW_TRANS =  0.3 
-
-# Z0_OVER_HEIGHT ([-]   ) :  to get z0 from height  	{OK_SECHIBA }
-Z0_OVER_HEIGHT =  1/16. 
+SNOW_TRANS =  0.2 
+
+# OK_NUDGE_MC ([FLAG]) :  Activate nudging of soil moisture 	{}
+OK_NUDGE_MC =  n 
+
+# NUDGE_TAU_MC ([-]) :  Relaxation time for nudging of soil moisture expressed in fraction of the day 	{OK_NUDGE_MC}
+NUDGE_TAU_MC =  1 
+
+# OK_NUDGE_SNOW ([FLAG]) :  Activate nudging of snow variables 	{}
+OK_NUDGE_SNOW =  n 
+
+# NUDGE_TAU_SNOW ([-]) :  Relaxation time for nudging of snow variables 	{OK_NUDGE_SNOW}
+NUDGE_TAU_SNOW =  1 
+
+# NUDGE_INTERPOL_WITH_XIOS ([FLAG]) :  Activate reading and interpolation with XIOS for nudging fields 	{OK_NUDGE_MC or OK_NUDGE_SNOW}
+NUDGE_INTERPOL_WITH_XIOS =  n 
 
 # HEIGHT_DISPLACEMENT ([m]  ) :  Magic number which relates the height to the displacement height. 	{OK_SECHIBA }
@@ -689,5 +812,5 @@
 
 # TCST_SNOWA ([days]) :  Time constant of the albedo decay of snow 	{OK_SECHIBA }
-TCST_SNOWA =  5.0  
+TCST_SNOWA =  10.0  
 
 # SNOWCRI_ALB ([cm]  ) :  Critical value for computation of snow albedo 	{OK_SECHIBA}
@@ -724,6 +847,6 @@
 ALB_BARE_MODEL =  n 
 
-# Z0CDRAG_AVE ([FLAG]) :  Average method for z0 	{OK_SECHIBA}
-Z0CDRAG_AVE =  y 
+# ALB_BG_MODIS ([FLAG]) :  Read bare soil albedo from file with background MODIS data 	{OK_SECHIBA}
+ALB_BG_MODIS =  y 
 
 # IMPOSE_AZE ([FLAG]) :  Should the surface parameters be prescribed 	{OK_SECHIBA}
@@ -745,4 +868,103 @@
 CONDVEG_EMIS =  1.0 
 
+# ROUGH_DYN ([FLAG]) :  Account for a dynamic roughness height 	{OK_SECHIBA}
+ROUGH_DYN =  y 
+
+# C1 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C1 =  0.32 
+
+# C2 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C2 =  0.264 
+
+# C3 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C3 =  15.1 
+
+# Cdrag_foliage ([-] ) :  Drag coefficient of the foliage 	{ROUGH_DYN}
+Cdrag_foliage =  0.2 
+
+# Ct ([-] ) :  Heat transfer coefficient of the leaf 	{ROUGH_DYN}
+Ct =  0.01 
+
+# Prandtl ([-] ) :  Prandtl number used in the calculation of Ct* 	{ROUGH_DYN}
+Prandtl =  0.71 
+
+# xansmax  ([-] ) :  maximum snow albedo 	{OK_SECHIBA}
+xansmax  =  0.85 
+
+# xansmin  ([-] ) :  minimum snow albedo 	{OK_SECHIBA}
+xansmin  =  0.50 
+
+# xans_todry  ([S-1] ) :  albedo decay rate for the dry snow  	{OK_SECHIBA}
+xans_todry  =  0.008 
+
+# xans_t  ([S-1] ) :  albedo decay rate for the wet snow  	{OK_SECHIBA}
+xans_t  =  0.24 
+
+# xrhosmax  ([-] ) :  maximum snow density  	{OK_SECHIBA}
+xrhosmax  =  750 
+
+# xwsnowholdmax1 ([-] ) :  snow holding capacity 1 	{OK_SECHIBA}
+xwsnowholdmax1 =  0.03 
+
+# xwsnowholdmax2 ([-] ) :  snow holding capacity 2 	{OK_SECHIBA}
+xwsnowholdmax2 =  0.10 
+
+# xsnowrhohold  ([kg/m3] ) :  snow density  	{OK_SECHIBA}
+xsnowrhohold  =  200.0 
+
+# ZSNOWTHRMCOND1 ([W/m/K] ) :  Thermal conductivity Coef 1 	{OK_SECHIBA}
+ZSNOWTHRMCOND1 =  0.02  
+
+# ZSNOWTHRMCOND2 ([W m5/(kg2 K)] ) :  Thermal conductivity Coef 2 	{OK_SECHIBA}
+ZSNOWTHRMCOND2 =  2.5E-6 
+
+# ZSNOWTHRMCOND_AVAP ([W/m/K] ) :  Thermal conductivity Coef 1 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_AVAP =  -0.06023 
+
+# ZSNOWTHRMCOND_BVAP ([W/m] ) :  Thermal conductivity Coef 2 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_BVAP =  -2.5425 
+
+# ZSNOWTHRMCOND_CVAP ([K] ) :  Thermal conductivity Coef 3 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_CVAP =  -289.99 
+
+# ZSNOWCMPCT_RHOD ([kg/m3]) :  Snow compaction coefficent 	{OK_SECHIBA}
+ZSNOWCMPCT_RHOD =  150.0 
+
+# ZSNOWCMPCT_ACM ([1/s]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_ACM =  2.8e-6 
+
+# ZSNOWCMPCT_BCM ([1/K]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_BCM =  0.04 
+
+# ZSNOWCMPCT_CCM ([m3/kg] ) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_CCM =  460. 
+
+# ZSNOWCMPCT_V0 ([Pa/s]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_V0 =  3.7e7 
+
+# ZSNOWCMPCT_VT ([1/K]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VT =  0.081 
+
+# ZSNOWCMPCT_VR ([m3/kg]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VR =  0.018 
+
+# CB ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CB =  5.0 
+
+# CC ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CC =  5.0 
+
+# CD ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CD =  5.0 
+
+# RAYT_CSTE ([W.m^{-2}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+RAYT_CSTE =  125 
+
+# DEFC_PLUS ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_PLUS =  23.E-3 
+
+# DEFC_MULT ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_MULT =  1.5 
+
 # NLAI ([-]  ) :  Number of LAI levels 	{OK_SECHIBA}
 NLAI =  20 
@@ -755,12 +977,21 @@
 
 # DOWNREGULATION_CO2 ([FLAG]   ) :  Activation of CO2 downregulation 	{OK_SECHIBA}
-DOWNREGULATION_CO2 =  n  
+DOWNREGULATION_CO2 =  y 
 
 # DOWNREGULATION_CO2_BASELEVEL ([ppm]   ) :  CO2 base level 	{OK_SECHIBA }
-DOWNREGULATION_CO2_BASELEVEL =  280. 
+DOWNREGULATION_CO2_BASELEVEL =  380. 
+
+# GB_REF ([s m-1]   ) :  Leaf bulk boundary layer resistance 	{}
+GB_REF =  1./25. 
 
 # CLAYFRACTION_DEFAULT ([-]   ) :  default fraction of clay 	{OK_SECHIBA }
 CLAYFRACTION_DEFAULT =  0.2  
 
+# SANDFRACTION_DEFAULT ([-]   ) :  default fraction of sand 	{OK_SECHIBA }
+SANDFRACTION_DEFAULT =  0.4  
+
+# SILTFRACTION_DEFAULT ([-]   ) :  default fraction of silt 	{OK_SECHIBA }
+SILTFRACTION_DEFAULT =  0.4  
+
 # MIN_VEGFRAC  ([-]  ) :  Minimal fraction of mesh a vegetation type can occupy  	{OK_SECHIBA }
 MIN_VEGFRAC  =  0.001  
@@ -769,8 +1000,8 @@
 STEMPDIAG_BID  =  280. 
 
-# LAI_LEVEL_DEPTH ([-]  ) :   	{OK_CO2}
+# LAI_LEVEL_DEPTH ([-]  ) :   	{}
 LAI_LEVEL_DEPTH =  0.15 
 
-# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{OK_CO2}
+# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{}
 Oi =  210000. 
 
@@ -796,7 +1027,4 @@
 FIREFRAC_COEFF  =  0.45, 0.8, 0.6, 0.13 
 
-# AVAILABILITY_FACT  ([-]   ) :   	{OK_STOMATE }
-AVAILABILITY_FACT  =  0.1 
-
 # REF_GREFF ([1/year]  ) :  Asymptotic maximum mortality rate 	{OK_STOMATE }
 REF_GREFF =  0.035 
@@ -805,7 +1033,4 @@
 OK_MINRES =  y 
 
-# TAU_LEAFINIT ([days]  ) :  time to attain the initial foliage using the carbohydrate reserve  	{OK_STOMATE }
-TAU_LEAFINIT =  10. 
-
 # RESERVE_TIME_TREE  ([days]    ) :  maximum time during which reserve is used (trees)  	{OK_STOMATE }
 RESERVE_TIME_TREE  =  30. 
@@ -814,7 +1039,4 @@
 RESERVE_TIME_GRASS  =  20.  
 
-# R0 ([-]  ) :  Standard root allocation  	{OK_STOMATE }
-R0 =  0.3  
-
 # F_FRUIT ([-]    ) :  Standard fruit allocation 	{OK_STOMATE }
 F_FRUIT =  0.1  
@@ -832,7 +1054,4 @@
 Z_NITROGEN =  0.2  
 
-# LAI_MAX_TO_HAPPY ([-]  ) :   	{OK_STOMATE }
-LAI_MAX_TO_HAPPY =  0.5  
-
 # NLIM_TREF  ([C]  ) :   	{OK_STOMATE }
 NLIM_TREF  =  25.  
@@ -877,7 +1096,4 @@
 MASS_RATIO_HEART_SAP =  3. 
 
-# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE }
-FRAC_GROWTHRESP =  0.28 
-
 # TAU_HUM_MONTH ([days]  ) :  time scales for phenology and other processes 	{OK_STOMATE }
 TAU_HUM_MONTH =  20.  
@@ -1012,4 +1228,7 @@
 MOIST_COEFF =  1.1, 2.4, 0.29 
 
+# MOISTCONT_MIN ([-]) :  minimum soil wetness to limit the heterotrophic respiration 	{OK_STOMATE }
+MOISTCONT_MIN =  0.25 
+
 # FRAC_TURNOVER_DAILY  ([-]) :   	{OK_STOMATE }
 FRAC_TURNOVER_DAILY  =  0.55 
@@ -1018,7 +1237,4 @@
 TAX_MAX =  0.8 
 
-# ALWAYS_INIT ([-]   ) :  take carbon from atmosphere if carbohydrate reserve too small?  	{OK_STOMATE }
-ALWAYS_INIT =  n  
-
 # MIN_GROWTHINIT_TIME  ([days]  ) :  minimum time since last beginning of a growing season 	{OK_STOMATE }
 MIN_GROWTHINIT_TIME  =  300.  
@@ -1073,8 +1289,8 @@
 
 # CARBON_TAU_ISLOW ([days]) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_ISLOW =  5.48 
+CARBON_TAU_ISLOW =  7.0 
 
 # CARBON_TAU_IPASSIVE ([days] ) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_IPASSIVE =  241. 
+CARBON_TAU_IPASSIVE =  300. 
 
 # FLUX_TOT_COEFF ([days] ) :  	{OK_STOMATE }
@@ -1084,7 +1300,4 @@
 NEW_TURNOVER_TIME_REF =  20.  
 
-# DT_TURNOVER_TIME  ([days]  ) :   	{OK_STOMATE }
-DT_TURNOVER_TIME  =  10. 
-
 # LEAF_AGE_CRIT_TREF ([days]  ) :   	{OK_STOMATE }
 LEAF_AGE_CRIT_TREF =  20.  
@@ -1174,6 +1387,9 @@
 EVERYWHERE_INIT =  0.05  
 
-# THERMOSOIL_NBLEV ((-)) :  Number of soil level 	{}
-THERMOSOIL_NBLEV =  7 
+# PRINTLEV ([0, 1, 2, 3, 4]) :  Print level for text output 	{}
+PRINTLEV =  2 
+
+# PRINTLEV_modname ([0, 1, 2, 3, 4]) :  Specific print level of text output for the module "modname". Default as PRINTLEV. 	{}
+PRINTLEV_modname =  PRINTLEV 
 
 # DRY_SOIL_HEAT_CAPACITY ([J.m^{-3}.K^{-1}] ) :  Dry soil Heat capacity of soils 	{OK_SECHIBA }
@@ -1195,40 +1411,49 @@
 SNOW_DENSITY =  330.0 
 
-# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
+# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{}
 NOBIO_WATER_CAPAC_VOLUMETRI =  150. 
+
+# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
+SECHIBA_QSINT  =  0.02 
+
+# OK_FREEZE ([FLAG]) :  Activate the complet soil freezing scheme 	{OK_SECHIBA }
+OK_FREEZE =  TRUE 
+
+# READ_REFTEMP ([FLAG]) :  Initialize soil temperature using climatological temperature 	{}
+READ_REFTEMP =  True/False depening on OK_FREEZE 
+
+# OK_FREEZE_THERMIX ([FLAG]) :  Activate thermal part of the soil freezing scheme 	{}
+OK_FREEZE_THERMIX =  True if OK_FREEZE else false 
+
+# OK_ECORR ([FLAG]) :  Energy correction for freezing 	{OK_FREEZE_THERMIX}
+OK_ECORR =  True if OK_FREEZE else false 
+
+# OK_FREEZE_THAW_LATENT_HEAT ([FLAG]) :  Activate latent heat part of the soil freezing scheme 	{}
+OK_FREEZE_THAW_LATENT_HEAT =  FALSE  
+
+# POROS ([-] ) :  Soil porosity  	{OK_SECHIBA}
+POROS =  0.41 
+
+# fr_dT ([K] ) :  Freezing window     	{OK_SECHIBA}
+fr_dT =  2.0 
+
+# OK_FREEZE_CWRR ([FLAG]) :  CWRR freezing scheme by I. Gouttevin 	{}
+OK_FREEZE_CWRR =  True if OK_FREEZE else false 
+
+# OK_THERMODYNAMICAL_FREEZING ([FLAG]) :  Calculate frozen fraction thermodynamically  	{OK_FREEZE_CWRR}
+OK_THERMODYNAMICAL_FREEZING =  True 
+
+# CHECK_CWRR ([FLAG]) :  Calculate diagnostics to check CWRR water balance 	{}
+CHECK_CWRR =  n 
+
+# VEGET_UPDATE ([years]) :  Update vegetation frequency: 0Y or 1Y 	{}
+VEGET_UPDATE =  0Y 
+
+# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
+SECHIBA_ZCANOP =  0.5 
 
 # SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
 SECHIBA_QSINT  =  0.1 
 
-# CHOISNEL_DIFF_MIN ([kg/m^2/dt]) :  Diffusion constant for the slow regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MIN =  0.001 
-
-# CHOISNEL_DIFF_MAX ([kg/m^2/dt]) :  Diffusion constant for the fast regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MAX =  0.1 
-
-# CHOISNEL_DIFF_EXP ([-]) :  The exponential in the diffusion law 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_EXP =  1.5 
-
-# CHOISNEL_RSOL_CSTE ([s/m^2]) :  Constant in the computation of resistance for bare  soil evaporation  	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_RSOL_CSTE =  33.E3 
-
-# HCRIT_LITTER ([m]) :  Scaling depth for litter humidity 	{OK_SECHIBA and .NOT.(HYDROL_CWRR) }
-HCRIT_LITTER =  0.08  
-
-# SECHIBA_DAY ([days]) :  Time within the day simulated 	{OK_SECHIBA}
-SECHIBA_DAY =  0.0 
-
-# VEGET_UPDATE ([years]) :  Update vegetation frequency 	{LAND_USE}
-VEGET_UPDATE =  0Y 
-
-# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
-SECHIBA_ZCANOP =  0.5 
-
-# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
-SECHIBA_QSINT  =  0.1 
-
-# DT_SLOW ([seconds]) :  Time step of STOMATE and other slow processes 	{OK_STOMATE}
-DT_SLOW =  86400. 
-
 # SECHIBA_VEGMAX ([-]) :  Maximum vegetation distribution within the mesh (0-dim mode) 	{IMPOSE_VEG}
 SECHIBA_VEGMAX =  0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0 
@@ -1246,4 +1471,7 @@
 CLAY_FRACTION =  0.2 
 
+# SAND_FRACTION ([-] ) :  Fraction of the clay fraction (0-dim mode) 	{IMPOSE_VEG and IMPOSE_SOIL}
+SAND_FRACTION =  0.4 
+
 # REINF_SLOPE ([-]) :  Slope coef for reinfiltration  	{IMPOSE_VEG}
 REINF_SLOPE =  0.1 
@@ -1255,7 +1483,4 @@
 GET_SLOPE =  n 
 
-# LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(LAI_MAP)}
-LAI_FILE =  lai2D.nc 
-
 # LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAI_MAP}
 LAI_FILE =  lai2D.nc 
@@ -1264,18 +1489,6 @@
 RENORM_LAI =  n 
 
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAND_USE}
+# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{}
 VEGETATION_FILE =  PFTmap.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
 
 # SOILCLASS_FILE ([FILE]) :  Name of file from which soil types are read 	{NOT(IMPOSE_VEG)}
@@ -1288,107 +1501,101 @@
 TOPOGRAPHY_FILE =  cartepente2d_15min.nc 
 
+# WOODHARVEST_FILE ([FILE]) :  Name of file from which the wood harvest will be read 	{DO_WOOD_HARVEST}
+WOODHARVEST_FILE =  woodharvest.nc 
+
 # SOILALB_FILE ([FILE]) :  Name of file from which the bare soil albedo 	{NOT(IMPOSE_AZE)}
 SOILALB_FILE =  soils_param.nc 
 
+# ALB_BG_FILE ([FILE]) :  Name of file from which the background albedo is read  	{ALB_BG_MODIS}
+ALB_BG_FILE =  alb_bg.nc 
+
 # CDRAG_FROM_GCM ([FLAG]) :  Keep cdrag coefficient from gcm. 	{OK_SECHIBA}
 CDRAG_FROM_GCM =  y 
 
-# DIFFUCO_LEAFCI ([ppm]) :  Initial leaf CO2 level if not found in restart 	{OK_SECHIBA}
-DIFFUCO_LEAFCI =  233. 
-
-# ALLOW_WEATHERGEN ([FLAG]) :  Allow weather generator to create data 	{}
-ALLOW_WEATHERGEN =  n 
-
-# FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
-FORCING_FILE =  forcing_file.nc 
-
-# HYDROL_OK_HDIFF ([FLAG]) :  do horizontal diffusion? 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)  }
-HYDROL_OK_HDIFF =  n 
-
-# HYDROL_SNOW ([kg/m^2]) :  Initial snow mass if not found in restart 	{OK_SECHIBA}
-HYDROL_SNOW =  0.0 
-
-# HYDROL_SNOWAGE ([days]) :  Initial snow age if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOWAGE =  0.0 
-
-# HYDROL_SNOW_NOBIO ([m]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO =  0.0 
-
-# HYDROL_SNOW_NOBIO_AGE ([days]) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO_AGE =  0.0 
-
-# HYDROL_HUMR ([-]) :  Initial soil moisture stress if not found in restart 	{OK_SECHIBA }
-HYDROL_HUMR =  1.0 
-
-# HYDROL_BQSB ([kg/m^2]) :  Initial restart deep soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_BQSB =  999999.  
-
-# HYDROL_GQSB ([kg/m^2]) :  Initial upper soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_GQSB =  0.0 
-
-# HYDROL_DSG ([m]) :  Initial upper reservoir depth if not found in restart 	{OK_SECHIBA }
-HYDROL_DSG =  0.0 
-
-# HYDROL_QSV ([kg/m^2]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA }
-HYDROL_QSV =  0.0 
-
-# HYDROL_DSP ([m]) :  Initial dry soil above upper reservoir if not found in restart 	{OK_SECHIBA }
-HYDROL_DSP =  999999. 
-
-# HYDROL_TAU_HDIFF ([seconds]) :  time scale (s) for horizontal diffusion of water 	{HYDROL_OK_HDIFF}
-HYDROL_TAU_HDIFF =  86400. 
-
-# CHECK_CWRR ([FLAG]) :  Should we check detailed CWRR water balance ? 	{HYDROL_CWRR}
-CHECK_CWRR =  n 
-
-# DO_PONDS ([FLAG]) :  Should we include ponds  	{HYDROL_CWRR}
+# N_FERTIL_FILE (- ) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# N_FERTIL_FILE (-) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# ENERBIL_TSURF (Kelvin [K]) :  Initial temperature if not found in restart 	{OK_SECHIBA}
+ENERBIL_TSURF =  280. 
+
+# ENERBIL_EVAPOT () :  Initial Soil Potential Evaporation 	{OK_SECHIBA       }
+ENERBIL_EVAPOT =  0.0 
+
+# BEDROCK_FLAG ([FLAG]) :  Flag to consider bedrock at deeper layers. 	{}
+BEDROCK_FLAG =  0 
+
+# THERMOSOIL_TPRO (Kelvin [K]) :  Initial soil temperature profile if not found in restart 	{OK_SECHIBA}
+THERMOSOIL_TPRO =  280. 
+
+# SOIL_REFTEMP_FILE ([FILE]) :  File with climatological soil temperature 	{READ_REFTEMP}
+SOIL_REFTEMP_FILE =  reftemp.nc 
+
+# DO_PONDS ([FLAG]) :  Should we include ponds  	{}
 DO_PONDS =  n 
 
-# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{HYDROL_CWRR}
+# FROZ_FRAC_CORR  ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+FROZ_FRAC_CORR  =  1.0 
+
+# MAX_FROZ_HYDRO ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+MAX_FROZ_HYDRO =  1.0 
+
+# SMTOT_CORR ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+SMTOT_CORR =  2.0 
+
+# DO_RSOIL ([FLAG]) :  Should we reduce soil evaporation with a soil resistance 	{}
+DO_RSOIL =  n 
+
+# OK_DYNROOT ([FLAG]) :  Calculate dynamic root profile to optimize soil moisture usage   	{}
+OK_DYNROOT =  n 
+
+# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{}
 CWRR_N_VANGENUCHTEN =  1.89, 1.56, 1.31 
 
-# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{HYDROL_CWRR}
+# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{}
 CWRR_A_VANGENUCHTEN =  0.0075, 0.0036, 0.0019 
 
-# VWC_RESIDUAL ([mm]  ) :  Residual soil water content 	{HYDROL_CWRR}
+# VWC_RESIDUAL ([m3/m3]  ) :  Residual soil water content 	{}
 VWC_RESIDUAL =  0.065, 0.078, 0.095 
 
-# VWC_SAT ([-]  ) :  Saturated soil water content 	{HYDROL_CWRR}
+# VWC_SAT ([m3/m3]  ) :  Saturated soil water content 	{}
 VWC_SAT =  0.41, 0.43, 0.41 
 
-# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{HYDROL_CWRR }
+# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{}
 CWRR_KS  =  1060.8, 249.6, 62.4 
 
-# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{HYDROL_CWRR}
+# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{}
 WETNESS_TRANSPIR_MAX =  0.5, 0.5, 0.5 
 
-# DRAINAGE_FACTOR_F ([-]   ) :  Max value of the permeability coeff at the bottom of the soil  	{HYDROL_CWRR}
-DRAINAGE_FACTOR_F =  1.0, 1.0, 1.0  
-
-# VWC_FC  ([-]   ) :  Volumetric water content field capacity 	{HYDROL_CWRR}
+# VWC_FC  ([m3/m3]   ) :  Volumetric water content field capacity 	{}
 VWC_FC  =  0.32, 0.32, 0.32 
 
-# VWC_WP ([-]   ) :  Volumetric water content Wilting pt 	{HYDROL_CWRR}
+# VWC_WP ([m3/m3]   ) :  Volumetric water content Wilting pt 	{}
 VWC_WP =  0.10, 0.10, 0.10  
 
-# VWC_MIN_FOR_WET_ALB ([-]  ) :  Vol. wat. cont. above which albedo is cst 	{HYDROL_CWRR}
+# VWC_MIN_FOR_WET_ALB ([m3/m3]  ) :  Vol. wat. cont. above which albedo is cst 	{}
 VWC_MIN_FOR_WET_ALB =  0.25, 0.25, 0.25 
 
-# VWC_MAX_FOR_DRY_ALB ([-]   ) :  Vol. wat. cont. below which albedo is cst 	{HYDROL_CWRR}
+# VWC_MAX_FOR_DRY_ALB ([m3/m3]   ) :  Vol. wat. cont. below which albedo is cst 	{}
 VWC_MAX_FOR_DRY_ALB =  0.1, 0.1, 0.1 
 
-# HYDROL_MOISTURE_CONTENT () :  Soil moisture on each soil tile and levels 	{HYDROL_CWRR       }
+# HYDROL_MOISTURE_CONTENT ([m3/m3]) :  Soil moisture on each soil tile and levels 	{}
 HYDROL_MOISTURE_CONTENT =  0.3 
 
-# US_INIT () :  US_NVM_NSTM_NSLM 	{HYDROL_CWRR       }
+# US_INIT ([-]) :  US_NVM_NSTM_NSLM 	{}
 US_INIT =  0.0 
 
-# FREE_DRAIN_COEF () :  Coefficient for free drainage at bottom 	{HYDROL_CWRR       }
-FREE_DRAIN_COEF =  1.0, 1.0, 1.0 
-
-# WATER_TO_INFILT () :  Water to be infiltrated on top of the soil 	{HYDROL_CWRR    }
+# ZWT_FORCE ([m]) :  Prescribed water depth, dimension nstm 	{}
+ZWT_FORCE =  -9999. -9999. -9999. 
+
+# FREE_DRAIN_COEF ([-]) :  Coefficient for free drainage at bottom, dimension nstm 	{}
+FREE_DRAIN_COEF =  1.0 1.0 1.0 
+
+# WATER_TO_INFILT ([mm]) :  Water to be infiltrated on top of the soil 	{}
 WATER_TO_INFILT =  0.0 
 
-# EVAPNU_SOIL () :  Bare soil evap on each soil if not found in restart 	{HYDROL_CWRR  }
+# EVAPNU_SOIL ([mm]) :  Bare soil evap on each soil if not found in restart 	{}
 EVAPNU_SOIL =  0.0 
 
@@ -1396,39 +1603,39 @@
 HYDROL_SNOW =  0.0 
 
-# HYDROL_SNOWAGE () :  Initial snow age if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOWAGE (***) :  Initial snow age if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOWAGE =  0.0 
 
-# HYDROL_SNOW_NOBIO () :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO ([mm]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO =  0.0 
 
-# HYDROL_SNOW_NOBIO_AGE () :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO_AGE (***) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO_AGE =  0.0 
 
-# HYDROL_QSV () :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
+# HYDROL_QSV ([mm]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
 HYDROL_QSV =  0.0 
 
-# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_N0  =  0.95 
-
-# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_POWER =  0.34 
-
-# CWRR_AKS_A0  ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_A0  =  0.00012 
-
-# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_POWER =  0.53 
-
-# KFACT_DECAY_RATE ([-]) :  Factor for Ks decay with depth 	{HYDROL_CWRR }
+# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_N0  =  0.0 
+
+# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_POWER =  0.0 
+
+# CWRR_AKS_A0  ([1/mm]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_A0  =  0.0 
+
+# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_POWER =  0.0 
+
+# KFACT_DECAY_RATE ([1/m]) :  Factor for Ks decay with depth 	{}
 KFACT_DECAY_RATE =  2.0 
 
-# KFACT_STARTING_DEPTH ([-]) :  Depth for compacted value of Ks  	{HYDROL_CWRR }
+# KFACT_STARTING_DEPTH ([m]) :  Depth for compacted value of Ks  	{}
 KFACT_STARTING_DEPTH =  0.3 
 
-# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{HYDROL_CWRR }
+# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{}
 KFACT_MAX =  10.0 
 
-# ROUTING_TIMESTEP ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
-ROUTING_TIMESTEP =  86400. 
+# DT_ROUTING  ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
+DT_ROUTING  =  86400. 
 
 # ROUTING_RIVERS ([-]) :  Number of rivers  	{RIVER_ROUTING}
@@ -1445,11 +1652,11 @@
 
 # SLOW_TCST ([days]) :  Time constant for the slow reservoir  	{RIVER_ROUTING }
-SLOW_TCST =  n 
+SLOW_TCST =  25.0  
 
 # FAST_TCST ([days]) :  Time constant for the fast reservoir  	{RIVER_ROUTING }
-FAST_TCST =  fast_tcst_cwrr or fast_tcst_chois depending on flag HYDROL_CWRR 
+FAST_TCST =  3.0  
 
 # STREAM_TCST ([days]) :  Time constant for the stream reservoir  	{RIVER_ROUTING}
-STREAM_TCST =  stream_tcst_cwrr or stream_tcst_chois depending on flag HYDROL_CWRR 
+STREAM_TCST =  0.24 
 
 # FLOOD_TCST ([days]) :  Time constant for the flood reservoir  	{RIVER_ROUTING}
@@ -1471,9 +1678,12 @@
 POND_CRI =  2000. 
 
+# MAX_LAKE_RESERVOIR ([kg/m2(routing area)] ) :  Maximum limit of water in lake_reservoir 	{RIVER_ROUTING}
+MAX_LAKE_RESERVOIR =  7000 
+
 # RIVER_DESC ([FLAG]) :  Writes out a description of the rivers 	{RIVER_ROUTING}
 RIVER_DESC =  n 
 
 # RIVER_DESC_FILE ([FILE]) :  Filename in which we write the description of the rivers. If suffix is ".nc" a netCDF file is created 	{RIVER_DESC}
-RIVER_DESC_FILE =  river_desc.txt 
+RIVER_DESC_FILE =  river_desc.nc 
 
 # ROUTING_FILE ([FILE]) :  Name of file which contains the routing information 	{RIVER_ROUTING}
@@ -1504,11 +1714,8 @@
 FORCESOIL_NB_YEAR =  1 
 
-# BAVARD ([-]) :  level of online diagnostics in STOMATE (0-4) 	{OK_STOMATE}
-BAVARD =  1 
-
-# REFTEMP_FILE ([FILE]) :  Name of file from which the reference temperature is read 	{OK_STOMATE}
-REFTEMP_FILE =  reftemp.nc 
-
 # XIOS_ORCHIDEE_OK ([FLAG]) :  Use XIOS for writing diagnostics file 	{}
-XIOS_ORCHIDEE_OK =  n 
-
+XIOS_ORCHIDEE_OK =  y  
+
+# XIOS_INTERPOLATION ([FLAG]) :  Actiave reading and intrepolation using XIOS 	{XIOS_ORCHIDEE_OK}
+XIOS_INTERPOLATION =  n 
+
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/FORCESOIL/PARAM/orchidee.default
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/FORCESOIL/PARAM/orchidee.default	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/FORCESOIL/PARAM/orchidee.default	(revision 5633)
@@ -6,5 +6,5 @@
 #
 #*******************************************************************************************
-#                    Namelist for ORCHIDEE (trunk revision 2135) 
+#                    Namelist for ORCHIDEE 
 #*******************************************************************************************
 #
@@ -18,12 +18,15 @@
 #*******************************************************************************************
 
-# DEBUG_INFO ([FLAG] ) :  Flag for debug information 	{[-]}
-DEBUG_INFO =  n 
+# LWDOWN_CONS ([FLAG]) :  Conserve longwave downwelling radiation in the forcing 	{}
+LWDOWN_CONS =  n 
+
+# SWDOWN_CONS ([FLAG]) :  Conserve shortwave downwelling radiation in the forcing 	{}
+SWDOWN_CONS =  LWDOWN_CONS 
 
 # FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
 FORCING_FILE =  forcing_file.nc 
 
-# SPLIT_DT ([-]) :  splits the timestep imposed by the forcing 	{NOT(WEATHERGEN)}
-SPLIT_DT =  12 
+# DT_SECHIBA ([seconds]) :  Time-step of the SECHIBA component 	{NOT(WEATHERGEN)}
+DT_SECHIBA =  1800. 
 
 # RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions 	{[-]}
@@ -40,5 +43,5 @@
 
 # TIME_LENGTH ([seconds, days, months, years]) :  Length of the integration in time. 	{[-]}
-TIME_LENGTH =  DEF 
+TIME_LENGTH =  Full length of the forcing file  
 
 # RELAXATION ([FLAG]) :  method of forcing 	{[-]}
@@ -48,17 +51,8 @@
 RELAX_A =  1.0 
 
-# NO_INTER  ([FLAG]) :  No interpolation IF split is larger than 1 	{[-]}
-NO_INTER  =  y 
-
-# INTER_LIN ([FLAG]) :  Interpolation IF split is larger than 1 	{[-]}
-INTER_LIN =  n 
-
 # SPRED_PREC ([-]) :  Spread the precipitation. 	{[-]}
-SPRED_PREC =  1 
-
-# NETRAD_CONS ([FLAG]) :  Conserve net radiation in the forcing 	{INTER_LIN}
-NETRAD_CONS =  y 
-
-# ATM_CO2 ([ppm]) :  Value for atm CO2 	{[-]}
+SPRED_PREC =  Half of the forcing time step or uniform, depending on dt_force and dt_sechiba 
+
+# ATM_CO2 ([ppm]) :  Value to precribe atmosoheric CO2 	{[FORCE_CO2_VEG=y or Offline mode]}
 ATM_CO2 =  350. 
 
@@ -87,4 +81,13 @@
 ZONAL_RES =  2. 
 
+# HEIGHT_LEV1 ([m]) :  Height at which T and Q are given 	{offline mode}
+HEIGHT_LEV1 =  2.0 
+
+# HEIGHT_LEVW ([m]) :  Height at which the wind is given 	{offline mode}
+HEIGHT_LEVW =  10.0 
+
+# NBUFF (-) :  Number of time steps of data to buffer between each reading of the forcing file 	{OFF_LINE}
+NBUFF =  1 
+
 # IPPREC ([-] ) :  Use prescribed values 	{ALLOW_WEATHERGEN}
 IPPREC =  0 
@@ -102,6 +105,6 @@
 DUMP_WEATHER_GATHERED =  y 
 
-# HEIGHT_LEV1 ([m]) :   	{DUMP_WEATHER}
-HEIGHT_LEV1 =  10. 
+# HEIGHT_LEV1_DUMP ([m]) :   	{DUMP_WEATHER}
+HEIGHT_LEV1_DUMP =  10. 
 
 #*******************************************************************************************
@@ -109,30 +112,9 @@
 #*******************************************************************************************
 
-# LONGPRINT ([FLAG]) :  ORCHIDEE will print more messages 	{OK_SECHIBA}
-LONGPRINT =  n 
-
-# CHECKTIME ([FLAG]) :  ORCHIDEE will print messages on time 	{OK_SECHIBA}
-CHECKTIME =  n 
-
 # SOILTYPE_CLASSIF ([-]) :  Type of classification used for the map of soil types  	{!IMPOSE_VEG}
 SOILTYPE_CLASSIF =  zobler 
 
-# ORCHIDEE_WATCHOUT ([FLAG]) :  ORCHIDEE will write out its forcing to a file 	{}
-ORCHIDEE_WATCHOUT =  n 
-
-# DT_WATCHOUT ([seconds]) :  ORCHIDEE will write out with this frequency 	{ORCHIDEE_WATCHOUT}
-DT_WATCHOUT =  dt 
-
-# WATCHOUT_FILE ([FILE]) :  Filenane for the ORCHIDEE forcing file 	{ORCHIDEE_WATCHOUT}
-WATCHOUT_FILE =  orchidee_watchout.nc 
-
 # RIVER_ROUTING ([FLAG]) :  Decides if we route the water or not 	{OK_SECHIBA}
-RIVER_ROUTING =  n 
-
-# HYDROL_CWRR ([FLAG]) :  Allows to switch on the multilayer hydrology of CWRR 	{OK_SECHIBA}
-HYDROL_CWRR =  n 
-
-# HYDROL_SOIL_DEPTH ([m]) :  Total depth of soil reservoir 	{OK_SECHIBA }
-HYDROL_SOIL_DEPTH =  4./ 2. (if HYDROL_CWRR) 
+RIVER_ROUTING =  y 
 
 # DO_IRRIGATION ([FLAG]) :  Should we compute an irrigation flux  	{RIVER_ROUTING }
@@ -142,23 +124,20 @@
 DO_FLOODPLAINS =  n 
 
-# CHECK_WATERBAL ([FLAG]  ) :  Should we check the global water balance  	{OK_SECHIBA}
-CHECK_WATERBAL =  n 
-
-# STOMATE_OK_CO2 ([FLAG]) :  Activate CO2? 	{OK_SECHIBA }
-STOMATE_OK_CO2 =  n 
-
-# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA and OK_CO2}
-STOMATE_OK_STOMATE =  n 
+# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA}
+STOMATE_OK_STOMATE =  y 
+
+# DO_WOOD_HARVEST ([FLAG]) :  Activate Wood Harvest ? 	{OK_STOMATE}
+DO_WOOD_HARVEST =  y 
 
 # STOMATE_OK_DGVM ([FLAG]) :  Activate DGVM? 	{OK_STOMATE}
 STOMATE_OK_DGVM =  n 
 
-# DIFFUCO_OK_INCA ([FLAG]) :  Activate DIFFUCO_INCA? 	{OK_SECHIBA}
-DIFFUCO_OK_INCA =  n 
-
-# LEAFAGE_OK_INCA ([FLAG]) :  Activate LEAFAGE? 	{DIFFUCO_OK_INCA}
-LEAFAGE_OK_INCA =  n 
-
-# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{DIFFUCO_OK_INCA }
+# CHEMISTRY_BVOC ([FLAG]) :  Activate calculations for BVOC 	{OK_SECHIBA}
+CHEMISTRY_BVOC =  n 
+
+# CHEMISTRY_LEAFAGE ([FLAG]) :  Activate LEAFAGE? 	{CHEMISTRY_BVOC}
+CHEMISTRY_LEAFAGE =  n 
+
+# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{CHEMISTRY_BVOC }
 CANOPY_EXTINCTION  =  n 
 
@@ -166,15 +145,12 @@
 CANOPY_MULTILAYER =  n 
 
-# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{DIFFUCO_OK_INCA }
+# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{CHEMISTRY_BVOC }
 NOx_RAIN_PULSE =  n 
 
-# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{DIFFUCO_OK_INCA }
+# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{CHEMISTRY_BVOC }
 NOx_BBG_FERTIL =  n 
 
-# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{DIFFUCO_OK_INCA }
+# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{CHEMISTRY_BVOC }
 NOx_FERTILIZERS_USE =  n 
-
-# STOMATE_WATCHOUT ([FLAG]) :  STOMATE does minimum service 	{OK_SECHIBA }
-STOMATE_WATCHOUT =  n 
 
 # NVM ([-]) :  number of PFTs   	{OK_SECHIBA or OK_STOMATE}
@@ -184,4 +160,67 @@
 IMPOSE_PARAM =  y 
 
+# DEPTH_MAX_T (m) :  Maximum depth of the soil thermodynamics 	{}
+DEPTH_MAX_T =  90.0 
+
+# DEPTH_MAX_H (m) :  Maximum depth of soil moisture 	{}
+DEPTH_MAX_H =  2.0 
+
+# DEPTH_TOPTHICK (m) :  Thickness of upper most Layer  	{}
+DEPTH_TOPTHICK =  9.77517107e-04 
+
+# DEPTH_CSTTHICK (m) :  Depth at which constant layer thickness start 	{}
+DEPTH_CSTTHICK =  DEPTH_MAX_H  
+
+# REFINEBOTTOM (-) :  Depth at which the hydrology layers will be refined towards the bottom. 	{}
+REFINEBOTTOM =  .FALSE. 
+
+# DEPTH_GEOM (m) :  Depth at which we resume geometrical increases for temperature 	{}
+DEPTH_GEOM =  DEPTH_MAX_H  
+
+# RATIO_GEOM_BELOW (-) :  Ratio of the geometrical series defining the thickness below DEPTH_GEOM 	{}
+RATIO_GEOM_BELOW =  2 
+
+# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
+ALMA_OUTPUT =  n 
+
+# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
+OUTPUT_FILE =  sechiba_history.nc 
+
+# WRITE_STEP ([seconds]) :  Frequency in seconds for sechiba_history.nc file with IOIPSL 	{OK_SECHIBA, NOT XIOS_ORCHIDEE_OK}
+WRITE_STEP =  86400. 
+
+# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
+SECHIBA_HISTLEVEL =  5 
+
+# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
+SECHIBA_HISTFILE2 =  n 
+
+# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
+WRITE_STEP2 =  1800.0 
+
+# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
+SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
+
+# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
+SECHIBA_HISTLEVEL2 =  1 
+
+# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_OUTPUT_FILE =  stomate_history.nc 
+
+# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
+STOMATE_HIST_DT =  10. 
+
+# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
+
+# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
+STOMATE_IPCC_HIST_DT =  0. 
+
+# OK_HISTSYNC ([FLAG]) :  Syncronize and write IOIPSL output files at each time step 	{}
+OK_HISTSYNC =  FALSE 
+
+# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
+STOMATE_HISTLEVEL =  10 
+
 # SECHIBA_restart_in ([FILE]) :  Name of restart to READ for initial conditions 	{OK_SECHIBA }
 SECHIBA_restart_in =  NONE 
@@ -190,51 +229,15 @@
 SECHIBA_rest_out =  sechiba_rest_out.nc 
 
-# SECHIBA_reset_time ([FLAG]) :  Override the time from the restart files for SECHIBA and STOMATE 	{OK_SECHIBA}
-SECHIBA_reset_time =  y 
-
-# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
+# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE}
 STOMATE_RESTART_FILEIN =  NONE 
 
-# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
-STOMATE_RESTART_FILEOUT =  stomate_restart.nc 
-
-# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
-ALMA_OUTPUT =  n 
-
-# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
-OUTPUT_FILE =  sechiba_history.nc 
-
-# WRITE_STEP ([seconds]) :  Frequency in seconds at which to WRITE output 	{OK_SECHIBA}
-WRITE_STEP =  86400. 
-
-# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
-SECHIBA_HISTLEVEL =  5 
-
-# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
-SECHIBA_HISTFILE2 =  n 
-
-# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
-WRITE_STEP2 =  1800.0 
-
-# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
-SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
-
-# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
-SECHIBA_HISTLEVEL2 =  1 
-
-# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_OUTPUT_FILE =  stomate_history.nc 
-
-# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
-STOMATE_HIST_DT =  10. 
-
-# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
-
-# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
-STOMATE_IPCC_HIST_DT =  0. 
-
-# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
-STOMATE_HISTLEVEL =  10 
+# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE}
+STOMATE_RESTART_FILEOUT =  stomate_rest_out.nc 
+
+# FORCE_CO2_VEG ([FLAG]) :  Flag to force the value of atmospheric CO2 for vegetation. 	{Only in coupled mode}
+FORCE_CO2_VEG =  FALSE 
+
+# TAU_OUTFLOW ([days]) :  Number of days over which the coastal- and riverflow will be distributed 	{Only in coupled mode}
+TAU_OUTFLOW =  0 
 
 # ECCENTRICITY ([-]) :  Use prescribed values 	{ALLOW_WEATHERGEN}
@@ -247,7 +250,4 @@
 OBLIQUITY =  23.446 
 
-# OK_THROUGHFALL_PFT ([FLAG]) :  Activate use of PERCENT_THROUGHFALL_PFT 	{HYDROL_CWRR}
-OK_THROUGHFALL_PFT =  FALSE 
-
 # PFT_TO_MTC ([-]) :  correspondance array linking a PFT to MTC 	{OK_SECHIBA or OK_STOMATE}
 PFT_TO_MTC =  1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 
@@ -271,4 +271,10 @@
 SLOWPROC_HEIGHT =  0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1., 1. 
 
+# Z0_OVER_HEIGHT ([-] ) :  factor to calculate roughness height from height of canopy  	{OK_SECHIBA}
+Z0_OVER_HEIGHT =  0., 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625 
+
+# RATIO_Z0M_Z0H ([-]) :  Ratio between z0m and z0h 	{OK_SECHIBA}
+RATIO_Z0M_Z0H =  1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0  
+
 # TYPE_OF_LAI ([-]) :  Type of behaviour of the LAI evolution algorithm  	{OK_SECHIBA}
 TYPE_OF_LAI =  inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter 
@@ -283,26 +289,29 @@
 VCMAX_FIX =  0., 40., 50., 30., 35., 40.,30., 40., 35., 60., 60., 70., 70. 
 
-# DOWNREGULATION_CO2_COEFF ([-]) :  coefficient for CO2 downregulation (unitless) 	{OK_CO2}
-DOWNREGULATION_CO2_COEFF =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
-
-# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{OK_CO2}
+# DOWNREG_CO2 ([-]) :  coefficient for CO2 downregulation (unitless) 	{}
+DOWNREG_CO2 =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
+
+# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{}
 E_KmC =  -9999.,  79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430. 
 
-# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{OK_CO2}
+# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{}
 E_KmO =  -9999., 36380.,  36380.,  36380.,  36380.,  36380., 36380., 36380., 36380., 36380., 36380., 36380., 36380. 
 
-# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{OK_CO2}
+# E_Sco ([J mol-1]) :  Energy of activation for Sco 	{}
+E_Sco =  -9999., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460. 
+
+# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{}
 E_gamma_star =  -9999., 37830.,  37830.,  37830.,  37830.,  37830., 37830., 37830., 37830., 37830., 37830., 37830., 37830. 
 
-# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{OK_CO2}
+# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{}
 E_Vcmax =  -9999., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 67300., 71513., 67300. 
 
-# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{OK_CO2}
+# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{}
 E_Jmax =  -9999., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 77900., 49884., 77900.  
 
-# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 aSV =  -9999., 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 641.64, 668.39, 641.64  
 
-# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 bSV =  -9999., -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, 0., -1.07, 0.  
 
@@ -313,21 +322,30 @@
 TPHOTO_MAX =  -9999., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55. 
 
-# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 aSJ =  -9999., 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 630., 659.70, 630.  
 
-# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 bSJ =  -9999., -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, 0., -0.75, 0.  
 
-# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{OK_CO2}
+# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{}
 D_Vcmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{OK_CO2}
+# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{}
 D_Jmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{OK_CO2}
+# E_gm  ([J mol-1] ) :  Energy of activation for gm  	{ }
+E_gm  =  -9999., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., -9999., 49600., -9999.  
+
+# S_gm  ([J K-1 mol-1] ) :  Entropy term for gm  	{ }
+S_gm  =  -9999., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., -9999., 1400., -9999.  
+
+# D_gm  ([J mol-1] ) :  Energy of deactivation for gm  	{ }
+D_gm  =  -9999., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., -9999., 437400., -9999.  
+
+# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{}
 E_Rd =  -9999., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390. 
 
 # VCMAX25 ([micromol/m^2/s]) :  Maximum rate of Rubisco activity-limited carboxylation at 25Â°C 	{OK_STOMATE}
-VCMAX25 =  -9999., 65., 65., 35., 45., 55., 35., 45., 35., 70., 70., 70., 70. 
+VCMAX25 =  -9999., 45.0, 45.0, 35.0, 40.0, 50.0, 45.0, 35.0, 35.0, 50.0, 50.0, 60.0, 60.0 
 
 # ARJV ([mu mol e- (mu mol CO2)-1]) :  a coefficient of the linear regression (a+bT) defining the Jmax25/Vcmax25 ratio  	{OK_STOMATE}
@@ -337,54 +355,72 @@
 BRJV =  -9999., -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, 0., -0.035, 0. 
 
-# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{OK_CO2}
+# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{}
 KmC25 =  -9999., 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 650., 404.9, 650. 
 
-# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{OK_CO2}
+# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{}
 KmO25 =  -9999., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 450000., 278400., 450000. 
 
-# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{OK_CO2}
+# Sco25 ([bar bar-1]) :  Relative CO2 /O2 specificity factor for Rubisco at 25ÃÂ°C 	{}
+Sco25 =  -9999., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2590., 2800., 2590. 
+
+# gm25  ([mol m-2 s-1 bar-1] ) :  Mesophyll diffusion conductance at 25ÃÂÃÂ°C  	{ }
+gm25  =  -9999., 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, -9999., 0.4, -9999.  
+
+# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{}
 gamma_star25 =  -9999., 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75 
 
-# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
-a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85 
-
-# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
+# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
+a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.72, 0.85, 0.72 
+
+# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
 b1 =  -9999., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.20, 0.14, 0.20 
 
-# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{OK_CO2}
+# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{}
 g0 =  -9999., 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.01875, 0.00625, 0.01875  
 
-# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{OK_CO2}
+# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{}
 h_protons =  -9999., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4.  
 
-# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{OK_CO2}
+# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{}
 fpsir =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.4, -9999., 0.4  
 
-# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{OK_CO2}
+# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{}
 fQ =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 1., -9999., 1. 
 
-# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{OK_CO2}
+# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{}
 fpseudo =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{OK_CO2}
+# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{}
 kp =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.7, -9999., 0.7 
 
-# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{OK_CO2}
+# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{}
 alpha =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{OK_CO2}
+# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{}
 gbs =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.003, -9999., 0.003 
 
-# theta ([â]) :  Convexity factor for response of J to irradiance 	{OK_CO2}
+# theta ([â]) :  Convexity factor for response of J to irradiance 	{}
 theta =  -9999., 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7 
 
-# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{OK_CO2}
+# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{}
 alpha_LL =  -9999., 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372 
+
+# STRESS_VCMAX ([-]) :  Stress on vcmax 	{OK_SECHIBA or OK_STOMATE}
+STRESS_VCMAX =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GS ([-]) :  Stress on gs 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GS =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GM ([-]) :  Stress on gm 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GM =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
 
 # EXT_COEFF ([-]) :  extinction coefficient of the Monsi&Seaki relationship (1953) 	{OK_SECHIBA or OK_STOMATE}
 EXT_COEFF =  .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5 
 
+# EXT_COEFF_VEGETFRAC ([-]) :  extinction coefficient used for the calculation of the bare soil fraction  	{OK_SECHIBA or OK_STOMATE}
+EXT_COEFF_VEGETFRAC =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
 # HYDROL_HUMCSTE ([m]) :  Root profile 	{OK_SECHIBA}
-HYDROL_HUMCSTE =  humcste_cwrr or humcste_mct depending on flag HYDROL_CWRR 
+HYDROL_HUMCSTE =  humcste_ref2m or humcste_ref4m depending on zmaxh 
 
 # PREF_SOIL_VEG ([-]        ) :  The soil tile number for each vegetation 	{OK_SECHIBA or OK_STOMATE}
@@ -403,65 +439,128 @@
 WMAX_VEG =  150., 150., 150., 150., 150., 150., 150.,150., 150., 150., 150., 150., 150. 
 
-# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy 	{OK_SECHIBA OR HYDROL_CWRR}
-PERCENT_THROUGHFALL_PFT =  30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 
-
-# SNOWA_AGED ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow) 	{OK_SECHIBA}
-SNOWA_AGED =  0.35, 0., 0., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.18, 0.18, 0.18, 0.18 
-
-# SNOWA_DEC ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow 	{OK_SECHIBA}
-SNOWA_DEC =  0.45, 0.,  0., 0.06, 0.06, 0.11, 0.06, 0.11, 0.11, 0.52,0.52, 0.52, 0.52 
+# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy. Default value depend on run mode. 	{OK_SECHIBA}
+PERCENT_THROUGHFALL_PFT =  Case offline [0. 0. 0....] else [30. 30. 30.....] 
+
+# SNOWA_AGED_VIS ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), visible albedo 	{OK_SECHIBA}
+SNOWA_AGED_VIS =  0.74, 0.0, 0.0, 0.08, 0.24, 0.07, 0.18, 0.18, 0.33, 0.57, 0.57, 0.57, 0.57 
+
+# SNOWA_AGED_NIR ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), near infrared albedo 	{OK_SECHIBA}
+SNOWA_AGED_NIR =  0.50, 0.0, 0.0, 0.10, 0.37, 0.08, 0.16, 0.17, 0.27, 0.44, 0.44, 0.44, 0.44   
+
+# SNOWA_DEC_VIS ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, visible albedo 	{OK_SECHIBA}
+SNOWA_DEC_VIS =  0.21, 0.0, 0.0, 0.14, 0.08, 0.17, 0.05, 0.06, 0.09, 0.15, 0.15, 0.15, 0.15  
+
+# SNOWA_DEC_NIR ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, near infrared albedo 	{OK_SECHIBA}
+SNOWA_DEC_NIR =  0.13, 0.0, 0.0, 0.10, 0.10, 0.16, 0.04, 0.07, 0.08, 0.12, 0.12, 0.12, 0.12 
 
 # ALB_LEAF_VIS ([-]) :  leaf albedo of vegetation type, visible albedo 	{OK_SECHIBA}
-ALB_LEAF_VIS =  .00, .04, .06, .06, .06,.06, .06, .06, .06, .10, .10, .10, .10 
+ALB_LEAF_VIS =  0.00, 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.06, 0.06, 0.06, 0.06 
 
 # ALB_LEAF_NIR ([-]) :  leaf albedo of vegetation type, near infrared albedo 	{OK_SECHIBA}
-ALB_LEAF_NIR =  .00, .20, .22, .22, .22,.22, .22, .22, .22, .30, .30, .30, .30  
-
-# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{DIFFUCO_OK_INCA}
+ALB_LEAF_NIR =  0.00, 0.23, 0.18, 0.18, 0.20, 0.24, 0.15, 0.26, 0.20, 0.24, 0.27, 0.28, 0.26 
+
+# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{CHEMISTRY_BVOC}
 ISO_ACTIVITY =  0.5, 1.5, 1.5, 0.5 
 
-# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{DIFFUCO_OK_INCA}
+# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{CHEMISTRY_BVOC}
 METHANOL_ACTIVITY =  1., 1., 0.5, 0.5 
 
-# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 8., 8., 16., 24., 5., 5. 
-
-# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MONOTERPENE =  0., 0.8, 0.8, 2.4, 1.2, 0.8, 2.4, 2.4, 2.4, 0.8, 1.2, 0.2, 0.2 
-
-# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{DIFFUCO_OK_INCA }
+# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 18., 0.5, 12., 18., 5., 5. 
+
+# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MONOTERPENE =  0., 2.0, 2.0, 1.8, 1.4, 1.6, 1.8, 1.4, 1.8, 0.8, 0.8,  0.22, 0.22 
+
+# C_LDF_MONO  ([]) :  Monoterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_MONO  =  0.6 
+
+# C_LDF_SESQ  ([]) :  Sesquiterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_SESQ  =  0.5 
+
+# C_LDF_METH  ([]) :  Methanol fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_METH  =  0.8 
+
+# C_LDF_ACET  ([]) :  Acetone fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_ACET  =  0.2 
+
+# EM_FACTOR_APINENE  ([ugC/g/h] ) :  Alfa pinene  emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_APINENE  =  0., 1.35, 1.35, 0.85, 0.95, 0.75, 0.85, 0.60, 1.98, 0.30, 0.30, 0.09, 0.09 
+
+# EM_FACTOR_BPINENE ([ugC/g/h] ) :  Beta pinene  emission factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_BPINENE =  0., 0.30, 0.30, 0.35, 0.25, 0.20, 0.35, 0.12, 0.45, 0.16, 0.12, 0.05, 0.05 
+
+# EM_FACTOR_LIMONENE ([ugC/g/h] ) :  Limonene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_LIMONENE =  0., 0.25, 0.25, 0.20, 0.25, 0.14, 0.20, 0.135, 0.11, 0.19, 0.42, 0.03, 0.03 
+
+# EM_FACTOR_MYRCENE ([ugC/g/h] ) :  Myrcene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_MYRCENE =  0., 0.20, 0.20, 0.12, 0.11, 0.065, 0.12, 0.036, 0.075, 0.08,  0.085, 0.015, 0.015 
+
+# EM_FACTOR_SABINENE ([ugC/g/h] ) :  Sabinene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_SABINENE =  0., 0.20, 0.20, 0.12, 0.17, 0.70, 0.12, 0.50, 0.09, 0.085, 0.075, 0.02, 0.02 
+
+# EM_FACTOR_CAMPHENE  ([ugC/g/h] ) :  Camphene  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_CAMPHENE  =  0., 0.15, 0.15, 0.10, 0.10, 0.01, 0.10, 0.01, 0.07, 0.07, 0.08, 0.01, 0.01 
+
+# EM_FACTOR_3CARENE  ([ugC/g/h] ) :  3-Carene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_3CARENE  =  0., 0.13, 0.13, 0.42, 0.02, 0.055, 0.42,0.025, 0.125, 0.085, 0.085, 0.065, 0.065 
+
+# EM_FACTOR_TBOCIMENE ([ugC/g/h] ) :  T-beta-ocimene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_TBOCIMENE =  0., 0.25, 0.25, 0.13, 0.09, 0.26, 0.13, 0.20, 0.085, 0.18, 0.18, 0.01, 0.01 
+
+# EM_FACTOR_OTHERMONOT ([ugC/g/h] ) :  Other monoterpenes  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_OTHERMONOT =  0., 0.17, 0.17, 0.11, 0.11, 0.125, 0.11, 0.274, 0.01, 0.15, 0.155, 0.035, 0.035 
+
+# EM_FACTOR_SESQUITERP  ([ugC/g/h] ) :  Sesquiterpenes  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_SESQUITERP  =  0., 0.45, 0.45, 0.13, 0.3, 0.36, 0.15, 0.3, 0.25, 0.6, 0.6, 0.08, 0.08 
+
+# C_BETA_MONO  ([]) :  Monoterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_MONO  =  0.1 
+
+# C_BETA_SESQ  ([]) :  Sesquiterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_SESQ  =  0.17 
+
+# C_BETA_METH  ([]) :  Methanol temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_METH  =  0.08 
+
+# C_BETA_ACET  ([]) :  Acetone temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_ACET  =  0.1 
+
+# C_BETA_OXYVOC  ([]) :  Other oxygenated BVOC temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_OXYVOC  =  0.13 
+
+# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{CHEMISTRY_BVOC }
 EM_FACTOR_ORVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{DIFFUCO_OK_INCA}
+# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{CHEMISTRY_BVOC}
 EM_FACTOR_OVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MBO =  0., 0., 0., 20.0, 0., 0., 0., 0., 0., 0., 0., 0., 0. 
-
-# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_METHANOL =  0., 0.6, 0.6, 1.8, 0.9, 0.6, 1.8, 1.8, 1.8, 0.6, 0.9, 2., 2. 
-
-# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETONE =  0., 0.29, 0.29, 0.87, 0.43, 0.29, 0.87, 0.87, 0.87, 0.29, 0.43, 0.07, 0.07  
-
-# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{DIFFUCO_OK_INCA}
-EM_FACTOR_ACETAL =  0., 0.1, 0.1, 0.3, 0.15, 0.1, 0.3, 0.3, 0.3, 0.1, 0.15, 0.025, 0.025 
-
-# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_FORMAL =  0., 0.07, 0.07, 0.2, 0.1, 0.07, 0.2, 0.2, 0.2, 0.07, 0.1, 0.017, 0.017 
-
-# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETIC =  0., 0.002, 0.002, 0.006, 0.003, 0.002, 0.006, 0.006, 0.006, 0.002, 0.003, 0.0005, 0.0005 
-
-# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_FORMIC =  0., 0.01, 0.01, 0.03, 0.015, 0.01, 0.03, 0.03, 0.03, 0.01, 0.015, 0.0025, 0.0025  
-
-# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MBO =  0., 2.e-5, 2.e-5, 1.4, 2.e-5, 2.e-5, 0.14, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5 
+
+# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_METHANOL =  0., 0.8, 0.8, 1.8, 0.9, 1.9, 1.8, 1.8, 1.8, 0.7, 0.9, 2., 2. 
+
+# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETONE =  0., 0.25, 0.25, 0.3, 0.2, 0.33, 0.3, 0.25, 0.25, 0.2, 0.2, 0.08, 0.08 
+
+# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_ACETAL =  0., 0.2, 0.2, 0.2, 0.2, 0.25, 0.25, 0.16, 0.16, 0.12, 0.12, 0.035, 0.02 
+
+# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_FORMAL =  0., 0.04, 0.04, 0.08, 0.04, 0.04, 0.04, 0.04, 0.04, 0.025, 0.025, 0.013, 0.013 
+
+# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETIC =  0., 0.025, 0.025,0.025,0.022,0.08,0.025,0.022,0.013,0.012,0.012,0.008,0.008 
+
+# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_FORMIC =  0., 0.015, 0.015, 0.02, 0.02, 0.025, 0.025, 0.015, 0.015,0.010,0.010,0.008,0.008 
+
+# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_WET =  0., 2.6, 0.06, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.36, 0.36, 0.36, 0.36 
 
-# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_DRY =  0., 8.60, 0.40, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 2.65, 2.65, 2.65, 2.65 
 
-# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{DIFFUCO_OK_INCA }
+# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{CHEMISTRY_BVOC }
 LARCH =  0., 0.015, 0.015, 0.003, 0.005, 0.005, 0.003, 0.005, 0.003, 0.005, 0.005, 0.008, 0.008 
 
@@ -469,9 +568,18 @@
 SLA =  1.5E-2, 1.53E-2, 2.6E-2, 9.26E-3, 2E-2, 2.6E-2, 9.26E-3, 2.6E-2, 1.9E-2, 2.6E-2, 2.6E-2, 2.6E-2, 2.6E-2 
 
+# AVAILABILITY_FACT  ([-]   ) :  Calculate dynamic mortality in lpj_gap, pft dependent parameter 	{OK_STOMATE }
+AVAILABILITY_FACT  =  -9999., 0.14, 0.14, 0.10, 0.10, 0.10, 0.05, 0.05, 0.05, -9999., -9999., -9999., -9999.  
+
+# R0  ([-]    ) :  Standard root allocation  	{OK_STOMATE }
+R0  =  -9999., .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
+
 # S0  ([-]    ) :  Standard sapwood allocation  	{OK_STOMATE }
 S0  =  -9999., .25, .25, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
 
+# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE}
+FRAC_GROWTHRESP =  -9999., 0.35, 0.35, 0.28, 0.28, 0.28, 0.35, 0.35, 0.35, 0.28, 0.28, 0.28, 0.28 
+
 # MAINT_RESP_SLOPE_C ([-]) :  slope of maintenance respiration coefficient (1/K), constant c of aT^2+bT+c , tabulated 	{OK_STOMATE}
-MAINT_RESP_SLOPE_C =  -9999., .20, .20, .16, .16, .16, .16, .16, .16, .16, .12, .16, .12  
+MAINT_RESP_SLOPE_C =  -9999., 0.12, 0.12, 0.16, 0.16, 0.16, 0.25, 0.25, 0.25, 0.16, 0.12, 0.16, 0.12 
 
 # MAINT_RESP_SLOPE_B ([-]) :  slope of maintenance respiration coefficient (1/K), constant b of aT^2+bT+c , tabulated 	{OK_STOMATE}
@@ -520,6 +628,9 @@
 COEFF_LCCHANGE_100 =  -9999., 0., 0., 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0., 0.104, 0. 
 
+# LAI_MAX_TO_HAPPY ([-]) :  threshold of LAI below which plant uses carbohydrate reserves 	{OK_STOMATE}
+LAI_MAX_TO_HAPPY =  -9999., .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5  
+
 # LAI_MAX ([m^2/m^2]) :  maximum LAI, PFT-specific 	{OK_STOMATE}
-LAI_MAX =  -9999., 7., 7., 5., 5., 5., 4.5, 4.5, 3.0, 2.5, 2.5, 5.,5.  
+LAI_MAX =  -9999., 7.0, 5.0, 5.0, 4.0, 5.0, 3.5, 4.0, 3.0, 2.5, 2.0, 5.0, 5.0 
 
 # PHENO_TYPE ([-]) :  type of phenology, 0 	{OK_STOMATE}
@@ -535,4 +646,7 @@
 PHENO_GDD_CRIT_A =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.03125,  0., 0., 0. 
 
+# PHENO_MOIGDD_T_CRIT ([C]) :  Average temperature threashold for C4 grass used in pheno_moigdd 	{OK_STOMATE}
+PHENO_MOIGDD_T_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 22.0, -9999., -9999. 
+
 # NGD_CRIT ([days]) :  critical ngd, tabulated. Threshold -5 degrees 	{OK_STOMATE}
 NGD_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0., -9999., -9999., -9999., -9999., -9999. 
@@ -550,4 +664,7 @@
 TAU_SAP =  -9999., 730., 730., 730., 730., 730., 730., 730., 730., -9999., -9999., -9999., -9999. 
 
+# TAU_LEAFINIT ([days]) :  time to attain the initial foliage using the carbohydrate reserve 	{OK_STOMATE}
+TAU_LEAFINIT =  -9999., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10. 
+
 # TAU_FRUIT ([days]) :  fruit lifetime 	{OK_STOMATE}
 TAU_FRUIT =  -9999., 90., 90., 90., 90., 90., 90., 90., 90., -9999., -9999., -9999., -9999. 
@@ -604,4 +721,7 @@
 GDD_SENESCENCE =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 950., 4000. 
 
+# ALWAYS_INIT ([BOOLEAN]) :  Take carbon from atmosphere if carbohydrate reserve too small 	{OK_STOMATE}
+ALWAYS_INIT =  y, y, y, y, y, y, y, y, y, y, n, y, y 
+
 # RESIDENCE_TIME ([years]) :  residence time of trees 	{OK_DGVM and NOT(LPJ_GAP_CONST_MORT)}
 RESIDENCE_TIME =  -9999., 30.0, 30.0, 40.0, 40.0, 40.0, 80.0, 80.0, 80.0, 0.0, 0.0, 0.0, 0.0  
@@ -619,6 +739,6 @@
 TREAT_EXPANSION =  n 
 
-# LPJ_GAP_CONST_MORT ([FLAG]) :  prescribe mortality if not using DGVM? 	{OK_STOMATE}
-LPJ_GAP_CONST_MORT =  y 
+# LPJ_GAP_CONST_MORT ([FLAG]) :  Constant mortality 	{OK_STOMATE AND NOT OK_DGVM}
+LPJ_GAP_CONST_MORT =  y/n depending on OK_DGVM 
 
 # HARVEST_AGRI ([FLAG]) :  Harvest model for agricultural PFTs. 	{OK_STOMATE }
@@ -626,5 +746,5 @@
 
 # FIRE_DISABLE ([FLAG]) :  no fire allowed 	{OK_STOMATE }
-FIRE_DISABLE =  n 
+FIRE_DISABLE =  y 
 
 # SPINUP_ANALYTIC (BOOLEAN    ) :  Activation of the analytic resolution of the spinup. 	{OK_STOMATE}
@@ -643,26 +763,17 @@
 LAI_MAP =  n 
 
-# SLOWPROC_LAI_OLD_INTERPOL ([FLAG]) :  Flag to use old "interpolation" of LAI 	{LAI_MAP}
-SLOWPROC_LAI_OLD_INTERPOL =  n 
-
-# LAND_USE ([FLAG]) :  Read a land_use vegetation map 	{OK_SECHIBA or OK_STOMATE}
-LAND_USE =  y 
-
-# VEGET_REINIT ([FLAG] ) :  booleen to indicate that a new LAND USE file will be used. 	{LAND_USE}
+# VEGET_REINIT ([FLAG] ) :  Reset veget_year counter (obsolet) 	{VEGET_UPDATE > 0Y}
 VEGET_REINIT =  y 
 
-# LAND_COVER_CHANGE ([FLAG] ) :  treat land use modifications 	{LAND_USE}
-LAND_COVER_CHANGE =  n 
-
-# VEGET_YEAR ([FLAG] ) :  Year of the land_use vegetation map to be read 	{LAND_USE}
+# VEGETMAP_RESET ([FLAG] ) :  Flag to change vegetation map without activating LAND USE change for carbon fluxes and reset carbon related variables to zero 	{}
+VEGETMAP_RESET =  n 
+
+# VEGET_YEAR ([FLAG] ) :  Year of the vegetation map to be read 	{}
 VEGET_YEAR =  1 
 
-# SLOWPROC_VEGET_OLD_INTERPOL ([FLAG] ) :  Flag to use old "interpolation" of vegetation map. 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-SLOWPROC_VEGET_OLD_INTERPOL =  n 
-
-# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA or HYDROL_CWRR}
+# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA}
 MAXMASS_SNOW =  3000. 
 
-# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA or HYDROL_CWRR}
+# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA}
 SNOWCRI =  1.5 
 
@@ -674,8 +785,20 @@
 
 # SNOW_TRANS ([m]   ) :  Transformation time constant for snow 	{OK_SECHIBA}
-SNOW_TRANS =  0.3 
-
-# Z0_OVER_HEIGHT ([-]   ) :  to get z0 from height  	{OK_SECHIBA }
-Z0_OVER_HEIGHT =  1/16. 
+SNOW_TRANS =  0.2 
+
+# OK_NUDGE_MC ([FLAG]) :  Activate nudging of soil moisture 	{}
+OK_NUDGE_MC =  n 
+
+# NUDGE_TAU_MC ([-]) :  Relaxation time for nudging of soil moisture expressed in fraction of the day 	{OK_NUDGE_MC}
+NUDGE_TAU_MC =  1 
+
+# OK_NUDGE_SNOW ([FLAG]) :  Activate nudging of snow variables 	{}
+OK_NUDGE_SNOW =  n 
+
+# NUDGE_TAU_SNOW ([-]) :  Relaxation time for nudging of snow variables 	{OK_NUDGE_SNOW}
+NUDGE_TAU_SNOW =  1 
+
+# NUDGE_INTERPOL_WITH_XIOS ([FLAG]) :  Activate reading and interpolation with XIOS for nudging fields 	{OK_NUDGE_MC or OK_NUDGE_SNOW}
+NUDGE_INTERPOL_WITH_XIOS =  n 
 
 # HEIGHT_DISPLACEMENT ([m]  ) :  Magic number which relates the height to the displacement height. 	{OK_SECHIBA }
@@ -689,5 +812,5 @@
 
 # TCST_SNOWA ([days]) :  Time constant of the albedo decay of snow 	{OK_SECHIBA }
-TCST_SNOWA =  5.0  
+TCST_SNOWA =  10.0  
 
 # SNOWCRI_ALB ([cm]  ) :  Critical value for computation of snow albedo 	{OK_SECHIBA}
@@ -724,6 +847,6 @@
 ALB_BARE_MODEL =  n 
 
-# Z0CDRAG_AVE ([FLAG]) :  Average method for z0 	{OK_SECHIBA}
-Z0CDRAG_AVE =  y 
+# ALB_BG_MODIS ([FLAG]) :  Read bare soil albedo from file with background MODIS data 	{OK_SECHIBA}
+ALB_BG_MODIS =  y 
 
 # IMPOSE_AZE ([FLAG]) :  Should the surface parameters be prescribed 	{OK_SECHIBA}
@@ -745,4 +868,103 @@
 CONDVEG_EMIS =  1.0 
 
+# ROUGH_DYN ([FLAG]) :  Account for a dynamic roughness height 	{OK_SECHIBA}
+ROUGH_DYN =  y 
+
+# C1 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C1 =  0.32 
+
+# C2 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C2 =  0.264 
+
+# C3 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C3 =  15.1 
+
+# Cdrag_foliage ([-] ) :  Drag coefficient of the foliage 	{ROUGH_DYN}
+Cdrag_foliage =  0.2 
+
+# Ct ([-] ) :  Heat transfer coefficient of the leaf 	{ROUGH_DYN}
+Ct =  0.01 
+
+# Prandtl ([-] ) :  Prandtl number used in the calculation of Ct* 	{ROUGH_DYN}
+Prandtl =  0.71 
+
+# xansmax  ([-] ) :  maximum snow albedo 	{OK_SECHIBA}
+xansmax  =  0.85 
+
+# xansmin  ([-] ) :  minimum snow albedo 	{OK_SECHIBA}
+xansmin  =  0.50 
+
+# xans_todry  ([S-1] ) :  albedo decay rate for the dry snow  	{OK_SECHIBA}
+xans_todry  =  0.008 
+
+# xans_t  ([S-1] ) :  albedo decay rate for the wet snow  	{OK_SECHIBA}
+xans_t  =  0.24 
+
+# xrhosmax  ([-] ) :  maximum snow density  	{OK_SECHIBA}
+xrhosmax  =  750 
+
+# xwsnowholdmax1 ([-] ) :  snow holding capacity 1 	{OK_SECHIBA}
+xwsnowholdmax1 =  0.03 
+
+# xwsnowholdmax2 ([-] ) :  snow holding capacity 2 	{OK_SECHIBA}
+xwsnowholdmax2 =  0.10 
+
+# xsnowrhohold  ([kg/m3] ) :  snow density  	{OK_SECHIBA}
+xsnowrhohold  =  200.0 
+
+# ZSNOWTHRMCOND1 ([W/m/K] ) :  Thermal conductivity Coef 1 	{OK_SECHIBA}
+ZSNOWTHRMCOND1 =  0.02  
+
+# ZSNOWTHRMCOND2 ([W m5/(kg2 K)] ) :  Thermal conductivity Coef 2 	{OK_SECHIBA}
+ZSNOWTHRMCOND2 =  2.5E-6 
+
+# ZSNOWTHRMCOND_AVAP ([W/m/K] ) :  Thermal conductivity Coef 1 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_AVAP =  -0.06023 
+
+# ZSNOWTHRMCOND_BVAP ([W/m] ) :  Thermal conductivity Coef 2 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_BVAP =  -2.5425 
+
+# ZSNOWTHRMCOND_CVAP ([K] ) :  Thermal conductivity Coef 3 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_CVAP =  -289.99 
+
+# ZSNOWCMPCT_RHOD ([kg/m3]) :  Snow compaction coefficent 	{OK_SECHIBA}
+ZSNOWCMPCT_RHOD =  150.0 
+
+# ZSNOWCMPCT_ACM ([1/s]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_ACM =  2.8e-6 
+
+# ZSNOWCMPCT_BCM ([1/K]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_BCM =  0.04 
+
+# ZSNOWCMPCT_CCM ([m3/kg] ) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_CCM =  460. 
+
+# ZSNOWCMPCT_V0 ([Pa/s]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_V0 =  3.7e7 
+
+# ZSNOWCMPCT_VT ([1/K]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VT =  0.081 
+
+# ZSNOWCMPCT_VR ([m3/kg]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VR =  0.018 
+
+# CB ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CB =  5.0 
+
+# CC ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CC =  5.0 
+
+# CD ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CD =  5.0 
+
+# RAYT_CSTE ([W.m^{-2}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+RAYT_CSTE =  125 
+
+# DEFC_PLUS ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_PLUS =  23.E-3 
+
+# DEFC_MULT ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_MULT =  1.5 
+
 # NLAI ([-]  ) :  Number of LAI levels 	{OK_SECHIBA}
 NLAI =  20 
@@ -755,12 +977,21 @@
 
 # DOWNREGULATION_CO2 ([FLAG]   ) :  Activation of CO2 downregulation 	{OK_SECHIBA}
-DOWNREGULATION_CO2 =  n  
+DOWNREGULATION_CO2 =  y 
 
 # DOWNREGULATION_CO2_BASELEVEL ([ppm]   ) :  CO2 base level 	{OK_SECHIBA }
-DOWNREGULATION_CO2_BASELEVEL =  280. 
+DOWNREGULATION_CO2_BASELEVEL =  380. 
+
+# GB_REF ([s m-1]   ) :  Leaf bulk boundary layer resistance 	{}
+GB_REF =  1./25. 
 
 # CLAYFRACTION_DEFAULT ([-]   ) :  default fraction of clay 	{OK_SECHIBA }
 CLAYFRACTION_DEFAULT =  0.2  
 
+# SANDFRACTION_DEFAULT ([-]   ) :  default fraction of sand 	{OK_SECHIBA }
+SANDFRACTION_DEFAULT =  0.4  
+
+# SILTFRACTION_DEFAULT ([-]   ) :  default fraction of silt 	{OK_SECHIBA }
+SILTFRACTION_DEFAULT =  0.4  
+
 # MIN_VEGFRAC  ([-]  ) :  Minimal fraction of mesh a vegetation type can occupy  	{OK_SECHIBA }
 MIN_VEGFRAC  =  0.001  
@@ -769,8 +1000,8 @@
 STEMPDIAG_BID  =  280. 
 
-# LAI_LEVEL_DEPTH ([-]  ) :   	{OK_CO2}
+# LAI_LEVEL_DEPTH ([-]  ) :   	{}
 LAI_LEVEL_DEPTH =  0.15 
 
-# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{OK_CO2}
+# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{}
 Oi =  210000. 
 
@@ -796,7 +1027,4 @@
 FIREFRAC_COEFF  =  0.45, 0.8, 0.6, 0.13 
 
-# AVAILABILITY_FACT  ([-]   ) :   	{OK_STOMATE }
-AVAILABILITY_FACT  =  0.1 
-
 # REF_GREFF ([1/year]  ) :  Asymptotic maximum mortality rate 	{OK_STOMATE }
 REF_GREFF =  0.035 
@@ -805,7 +1033,4 @@
 OK_MINRES =  y 
 
-# TAU_LEAFINIT ([days]  ) :  time to attain the initial foliage using the carbohydrate reserve  	{OK_STOMATE }
-TAU_LEAFINIT =  10. 
-
 # RESERVE_TIME_TREE  ([days]    ) :  maximum time during which reserve is used (trees)  	{OK_STOMATE }
 RESERVE_TIME_TREE  =  30. 
@@ -814,7 +1039,4 @@
 RESERVE_TIME_GRASS  =  20.  
 
-# R0 ([-]  ) :  Standard root allocation  	{OK_STOMATE }
-R0 =  0.3  
-
 # F_FRUIT ([-]    ) :  Standard fruit allocation 	{OK_STOMATE }
 F_FRUIT =  0.1  
@@ -832,7 +1054,4 @@
 Z_NITROGEN =  0.2  
 
-# LAI_MAX_TO_HAPPY ([-]  ) :   	{OK_STOMATE }
-LAI_MAX_TO_HAPPY =  0.5  
-
 # NLIM_TREF  ([C]  ) :   	{OK_STOMATE }
 NLIM_TREF  =  25.  
@@ -877,7 +1096,4 @@
 MASS_RATIO_HEART_SAP =  3. 
 
-# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE }
-FRAC_GROWTHRESP =  0.28 
-
 # TAU_HUM_MONTH ([days]  ) :  time scales for phenology and other processes 	{OK_STOMATE }
 TAU_HUM_MONTH =  20.  
@@ -1012,4 +1228,7 @@
 MOIST_COEFF =  1.1, 2.4, 0.29 
 
+# MOISTCONT_MIN ([-]) :  minimum soil wetness to limit the heterotrophic respiration 	{OK_STOMATE }
+MOISTCONT_MIN =  0.25 
+
 # FRAC_TURNOVER_DAILY  ([-]) :   	{OK_STOMATE }
 FRAC_TURNOVER_DAILY  =  0.55 
@@ -1018,7 +1237,4 @@
 TAX_MAX =  0.8 
 
-# ALWAYS_INIT ([-]   ) :  take carbon from atmosphere if carbohydrate reserve too small?  	{OK_STOMATE }
-ALWAYS_INIT =  n  
-
 # MIN_GROWTHINIT_TIME  ([days]  ) :  minimum time since last beginning of a growing season 	{OK_STOMATE }
 MIN_GROWTHINIT_TIME  =  300.  
@@ -1073,8 +1289,8 @@
 
 # CARBON_TAU_ISLOW ([days]) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_ISLOW =  5.48 
+CARBON_TAU_ISLOW =  7.0 
 
 # CARBON_TAU_IPASSIVE ([days] ) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_IPASSIVE =  241. 
+CARBON_TAU_IPASSIVE =  300. 
 
 # FLUX_TOT_COEFF ([days] ) :  	{OK_STOMATE }
@@ -1084,7 +1300,4 @@
 NEW_TURNOVER_TIME_REF =  20.  
 
-# DT_TURNOVER_TIME  ([days]  ) :   	{OK_STOMATE }
-DT_TURNOVER_TIME  =  10. 
-
 # LEAF_AGE_CRIT_TREF ([days]  ) :   	{OK_STOMATE }
 LEAF_AGE_CRIT_TREF =  20.  
@@ -1174,6 +1387,9 @@
 EVERYWHERE_INIT =  0.05  
 
-# THERMOSOIL_NBLEV ((-)) :  Number of soil level 	{}
-THERMOSOIL_NBLEV =  7 
+# PRINTLEV ([0, 1, 2, 3, 4]) :  Print level for text output 	{}
+PRINTLEV =  2 
+
+# PRINTLEV_modname ([0, 1, 2, 3, 4]) :  Specific print level of text output for the module "modname". Default as PRINTLEV. 	{}
+PRINTLEV_modname =  PRINTLEV 
 
 # DRY_SOIL_HEAT_CAPACITY ([J.m^{-3}.K^{-1}] ) :  Dry soil Heat capacity of soils 	{OK_SECHIBA }
@@ -1195,40 +1411,49 @@
 SNOW_DENSITY =  330.0 
 
-# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
+# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{}
 NOBIO_WATER_CAPAC_VOLUMETRI =  150. 
+
+# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
+SECHIBA_QSINT  =  0.02 
+
+# OK_FREEZE ([FLAG]) :  Activate the complet soil freezing scheme 	{OK_SECHIBA }
+OK_FREEZE =  TRUE 
+
+# READ_REFTEMP ([FLAG]) :  Initialize soil temperature using climatological temperature 	{}
+READ_REFTEMP =  True/False depening on OK_FREEZE 
+
+# OK_FREEZE_THERMIX ([FLAG]) :  Activate thermal part of the soil freezing scheme 	{}
+OK_FREEZE_THERMIX =  True if OK_FREEZE else false 
+
+# OK_ECORR ([FLAG]) :  Energy correction for freezing 	{OK_FREEZE_THERMIX}
+OK_ECORR =  True if OK_FREEZE else false 
+
+# OK_FREEZE_THAW_LATENT_HEAT ([FLAG]) :  Activate latent heat part of the soil freezing scheme 	{}
+OK_FREEZE_THAW_LATENT_HEAT =  FALSE  
+
+# POROS ([-] ) :  Soil porosity  	{OK_SECHIBA}
+POROS =  0.41 
+
+# fr_dT ([K] ) :  Freezing window     	{OK_SECHIBA}
+fr_dT =  2.0 
+
+# OK_FREEZE_CWRR ([FLAG]) :  CWRR freezing scheme by I. Gouttevin 	{}
+OK_FREEZE_CWRR =  True if OK_FREEZE else false 
+
+# OK_THERMODYNAMICAL_FREEZING ([FLAG]) :  Calculate frozen fraction thermodynamically  	{OK_FREEZE_CWRR}
+OK_THERMODYNAMICAL_FREEZING =  True 
+
+# CHECK_CWRR ([FLAG]) :  Calculate diagnostics to check CWRR water balance 	{}
+CHECK_CWRR =  n 
+
+# VEGET_UPDATE ([years]) :  Update vegetation frequency: 0Y or 1Y 	{}
+VEGET_UPDATE =  0Y 
+
+# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
+SECHIBA_ZCANOP =  0.5 
 
 # SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
 SECHIBA_QSINT  =  0.1 
 
-# CHOISNEL_DIFF_MIN ([kg/m^2/dt]) :  Diffusion constant for the slow regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MIN =  0.001 
-
-# CHOISNEL_DIFF_MAX ([kg/m^2/dt]) :  Diffusion constant for the fast regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MAX =  0.1 
-
-# CHOISNEL_DIFF_EXP ([-]) :  The exponential in the diffusion law 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_EXP =  1.5 
-
-# CHOISNEL_RSOL_CSTE ([s/m^2]) :  Constant in the computation of resistance for bare  soil evaporation  	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_RSOL_CSTE =  33.E3 
-
-# HCRIT_LITTER ([m]) :  Scaling depth for litter humidity 	{OK_SECHIBA and .NOT.(HYDROL_CWRR) }
-HCRIT_LITTER =  0.08  
-
-# SECHIBA_DAY ([days]) :  Time within the day simulated 	{OK_SECHIBA}
-SECHIBA_DAY =  0.0 
-
-# VEGET_UPDATE ([years]) :  Update vegetation frequency 	{LAND_USE}
-VEGET_UPDATE =  0Y 
-
-# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
-SECHIBA_ZCANOP =  0.5 
-
-# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
-SECHIBA_QSINT  =  0.1 
-
-# DT_SLOW ([seconds]) :  Time step of STOMATE and other slow processes 	{OK_STOMATE}
-DT_SLOW =  86400. 
-
 # SECHIBA_VEGMAX ([-]) :  Maximum vegetation distribution within the mesh (0-dim mode) 	{IMPOSE_VEG}
 SECHIBA_VEGMAX =  0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0 
@@ -1246,4 +1471,7 @@
 CLAY_FRACTION =  0.2 
 
+# SAND_FRACTION ([-] ) :  Fraction of the clay fraction (0-dim mode) 	{IMPOSE_VEG and IMPOSE_SOIL}
+SAND_FRACTION =  0.4 
+
 # REINF_SLOPE ([-]) :  Slope coef for reinfiltration  	{IMPOSE_VEG}
 REINF_SLOPE =  0.1 
@@ -1255,7 +1483,4 @@
 GET_SLOPE =  n 
 
-# LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(LAI_MAP)}
-LAI_FILE =  lai2D.nc 
-
 # LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAI_MAP}
 LAI_FILE =  lai2D.nc 
@@ -1264,18 +1489,6 @@
 RENORM_LAI =  n 
 
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAND_USE}
+# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{}
 VEGETATION_FILE =  PFTmap.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
 
 # SOILCLASS_FILE ([FILE]) :  Name of file from which soil types are read 	{NOT(IMPOSE_VEG)}
@@ -1288,107 +1501,101 @@
 TOPOGRAPHY_FILE =  cartepente2d_15min.nc 
 
+# WOODHARVEST_FILE ([FILE]) :  Name of file from which the wood harvest will be read 	{DO_WOOD_HARVEST}
+WOODHARVEST_FILE =  woodharvest.nc 
+
 # SOILALB_FILE ([FILE]) :  Name of file from which the bare soil albedo 	{NOT(IMPOSE_AZE)}
 SOILALB_FILE =  soils_param.nc 
 
+# ALB_BG_FILE ([FILE]) :  Name of file from which the background albedo is read  	{ALB_BG_MODIS}
+ALB_BG_FILE =  alb_bg.nc 
+
 # CDRAG_FROM_GCM ([FLAG]) :  Keep cdrag coefficient from gcm. 	{OK_SECHIBA}
 CDRAG_FROM_GCM =  y 
 
-# DIFFUCO_LEAFCI ([ppm]) :  Initial leaf CO2 level if not found in restart 	{OK_SECHIBA}
-DIFFUCO_LEAFCI =  233. 
-
-# ALLOW_WEATHERGEN ([FLAG]) :  Allow weather generator to create data 	{}
-ALLOW_WEATHERGEN =  n 
-
-# FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
-FORCING_FILE =  forcing_file.nc 
-
-# HYDROL_OK_HDIFF ([FLAG]) :  do horizontal diffusion? 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)  }
-HYDROL_OK_HDIFF =  n 
-
-# HYDROL_SNOW ([kg/m^2]) :  Initial snow mass if not found in restart 	{OK_SECHIBA}
-HYDROL_SNOW =  0.0 
-
-# HYDROL_SNOWAGE ([days]) :  Initial snow age if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOWAGE =  0.0 
-
-# HYDROL_SNOW_NOBIO ([m]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO =  0.0 
-
-# HYDROL_SNOW_NOBIO_AGE ([days]) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO_AGE =  0.0 
-
-# HYDROL_HUMR ([-]) :  Initial soil moisture stress if not found in restart 	{OK_SECHIBA }
-HYDROL_HUMR =  1.0 
-
-# HYDROL_BQSB ([kg/m^2]) :  Initial restart deep soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_BQSB =  999999.  
-
-# HYDROL_GQSB ([kg/m^2]) :  Initial upper soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_GQSB =  0.0 
-
-# HYDROL_DSG ([m]) :  Initial upper reservoir depth if not found in restart 	{OK_SECHIBA }
-HYDROL_DSG =  0.0 
-
-# HYDROL_QSV ([kg/m^2]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA }
-HYDROL_QSV =  0.0 
-
-# HYDROL_DSP ([m]) :  Initial dry soil above upper reservoir if not found in restart 	{OK_SECHIBA }
-HYDROL_DSP =  999999. 
-
-# HYDROL_TAU_HDIFF ([seconds]) :  time scale (s) for horizontal diffusion of water 	{HYDROL_OK_HDIFF}
-HYDROL_TAU_HDIFF =  86400. 
-
-# CHECK_CWRR ([FLAG]) :  Should we check detailed CWRR water balance ? 	{HYDROL_CWRR}
-CHECK_CWRR =  n 
-
-# DO_PONDS ([FLAG]) :  Should we include ponds  	{HYDROL_CWRR}
+# N_FERTIL_FILE (- ) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# N_FERTIL_FILE (-) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# ENERBIL_TSURF (Kelvin [K]) :  Initial temperature if not found in restart 	{OK_SECHIBA}
+ENERBIL_TSURF =  280. 
+
+# ENERBIL_EVAPOT () :  Initial Soil Potential Evaporation 	{OK_SECHIBA       }
+ENERBIL_EVAPOT =  0.0 
+
+# BEDROCK_FLAG ([FLAG]) :  Flag to consider bedrock at deeper layers. 	{}
+BEDROCK_FLAG =  0 
+
+# THERMOSOIL_TPRO (Kelvin [K]) :  Initial soil temperature profile if not found in restart 	{OK_SECHIBA}
+THERMOSOIL_TPRO =  280. 
+
+# SOIL_REFTEMP_FILE ([FILE]) :  File with climatological soil temperature 	{READ_REFTEMP}
+SOIL_REFTEMP_FILE =  reftemp.nc 
+
+# DO_PONDS ([FLAG]) :  Should we include ponds  	{}
 DO_PONDS =  n 
 
-# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{HYDROL_CWRR}
+# FROZ_FRAC_CORR  ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+FROZ_FRAC_CORR  =  1.0 
+
+# MAX_FROZ_HYDRO ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+MAX_FROZ_HYDRO =  1.0 
+
+# SMTOT_CORR ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+SMTOT_CORR =  2.0 
+
+# DO_RSOIL ([FLAG]) :  Should we reduce soil evaporation with a soil resistance 	{}
+DO_RSOIL =  n 
+
+# OK_DYNROOT ([FLAG]) :  Calculate dynamic root profile to optimize soil moisture usage   	{}
+OK_DYNROOT =  n 
+
+# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{}
 CWRR_N_VANGENUCHTEN =  1.89, 1.56, 1.31 
 
-# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{HYDROL_CWRR}
+# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{}
 CWRR_A_VANGENUCHTEN =  0.0075, 0.0036, 0.0019 
 
-# VWC_RESIDUAL ([mm]  ) :  Residual soil water content 	{HYDROL_CWRR}
+# VWC_RESIDUAL ([m3/m3]  ) :  Residual soil water content 	{}
 VWC_RESIDUAL =  0.065, 0.078, 0.095 
 
-# VWC_SAT ([-]  ) :  Saturated soil water content 	{HYDROL_CWRR}
+# VWC_SAT ([m3/m3]  ) :  Saturated soil water content 	{}
 VWC_SAT =  0.41, 0.43, 0.41 
 
-# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{HYDROL_CWRR }
+# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{}
 CWRR_KS  =  1060.8, 249.6, 62.4 
 
-# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{HYDROL_CWRR}
+# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{}
 WETNESS_TRANSPIR_MAX =  0.5, 0.5, 0.5 
 
-# DRAINAGE_FACTOR_F ([-]   ) :  Max value of the permeability coeff at the bottom of the soil  	{HYDROL_CWRR}
-DRAINAGE_FACTOR_F =  1.0, 1.0, 1.0  
-
-# VWC_FC  ([-]   ) :  Volumetric water content field capacity 	{HYDROL_CWRR}
+# VWC_FC  ([m3/m3]   ) :  Volumetric water content field capacity 	{}
 VWC_FC  =  0.32, 0.32, 0.32 
 
-# VWC_WP ([-]   ) :  Volumetric water content Wilting pt 	{HYDROL_CWRR}
+# VWC_WP ([m3/m3]   ) :  Volumetric water content Wilting pt 	{}
 VWC_WP =  0.10, 0.10, 0.10  
 
-# VWC_MIN_FOR_WET_ALB ([-]  ) :  Vol. wat. cont. above which albedo is cst 	{HYDROL_CWRR}
+# VWC_MIN_FOR_WET_ALB ([m3/m3]  ) :  Vol. wat. cont. above which albedo is cst 	{}
 VWC_MIN_FOR_WET_ALB =  0.25, 0.25, 0.25 
 
-# VWC_MAX_FOR_DRY_ALB ([-]   ) :  Vol. wat. cont. below which albedo is cst 	{HYDROL_CWRR}
+# VWC_MAX_FOR_DRY_ALB ([m3/m3]   ) :  Vol. wat. cont. below which albedo is cst 	{}
 VWC_MAX_FOR_DRY_ALB =  0.1, 0.1, 0.1 
 
-# HYDROL_MOISTURE_CONTENT () :  Soil moisture on each soil tile and levels 	{HYDROL_CWRR       }
+# HYDROL_MOISTURE_CONTENT ([m3/m3]) :  Soil moisture on each soil tile and levels 	{}
 HYDROL_MOISTURE_CONTENT =  0.3 
 
-# US_INIT () :  US_NVM_NSTM_NSLM 	{HYDROL_CWRR       }
+# US_INIT ([-]) :  US_NVM_NSTM_NSLM 	{}
 US_INIT =  0.0 
 
-# FREE_DRAIN_COEF () :  Coefficient for free drainage at bottom 	{HYDROL_CWRR       }
-FREE_DRAIN_COEF =  1.0, 1.0, 1.0 
-
-# WATER_TO_INFILT () :  Water to be infiltrated on top of the soil 	{HYDROL_CWRR    }
+# ZWT_FORCE ([m]) :  Prescribed water depth, dimension nstm 	{}
+ZWT_FORCE =  -9999. -9999. -9999. 
+
+# FREE_DRAIN_COEF ([-]) :  Coefficient for free drainage at bottom, dimension nstm 	{}
+FREE_DRAIN_COEF =  1.0 1.0 1.0 
+
+# WATER_TO_INFILT ([mm]) :  Water to be infiltrated on top of the soil 	{}
 WATER_TO_INFILT =  0.0 
 
-# EVAPNU_SOIL () :  Bare soil evap on each soil if not found in restart 	{HYDROL_CWRR  }
+# EVAPNU_SOIL ([mm]) :  Bare soil evap on each soil if not found in restart 	{}
 EVAPNU_SOIL =  0.0 
 
@@ -1396,39 +1603,39 @@
 HYDROL_SNOW =  0.0 
 
-# HYDROL_SNOWAGE () :  Initial snow age if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOWAGE (***) :  Initial snow age if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOWAGE =  0.0 
 
-# HYDROL_SNOW_NOBIO () :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO ([mm]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO =  0.0 
 
-# HYDROL_SNOW_NOBIO_AGE () :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO_AGE (***) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO_AGE =  0.0 
 
-# HYDROL_QSV () :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
+# HYDROL_QSV ([mm]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
 HYDROL_QSV =  0.0 
 
-# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_N0  =  0.95 
-
-# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_POWER =  0.34 
-
-# CWRR_AKS_A0  ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_A0  =  0.00012 
-
-# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_POWER =  0.53 
-
-# KFACT_DECAY_RATE ([-]) :  Factor for Ks decay with depth 	{HYDROL_CWRR }
+# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_N0  =  0.0 
+
+# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_POWER =  0.0 
+
+# CWRR_AKS_A0  ([1/mm]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_A0  =  0.0 
+
+# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_POWER =  0.0 
+
+# KFACT_DECAY_RATE ([1/m]) :  Factor for Ks decay with depth 	{}
 KFACT_DECAY_RATE =  2.0 
 
-# KFACT_STARTING_DEPTH ([-]) :  Depth for compacted value of Ks  	{HYDROL_CWRR }
+# KFACT_STARTING_DEPTH ([m]) :  Depth for compacted value of Ks  	{}
 KFACT_STARTING_DEPTH =  0.3 
 
-# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{HYDROL_CWRR }
+# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{}
 KFACT_MAX =  10.0 
 
-# ROUTING_TIMESTEP ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
-ROUTING_TIMESTEP =  86400. 
+# DT_ROUTING  ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
+DT_ROUTING  =  86400. 
 
 # ROUTING_RIVERS ([-]) :  Number of rivers  	{RIVER_ROUTING}
@@ -1445,11 +1652,11 @@
 
 # SLOW_TCST ([days]) :  Time constant for the slow reservoir  	{RIVER_ROUTING }
-SLOW_TCST =  n 
+SLOW_TCST =  25.0  
 
 # FAST_TCST ([days]) :  Time constant for the fast reservoir  	{RIVER_ROUTING }
-FAST_TCST =  fast_tcst_cwrr or fast_tcst_chois depending on flag HYDROL_CWRR 
+FAST_TCST =  3.0  
 
 # STREAM_TCST ([days]) :  Time constant for the stream reservoir  	{RIVER_ROUTING}
-STREAM_TCST =  stream_tcst_cwrr or stream_tcst_chois depending on flag HYDROL_CWRR 
+STREAM_TCST =  0.24 
 
 # FLOOD_TCST ([days]) :  Time constant for the flood reservoir  	{RIVER_ROUTING}
@@ -1471,9 +1678,12 @@
 POND_CRI =  2000. 
 
+# MAX_LAKE_RESERVOIR ([kg/m2(routing area)] ) :  Maximum limit of water in lake_reservoir 	{RIVER_ROUTING}
+MAX_LAKE_RESERVOIR =  7000 
+
 # RIVER_DESC ([FLAG]) :  Writes out a description of the rivers 	{RIVER_ROUTING}
 RIVER_DESC =  n 
 
 # RIVER_DESC_FILE ([FILE]) :  Filename in which we write the description of the rivers. If suffix is ".nc" a netCDF file is created 	{RIVER_DESC}
-RIVER_DESC_FILE =  river_desc.txt 
+RIVER_DESC_FILE =  river_desc.nc 
 
 # ROUTING_FILE ([FILE]) :  Name of file which contains the routing information 	{RIVER_ROUTING}
@@ -1504,11 +1714,8 @@
 FORCESOIL_NB_YEAR =  1 
 
-# BAVARD ([-]) :  level of online diagnostics in STOMATE (0-4) 	{OK_STOMATE}
-BAVARD =  1 
-
-# REFTEMP_FILE ([FILE]) :  Name of file from which the reference temperature is read 	{OK_STOMATE}
-REFTEMP_FILE =  reftemp.nc 
-
 # XIOS_ORCHIDEE_OK ([FLAG]) :  Use XIOS for writing diagnostics file 	{}
-XIOS_ORCHIDEE_OK =  n 
-
+XIOS_ORCHIDEE_OK =  y  
+
+# XIOS_INTERPOLATION ([FLAG]) :  Actiave reading and intrepolation using XIOS 	{XIOS_ORCHIDEE_OK}
+XIOS_INTERPOLATION =  n 
+
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC/PARAM/orchidee.default
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC/PARAM/orchidee.default	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC/PARAM/orchidee.default	(revision 5633)
@@ -6,5 +6,5 @@
 #
 #*******************************************************************************************
-#                    Namelist for ORCHIDEE (trunk revision 2135) 
+#                    Namelist for ORCHIDEE 
 #*******************************************************************************************
 #
@@ -18,12 +18,15 @@
 #*******************************************************************************************
 
-# DEBUG_INFO ([FLAG] ) :  Flag for debug information 	{[-]}
-DEBUG_INFO =  n 
+# LWDOWN_CONS ([FLAG]) :  Conserve longwave downwelling radiation in the forcing 	{}
+LWDOWN_CONS =  n 
+
+# SWDOWN_CONS ([FLAG]) :  Conserve shortwave downwelling radiation in the forcing 	{}
+SWDOWN_CONS =  LWDOWN_CONS 
 
 # FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
 FORCING_FILE =  forcing_file.nc 
 
-# SPLIT_DT ([-]) :  splits the timestep imposed by the forcing 	{NOT(WEATHERGEN)}
-SPLIT_DT =  12 
+# DT_SECHIBA ([seconds]) :  Time-step of the SECHIBA component 	{NOT(WEATHERGEN)}
+DT_SECHIBA =  1800. 
 
 # RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions 	{[-]}
@@ -40,5 +43,5 @@
 
 # TIME_LENGTH ([seconds, days, months, years]) :  Length of the integration in time. 	{[-]}
-TIME_LENGTH =  DEF 
+TIME_LENGTH =  Full length of the forcing file  
 
 # RELAXATION ([FLAG]) :  method of forcing 	{[-]}
@@ -48,17 +51,8 @@
 RELAX_A =  1.0 
 
-# NO_INTER  ([FLAG]) :  No interpolation IF split is larger than 1 	{[-]}
-NO_INTER  =  y 
-
-# INTER_LIN ([FLAG]) :  Interpolation IF split is larger than 1 	{[-]}
-INTER_LIN =  n 
-
 # SPRED_PREC ([-]) :  Spread the precipitation. 	{[-]}
-SPRED_PREC =  1 
-
-# NETRAD_CONS ([FLAG]) :  Conserve net radiation in the forcing 	{INTER_LIN}
-NETRAD_CONS =  y 
-
-# ATM_CO2 ([ppm]) :  Value for atm CO2 	{[-]}
+SPRED_PREC =  Half of the forcing time step or uniform, depending on dt_force and dt_sechiba 
+
+# ATM_CO2 ([ppm]) :  Value to precribe atmosoheric CO2 	{[FORCE_CO2_VEG=y or Offline mode]}
 ATM_CO2 =  350. 
 
@@ -87,4 +81,13 @@
 ZONAL_RES =  2. 
 
+# HEIGHT_LEV1 ([m]) :  Height at which T and Q are given 	{offline mode}
+HEIGHT_LEV1 =  2.0 
+
+# HEIGHT_LEVW ([m]) :  Height at which the wind is given 	{offline mode}
+HEIGHT_LEVW =  10.0 
+
+# NBUFF (-) :  Number of time steps of data to buffer between each reading of the forcing file 	{OFF_LINE}
+NBUFF =  1 
+
 # IPPREC ([-] ) :  Use prescribed values 	{ALLOW_WEATHERGEN}
 IPPREC =  0 
@@ -102,6 +105,6 @@
 DUMP_WEATHER_GATHERED =  y 
 
-# HEIGHT_LEV1 ([m]) :   	{DUMP_WEATHER}
-HEIGHT_LEV1 =  10. 
+# HEIGHT_LEV1_DUMP ([m]) :   	{DUMP_WEATHER}
+HEIGHT_LEV1_DUMP =  10. 
 
 #*******************************************************************************************
@@ -109,30 +112,9 @@
 #*******************************************************************************************
 
-# LONGPRINT ([FLAG]) :  ORCHIDEE will print more messages 	{OK_SECHIBA}
-LONGPRINT =  n 
-
-# CHECKTIME ([FLAG]) :  ORCHIDEE will print messages on time 	{OK_SECHIBA}
-CHECKTIME =  n 
-
 # SOILTYPE_CLASSIF ([-]) :  Type of classification used for the map of soil types  	{!IMPOSE_VEG}
 SOILTYPE_CLASSIF =  zobler 
 
-# ORCHIDEE_WATCHOUT ([FLAG]) :  ORCHIDEE will write out its forcing to a file 	{}
-ORCHIDEE_WATCHOUT =  n 
-
-# DT_WATCHOUT ([seconds]) :  ORCHIDEE will write out with this frequency 	{ORCHIDEE_WATCHOUT}
-DT_WATCHOUT =  dt 
-
-# WATCHOUT_FILE ([FILE]) :  Filenane for the ORCHIDEE forcing file 	{ORCHIDEE_WATCHOUT}
-WATCHOUT_FILE =  orchidee_watchout.nc 
-
 # RIVER_ROUTING ([FLAG]) :  Decides if we route the water or not 	{OK_SECHIBA}
-RIVER_ROUTING =  n 
-
-# HYDROL_CWRR ([FLAG]) :  Allows to switch on the multilayer hydrology of CWRR 	{OK_SECHIBA}
-HYDROL_CWRR =  n 
-
-# HYDROL_SOIL_DEPTH ([m]) :  Total depth of soil reservoir 	{OK_SECHIBA }
-HYDROL_SOIL_DEPTH =  4./ 2. (if HYDROL_CWRR) 
+RIVER_ROUTING =  y 
 
 # DO_IRRIGATION ([FLAG]) :  Should we compute an irrigation flux  	{RIVER_ROUTING }
@@ -142,23 +124,20 @@
 DO_FLOODPLAINS =  n 
 
-# CHECK_WATERBAL ([FLAG]  ) :  Should we check the global water balance  	{OK_SECHIBA}
-CHECK_WATERBAL =  n 
-
-# STOMATE_OK_CO2 ([FLAG]) :  Activate CO2? 	{OK_SECHIBA }
-STOMATE_OK_CO2 =  n 
-
-# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA and OK_CO2}
-STOMATE_OK_STOMATE =  n 
+# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA}
+STOMATE_OK_STOMATE =  y 
+
+# DO_WOOD_HARVEST ([FLAG]) :  Activate Wood Harvest ? 	{OK_STOMATE}
+DO_WOOD_HARVEST =  y 
 
 # STOMATE_OK_DGVM ([FLAG]) :  Activate DGVM? 	{OK_STOMATE}
 STOMATE_OK_DGVM =  n 
 
-# DIFFUCO_OK_INCA ([FLAG]) :  Activate DIFFUCO_INCA? 	{OK_SECHIBA}
-DIFFUCO_OK_INCA =  n 
-
-# LEAFAGE_OK_INCA ([FLAG]) :  Activate LEAFAGE? 	{DIFFUCO_OK_INCA}
-LEAFAGE_OK_INCA =  n 
-
-# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{DIFFUCO_OK_INCA }
+# CHEMISTRY_BVOC ([FLAG]) :  Activate calculations for BVOC 	{OK_SECHIBA}
+CHEMISTRY_BVOC =  n 
+
+# CHEMISTRY_LEAFAGE ([FLAG]) :  Activate LEAFAGE? 	{CHEMISTRY_BVOC}
+CHEMISTRY_LEAFAGE =  n 
+
+# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{CHEMISTRY_BVOC }
 CANOPY_EXTINCTION  =  n 
 
@@ -166,15 +145,12 @@
 CANOPY_MULTILAYER =  n 
 
-# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{DIFFUCO_OK_INCA }
+# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{CHEMISTRY_BVOC }
 NOx_RAIN_PULSE =  n 
 
-# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{DIFFUCO_OK_INCA }
+# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{CHEMISTRY_BVOC }
 NOx_BBG_FERTIL =  n 
 
-# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{DIFFUCO_OK_INCA }
+# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{CHEMISTRY_BVOC }
 NOx_FERTILIZERS_USE =  n 
-
-# STOMATE_WATCHOUT ([FLAG]) :  STOMATE does minimum service 	{OK_SECHIBA }
-STOMATE_WATCHOUT =  n 
 
 # NVM ([-]) :  number of PFTs   	{OK_SECHIBA or OK_STOMATE}
@@ -184,4 +160,67 @@
 IMPOSE_PARAM =  y 
 
+# DEPTH_MAX_T (m) :  Maximum depth of the soil thermodynamics 	{}
+DEPTH_MAX_T =  90.0 
+
+# DEPTH_MAX_H (m) :  Maximum depth of soil moisture 	{}
+DEPTH_MAX_H =  2.0 
+
+# DEPTH_TOPTHICK (m) :  Thickness of upper most Layer  	{}
+DEPTH_TOPTHICK =  9.77517107e-04 
+
+# DEPTH_CSTTHICK (m) :  Depth at which constant layer thickness start 	{}
+DEPTH_CSTTHICK =  DEPTH_MAX_H  
+
+# REFINEBOTTOM (-) :  Depth at which the hydrology layers will be refined towards the bottom. 	{}
+REFINEBOTTOM =  .FALSE. 
+
+# DEPTH_GEOM (m) :  Depth at which we resume geometrical increases for temperature 	{}
+DEPTH_GEOM =  DEPTH_MAX_H  
+
+# RATIO_GEOM_BELOW (-) :  Ratio of the geometrical series defining the thickness below DEPTH_GEOM 	{}
+RATIO_GEOM_BELOW =  2 
+
+# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
+ALMA_OUTPUT =  n 
+
+# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
+OUTPUT_FILE =  sechiba_history.nc 
+
+# WRITE_STEP ([seconds]) :  Frequency in seconds for sechiba_history.nc file with IOIPSL 	{OK_SECHIBA, NOT XIOS_ORCHIDEE_OK}
+WRITE_STEP =  86400. 
+
+# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
+SECHIBA_HISTLEVEL =  5 
+
+# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
+SECHIBA_HISTFILE2 =  n 
+
+# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
+WRITE_STEP2 =  1800.0 
+
+# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
+SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
+
+# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
+SECHIBA_HISTLEVEL2 =  1 
+
+# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_OUTPUT_FILE =  stomate_history.nc 
+
+# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
+STOMATE_HIST_DT =  10. 
+
+# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
+
+# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
+STOMATE_IPCC_HIST_DT =  0. 
+
+# OK_HISTSYNC ([FLAG]) :  Syncronize and write IOIPSL output files at each time step 	{}
+OK_HISTSYNC =  FALSE 
+
+# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
+STOMATE_HISTLEVEL =  10 
+
 # SECHIBA_restart_in ([FILE]) :  Name of restart to READ for initial conditions 	{OK_SECHIBA }
 SECHIBA_restart_in =  NONE 
@@ -190,51 +229,15 @@
 SECHIBA_rest_out =  sechiba_rest_out.nc 
 
-# SECHIBA_reset_time ([FLAG]) :  Override the time from the restart files for SECHIBA and STOMATE 	{OK_SECHIBA}
-SECHIBA_reset_time =  y 
-
-# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
+# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE}
 STOMATE_RESTART_FILEIN =  NONE 
 
-# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
-STOMATE_RESTART_FILEOUT =  stomate_restart.nc 
-
-# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
-ALMA_OUTPUT =  n 
-
-# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
-OUTPUT_FILE =  sechiba_history.nc 
-
-# WRITE_STEP ([seconds]) :  Frequency in seconds at which to WRITE output 	{OK_SECHIBA}
-WRITE_STEP =  86400. 
-
-# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
-SECHIBA_HISTLEVEL =  5 
-
-# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
-SECHIBA_HISTFILE2 =  n 
-
-# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
-WRITE_STEP2 =  1800.0 
-
-# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
-SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
-
-# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
-SECHIBA_HISTLEVEL2 =  1 
-
-# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_OUTPUT_FILE =  stomate_history.nc 
-
-# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
-STOMATE_HIST_DT =  10. 
-
-# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
-
-# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
-STOMATE_IPCC_HIST_DT =  0. 
-
-# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
-STOMATE_HISTLEVEL =  10 
+# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE}
+STOMATE_RESTART_FILEOUT =  stomate_rest_out.nc 
+
+# FORCE_CO2_VEG ([FLAG]) :  Flag to force the value of atmospheric CO2 for vegetation. 	{Only in coupled mode}
+FORCE_CO2_VEG =  FALSE 
+
+# TAU_OUTFLOW ([days]) :  Number of days over which the coastal- and riverflow will be distributed 	{Only in coupled mode}
+TAU_OUTFLOW =  0 
 
 # ECCENTRICITY ([-]) :  Use prescribed values 	{ALLOW_WEATHERGEN}
@@ -247,7 +250,4 @@
 OBLIQUITY =  23.446 
 
-# OK_THROUGHFALL_PFT ([FLAG]) :  Activate use of PERCENT_THROUGHFALL_PFT 	{HYDROL_CWRR}
-OK_THROUGHFALL_PFT =  FALSE 
-
 # PFT_TO_MTC ([-]) :  correspondance array linking a PFT to MTC 	{OK_SECHIBA or OK_STOMATE}
 PFT_TO_MTC =  1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 
@@ -271,4 +271,10 @@
 SLOWPROC_HEIGHT =  0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1., 1. 
 
+# Z0_OVER_HEIGHT ([-] ) :  factor to calculate roughness height from height of canopy  	{OK_SECHIBA}
+Z0_OVER_HEIGHT =  0., 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625 
+
+# RATIO_Z0M_Z0H ([-]) :  Ratio between z0m and z0h 	{OK_SECHIBA}
+RATIO_Z0M_Z0H =  1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0  
+
 # TYPE_OF_LAI ([-]) :  Type of behaviour of the LAI evolution algorithm  	{OK_SECHIBA}
 TYPE_OF_LAI =  inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter 
@@ -283,26 +289,29 @@
 VCMAX_FIX =  0., 40., 50., 30., 35., 40.,30., 40., 35., 60., 60., 70., 70. 
 
-# DOWNREGULATION_CO2_COEFF ([-]) :  coefficient for CO2 downregulation (unitless) 	{OK_CO2}
-DOWNREGULATION_CO2_COEFF =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
-
-# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{OK_CO2}
+# DOWNREG_CO2 ([-]) :  coefficient for CO2 downregulation (unitless) 	{}
+DOWNREG_CO2 =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
+
+# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{}
 E_KmC =  -9999.,  79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430. 
 
-# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{OK_CO2}
+# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{}
 E_KmO =  -9999., 36380.,  36380.,  36380.,  36380.,  36380., 36380., 36380., 36380., 36380., 36380., 36380., 36380. 
 
-# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{OK_CO2}
+# E_Sco ([J mol-1]) :  Energy of activation for Sco 	{}
+E_Sco =  -9999., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460. 
+
+# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{}
 E_gamma_star =  -9999., 37830.,  37830.,  37830.,  37830.,  37830., 37830., 37830., 37830., 37830., 37830., 37830., 37830. 
 
-# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{OK_CO2}
+# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{}
 E_Vcmax =  -9999., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 67300., 71513., 67300. 
 
-# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{OK_CO2}
+# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{}
 E_Jmax =  -9999., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 77900., 49884., 77900.  
 
-# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 aSV =  -9999., 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 641.64, 668.39, 641.64  
 
-# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 bSV =  -9999., -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, 0., -1.07, 0.  
 
@@ -313,21 +322,30 @@
 TPHOTO_MAX =  -9999., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55. 
 
-# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 aSJ =  -9999., 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 630., 659.70, 630.  
 
-# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 bSJ =  -9999., -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, 0., -0.75, 0.  
 
-# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{OK_CO2}
+# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{}
 D_Vcmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{OK_CO2}
+# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{}
 D_Jmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{OK_CO2}
+# E_gm  ([J mol-1] ) :  Energy of activation for gm  	{ }
+E_gm  =  -9999., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., -9999., 49600., -9999.  
+
+# S_gm  ([J K-1 mol-1] ) :  Entropy term for gm  	{ }
+S_gm  =  -9999., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., -9999., 1400., -9999.  
+
+# D_gm  ([J mol-1] ) :  Energy of deactivation for gm  	{ }
+D_gm  =  -9999., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., -9999., 437400., -9999.  
+
+# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{}
 E_Rd =  -9999., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390. 
 
 # VCMAX25 ([micromol/m^2/s]) :  Maximum rate of Rubisco activity-limited carboxylation at 25Â°C 	{OK_STOMATE}
-VCMAX25 =  -9999., 65., 65., 35., 45., 55., 35., 45., 35., 70., 70., 70., 70. 
+VCMAX25 =  -9999., 45.0, 45.0, 35.0, 40.0, 50.0, 45.0, 35.0, 35.0, 50.0, 50.0, 60.0, 60.0 
 
 # ARJV ([mu mol e- (mu mol CO2)-1]) :  a coefficient of the linear regression (a+bT) defining the Jmax25/Vcmax25 ratio  	{OK_STOMATE}
@@ -337,54 +355,72 @@
 BRJV =  -9999., -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, 0., -0.035, 0. 
 
-# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{OK_CO2}
+# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{}
 KmC25 =  -9999., 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 650., 404.9, 650. 
 
-# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{OK_CO2}
+# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{}
 KmO25 =  -9999., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 450000., 278400., 450000. 
 
-# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{OK_CO2}
+# Sco25 ([bar bar-1]) :  Relative CO2 /O2 specificity factor for Rubisco at 25ÃÂ°C 	{}
+Sco25 =  -9999., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2590., 2800., 2590. 
+
+# gm25  ([mol m-2 s-1 bar-1] ) :  Mesophyll diffusion conductance at 25ÃÂÃÂ°C  	{ }
+gm25  =  -9999., 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, -9999., 0.4, -9999.  
+
+# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{}
 gamma_star25 =  -9999., 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75 
 
-# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
-a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85 
-
-# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
+# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
+a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.72, 0.85, 0.72 
+
+# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
 b1 =  -9999., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.20, 0.14, 0.20 
 
-# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{OK_CO2}
+# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{}
 g0 =  -9999., 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.01875, 0.00625, 0.01875  
 
-# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{OK_CO2}
+# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{}
 h_protons =  -9999., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4.  
 
-# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{OK_CO2}
+# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{}
 fpsir =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.4, -9999., 0.4  
 
-# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{OK_CO2}
+# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{}
 fQ =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 1., -9999., 1. 
 
-# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{OK_CO2}
+# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{}
 fpseudo =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{OK_CO2}
+# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{}
 kp =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.7, -9999., 0.7 
 
-# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{OK_CO2}
+# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{}
 alpha =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{OK_CO2}
+# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{}
 gbs =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.003, -9999., 0.003 
 
-# theta ([â]) :  Convexity factor for response of J to irradiance 	{OK_CO2}
+# theta ([â]) :  Convexity factor for response of J to irradiance 	{}
 theta =  -9999., 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7 
 
-# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{OK_CO2}
+# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{}
 alpha_LL =  -9999., 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372 
+
+# STRESS_VCMAX ([-]) :  Stress on vcmax 	{OK_SECHIBA or OK_STOMATE}
+STRESS_VCMAX =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GS ([-]) :  Stress on gs 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GS =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GM ([-]) :  Stress on gm 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GM =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
 
 # EXT_COEFF ([-]) :  extinction coefficient of the Monsi&Seaki relationship (1953) 	{OK_SECHIBA or OK_STOMATE}
 EXT_COEFF =  .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5 
 
+# EXT_COEFF_VEGETFRAC ([-]) :  extinction coefficient used for the calculation of the bare soil fraction  	{OK_SECHIBA or OK_STOMATE}
+EXT_COEFF_VEGETFRAC =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
 # HYDROL_HUMCSTE ([m]) :  Root profile 	{OK_SECHIBA}
-HYDROL_HUMCSTE =  humcste_cwrr or humcste_mct depending on flag HYDROL_CWRR 
+HYDROL_HUMCSTE =  humcste_ref2m or humcste_ref4m depending on zmaxh 
 
 # PREF_SOIL_VEG ([-]        ) :  The soil tile number for each vegetation 	{OK_SECHIBA or OK_STOMATE}
@@ -403,65 +439,128 @@
 WMAX_VEG =  150., 150., 150., 150., 150., 150., 150.,150., 150., 150., 150., 150., 150. 
 
-# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy 	{OK_SECHIBA OR HYDROL_CWRR}
-PERCENT_THROUGHFALL_PFT =  30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 
-
-# SNOWA_AGED ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow) 	{OK_SECHIBA}
-SNOWA_AGED =  0.35, 0., 0., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.18, 0.18, 0.18, 0.18 
-
-# SNOWA_DEC ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow 	{OK_SECHIBA}
-SNOWA_DEC =  0.45, 0.,  0., 0.06, 0.06, 0.11, 0.06, 0.11, 0.11, 0.52,0.52, 0.52, 0.52 
+# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy. Default value depend on run mode. 	{OK_SECHIBA}
+PERCENT_THROUGHFALL_PFT =  Case offline [0. 0. 0....] else [30. 30. 30.....] 
+
+# SNOWA_AGED_VIS ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), visible albedo 	{OK_SECHIBA}
+SNOWA_AGED_VIS =  0.74, 0.0, 0.0, 0.08, 0.24, 0.07, 0.18, 0.18, 0.33, 0.57, 0.57, 0.57, 0.57 
+
+# SNOWA_AGED_NIR ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), near infrared albedo 	{OK_SECHIBA}
+SNOWA_AGED_NIR =  0.50, 0.0, 0.0, 0.10, 0.37, 0.08, 0.16, 0.17, 0.27, 0.44, 0.44, 0.44, 0.44   
+
+# SNOWA_DEC_VIS ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, visible albedo 	{OK_SECHIBA}
+SNOWA_DEC_VIS =  0.21, 0.0, 0.0, 0.14, 0.08, 0.17, 0.05, 0.06, 0.09, 0.15, 0.15, 0.15, 0.15  
+
+# SNOWA_DEC_NIR ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, near infrared albedo 	{OK_SECHIBA}
+SNOWA_DEC_NIR =  0.13, 0.0, 0.0, 0.10, 0.10, 0.16, 0.04, 0.07, 0.08, 0.12, 0.12, 0.12, 0.12 
 
 # ALB_LEAF_VIS ([-]) :  leaf albedo of vegetation type, visible albedo 	{OK_SECHIBA}
-ALB_LEAF_VIS =  .00, .04, .06, .06, .06,.06, .06, .06, .06, .10, .10, .10, .10 
+ALB_LEAF_VIS =  0.00, 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.06, 0.06, 0.06, 0.06 
 
 # ALB_LEAF_NIR ([-]) :  leaf albedo of vegetation type, near infrared albedo 	{OK_SECHIBA}
-ALB_LEAF_NIR =  .00, .20, .22, .22, .22,.22, .22, .22, .22, .30, .30, .30, .30  
-
-# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{DIFFUCO_OK_INCA}
+ALB_LEAF_NIR =  0.00, 0.23, 0.18, 0.18, 0.20, 0.24, 0.15, 0.26, 0.20, 0.24, 0.27, 0.28, 0.26 
+
+# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{CHEMISTRY_BVOC}
 ISO_ACTIVITY =  0.5, 1.5, 1.5, 0.5 
 
-# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{DIFFUCO_OK_INCA}
+# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{CHEMISTRY_BVOC}
 METHANOL_ACTIVITY =  1., 1., 0.5, 0.5 
 
-# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 8., 8., 16., 24., 5., 5. 
-
-# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MONOTERPENE =  0., 0.8, 0.8, 2.4, 1.2, 0.8, 2.4, 2.4, 2.4, 0.8, 1.2, 0.2, 0.2 
-
-# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{DIFFUCO_OK_INCA }
+# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 18., 0.5, 12., 18., 5., 5. 
+
+# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MONOTERPENE =  0., 2.0, 2.0, 1.8, 1.4, 1.6, 1.8, 1.4, 1.8, 0.8, 0.8,  0.22, 0.22 
+
+# C_LDF_MONO  ([]) :  Monoterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_MONO  =  0.6 
+
+# C_LDF_SESQ  ([]) :  Sesquiterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_SESQ  =  0.5 
+
+# C_LDF_METH  ([]) :  Methanol fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_METH  =  0.8 
+
+# C_LDF_ACET  ([]) :  Acetone fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_ACET  =  0.2 
+
+# EM_FACTOR_APINENE  ([ugC/g/h] ) :  Alfa pinene  emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_APINENE  =  0., 1.35, 1.35, 0.85, 0.95, 0.75, 0.85, 0.60, 1.98, 0.30, 0.30, 0.09, 0.09 
+
+# EM_FACTOR_BPINENE ([ugC/g/h] ) :  Beta pinene  emission factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_BPINENE =  0., 0.30, 0.30, 0.35, 0.25, 0.20, 0.35, 0.12, 0.45, 0.16, 0.12, 0.05, 0.05 
+
+# EM_FACTOR_LIMONENE ([ugC/g/h] ) :  Limonene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_LIMONENE =  0., 0.25, 0.25, 0.20, 0.25, 0.14, 0.20, 0.135, 0.11, 0.19, 0.42, 0.03, 0.03 
+
+# EM_FACTOR_MYRCENE ([ugC/g/h] ) :  Myrcene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_MYRCENE =  0., 0.20, 0.20, 0.12, 0.11, 0.065, 0.12, 0.036, 0.075, 0.08,  0.085, 0.015, 0.015 
+
+# EM_FACTOR_SABINENE ([ugC/g/h] ) :  Sabinene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_SABINENE =  0., 0.20, 0.20, 0.12, 0.17, 0.70, 0.12, 0.50, 0.09, 0.085, 0.075, 0.02, 0.02 
+
+# EM_FACTOR_CAMPHENE  ([ugC/g/h] ) :  Camphene  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_CAMPHENE  =  0., 0.15, 0.15, 0.10, 0.10, 0.01, 0.10, 0.01, 0.07, 0.07, 0.08, 0.01, 0.01 
+
+# EM_FACTOR_3CARENE  ([ugC/g/h] ) :  3-Carene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_3CARENE  =  0., 0.13, 0.13, 0.42, 0.02, 0.055, 0.42,0.025, 0.125, 0.085, 0.085, 0.065, 0.065 
+
+# EM_FACTOR_TBOCIMENE ([ugC/g/h] ) :  T-beta-ocimene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_TBOCIMENE =  0., 0.25, 0.25, 0.13, 0.09, 0.26, 0.13, 0.20, 0.085, 0.18, 0.18, 0.01, 0.01 
+
+# EM_FACTOR_OTHERMONOT ([ugC/g/h] ) :  Other monoterpenes  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_OTHERMONOT =  0., 0.17, 0.17, 0.11, 0.11, 0.125, 0.11, 0.274, 0.01, 0.15, 0.155, 0.035, 0.035 
+
+# EM_FACTOR_SESQUITERP  ([ugC/g/h] ) :  Sesquiterpenes  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_SESQUITERP  =  0., 0.45, 0.45, 0.13, 0.3, 0.36, 0.15, 0.3, 0.25, 0.6, 0.6, 0.08, 0.08 
+
+# C_BETA_MONO  ([]) :  Monoterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_MONO  =  0.1 
+
+# C_BETA_SESQ  ([]) :  Sesquiterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_SESQ  =  0.17 
+
+# C_BETA_METH  ([]) :  Methanol temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_METH  =  0.08 
+
+# C_BETA_ACET  ([]) :  Acetone temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_ACET  =  0.1 
+
+# C_BETA_OXYVOC  ([]) :  Other oxygenated BVOC temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_OXYVOC  =  0.13 
+
+# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{CHEMISTRY_BVOC }
 EM_FACTOR_ORVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{DIFFUCO_OK_INCA}
+# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{CHEMISTRY_BVOC}
 EM_FACTOR_OVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MBO =  0., 0., 0., 20.0, 0., 0., 0., 0., 0., 0., 0., 0., 0. 
-
-# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_METHANOL =  0., 0.6, 0.6, 1.8, 0.9, 0.6, 1.8, 1.8, 1.8, 0.6, 0.9, 2., 2. 
-
-# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETONE =  0., 0.29, 0.29, 0.87, 0.43, 0.29, 0.87, 0.87, 0.87, 0.29, 0.43, 0.07, 0.07  
-
-# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{DIFFUCO_OK_INCA}
-EM_FACTOR_ACETAL =  0., 0.1, 0.1, 0.3, 0.15, 0.1, 0.3, 0.3, 0.3, 0.1, 0.15, 0.025, 0.025 
-
-# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_FORMAL =  0., 0.07, 0.07, 0.2, 0.1, 0.07, 0.2, 0.2, 0.2, 0.07, 0.1, 0.017, 0.017 
-
-# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETIC =  0., 0.002, 0.002, 0.006, 0.003, 0.002, 0.006, 0.006, 0.006, 0.002, 0.003, 0.0005, 0.0005 
-
-# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_FORMIC =  0., 0.01, 0.01, 0.03, 0.015, 0.01, 0.03, 0.03, 0.03, 0.01, 0.015, 0.0025, 0.0025  
-
-# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MBO =  0., 2.e-5, 2.e-5, 1.4, 2.e-5, 2.e-5, 0.14, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5 
+
+# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_METHANOL =  0., 0.8, 0.8, 1.8, 0.9, 1.9, 1.8, 1.8, 1.8, 0.7, 0.9, 2., 2. 
+
+# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETONE =  0., 0.25, 0.25, 0.3, 0.2, 0.33, 0.3, 0.25, 0.25, 0.2, 0.2, 0.08, 0.08 
+
+# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_ACETAL =  0., 0.2, 0.2, 0.2, 0.2, 0.25, 0.25, 0.16, 0.16, 0.12, 0.12, 0.035, 0.02 
+
+# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_FORMAL =  0., 0.04, 0.04, 0.08, 0.04, 0.04, 0.04, 0.04, 0.04, 0.025, 0.025, 0.013, 0.013 
+
+# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETIC =  0., 0.025, 0.025,0.025,0.022,0.08,0.025,0.022,0.013,0.012,0.012,0.008,0.008 
+
+# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_FORMIC =  0., 0.015, 0.015, 0.02, 0.02, 0.025, 0.025, 0.015, 0.015,0.010,0.010,0.008,0.008 
+
+# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_WET =  0., 2.6, 0.06, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.36, 0.36, 0.36, 0.36 
 
-# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_DRY =  0., 8.60, 0.40, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 2.65, 2.65, 2.65, 2.65 
 
-# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{DIFFUCO_OK_INCA }
+# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{CHEMISTRY_BVOC }
 LARCH =  0., 0.015, 0.015, 0.003, 0.005, 0.005, 0.003, 0.005, 0.003, 0.005, 0.005, 0.008, 0.008 
 
@@ -469,9 +568,18 @@
 SLA =  1.5E-2, 1.53E-2, 2.6E-2, 9.26E-3, 2E-2, 2.6E-2, 9.26E-3, 2.6E-2, 1.9E-2, 2.6E-2, 2.6E-2, 2.6E-2, 2.6E-2 
 
+# AVAILABILITY_FACT  ([-]   ) :  Calculate dynamic mortality in lpj_gap, pft dependent parameter 	{OK_STOMATE }
+AVAILABILITY_FACT  =  -9999., 0.14, 0.14, 0.10, 0.10, 0.10, 0.05, 0.05, 0.05, -9999., -9999., -9999., -9999.  
+
+# R0  ([-]    ) :  Standard root allocation  	{OK_STOMATE }
+R0  =  -9999., .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
+
 # S0  ([-]    ) :  Standard sapwood allocation  	{OK_STOMATE }
 S0  =  -9999., .25, .25, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
 
+# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE}
+FRAC_GROWTHRESP =  -9999., 0.35, 0.35, 0.28, 0.28, 0.28, 0.35, 0.35, 0.35, 0.28, 0.28, 0.28, 0.28 
+
 # MAINT_RESP_SLOPE_C ([-]) :  slope of maintenance respiration coefficient (1/K), constant c of aT^2+bT+c , tabulated 	{OK_STOMATE}
-MAINT_RESP_SLOPE_C =  -9999., .20, .20, .16, .16, .16, .16, .16, .16, .16, .12, .16, .12  
+MAINT_RESP_SLOPE_C =  -9999., 0.12, 0.12, 0.16, 0.16, 0.16, 0.25, 0.25, 0.25, 0.16, 0.12, 0.16, 0.12 
 
 # MAINT_RESP_SLOPE_B ([-]) :  slope of maintenance respiration coefficient (1/K), constant b of aT^2+bT+c , tabulated 	{OK_STOMATE}
@@ -520,6 +628,9 @@
 COEFF_LCCHANGE_100 =  -9999., 0., 0., 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0., 0.104, 0. 
 
+# LAI_MAX_TO_HAPPY ([-]) :  threshold of LAI below which plant uses carbohydrate reserves 	{OK_STOMATE}
+LAI_MAX_TO_HAPPY =  -9999., .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5  
+
 # LAI_MAX ([m^2/m^2]) :  maximum LAI, PFT-specific 	{OK_STOMATE}
-LAI_MAX =  -9999., 7., 7., 5., 5., 5., 4.5, 4.5, 3.0, 2.5, 2.5, 5.,5.  
+LAI_MAX =  -9999., 7.0, 5.0, 5.0, 4.0, 5.0, 3.5, 4.0, 3.0, 2.5, 2.0, 5.0, 5.0 
 
 # PHENO_TYPE ([-]) :  type of phenology, 0 	{OK_STOMATE}
@@ -535,4 +646,7 @@
 PHENO_GDD_CRIT_A =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.03125,  0., 0., 0. 
 
+# PHENO_MOIGDD_T_CRIT ([C]) :  Average temperature threashold for C4 grass used in pheno_moigdd 	{OK_STOMATE}
+PHENO_MOIGDD_T_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 22.0, -9999., -9999. 
+
 # NGD_CRIT ([days]) :  critical ngd, tabulated. Threshold -5 degrees 	{OK_STOMATE}
 NGD_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0., -9999., -9999., -9999., -9999., -9999. 
@@ -550,4 +664,7 @@
 TAU_SAP =  -9999., 730., 730., 730., 730., 730., 730., 730., 730., -9999., -9999., -9999., -9999. 
 
+# TAU_LEAFINIT ([days]) :  time to attain the initial foliage using the carbohydrate reserve 	{OK_STOMATE}
+TAU_LEAFINIT =  -9999., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10. 
+
 # TAU_FRUIT ([days]) :  fruit lifetime 	{OK_STOMATE}
 TAU_FRUIT =  -9999., 90., 90., 90., 90., 90., 90., 90., 90., -9999., -9999., -9999., -9999. 
@@ -604,4 +721,7 @@
 GDD_SENESCENCE =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 950., 4000. 
 
+# ALWAYS_INIT ([BOOLEAN]) :  Take carbon from atmosphere if carbohydrate reserve too small 	{OK_STOMATE}
+ALWAYS_INIT =  y, y, y, y, y, y, y, y, y, y, n, y, y 
+
 # RESIDENCE_TIME ([years]) :  residence time of trees 	{OK_DGVM and NOT(LPJ_GAP_CONST_MORT)}
 RESIDENCE_TIME =  -9999., 30.0, 30.0, 40.0, 40.0, 40.0, 80.0, 80.0, 80.0, 0.0, 0.0, 0.0, 0.0  
@@ -619,6 +739,6 @@
 TREAT_EXPANSION =  n 
 
-# LPJ_GAP_CONST_MORT ([FLAG]) :  prescribe mortality if not using DGVM? 	{OK_STOMATE}
-LPJ_GAP_CONST_MORT =  y 
+# LPJ_GAP_CONST_MORT ([FLAG]) :  Constant mortality 	{OK_STOMATE AND NOT OK_DGVM}
+LPJ_GAP_CONST_MORT =  y/n depending on OK_DGVM 
 
 # HARVEST_AGRI ([FLAG]) :  Harvest model for agricultural PFTs. 	{OK_STOMATE }
@@ -626,5 +746,5 @@
 
 # FIRE_DISABLE ([FLAG]) :  no fire allowed 	{OK_STOMATE }
-FIRE_DISABLE =  n 
+FIRE_DISABLE =  y 
 
 # SPINUP_ANALYTIC (BOOLEAN    ) :  Activation of the analytic resolution of the spinup. 	{OK_STOMATE}
@@ -643,26 +763,17 @@
 LAI_MAP =  n 
 
-# SLOWPROC_LAI_OLD_INTERPOL ([FLAG]) :  Flag to use old "interpolation" of LAI 	{LAI_MAP}
-SLOWPROC_LAI_OLD_INTERPOL =  n 
-
-# LAND_USE ([FLAG]) :  Read a land_use vegetation map 	{OK_SECHIBA or OK_STOMATE}
-LAND_USE =  y 
-
-# VEGET_REINIT ([FLAG] ) :  booleen to indicate that a new LAND USE file will be used. 	{LAND_USE}
+# VEGET_REINIT ([FLAG] ) :  Reset veget_year counter (obsolet) 	{VEGET_UPDATE > 0Y}
 VEGET_REINIT =  y 
 
-# LAND_COVER_CHANGE ([FLAG] ) :  treat land use modifications 	{LAND_USE}
-LAND_COVER_CHANGE =  n 
-
-# VEGET_YEAR ([FLAG] ) :  Year of the land_use vegetation map to be read 	{LAND_USE}
+# VEGETMAP_RESET ([FLAG] ) :  Flag to change vegetation map without activating LAND USE change for carbon fluxes and reset carbon related variables to zero 	{}
+VEGETMAP_RESET =  n 
+
+# VEGET_YEAR ([FLAG] ) :  Year of the vegetation map to be read 	{}
 VEGET_YEAR =  1 
 
-# SLOWPROC_VEGET_OLD_INTERPOL ([FLAG] ) :  Flag to use old "interpolation" of vegetation map. 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-SLOWPROC_VEGET_OLD_INTERPOL =  n 
-
-# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA or HYDROL_CWRR}
+# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA}
 MAXMASS_SNOW =  3000. 
 
-# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA or HYDROL_CWRR}
+# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA}
 SNOWCRI =  1.5 
 
@@ -674,8 +785,20 @@
 
 # SNOW_TRANS ([m]   ) :  Transformation time constant for snow 	{OK_SECHIBA}
-SNOW_TRANS =  0.3 
-
-# Z0_OVER_HEIGHT ([-]   ) :  to get z0 from height  	{OK_SECHIBA }
-Z0_OVER_HEIGHT =  1/16. 
+SNOW_TRANS =  0.2 
+
+# OK_NUDGE_MC ([FLAG]) :  Activate nudging of soil moisture 	{}
+OK_NUDGE_MC =  n 
+
+# NUDGE_TAU_MC ([-]) :  Relaxation time for nudging of soil moisture expressed in fraction of the day 	{OK_NUDGE_MC}
+NUDGE_TAU_MC =  1 
+
+# OK_NUDGE_SNOW ([FLAG]) :  Activate nudging of snow variables 	{}
+OK_NUDGE_SNOW =  n 
+
+# NUDGE_TAU_SNOW ([-]) :  Relaxation time for nudging of snow variables 	{OK_NUDGE_SNOW}
+NUDGE_TAU_SNOW =  1 
+
+# NUDGE_INTERPOL_WITH_XIOS ([FLAG]) :  Activate reading and interpolation with XIOS for nudging fields 	{OK_NUDGE_MC or OK_NUDGE_SNOW}
+NUDGE_INTERPOL_WITH_XIOS =  n 
 
 # HEIGHT_DISPLACEMENT ([m]  ) :  Magic number which relates the height to the displacement height. 	{OK_SECHIBA }
@@ -689,5 +812,5 @@
 
 # TCST_SNOWA ([days]) :  Time constant of the albedo decay of snow 	{OK_SECHIBA }
-TCST_SNOWA =  5.0  
+TCST_SNOWA =  10.0  
 
 # SNOWCRI_ALB ([cm]  ) :  Critical value for computation of snow albedo 	{OK_SECHIBA}
@@ -724,6 +847,6 @@
 ALB_BARE_MODEL =  n 
 
-# Z0CDRAG_AVE ([FLAG]) :  Average method for z0 	{OK_SECHIBA}
-Z0CDRAG_AVE =  y 
+# ALB_BG_MODIS ([FLAG]) :  Read bare soil albedo from file with background MODIS data 	{OK_SECHIBA}
+ALB_BG_MODIS =  y 
 
 # IMPOSE_AZE ([FLAG]) :  Should the surface parameters be prescribed 	{OK_SECHIBA}
@@ -745,4 +868,103 @@
 CONDVEG_EMIS =  1.0 
 
+# ROUGH_DYN ([FLAG]) :  Account for a dynamic roughness height 	{OK_SECHIBA}
+ROUGH_DYN =  y 
+
+# C1 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C1 =  0.32 
+
+# C2 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C2 =  0.264 
+
+# C3 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C3 =  15.1 
+
+# Cdrag_foliage ([-] ) :  Drag coefficient of the foliage 	{ROUGH_DYN}
+Cdrag_foliage =  0.2 
+
+# Ct ([-] ) :  Heat transfer coefficient of the leaf 	{ROUGH_DYN}
+Ct =  0.01 
+
+# Prandtl ([-] ) :  Prandtl number used in the calculation of Ct* 	{ROUGH_DYN}
+Prandtl =  0.71 
+
+# xansmax  ([-] ) :  maximum snow albedo 	{OK_SECHIBA}
+xansmax  =  0.85 
+
+# xansmin  ([-] ) :  minimum snow albedo 	{OK_SECHIBA}
+xansmin  =  0.50 
+
+# xans_todry  ([S-1] ) :  albedo decay rate for the dry snow  	{OK_SECHIBA}
+xans_todry  =  0.008 
+
+# xans_t  ([S-1] ) :  albedo decay rate for the wet snow  	{OK_SECHIBA}
+xans_t  =  0.24 
+
+# xrhosmax  ([-] ) :  maximum snow density  	{OK_SECHIBA}
+xrhosmax  =  750 
+
+# xwsnowholdmax1 ([-] ) :  snow holding capacity 1 	{OK_SECHIBA}
+xwsnowholdmax1 =  0.03 
+
+# xwsnowholdmax2 ([-] ) :  snow holding capacity 2 	{OK_SECHIBA}
+xwsnowholdmax2 =  0.10 
+
+# xsnowrhohold  ([kg/m3] ) :  snow density  	{OK_SECHIBA}
+xsnowrhohold  =  200.0 
+
+# ZSNOWTHRMCOND1 ([W/m/K] ) :  Thermal conductivity Coef 1 	{OK_SECHIBA}
+ZSNOWTHRMCOND1 =  0.02  
+
+# ZSNOWTHRMCOND2 ([W m5/(kg2 K)] ) :  Thermal conductivity Coef 2 	{OK_SECHIBA}
+ZSNOWTHRMCOND2 =  2.5E-6 
+
+# ZSNOWTHRMCOND_AVAP ([W/m/K] ) :  Thermal conductivity Coef 1 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_AVAP =  -0.06023 
+
+# ZSNOWTHRMCOND_BVAP ([W/m] ) :  Thermal conductivity Coef 2 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_BVAP =  -2.5425 
+
+# ZSNOWTHRMCOND_CVAP ([K] ) :  Thermal conductivity Coef 3 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_CVAP =  -289.99 
+
+# ZSNOWCMPCT_RHOD ([kg/m3]) :  Snow compaction coefficent 	{OK_SECHIBA}
+ZSNOWCMPCT_RHOD =  150.0 
+
+# ZSNOWCMPCT_ACM ([1/s]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_ACM =  2.8e-6 
+
+# ZSNOWCMPCT_BCM ([1/K]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_BCM =  0.04 
+
+# ZSNOWCMPCT_CCM ([m3/kg] ) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_CCM =  460. 
+
+# ZSNOWCMPCT_V0 ([Pa/s]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_V0 =  3.7e7 
+
+# ZSNOWCMPCT_VT ([1/K]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VT =  0.081 
+
+# ZSNOWCMPCT_VR ([m3/kg]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VR =  0.018 
+
+# CB ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CB =  5.0 
+
+# CC ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CC =  5.0 
+
+# CD ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CD =  5.0 
+
+# RAYT_CSTE ([W.m^{-2}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+RAYT_CSTE =  125 
+
+# DEFC_PLUS ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_PLUS =  23.E-3 
+
+# DEFC_MULT ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_MULT =  1.5 
+
 # NLAI ([-]  ) :  Number of LAI levels 	{OK_SECHIBA}
 NLAI =  20 
@@ -755,12 +977,21 @@
 
 # DOWNREGULATION_CO2 ([FLAG]   ) :  Activation of CO2 downregulation 	{OK_SECHIBA}
-DOWNREGULATION_CO2 =  n  
+DOWNREGULATION_CO2 =  y 
 
 # DOWNREGULATION_CO2_BASELEVEL ([ppm]   ) :  CO2 base level 	{OK_SECHIBA }
-DOWNREGULATION_CO2_BASELEVEL =  280. 
+DOWNREGULATION_CO2_BASELEVEL =  380. 
+
+# GB_REF ([s m-1]   ) :  Leaf bulk boundary layer resistance 	{}
+GB_REF =  1./25. 
 
 # CLAYFRACTION_DEFAULT ([-]   ) :  default fraction of clay 	{OK_SECHIBA }
 CLAYFRACTION_DEFAULT =  0.2  
 
+# SANDFRACTION_DEFAULT ([-]   ) :  default fraction of sand 	{OK_SECHIBA }
+SANDFRACTION_DEFAULT =  0.4  
+
+# SILTFRACTION_DEFAULT ([-]   ) :  default fraction of silt 	{OK_SECHIBA }
+SILTFRACTION_DEFAULT =  0.4  
+
 # MIN_VEGFRAC  ([-]  ) :  Minimal fraction of mesh a vegetation type can occupy  	{OK_SECHIBA }
 MIN_VEGFRAC  =  0.001  
@@ -769,8 +1000,8 @@
 STEMPDIAG_BID  =  280. 
 
-# LAI_LEVEL_DEPTH ([-]  ) :   	{OK_CO2}
+# LAI_LEVEL_DEPTH ([-]  ) :   	{}
 LAI_LEVEL_DEPTH =  0.15 
 
-# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{OK_CO2}
+# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{}
 Oi =  210000. 
 
@@ -796,7 +1027,4 @@
 FIREFRAC_COEFF  =  0.45, 0.8, 0.6, 0.13 
 
-# AVAILABILITY_FACT  ([-]   ) :   	{OK_STOMATE }
-AVAILABILITY_FACT  =  0.1 
-
 # REF_GREFF ([1/year]  ) :  Asymptotic maximum mortality rate 	{OK_STOMATE }
 REF_GREFF =  0.035 
@@ -805,7 +1033,4 @@
 OK_MINRES =  y 
 
-# TAU_LEAFINIT ([days]  ) :  time to attain the initial foliage using the carbohydrate reserve  	{OK_STOMATE }
-TAU_LEAFINIT =  10. 
-
 # RESERVE_TIME_TREE  ([days]    ) :  maximum time during which reserve is used (trees)  	{OK_STOMATE }
 RESERVE_TIME_TREE  =  30. 
@@ -814,7 +1039,4 @@
 RESERVE_TIME_GRASS  =  20.  
 
-# R0 ([-]  ) :  Standard root allocation  	{OK_STOMATE }
-R0 =  0.3  
-
 # F_FRUIT ([-]    ) :  Standard fruit allocation 	{OK_STOMATE }
 F_FRUIT =  0.1  
@@ -832,7 +1054,4 @@
 Z_NITROGEN =  0.2  
 
-# LAI_MAX_TO_HAPPY ([-]  ) :   	{OK_STOMATE }
-LAI_MAX_TO_HAPPY =  0.5  
-
 # NLIM_TREF  ([C]  ) :   	{OK_STOMATE }
 NLIM_TREF  =  25.  
@@ -877,7 +1096,4 @@
 MASS_RATIO_HEART_SAP =  3. 
 
-# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE }
-FRAC_GROWTHRESP =  0.28 
-
 # TAU_HUM_MONTH ([days]  ) :  time scales for phenology and other processes 	{OK_STOMATE }
 TAU_HUM_MONTH =  20.  
@@ -1012,4 +1228,7 @@
 MOIST_COEFF =  1.1, 2.4, 0.29 
 
+# MOISTCONT_MIN ([-]) :  minimum soil wetness to limit the heterotrophic respiration 	{OK_STOMATE }
+MOISTCONT_MIN =  0.25 
+
 # FRAC_TURNOVER_DAILY  ([-]) :   	{OK_STOMATE }
 FRAC_TURNOVER_DAILY  =  0.55 
@@ -1018,7 +1237,4 @@
 TAX_MAX =  0.8 
 
-# ALWAYS_INIT ([-]   ) :  take carbon from atmosphere if carbohydrate reserve too small?  	{OK_STOMATE }
-ALWAYS_INIT =  n  
-
 # MIN_GROWTHINIT_TIME  ([days]  ) :  minimum time since last beginning of a growing season 	{OK_STOMATE }
 MIN_GROWTHINIT_TIME  =  300.  
@@ -1073,8 +1289,8 @@
 
 # CARBON_TAU_ISLOW ([days]) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_ISLOW =  5.48 
+CARBON_TAU_ISLOW =  7.0 
 
 # CARBON_TAU_IPASSIVE ([days] ) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_IPASSIVE =  241. 
+CARBON_TAU_IPASSIVE =  300. 
 
 # FLUX_TOT_COEFF ([days] ) :  	{OK_STOMATE }
@@ -1084,7 +1300,4 @@
 NEW_TURNOVER_TIME_REF =  20.  
 
-# DT_TURNOVER_TIME  ([days]  ) :   	{OK_STOMATE }
-DT_TURNOVER_TIME  =  10. 
-
 # LEAF_AGE_CRIT_TREF ([days]  ) :   	{OK_STOMATE }
 LEAF_AGE_CRIT_TREF =  20.  
@@ -1174,6 +1387,9 @@
 EVERYWHERE_INIT =  0.05  
 
-# THERMOSOIL_NBLEV ((-)) :  Number of soil level 	{}
-THERMOSOIL_NBLEV =  7 
+# PRINTLEV ([0, 1, 2, 3, 4]) :  Print level for text output 	{}
+PRINTLEV =  2 
+
+# PRINTLEV_modname ([0, 1, 2, 3, 4]) :  Specific print level of text output for the module "modname". Default as PRINTLEV. 	{}
+PRINTLEV_modname =  PRINTLEV 
 
 # DRY_SOIL_HEAT_CAPACITY ([J.m^{-3}.K^{-1}] ) :  Dry soil Heat capacity of soils 	{OK_SECHIBA }
@@ -1195,40 +1411,49 @@
 SNOW_DENSITY =  330.0 
 
-# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
+# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{}
 NOBIO_WATER_CAPAC_VOLUMETRI =  150. 
+
+# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
+SECHIBA_QSINT  =  0.02 
+
+# OK_FREEZE ([FLAG]) :  Activate the complet soil freezing scheme 	{OK_SECHIBA }
+OK_FREEZE =  TRUE 
+
+# READ_REFTEMP ([FLAG]) :  Initialize soil temperature using climatological temperature 	{}
+READ_REFTEMP =  True/False depening on OK_FREEZE 
+
+# OK_FREEZE_THERMIX ([FLAG]) :  Activate thermal part of the soil freezing scheme 	{}
+OK_FREEZE_THERMIX =  True if OK_FREEZE else false 
+
+# OK_ECORR ([FLAG]) :  Energy correction for freezing 	{OK_FREEZE_THERMIX}
+OK_ECORR =  True if OK_FREEZE else false 
+
+# OK_FREEZE_THAW_LATENT_HEAT ([FLAG]) :  Activate latent heat part of the soil freezing scheme 	{}
+OK_FREEZE_THAW_LATENT_HEAT =  FALSE  
+
+# POROS ([-] ) :  Soil porosity  	{OK_SECHIBA}
+POROS =  0.41 
+
+# fr_dT ([K] ) :  Freezing window     	{OK_SECHIBA}
+fr_dT =  2.0 
+
+# OK_FREEZE_CWRR ([FLAG]) :  CWRR freezing scheme by I. Gouttevin 	{}
+OK_FREEZE_CWRR =  True if OK_FREEZE else false 
+
+# OK_THERMODYNAMICAL_FREEZING ([FLAG]) :  Calculate frozen fraction thermodynamically  	{OK_FREEZE_CWRR}
+OK_THERMODYNAMICAL_FREEZING =  True 
+
+# CHECK_CWRR ([FLAG]) :  Calculate diagnostics to check CWRR water balance 	{}
+CHECK_CWRR =  n 
+
+# VEGET_UPDATE ([years]) :  Update vegetation frequency: 0Y or 1Y 	{}
+VEGET_UPDATE =  0Y 
+
+# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
+SECHIBA_ZCANOP =  0.5 
 
 # SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
 SECHIBA_QSINT  =  0.1 
 
-# CHOISNEL_DIFF_MIN ([kg/m^2/dt]) :  Diffusion constant for the slow regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MIN =  0.001 
-
-# CHOISNEL_DIFF_MAX ([kg/m^2/dt]) :  Diffusion constant for the fast regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MAX =  0.1 
-
-# CHOISNEL_DIFF_EXP ([-]) :  The exponential in the diffusion law 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_EXP =  1.5 
-
-# CHOISNEL_RSOL_CSTE ([s/m^2]) :  Constant in the computation of resistance for bare  soil evaporation  	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_RSOL_CSTE =  33.E3 
-
-# HCRIT_LITTER ([m]) :  Scaling depth for litter humidity 	{OK_SECHIBA and .NOT.(HYDROL_CWRR) }
-HCRIT_LITTER =  0.08  
-
-# SECHIBA_DAY ([days]) :  Time within the day simulated 	{OK_SECHIBA}
-SECHIBA_DAY =  0.0 
-
-# VEGET_UPDATE ([years]) :  Update vegetation frequency 	{LAND_USE}
-VEGET_UPDATE =  0Y 
-
-# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
-SECHIBA_ZCANOP =  0.5 
-
-# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
-SECHIBA_QSINT  =  0.1 
-
-# DT_SLOW ([seconds]) :  Time step of STOMATE and other slow processes 	{OK_STOMATE}
-DT_SLOW =  86400. 
-
 # SECHIBA_VEGMAX ([-]) :  Maximum vegetation distribution within the mesh (0-dim mode) 	{IMPOSE_VEG}
 SECHIBA_VEGMAX =  0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0 
@@ -1246,4 +1471,7 @@
 CLAY_FRACTION =  0.2 
 
+# SAND_FRACTION ([-] ) :  Fraction of the clay fraction (0-dim mode) 	{IMPOSE_VEG and IMPOSE_SOIL}
+SAND_FRACTION =  0.4 
+
 # REINF_SLOPE ([-]) :  Slope coef for reinfiltration  	{IMPOSE_VEG}
 REINF_SLOPE =  0.1 
@@ -1255,7 +1483,4 @@
 GET_SLOPE =  n 
 
-# LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(LAI_MAP)}
-LAI_FILE =  lai2D.nc 
-
 # LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAI_MAP}
 LAI_FILE =  lai2D.nc 
@@ -1264,18 +1489,6 @@
 RENORM_LAI =  n 
 
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAND_USE}
+# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{}
 VEGETATION_FILE =  PFTmap.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
 
 # SOILCLASS_FILE ([FILE]) :  Name of file from which soil types are read 	{NOT(IMPOSE_VEG)}
@@ -1288,107 +1501,101 @@
 TOPOGRAPHY_FILE =  cartepente2d_15min.nc 
 
+# WOODHARVEST_FILE ([FILE]) :  Name of file from which the wood harvest will be read 	{DO_WOOD_HARVEST}
+WOODHARVEST_FILE =  woodharvest.nc 
+
 # SOILALB_FILE ([FILE]) :  Name of file from which the bare soil albedo 	{NOT(IMPOSE_AZE)}
 SOILALB_FILE =  soils_param.nc 
 
+# ALB_BG_FILE ([FILE]) :  Name of file from which the background albedo is read  	{ALB_BG_MODIS}
+ALB_BG_FILE =  alb_bg.nc 
+
 # CDRAG_FROM_GCM ([FLAG]) :  Keep cdrag coefficient from gcm. 	{OK_SECHIBA}
 CDRAG_FROM_GCM =  y 
 
-# DIFFUCO_LEAFCI ([ppm]) :  Initial leaf CO2 level if not found in restart 	{OK_SECHIBA}
-DIFFUCO_LEAFCI =  233. 
-
-# ALLOW_WEATHERGEN ([FLAG]) :  Allow weather generator to create data 	{}
-ALLOW_WEATHERGEN =  n 
-
-# FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
-FORCING_FILE =  forcing_file.nc 
-
-# HYDROL_OK_HDIFF ([FLAG]) :  do horizontal diffusion? 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)  }
-HYDROL_OK_HDIFF =  n 
-
-# HYDROL_SNOW ([kg/m^2]) :  Initial snow mass if not found in restart 	{OK_SECHIBA}
-HYDROL_SNOW =  0.0 
-
-# HYDROL_SNOWAGE ([days]) :  Initial snow age if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOWAGE =  0.0 
-
-# HYDROL_SNOW_NOBIO ([m]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO =  0.0 
-
-# HYDROL_SNOW_NOBIO_AGE ([days]) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO_AGE =  0.0 
-
-# HYDROL_HUMR ([-]) :  Initial soil moisture stress if not found in restart 	{OK_SECHIBA }
-HYDROL_HUMR =  1.0 
-
-# HYDROL_BQSB ([kg/m^2]) :  Initial restart deep soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_BQSB =  999999.  
-
-# HYDROL_GQSB ([kg/m^2]) :  Initial upper soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_GQSB =  0.0 
-
-# HYDROL_DSG ([m]) :  Initial upper reservoir depth if not found in restart 	{OK_SECHIBA }
-HYDROL_DSG =  0.0 
-
-# HYDROL_QSV ([kg/m^2]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA }
-HYDROL_QSV =  0.0 
-
-# HYDROL_DSP ([m]) :  Initial dry soil above upper reservoir if not found in restart 	{OK_SECHIBA }
-HYDROL_DSP =  999999. 
-
-# HYDROL_TAU_HDIFF ([seconds]) :  time scale (s) for horizontal diffusion of water 	{HYDROL_OK_HDIFF}
-HYDROL_TAU_HDIFF =  86400. 
-
-# CHECK_CWRR ([FLAG]) :  Should we check detailed CWRR water balance ? 	{HYDROL_CWRR}
-CHECK_CWRR =  n 
-
-# DO_PONDS ([FLAG]) :  Should we include ponds  	{HYDROL_CWRR}
+# N_FERTIL_FILE (- ) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# N_FERTIL_FILE (-) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# ENERBIL_TSURF (Kelvin [K]) :  Initial temperature if not found in restart 	{OK_SECHIBA}
+ENERBIL_TSURF =  280. 
+
+# ENERBIL_EVAPOT () :  Initial Soil Potential Evaporation 	{OK_SECHIBA       }
+ENERBIL_EVAPOT =  0.0 
+
+# BEDROCK_FLAG ([FLAG]) :  Flag to consider bedrock at deeper layers. 	{}
+BEDROCK_FLAG =  0 
+
+# THERMOSOIL_TPRO (Kelvin [K]) :  Initial soil temperature profile if not found in restart 	{OK_SECHIBA}
+THERMOSOIL_TPRO =  280. 
+
+# SOIL_REFTEMP_FILE ([FILE]) :  File with climatological soil temperature 	{READ_REFTEMP}
+SOIL_REFTEMP_FILE =  reftemp.nc 
+
+# DO_PONDS ([FLAG]) :  Should we include ponds  	{}
 DO_PONDS =  n 
 
-# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{HYDROL_CWRR}
+# FROZ_FRAC_CORR  ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+FROZ_FRAC_CORR  =  1.0 
+
+# MAX_FROZ_HYDRO ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+MAX_FROZ_HYDRO =  1.0 
+
+# SMTOT_CORR ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+SMTOT_CORR =  2.0 
+
+# DO_RSOIL ([FLAG]) :  Should we reduce soil evaporation with a soil resistance 	{}
+DO_RSOIL =  n 
+
+# OK_DYNROOT ([FLAG]) :  Calculate dynamic root profile to optimize soil moisture usage   	{}
+OK_DYNROOT =  n 
+
+# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{}
 CWRR_N_VANGENUCHTEN =  1.89, 1.56, 1.31 
 
-# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{HYDROL_CWRR}
+# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{}
 CWRR_A_VANGENUCHTEN =  0.0075, 0.0036, 0.0019 
 
-# VWC_RESIDUAL ([mm]  ) :  Residual soil water content 	{HYDROL_CWRR}
+# VWC_RESIDUAL ([m3/m3]  ) :  Residual soil water content 	{}
 VWC_RESIDUAL =  0.065, 0.078, 0.095 
 
-# VWC_SAT ([-]  ) :  Saturated soil water content 	{HYDROL_CWRR}
+# VWC_SAT ([m3/m3]  ) :  Saturated soil water content 	{}
 VWC_SAT =  0.41, 0.43, 0.41 
 
-# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{HYDROL_CWRR }
+# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{}
 CWRR_KS  =  1060.8, 249.6, 62.4 
 
-# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{HYDROL_CWRR}
+# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{}
 WETNESS_TRANSPIR_MAX =  0.5, 0.5, 0.5 
 
-# DRAINAGE_FACTOR_F ([-]   ) :  Max value of the permeability coeff at the bottom of the soil  	{HYDROL_CWRR}
-DRAINAGE_FACTOR_F =  1.0, 1.0, 1.0  
-
-# VWC_FC  ([-]   ) :  Volumetric water content field capacity 	{HYDROL_CWRR}
+# VWC_FC  ([m3/m3]   ) :  Volumetric water content field capacity 	{}
 VWC_FC  =  0.32, 0.32, 0.32 
 
-# VWC_WP ([-]   ) :  Volumetric water content Wilting pt 	{HYDROL_CWRR}
+# VWC_WP ([m3/m3]   ) :  Volumetric water content Wilting pt 	{}
 VWC_WP =  0.10, 0.10, 0.10  
 
-# VWC_MIN_FOR_WET_ALB ([-]  ) :  Vol. wat. cont. above which albedo is cst 	{HYDROL_CWRR}
+# VWC_MIN_FOR_WET_ALB ([m3/m3]  ) :  Vol. wat. cont. above which albedo is cst 	{}
 VWC_MIN_FOR_WET_ALB =  0.25, 0.25, 0.25 
 
-# VWC_MAX_FOR_DRY_ALB ([-]   ) :  Vol. wat. cont. below which albedo is cst 	{HYDROL_CWRR}
+# VWC_MAX_FOR_DRY_ALB ([m3/m3]   ) :  Vol. wat. cont. below which albedo is cst 	{}
 VWC_MAX_FOR_DRY_ALB =  0.1, 0.1, 0.1 
 
-# HYDROL_MOISTURE_CONTENT () :  Soil moisture on each soil tile and levels 	{HYDROL_CWRR       }
+# HYDROL_MOISTURE_CONTENT ([m3/m3]) :  Soil moisture on each soil tile and levels 	{}
 HYDROL_MOISTURE_CONTENT =  0.3 
 
-# US_INIT () :  US_NVM_NSTM_NSLM 	{HYDROL_CWRR       }
+# US_INIT ([-]) :  US_NVM_NSTM_NSLM 	{}
 US_INIT =  0.0 
 
-# FREE_DRAIN_COEF () :  Coefficient for free drainage at bottom 	{HYDROL_CWRR       }
-FREE_DRAIN_COEF =  1.0, 1.0, 1.0 
-
-# WATER_TO_INFILT () :  Water to be infiltrated on top of the soil 	{HYDROL_CWRR    }
+# ZWT_FORCE ([m]) :  Prescribed water depth, dimension nstm 	{}
+ZWT_FORCE =  -9999. -9999. -9999. 
+
+# FREE_DRAIN_COEF ([-]) :  Coefficient for free drainage at bottom, dimension nstm 	{}
+FREE_DRAIN_COEF =  1.0 1.0 1.0 
+
+# WATER_TO_INFILT ([mm]) :  Water to be infiltrated on top of the soil 	{}
 WATER_TO_INFILT =  0.0 
 
-# EVAPNU_SOIL () :  Bare soil evap on each soil if not found in restart 	{HYDROL_CWRR  }
+# EVAPNU_SOIL ([mm]) :  Bare soil evap on each soil if not found in restart 	{}
 EVAPNU_SOIL =  0.0 
 
@@ -1396,39 +1603,39 @@
 HYDROL_SNOW =  0.0 
 
-# HYDROL_SNOWAGE () :  Initial snow age if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOWAGE (***) :  Initial snow age if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOWAGE =  0.0 
 
-# HYDROL_SNOW_NOBIO () :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO ([mm]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO =  0.0 
 
-# HYDROL_SNOW_NOBIO_AGE () :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO_AGE (***) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO_AGE =  0.0 
 
-# HYDROL_QSV () :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
+# HYDROL_QSV ([mm]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
 HYDROL_QSV =  0.0 
 
-# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_N0  =  0.95 
-
-# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_POWER =  0.34 
-
-# CWRR_AKS_A0  ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_A0  =  0.00012 
-
-# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_POWER =  0.53 
-
-# KFACT_DECAY_RATE ([-]) :  Factor for Ks decay with depth 	{HYDROL_CWRR }
+# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_N0  =  0.0 
+
+# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_POWER =  0.0 
+
+# CWRR_AKS_A0  ([1/mm]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_A0  =  0.0 
+
+# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_POWER =  0.0 
+
+# KFACT_DECAY_RATE ([1/m]) :  Factor for Ks decay with depth 	{}
 KFACT_DECAY_RATE =  2.0 
 
-# KFACT_STARTING_DEPTH ([-]) :  Depth for compacted value of Ks  	{HYDROL_CWRR }
+# KFACT_STARTING_DEPTH ([m]) :  Depth for compacted value of Ks  	{}
 KFACT_STARTING_DEPTH =  0.3 
 
-# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{HYDROL_CWRR }
+# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{}
 KFACT_MAX =  10.0 
 
-# ROUTING_TIMESTEP ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
-ROUTING_TIMESTEP =  86400. 
+# DT_ROUTING  ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
+DT_ROUTING  =  86400. 
 
 # ROUTING_RIVERS ([-]) :  Number of rivers  	{RIVER_ROUTING}
@@ -1445,11 +1652,11 @@
 
 # SLOW_TCST ([days]) :  Time constant for the slow reservoir  	{RIVER_ROUTING }
-SLOW_TCST =  n 
+SLOW_TCST =  25.0  
 
 # FAST_TCST ([days]) :  Time constant for the fast reservoir  	{RIVER_ROUTING }
-FAST_TCST =  fast_tcst_cwrr or fast_tcst_chois depending on flag HYDROL_CWRR 
+FAST_TCST =  3.0  
 
 # STREAM_TCST ([days]) :  Time constant for the stream reservoir  	{RIVER_ROUTING}
-STREAM_TCST =  stream_tcst_cwrr or stream_tcst_chois depending on flag HYDROL_CWRR 
+STREAM_TCST =  0.24 
 
 # FLOOD_TCST ([days]) :  Time constant for the flood reservoir  	{RIVER_ROUTING}
@@ -1471,9 +1678,12 @@
 POND_CRI =  2000. 
 
+# MAX_LAKE_RESERVOIR ([kg/m2(routing area)] ) :  Maximum limit of water in lake_reservoir 	{RIVER_ROUTING}
+MAX_LAKE_RESERVOIR =  7000 
+
 # RIVER_DESC ([FLAG]) :  Writes out a description of the rivers 	{RIVER_ROUTING}
 RIVER_DESC =  n 
 
 # RIVER_DESC_FILE ([FILE]) :  Filename in which we write the description of the rivers. If suffix is ".nc" a netCDF file is created 	{RIVER_DESC}
-RIVER_DESC_FILE =  river_desc.txt 
+RIVER_DESC_FILE =  river_desc.nc 
 
 # ROUTING_FILE ([FILE]) :  Name of file which contains the routing information 	{RIVER_ROUTING}
@@ -1504,11 +1714,8 @@
 FORCESOIL_NB_YEAR =  1 
 
-# BAVARD ([-]) :  level of online diagnostics in STOMATE (0-4) 	{OK_STOMATE}
-BAVARD =  1 
-
-# REFTEMP_FILE ([FILE]) :  Name of file from which the reference temperature is read 	{OK_STOMATE}
-REFTEMP_FILE =  reftemp.nc 
-
 # XIOS_ORCHIDEE_OK ([FLAG]) :  Use XIOS for writing diagnostics file 	{}
-XIOS_ORCHIDEE_OK =  n 
-
+XIOS_ORCHIDEE_OK =  y  
+
+# XIOS_INTERPOLATION ([FLAG]) :  Actiave reading and intrepolation using XIOS 	{XIOS_ORCHIDEE_OK}
+XIOS_INTERPOLATION =  n 
+
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC_STO/COMP/sechiba.card
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC_STO/COMP/sechiba.card	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC_STO/COMP/sechiba.card	(revision 5633)
@@ -21,5 +21,4 @@
             (${R_IN}/SRF/SOIL/soils_param.nc, .), \
             (${R_IN}/SRF/cartepente2d_15min.nc, .), \
-	    (${R_IN}/SRF/reftemp.nc, .), \
             (${R_IN}/SRF/albedo/alb_bg_modisopt_2D_ESA_v2.nc, alb_bg.nc), \
             (${R_IN}/SRF/ROUTING/floodplains.nc, .), \
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC_STO/PARAM/orchidee.default
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC_STO/PARAM/orchidee.default	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/OOL_SEC_STO/PARAM/orchidee.default	(revision 5633)
@@ -6,5 +6,5 @@
 #
 #*******************************************************************************************
-#                    Namelist for ORCHIDEE (trunk revision 2135) 
+#                    Namelist for ORCHIDEE 
 #*******************************************************************************************
 #
@@ -18,12 +18,15 @@
 #*******************************************************************************************
 
-# DEBUG_INFO ([FLAG] ) :  Flag for debug information 	{[-]}
-DEBUG_INFO =  n 
+# LWDOWN_CONS ([FLAG]) :  Conserve longwave downwelling radiation in the forcing 	{}
+LWDOWN_CONS =  n 
+
+# SWDOWN_CONS ([FLAG]) :  Conserve shortwave downwelling radiation in the forcing 	{}
+SWDOWN_CONS =  LWDOWN_CONS 
 
 # FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
 FORCING_FILE =  forcing_file.nc 
 
-# SPLIT_DT ([-]) :  splits the timestep imposed by the forcing 	{NOT(WEATHERGEN)}
-SPLIT_DT =  12 
+# DT_SECHIBA ([seconds]) :  Time-step of the SECHIBA component 	{NOT(WEATHERGEN)}
+DT_SECHIBA =  1800. 
 
 # RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions 	{[-]}
@@ -40,5 +43,5 @@
 
 # TIME_LENGTH ([seconds, days, months, years]) :  Length of the integration in time. 	{[-]}
-TIME_LENGTH =  DEF 
+TIME_LENGTH =  Full length of the forcing file  
 
 # RELAXATION ([FLAG]) :  method of forcing 	{[-]}
@@ -48,17 +51,8 @@
 RELAX_A =  1.0 
 
-# NO_INTER  ([FLAG]) :  No interpolation IF split is larger than 1 	{[-]}
-NO_INTER  =  y 
-
-# INTER_LIN ([FLAG]) :  Interpolation IF split is larger than 1 	{[-]}
-INTER_LIN =  n 
-
 # SPRED_PREC ([-]) :  Spread the precipitation. 	{[-]}
-SPRED_PREC =  1 
-
-# NETRAD_CONS ([FLAG]) :  Conserve net radiation in the forcing 	{INTER_LIN}
-NETRAD_CONS =  y 
-
-# ATM_CO2 ([ppm]) :  Value for atm CO2 	{[-]}
+SPRED_PREC =  Half of the forcing time step or uniform, depending on dt_force and dt_sechiba 
+
+# ATM_CO2 ([ppm]) :  Value to precribe atmosoheric CO2 	{[FORCE_CO2_VEG=y or Offline mode]}
 ATM_CO2 =  350. 
 
@@ -87,4 +81,13 @@
 ZONAL_RES =  2. 
 
+# HEIGHT_LEV1 ([m]) :  Height at which T and Q are given 	{offline mode}
+HEIGHT_LEV1 =  2.0 
+
+# HEIGHT_LEVW ([m]) :  Height at which the wind is given 	{offline mode}
+HEIGHT_LEVW =  10.0 
+
+# NBUFF (-) :  Number of time steps of data to buffer between each reading of the forcing file 	{OFF_LINE}
+NBUFF =  1 
+
 # IPPREC ([-] ) :  Use prescribed values 	{ALLOW_WEATHERGEN}
 IPPREC =  0 
@@ -102,6 +105,6 @@
 DUMP_WEATHER_GATHERED =  y 
 
-# HEIGHT_LEV1 ([m]) :   	{DUMP_WEATHER}
-HEIGHT_LEV1 =  10. 
+# HEIGHT_LEV1_DUMP ([m]) :   	{DUMP_WEATHER}
+HEIGHT_LEV1_DUMP =  10. 
 
 #*******************************************************************************************
@@ -109,30 +112,9 @@
 #*******************************************************************************************
 
-# LONGPRINT ([FLAG]) :  ORCHIDEE will print more messages 	{OK_SECHIBA}
-LONGPRINT =  n 
-
-# CHECKTIME ([FLAG]) :  ORCHIDEE will print messages on time 	{OK_SECHIBA}
-CHECKTIME =  n 
-
 # SOILTYPE_CLASSIF ([-]) :  Type of classification used for the map of soil types  	{!IMPOSE_VEG}
 SOILTYPE_CLASSIF =  zobler 
 
-# ORCHIDEE_WATCHOUT ([FLAG]) :  ORCHIDEE will write out its forcing to a file 	{}
-ORCHIDEE_WATCHOUT =  n 
-
-# DT_WATCHOUT ([seconds]) :  ORCHIDEE will write out with this frequency 	{ORCHIDEE_WATCHOUT}
-DT_WATCHOUT =  dt 
-
-# WATCHOUT_FILE ([FILE]) :  Filenane for the ORCHIDEE forcing file 	{ORCHIDEE_WATCHOUT}
-WATCHOUT_FILE =  orchidee_watchout.nc 
-
 # RIVER_ROUTING ([FLAG]) :  Decides if we route the water or not 	{OK_SECHIBA}
-RIVER_ROUTING =  n 
-
-# HYDROL_CWRR ([FLAG]) :  Allows to switch on the multilayer hydrology of CWRR 	{OK_SECHIBA}
-HYDROL_CWRR =  n 
-
-# HYDROL_SOIL_DEPTH ([m]) :  Total depth of soil reservoir 	{OK_SECHIBA }
-HYDROL_SOIL_DEPTH =  4./ 2. (if HYDROL_CWRR) 
+RIVER_ROUTING =  y 
 
 # DO_IRRIGATION ([FLAG]) :  Should we compute an irrigation flux  	{RIVER_ROUTING }
@@ -142,23 +124,20 @@
 DO_FLOODPLAINS =  n 
 
-# CHECK_WATERBAL ([FLAG]  ) :  Should we check the global water balance  	{OK_SECHIBA}
-CHECK_WATERBAL =  n 
-
-# STOMATE_OK_CO2 ([FLAG]) :  Activate CO2? 	{OK_SECHIBA }
-STOMATE_OK_CO2 =  n 
-
-# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA and OK_CO2}
-STOMATE_OK_STOMATE =  n 
+# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA}
+STOMATE_OK_STOMATE =  y 
+
+# DO_WOOD_HARVEST ([FLAG]) :  Activate Wood Harvest ? 	{OK_STOMATE}
+DO_WOOD_HARVEST =  y 
 
 # STOMATE_OK_DGVM ([FLAG]) :  Activate DGVM? 	{OK_STOMATE}
 STOMATE_OK_DGVM =  n 
 
-# DIFFUCO_OK_INCA ([FLAG]) :  Activate DIFFUCO_INCA? 	{OK_SECHIBA}
-DIFFUCO_OK_INCA =  n 
-
-# LEAFAGE_OK_INCA ([FLAG]) :  Activate LEAFAGE? 	{DIFFUCO_OK_INCA}
-LEAFAGE_OK_INCA =  n 
-
-# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{DIFFUCO_OK_INCA }
+# CHEMISTRY_BVOC ([FLAG]) :  Activate calculations for BVOC 	{OK_SECHIBA}
+CHEMISTRY_BVOC =  n 
+
+# CHEMISTRY_LEAFAGE ([FLAG]) :  Activate LEAFAGE? 	{CHEMISTRY_BVOC}
+CHEMISTRY_LEAFAGE =  n 
+
+# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{CHEMISTRY_BVOC }
 CANOPY_EXTINCTION  =  n 
 
@@ -166,15 +145,12 @@
 CANOPY_MULTILAYER =  n 
 
-# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{DIFFUCO_OK_INCA }
+# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{CHEMISTRY_BVOC }
 NOx_RAIN_PULSE =  n 
 
-# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{DIFFUCO_OK_INCA }
+# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{CHEMISTRY_BVOC }
 NOx_BBG_FERTIL =  n 
 
-# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{DIFFUCO_OK_INCA }
+# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{CHEMISTRY_BVOC }
 NOx_FERTILIZERS_USE =  n 
-
-# STOMATE_WATCHOUT ([FLAG]) :  STOMATE does minimum service 	{OK_SECHIBA }
-STOMATE_WATCHOUT =  n 
 
 # NVM ([-]) :  number of PFTs   	{OK_SECHIBA or OK_STOMATE}
@@ -184,4 +160,67 @@
 IMPOSE_PARAM =  y 
 
+# DEPTH_MAX_T (m) :  Maximum depth of the soil thermodynamics 	{}
+DEPTH_MAX_T =  90.0 
+
+# DEPTH_MAX_H (m) :  Maximum depth of soil moisture 	{}
+DEPTH_MAX_H =  2.0 
+
+# DEPTH_TOPTHICK (m) :  Thickness of upper most Layer  	{}
+DEPTH_TOPTHICK =  9.77517107e-04 
+
+# DEPTH_CSTTHICK (m) :  Depth at which constant layer thickness start 	{}
+DEPTH_CSTTHICK =  DEPTH_MAX_H  
+
+# REFINEBOTTOM (-) :  Depth at which the hydrology layers will be refined towards the bottom. 	{}
+REFINEBOTTOM =  .FALSE. 
+
+# DEPTH_GEOM (m) :  Depth at which we resume geometrical increases for temperature 	{}
+DEPTH_GEOM =  DEPTH_MAX_H  
+
+# RATIO_GEOM_BELOW (-) :  Ratio of the geometrical series defining the thickness below DEPTH_GEOM 	{}
+RATIO_GEOM_BELOW =  2 
+
+# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
+ALMA_OUTPUT =  n 
+
+# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
+OUTPUT_FILE =  sechiba_history.nc 
+
+# WRITE_STEP ([seconds]) :  Frequency in seconds for sechiba_history.nc file with IOIPSL 	{OK_SECHIBA, NOT XIOS_ORCHIDEE_OK}
+WRITE_STEP =  86400. 
+
+# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
+SECHIBA_HISTLEVEL =  5 
+
+# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
+SECHIBA_HISTFILE2 =  n 
+
+# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
+WRITE_STEP2 =  1800.0 
+
+# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
+SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
+
+# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
+SECHIBA_HISTLEVEL2 =  1 
+
+# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_OUTPUT_FILE =  stomate_history.nc 
+
+# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
+STOMATE_HIST_DT =  10. 
+
+# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
+
+# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
+STOMATE_IPCC_HIST_DT =  0. 
+
+# OK_HISTSYNC ([FLAG]) :  Syncronize and write IOIPSL output files at each time step 	{}
+OK_HISTSYNC =  FALSE 
+
+# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
+STOMATE_HISTLEVEL =  10 
+
 # SECHIBA_restart_in ([FILE]) :  Name of restart to READ for initial conditions 	{OK_SECHIBA }
 SECHIBA_restart_in =  NONE 
@@ -190,51 +229,15 @@
 SECHIBA_rest_out =  sechiba_rest_out.nc 
 
-# SECHIBA_reset_time ([FLAG]) :  Override the time from the restart files for SECHIBA and STOMATE 	{OK_SECHIBA}
-SECHIBA_reset_time =  y 
-
-# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
+# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE}
 STOMATE_RESTART_FILEIN =  NONE 
 
-# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
-STOMATE_RESTART_FILEOUT =  stomate_restart.nc 
-
-# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
-ALMA_OUTPUT =  n 
-
-# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
-OUTPUT_FILE =  sechiba_history.nc 
-
-# WRITE_STEP ([seconds]) :  Frequency in seconds at which to WRITE output 	{OK_SECHIBA}
-WRITE_STEP =  86400. 
-
-# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
-SECHIBA_HISTLEVEL =  5 
-
-# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
-SECHIBA_HISTFILE2 =  n 
-
-# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
-WRITE_STEP2 =  1800.0 
-
-# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
-SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
-
-# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
-SECHIBA_HISTLEVEL2 =  1 
-
-# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_OUTPUT_FILE =  stomate_history.nc 
-
-# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
-STOMATE_HIST_DT =  10. 
-
-# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
-
-# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
-STOMATE_IPCC_HIST_DT =  0. 
-
-# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
-STOMATE_HISTLEVEL =  10 
+# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE}
+STOMATE_RESTART_FILEOUT =  stomate_rest_out.nc 
+
+# FORCE_CO2_VEG ([FLAG]) :  Flag to force the value of atmospheric CO2 for vegetation. 	{Only in coupled mode}
+FORCE_CO2_VEG =  FALSE 
+
+# TAU_OUTFLOW ([days]) :  Number of days over which the coastal- and riverflow will be distributed 	{Only in coupled mode}
+TAU_OUTFLOW =  0 
 
 # ECCENTRICITY ([-]) :  Use prescribed values 	{ALLOW_WEATHERGEN}
@@ -247,7 +250,4 @@
 OBLIQUITY =  23.446 
 
-# OK_THROUGHFALL_PFT ([FLAG]) :  Activate use of PERCENT_THROUGHFALL_PFT 	{HYDROL_CWRR}
-OK_THROUGHFALL_PFT =  FALSE 
-
 # PFT_TO_MTC ([-]) :  correspondance array linking a PFT to MTC 	{OK_SECHIBA or OK_STOMATE}
 PFT_TO_MTC =  1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 
@@ -271,4 +271,10 @@
 SLOWPROC_HEIGHT =  0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1., 1. 
 
+# Z0_OVER_HEIGHT ([-] ) :  factor to calculate roughness height from height of canopy  	{OK_SECHIBA}
+Z0_OVER_HEIGHT =  0., 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625 
+
+# RATIO_Z0M_Z0H ([-]) :  Ratio between z0m and z0h 	{OK_SECHIBA}
+RATIO_Z0M_Z0H =  1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0  
+
 # TYPE_OF_LAI ([-]) :  Type of behaviour of the LAI evolution algorithm  	{OK_SECHIBA}
 TYPE_OF_LAI =  inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter 
@@ -283,26 +289,29 @@
 VCMAX_FIX =  0., 40., 50., 30., 35., 40.,30., 40., 35., 60., 60., 70., 70. 
 
-# DOWNREGULATION_CO2_COEFF ([-]) :  coefficient for CO2 downregulation (unitless) 	{OK_CO2}
-DOWNREGULATION_CO2_COEFF =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
-
-# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{OK_CO2}
+# DOWNREG_CO2 ([-]) :  coefficient for CO2 downregulation (unitless) 	{}
+DOWNREG_CO2 =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
+
+# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{}
 E_KmC =  -9999.,  79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430. 
 
-# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{OK_CO2}
+# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{}
 E_KmO =  -9999., 36380.,  36380.,  36380.,  36380.,  36380., 36380., 36380., 36380., 36380., 36380., 36380., 36380. 
 
-# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{OK_CO2}
+# E_Sco ([J mol-1]) :  Energy of activation for Sco 	{}
+E_Sco =  -9999., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460. 
+
+# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{}
 E_gamma_star =  -9999., 37830.,  37830.,  37830.,  37830.,  37830., 37830., 37830., 37830., 37830., 37830., 37830., 37830. 
 
-# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{OK_CO2}
+# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{}
 E_Vcmax =  -9999., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 67300., 71513., 67300. 
 
-# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{OK_CO2}
+# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{}
 E_Jmax =  -9999., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 77900., 49884., 77900.  
 
-# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 aSV =  -9999., 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 641.64, 668.39, 641.64  
 
-# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 bSV =  -9999., -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, 0., -1.07, 0.  
 
@@ -313,21 +322,30 @@
 TPHOTO_MAX =  -9999., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55. 
 
-# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 aSJ =  -9999., 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 630., 659.70, 630.  
 
-# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 bSJ =  -9999., -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, 0., -0.75, 0.  
 
-# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{OK_CO2}
+# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{}
 D_Vcmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{OK_CO2}
+# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{}
 D_Jmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{OK_CO2}
+# E_gm  ([J mol-1] ) :  Energy of activation for gm  	{ }
+E_gm  =  -9999., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., -9999., 49600., -9999.  
+
+# S_gm  ([J K-1 mol-1] ) :  Entropy term for gm  	{ }
+S_gm  =  -9999., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., -9999., 1400., -9999.  
+
+# D_gm  ([J mol-1] ) :  Energy of deactivation for gm  	{ }
+D_gm  =  -9999., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., -9999., 437400., -9999.  
+
+# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{}
 E_Rd =  -9999., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390. 
 
 # VCMAX25 ([micromol/m^2/s]) :  Maximum rate of Rubisco activity-limited carboxylation at 25Â°C 	{OK_STOMATE}
-VCMAX25 =  -9999., 65., 65., 35., 45., 55., 35., 45., 35., 70., 70., 70., 70. 
+VCMAX25 =  -9999., 45.0, 45.0, 35.0, 40.0, 50.0, 45.0, 35.0, 35.0, 50.0, 50.0, 60.0, 60.0 
 
 # ARJV ([mu mol e- (mu mol CO2)-1]) :  a coefficient of the linear regression (a+bT) defining the Jmax25/Vcmax25 ratio  	{OK_STOMATE}
@@ -337,54 +355,72 @@
 BRJV =  -9999., -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, 0., -0.035, 0. 
 
-# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{OK_CO2}
+# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{}
 KmC25 =  -9999., 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 650., 404.9, 650. 
 
-# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{OK_CO2}
+# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{}
 KmO25 =  -9999., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 450000., 278400., 450000. 
 
-# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{OK_CO2}
+# Sco25 ([bar bar-1]) :  Relative CO2 /O2 specificity factor for Rubisco at 25ÃÂ°C 	{}
+Sco25 =  -9999., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2590., 2800., 2590. 
+
+# gm25  ([mol m-2 s-1 bar-1] ) :  Mesophyll diffusion conductance at 25ÃÂÃÂ°C  	{ }
+gm25  =  -9999., 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, -9999., 0.4, -9999.  
+
+# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{}
 gamma_star25 =  -9999., 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75 
 
-# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
-a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85 
-
-# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
+# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
+a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.72, 0.85, 0.72 
+
+# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
 b1 =  -9999., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.20, 0.14, 0.20 
 
-# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{OK_CO2}
+# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{}
 g0 =  -9999., 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.01875, 0.00625, 0.01875  
 
-# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{OK_CO2}
+# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{}
 h_protons =  -9999., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4.  
 
-# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{OK_CO2}
+# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{}
 fpsir =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.4, -9999., 0.4  
 
-# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{OK_CO2}
+# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{}
 fQ =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 1., -9999., 1. 
 
-# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{OK_CO2}
+# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{}
 fpseudo =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{OK_CO2}
+# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{}
 kp =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.7, -9999., 0.7 
 
-# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{OK_CO2}
+# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{}
 alpha =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{OK_CO2}
+# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{}
 gbs =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.003, -9999., 0.003 
 
-# theta ([â]) :  Convexity factor for response of J to irradiance 	{OK_CO2}
+# theta ([â]) :  Convexity factor for response of J to irradiance 	{}
 theta =  -9999., 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7 
 
-# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{OK_CO2}
+# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{}
 alpha_LL =  -9999., 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372 
+
+# STRESS_VCMAX ([-]) :  Stress on vcmax 	{OK_SECHIBA or OK_STOMATE}
+STRESS_VCMAX =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GS ([-]) :  Stress on gs 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GS =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GM ([-]) :  Stress on gm 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GM =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
 
 # EXT_COEFF ([-]) :  extinction coefficient of the Monsi&Seaki relationship (1953) 	{OK_SECHIBA or OK_STOMATE}
 EXT_COEFF =  .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5 
 
+# EXT_COEFF_VEGETFRAC ([-]) :  extinction coefficient used for the calculation of the bare soil fraction  	{OK_SECHIBA or OK_STOMATE}
+EXT_COEFF_VEGETFRAC =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
 # HYDROL_HUMCSTE ([m]) :  Root profile 	{OK_SECHIBA}
-HYDROL_HUMCSTE =  humcste_cwrr or humcste_mct depending on flag HYDROL_CWRR 
+HYDROL_HUMCSTE =  humcste_ref2m or humcste_ref4m depending on zmaxh 
 
 # PREF_SOIL_VEG ([-]        ) :  The soil tile number for each vegetation 	{OK_SECHIBA or OK_STOMATE}
@@ -403,65 +439,128 @@
 WMAX_VEG =  150., 150., 150., 150., 150., 150., 150.,150., 150., 150., 150., 150., 150. 
 
-# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy 	{OK_SECHIBA OR HYDROL_CWRR}
-PERCENT_THROUGHFALL_PFT =  30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 
-
-# SNOWA_AGED ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow) 	{OK_SECHIBA}
-SNOWA_AGED =  0.35, 0., 0., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.18, 0.18, 0.18, 0.18 
-
-# SNOWA_DEC ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow 	{OK_SECHIBA}
-SNOWA_DEC =  0.45, 0.,  0., 0.06, 0.06, 0.11, 0.06, 0.11, 0.11, 0.52,0.52, 0.52, 0.52 
+# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy. Default value depend on run mode. 	{OK_SECHIBA}
+PERCENT_THROUGHFALL_PFT =  Case offline [0. 0. 0....] else [30. 30. 30.....] 
+
+# SNOWA_AGED_VIS ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), visible albedo 	{OK_SECHIBA}
+SNOWA_AGED_VIS =  0.74, 0.0, 0.0, 0.08, 0.24, 0.07, 0.18, 0.18, 0.33, 0.57, 0.57, 0.57, 0.57 
+
+# SNOWA_AGED_NIR ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), near infrared albedo 	{OK_SECHIBA}
+SNOWA_AGED_NIR =  0.50, 0.0, 0.0, 0.10, 0.37, 0.08, 0.16, 0.17, 0.27, 0.44, 0.44, 0.44, 0.44   
+
+# SNOWA_DEC_VIS ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, visible albedo 	{OK_SECHIBA}
+SNOWA_DEC_VIS =  0.21, 0.0, 0.0, 0.14, 0.08, 0.17, 0.05, 0.06, 0.09, 0.15, 0.15, 0.15, 0.15  
+
+# SNOWA_DEC_NIR ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, near infrared albedo 	{OK_SECHIBA}
+SNOWA_DEC_NIR =  0.13, 0.0, 0.0, 0.10, 0.10, 0.16, 0.04, 0.07, 0.08, 0.12, 0.12, 0.12, 0.12 
 
 # ALB_LEAF_VIS ([-]) :  leaf albedo of vegetation type, visible albedo 	{OK_SECHIBA}
-ALB_LEAF_VIS =  .00, .04, .06, .06, .06,.06, .06, .06, .06, .10, .10, .10, .10 
+ALB_LEAF_VIS =  0.00, 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.06, 0.06, 0.06, 0.06 
 
 # ALB_LEAF_NIR ([-]) :  leaf albedo of vegetation type, near infrared albedo 	{OK_SECHIBA}
-ALB_LEAF_NIR =  .00, .20, .22, .22, .22,.22, .22, .22, .22, .30, .30, .30, .30  
-
-# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{DIFFUCO_OK_INCA}
+ALB_LEAF_NIR =  0.00, 0.23, 0.18, 0.18, 0.20, 0.24, 0.15, 0.26, 0.20, 0.24, 0.27, 0.28, 0.26 
+
+# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{CHEMISTRY_BVOC}
 ISO_ACTIVITY =  0.5, 1.5, 1.5, 0.5 
 
-# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{DIFFUCO_OK_INCA}
+# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{CHEMISTRY_BVOC}
 METHANOL_ACTIVITY =  1., 1., 0.5, 0.5 
 
-# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 8., 8., 16., 24., 5., 5. 
-
-# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MONOTERPENE =  0., 0.8, 0.8, 2.4, 1.2, 0.8, 2.4, 2.4, 2.4, 0.8, 1.2, 0.2, 0.2 
-
-# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{DIFFUCO_OK_INCA }
+# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 18., 0.5, 12., 18., 5., 5. 
+
+# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MONOTERPENE =  0., 2.0, 2.0, 1.8, 1.4, 1.6, 1.8, 1.4, 1.8, 0.8, 0.8,  0.22, 0.22 
+
+# C_LDF_MONO  ([]) :  Monoterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_MONO  =  0.6 
+
+# C_LDF_SESQ  ([]) :  Sesquiterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_SESQ  =  0.5 
+
+# C_LDF_METH  ([]) :  Methanol fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_METH  =  0.8 
+
+# C_LDF_ACET  ([]) :  Acetone fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_ACET  =  0.2 
+
+# EM_FACTOR_APINENE  ([ugC/g/h] ) :  Alfa pinene  emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_APINENE  =  0., 1.35, 1.35, 0.85, 0.95, 0.75, 0.85, 0.60, 1.98, 0.30, 0.30, 0.09, 0.09 
+
+# EM_FACTOR_BPINENE ([ugC/g/h] ) :  Beta pinene  emission factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_BPINENE =  0., 0.30, 0.30, 0.35, 0.25, 0.20, 0.35, 0.12, 0.45, 0.16, 0.12, 0.05, 0.05 
+
+# EM_FACTOR_LIMONENE ([ugC/g/h] ) :  Limonene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_LIMONENE =  0., 0.25, 0.25, 0.20, 0.25, 0.14, 0.20, 0.135, 0.11, 0.19, 0.42, 0.03, 0.03 
+
+# EM_FACTOR_MYRCENE ([ugC/g/h] ) :  Myrcene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_MYRCENE =  0., 0.20, 0.20, 0.12, 0.11, 0.065, 0.12, 0.036, 0.075, 0.08,  0.085, 0.015, 0.015 
+
+# EM_FACTOR_SABINENE ([ugC/g/h] ) :  Sabinene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_SABINENE =  0., 0.20, 0.20, 0.12, 0.17, 0.70, 0.12, 0.50, 0.09, 0.085, 0.075, 0.02, 0.02 
+
+# EM_FACTOR_CAMPHENE  ([ugC/g/h] ) :  Camphene  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_CAMPHENE  =  0., 0.15, 0.15, 0.10, 0.10, 0.01, 0.10, 0.01, 0.07, 0.07, 0.08, 0.01, 0.01 
+
+# EM_FACTOR_3CARENE  ([ugC/g/h] ) :  3-Carene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_3CARENE  =  0., 0.13, 0.13, 0.42, 0.02, 0.055, 0.42,0.025, 0.125, 0.085, 0.085, 0.065, 0.065 
+
+# EM_FACTOR_TBOCIMENE ([ugC/g/h] ) :  T-beta-ocimene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_TBOCIMENE =  0., 0.25, 0.25, 0.13, 0.09, 0.26, 0.13, 0.20, 0.085, 0.18, 0.18, 0.01, 0.01 
+
+# EM_FACTOR_OTHERMONOT ([ugC/g/h] ) :  Other monoterpenes  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_OTHERMONOT =  0., 0.17, 0.17, 0.11, 0.11, 0.125, 0.11, 0.274, 0.01, 0.15, 0.155, 0.035, 0.035 
+
+# EM_FACTOR_SESQUITERP  ([ugC/g/h] ) :  Sesquiterpenes  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_SESQUITERP  =  0., 0.45, 0.45, 0.13, 0.3, 0.36, 0.15, 0.3, 0.25, 0.6, 0.6, 0.08, 0.08 
+
+# C_BETA_MONO  ([]) :  Monoterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_MONO  =  0.1 
+
+# C_BETA_SESQ  ([]) :  Sesquiterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_SESQ  =  0.17 
+
+# C_BETA_METH  ([]) :  Methanol temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_METH  =  0.08 
+
+# C_BETA_ACET  ([]) :  Acetone temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_ACET  =  0.1 
+
+# C_BETA_OXYVOC  ([]) :  Other oxygenated BVOC temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_OXYVOC  =  0.13 
+
+# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{CHEMISTRY_BVOC }
 EM_FACTOR_ORVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{DIFFUCO_OK_INCA}
+# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{CHEMISTRY_BVOC}
 EM_FACTOR_OVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MBO =  0., 0., 0., 20.0, 0., 0., 0., 0., 0., 0., 0., 0., 0. 
-
-# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_METHANOL =  0., 0.6, 0.6, 1.8, 0.9, 0.6, 1.8, 1.8, 1.8, 0.6, 0.9, 2., 2. 
-
-# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETONE =  0., 0.29, 0.29, 0.87, 0.43, 0.29, 0.87, 0.87, 0.87, 0.29, 0.43, 0.07, 0.07  
-
-# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{DIFFUCO_OK_INCA}
-EM_FACTOR_ACETAL =  0., 0.1, 0.1, 0.3, 0.15, 0.1, 0.3, 0.3, 0.3, 0.1, 0.15, 0.025, 0.025 
-
-# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_FORMAL =  0., 0.07, 0.07, 0.2, 0.1, 0.07, 0.2, 0.2, 0.2, 0.07, 0.1, 0.017, 0.017 
-
-# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETIC =  0., 0.002, 0.002, 0.006, 0.003, 0.002, 0.006, 0.006, 0.006, 0.002, 0.003, 0.0005, 0.0005 
-
-# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_FORMIC =  0., 0.01, 0.01, 0.03, 0.015, 0.01, 0.03, 0.03, 0.03, 0.01, 0.015, 0.0025, 0.0025  
-
-# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MBO =  0., 2.e-5, 2.e-5, 1.4, 2.e-5, 2.e-5, 0.14, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5 
+
+# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_METHANOL =  0., 0.8, 0.8, 1.8, 0.9, 1.9, 1.8, 1.8, 1.8, 0.7, 0.9, 2., 2. 
+
+# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETONE =  0., 0.25, 0.25, 0.3, 0.2, 0.33, 0.3, 0.25, 0.25, 0.2, 0.2, 0.08, 0.08 
+
+# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_ACETAL =  0., 0.2, 0.2, 0.2, 0.2, 0.25, 0.25, 0.16, 0.16, 0.12, 0.12, 0.035, 0.02 
+
+# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_FORMAL =  0., 0.04, 0.04, 0.08, 0.04, 0.04, 0.04, 0.04, 0.04, 0.025, 0.025, 0.013, 0.013 
+
+# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETIC =  0., 0.025, 0.025,0.025,0.022,0.08,0.025,0.022,0.013,0.012,0.012,0.008,0.008 
+
+# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_FORMIC =  0., 0.015, 0.015, 0.02, 0.02, 0.025, 0.025, 0.015, 0.015,0.010,0.010,0.008,0.008 
+
+# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_WET =  0., 2.6, 0.06, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.36, 0.36, 0.36, 0.36 
 
-# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_DRY =  0., 8.60, 0.40, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 2.65, 2.65, 2.65, 2.65 
 
-# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{DIFFUCO_OK_INCA }
+# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{CHEMISTRY_BVOC }
 LARCH =  0., 0.015, 0.015, 0.003, 0.005, 0.005, 0.003, 0.005, 0.003, 0.005, 0.005, 0.008, 0.008 
 
@@ -469,9 +568,18 @@
 SLA =  1.5E-2, 1.53E-2, 2.6E-2, 9.26E-3, 2E-2, 2.6E-2, 9.26E-3, 2.6E-2, 1.9E-2, 2.6E-2, 2.6E-2, 2.6E-2, 2.6E-2 
 
+# AVAILABILITY_FACT  ([-]   ) :  Calculate dynamic mortality in lpj_gap, pft dependent parameter 	{OK_STOMATE }
+AVAILABILITY_FACT  =  -9999., 0.14, 0.14, 0.10, 0.10, 0.10, 0.05, 0.05, 0.05, -9999., -9999., -9999., -9999.  
+
+# R0  ([-]    ) :  Standard root allocation  	{OK_STOMATE }
+R0  =  -9999., .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
+
 # S0  ([-]    ) :  Standard sapwood allocation  	{OK_STOMATE }
 S0  =  -9999., .25, .25, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
 
+# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE}
+FRAC_GROWTHRESP =  -9999., 0.35, 0.35, 0.28, 0.28, 0.28, 0.35, 0.35, 0.35, 0.28, 0.28, 0.28, 0.28 
+
 # MAINT_RESP_SLOPE_C ([-]) :  slope of maintenance respiration coefficient (1/K), constant c of aT^2+bT+c , tabulated 	{OK_STOMATE}
-MAINT_RESP_SLOPE_C =  -9999., .20, .20, .16, .16, .16, .16, .16, .16, .16, .12, .16, .12  
+MAINT_RESP_SLOPE_C =  -9999., 0.12, 0.12, 0.16, 0.16, 0.16, 0.25, 0.25, 0.25, 0.16, 0.12, 0.16, 0.12 
 
 # MAINT_RESP_SLOPE_B ([-]) :  slope of maintenance respiration coefficient (1/K), constant b of aT^2+bT+c , tabulated 	{OK_STOMATE}
@@ -520,6 +628,9 @@
 COEFF_LCCHANGE_100 =  -9999., 0., 0., 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0., 0.104, 0. 
 
+# LAI_MAX_TO_HAPPY ([-]) :  threshold of LAI below which plant uses carbohydrate reserves 	{OK_STOMATE}
+LAI_MAX_TO_HAPPY =  -9999., .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5  
+
 # LAI_MAX ([m^2/m^2]) :  maximum LAI, PFT-specific 	{OK_STOMATE}
-LAI_MAX =  -9999., 7., 7., 5., 5., 5., 4.5, 4.5, 3.0, 2.5, 2.5, 5.,5.  
+LAI_MAX =  -9999., 7.0, 5.0, 5.0, 4.0, 5.0, 3.5, 4.0, 3.0, 2.5, 2.0, 5.0, 5.0 
 
 # PHENO_TYPE ([-]) :  type of phenology, 0 	{OK_STOMATE}
@@ -535,4 +646,7 @@
 PHENO_GDD_CRIT_A =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.03125,  0., 0., 0. 
 
+# PHENO_MOIGDD_T_CRIT ([C]) :  Average temperature threashold for C4 grass used in pheno_moigdd 	{OK_STOMATE}
+PHENO_MOIGDD_T_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 22.0, -9999., -9999. 
+
 # NGD_CRIT ([days]) :  critical ngd, tabulated. Threshold -5 degrees 	{OK_STOMATE}
 NGD_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0., -9999., -9999., -9999., -9999., -9999. 
@@ -550,4 +664,7 @@
 TAU_SAP =  -9999., 730., 730., 730., 730., 730., 730., 730., 730., -9999., -9999., -9999., -9999. 
 
+# TAU_LEAFINIT ([days]) :  time to attain the initial foliage using the carbohydrate reserve 	{OK_STOMATE}
+TAU_LEAFINIT =  -9999., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10. 
+
 # TAU_FRUIT ([days]) :  fruit lifetime 	{OK_STOMATE}
 TAU_FRUIT =  -9999., 90., 90., 90., 90., 90., 90., 90., 90., -9999., -9999., -9999., -9999. 
@@ -604,4 +721,7 @@
 GDD_SENESCENCE =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 950., 4000. 
 
+# ALWAYS_INIT ([BOOLEAN]) :  Take carbon from atmosphere if carbohydrate reserve too small 	{OK_STOMATE}
+ALWAYS_INIT =  y, y, y, y, y, y, y, y, y, y, n, y, y 
+
 # RESIDENCE_TIME ([years]) :  residence time of trees 	{OK_DGVM and NOT(LPJ_GAP_CONST_MORT)}
 RESIDENCE_TIME =  -9999., 30.0, 30.0, 40.0, 40.0, 40.0, 80.0, 80.0, 80.0, 0.0, 0.0, 0.0, 0.0  
@@ -619,6 +739,6 @@
 TREAT_EXPANSION =  n 
 
-# LPJ_GAP_CONST_MORT ([FLAG]) :  prescribe mortality if not using DGVM? 	{OK_STOMATE}
-LPJ_GAP_CONST_MORT =  y 
+# LPJ_GAP_CONST_MORT ([FLAG]) :  Constant mortality 	{OK_STOMATE AND NOT OK_DGVM}
+LPJ_GAP_CONST_MORT =  y/n depending on OK_DGVM 
 
 # HARVEST_AGRI ([FLAG]) :  Harvest model for agricultural PFTs. 	{OK_STOMATE }
@@ -626,5 +746,5 @@
 
 # FIRE_DISABLE ([FLAG]) :  no fire allowed 	{OK_STOMATE }
-FIRE_DISABLE =  n 
+FIRE_DISABLE =  y 
 
 # SPINUP_ANALYTIC (BOOLEAN    ) :  Activation of the analytic resolution of the spinup. 	{OK_STOMATE}
@@ -643,26 +763,17 @@
 LAI_MAP =  n 
 
-# SLOWPROC_LAI_OLD_INTERPOL ([FLAG]) :  Flag to use old "interpolation" of LAI 	{LAI_MAP}
-SLOWPROC_LAI_OLD_INTERPOL =  n 
-
-# LAND_USE ([FLAG]) :  Read a land_use vegetation map 	{OK_SECHIBA or OK_STOMATE}
-LAND_USE =  y 
-
-# VEGET_REINIT ([FLAG] ) :  booleen to indicate that a new LAND USE file will be used. 	{LAND_USE}
+# VEGET_REINIT ([FLAG] ) :  Reset veget_year counter (obsolet) 	{VEGET_UPDATE > 0Y}
 VEGET_REINIT =  y 
 
-# LAND_COVER_CHANGE ([FLAG] ) :  treat land use modifications 	{LAND_USE}
-LAND_COVER_CHANGE =  n 
-
-# VEGET_YEAR ([FLAG] ) :  Year of the land_use vegetation map to be read 	{LAND_USE}
+# VEGETMAP_RESET ([FLAG] ) :  Flag to change vegetation map without activating LAND USE change for carbon fluxes and reset carbon related variables to zero 	{}
+VEGETMAP_RESET =  n 
+
+# VEGET_YEAR ([FLAG] ) :  Year of the vegetation map to be read 	{}
 VEGET_YEAR =  1 
 
-# SLOWPROC_VEGET_OLD_INTERPOL ([FLAG] ) :  Flag to use old "interpolation" of vegetation map. 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-SLOWPROC_VEGET_OLD_INTERPOL =  n 
-
-# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA or HYDROL_CWRR}
+# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA}
 MAXMASS_SNOW =  3000. 
 
-# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA or HYDROL_CWRR}
+# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA}
 SNOWCRI =  1.5 
 
@@ -674,8 +785,20 @@
 
 # SNOW_TRANS ([m]   ) :  Transformation time constant for snow 	{OK_SECHIBA}
-SNOW_TRANS =  0.3 
-
-# Z0_OVER_HEIGHT ([-]   ) :  to get z0 from height  	{OK_SECHIBA }
-Z0_OVER_HEIGHT =  1/16. 
+SNOW_TRANS =  0.2 
+
+# OK_NUDGE_MC ([FLAG]) :  Activate nudging of soil moisture 	{}
+OK_NUDGE_MC =  n 
+
+# NUDGE_TAU_MC ([-]) :  Relaxation time for nudging of soil moisture expressed in fraction of the day 	{OK_NUDGE_MC}
+NUDGE_TAU_MC =  1 
+
+# OK_NUDGE_SNOW ([FLAG]) :  Activate nudging of snow variables 	{}
+OK_NUDGE_SNOW =  n 
+
+# NUDGE_TAU_SNOW ([-]) :  Relaxation time for nudging of snow variables 	{OK_NUDGE_SNOW}
+NUDGE_TAU_SNOW =  1 
+
+# NUDGE_INTERPOL_WITH_XIOS ([FLAG]) :  Activate reading and interpolation with XIOS for nudging fields 	{OK_NUDGE_MC or OK_NUDGE_SNOW}
+NUDGE_INTERPOL_WITH_XIOS =  n 
 
 # HEIGHT_DISPLACEMENT ([m]  ) :  Magic number which relates the height to the displacement height. 	{OK_SECHIBA }
@@ -689,5 +812,5 @@
 
 # TCST_SNOWA ([days]) :  Time constant of the albedo decay of snow 	{OK_SECHIBA }
-TCST_SNOWA =  5.0  
+TCST_SNOWA =  10.0  
 
 # SNOWCRI_ALB ([cm]  ) :  Critical value for computation of snow albedo 	{OK_SECHIBA}
@@ -724,6 +847,6 @@
 ALB_BARE_MODEL =  n 
 
-# Z0CDRAG_AVE ([FLAG]) :  Average method for z0 	{OK_SECHIBA}
-Z0CDRAG_AVE =  y 
+# ALB_BG_MODIS ([FLAG]) :  Read bare soil albedo from file with background MODIS data 	{OK_SECHIBA}
+ALB_BG_MODIS =  y 
 
 # IMPOSE_AZE ([FLAG]) :  Should the surface parameters be prescribed 	{OK_SECHIBA}
@@ -745,4 +868,103 @@
 CONDVEG_EMIS =  1.0 
 
+# ROUGH_DYN ([FLAG]) :  Account for a dynamic roughness height 	{OK_SECHIBA}
+ROUGH_DYN =  y 
+
+# C1 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C1 =  0.32 
+
+# C2 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C2 =  0.264 
+
+# C3 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C3 =  15.1 
+
+# Cdrag_foliage ([-] ) :  Drag coefficient of the foliage 	{ROUGH_DYN}
+Cdrag_foliage =  0.2 
+
+# Ct ([-] ) :  Heat transfer coefficient of the leaf 	{ROUGH_DYN}
+Ct =  0.01 
+
+# Prandtl ([-] ) :  Prandtl number used in the calculation of Ct* 	{ROUGH_DYN}
+Prandtl =  0.71 
+
+# xansmax  ([-] ) :  maximum snow albedo 	{OK_SECHIBA}
+xansmax  =  0.85 
+
+# xansmin  ([-] ) :  minimum snow albedo 	{OK_SECHIBA}
+xansmin  =  0.50 
+
+# xans_todry  ([S-1] ) :  albedo decay rate for the dry snow  	{OK_SECHIBA}
+xans_todry  =  0.008 
+
+# xans_t  ([S-1] ) :  albedo decay rate for the wet snow  	{OK_SECHIBA}
+xans_t  =  0.24 
+
+# xrhosmax  ([-] ) :  maximum snow density  	{OK_SECHIBA}
+xrhosmax  =  750 
+
+# xwsnowholdmax1 ([-] ) :  snow holding capacity 1 	{OK_SECHIBA}
+xwsnowholdmax1 =  0.03 
+
+# xwsnowholdmax2 ([-] ) :  snow holding capacity 2 	{OK_SECHIBA}
+xwsnowholdmax2 =  0.10 
+
+# xsnowrhohold  ([kg/m3] ) :  snow density  	{OK_SECHIBA}
+xsnowrhohold  =  200.0 
+
+# ZSNOWTHRMCOND1 ([W/m/K] ) :  Thermal conductivity Coef 1 	{OK_SECHIBA}
+ZSNOWTHRMCOND1 =  0.02  
+
+# ZSNOWTHRMCOND2 ([W m5/(kg2 K)] ) :  Thermal conductivity Coef 2 	{OK_SECHIBA}
+ZSNOWTHRMCOND2 =  2.5E-6 
+
+# ZSNOWTHRMCOND_AVAP ([W/m/K] ) :  Thermal conductivity Coef 1 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_AVAP =  -0.06023 
+
+# ZSNOWTHRMCOND_BVAP ([W/m] ) :  Thermal conductivity Coef 2 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_BVAP =  -2.5425 
+
+# ZSNOWTHRMCOND_CVAP ([K] ) :  Thermal conductivity Coef 3 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_CVAP =  -289.99 
+
+# ZSNOWCMPCT_RHOD ([kg/m3]) :  Snow compaction coefficent 	{OK_SECHIBA}
+ZSNOWCMPCT_RHOD =  150.0 
+
+# ZSNOWCMPCT_ACM ([1/s]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_ACM =  2.8e-6 
+
+# ZSNOWCMPCT_BCM ([1/K]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_BCM =  0.04 
+
+# ZSNOWCMPCT_CCM ([m3/kg] ) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_CCM =  460. 
+
+# ZSNOWCMPCT_V0 ([Pa/s]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_V0 =  3.7e7 
+
+# ZSNOWCMPCT_VT ([1/K]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VT =  0.081 
+
+# ZSNOWCMPCT_VR ([m3/kg]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VR =  0.018 
+
+# CB ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CB =  5.0 
+
+# CC ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CC =  5.0 
+
+# CD ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CD =  5.0 
+
+# RAYT_CSTE ([W.m^{-2}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+RAYT_CSTE =  125 
+
+# DEFC_PLUS ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_PLUS =  23.E-3 
+
+# DEFC_MULT ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_MULT =  1.5 
+
 # NLAI ([-]  ) :  Number of LAI levels 	{OK_SECHIBA}
 NLAI =  20 
@@ -755,12 +977,21 @@
 
 # DOWNREGULATION_CO2 ([FLAG]   ) :  Activation of CO2 downregulation 	{OK_SECHIBA}
-DOWNREGULATION_CO2 =  n  
+DOWNREGULATION_CO2 =  y 
 
 # DOWNREGULATION_CO2_BASELEVEL ([ppm]   ) :  CO2 base level 	{OK_SECHIBA }
-DOWNREGULATION_CO2_BASELEVEL =  280. 
+DOWNREGULATION_CO2_BASELEVEL =  380. 
+
+# GB_REF ([s m-1]   ) :  Leaf bulk boundary layer resistance 	{}
+GB_REF =  1./25. 
 
 # CLAYFRACTION_DEFAULT ([-]   ) :  default fraction of clay 	{OK_SECHIBA }
 CLAYFRACTION_DEFAULT =  0.2  
 
+# SANDFRACTION_DEFAULT ([-]   ) :  default fraction of sand 	{OK_SECHIBA }
+SANDFRACTION_DEFAULT =  0.4  
+
+# SILTFRACTION_DEFAULT ([-]   ) :  default fraction of silt 	{OK_SECHIBA }
+SILTFRACTION_DEFAULT =  0.4  
+
 # MIN_VEGFRAC  ([-]  ) :  Minimal fraction of mesh a vegetation type can occupy  	{OK_SECHIBA }
 MIN_VEGFRAC  =  0.001  
@@ -769,8 +1000,8 @@
 STEMPDIAG_BID  =  280. 
 
-# LAI_LEVEL_DEPTH ([-]  ) :   	{OK_CO2}
+# LAI_LEVEL_DEPTH ([-]  ) :   	{}
 LAI_LEVEL_DEPTH =  0.15 
 
-# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{OK_CO2}
+# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{}
 Oi =  210000. 
 
@@ -796,7 +1027,4 @@
 FIREFRAC_COEFF  =  0.45, 0.8, 0.6, 0.13 
 
-# AVAILABILITY_FACT  ([-]   ) :   	{OK_STOMATE }
-AVAILABILITY_FACT  =  0.1 
-
 # REF_GREFF ([1/year]  ) :  Asymptotic maximum mortality rate 	{OK_STOMATE }
 REF_GREFF =  0.035 
@@ -805,7 +1033,4 @@
 OK_MINRES =  y 
 
-# TAU_LEAFINIT ([days]  ) :  time to attain the initial foliage using the carbohydrate reserve  	{OK_STOMATE }
-TAU_LEAFINIT =  10. 
-
 # RESERVE_TIME_TREE  ([days]    ) :  maximum time during which reserve is used (trees)  	{OK_STOMATE }
 RESERVE_TIME_TREE  =  30. 
@@ -814,7 +1039,4 @@
 RESERVE_TIME_GRASS  =  20.  
 
-# R0 ([-]  ) :  Standard root allocation  	{OK_STOMATE }
-R0 =  0.3  
-
 # F_FRUIT ([-]    ) :  Standard fruit allocation 	{OK_STOMATE }
 F_FRUIT =  0.1  
@@ -832,7 +1054,4 @@
 Z_NITROGEN =  0.2  
 
-# LAI_MAX_TO_HAPPY ([-]  ) :   	{OK_STOMATE }
-LAI_MAX_TO_HAPPY =  0.5  
-
 # NLIM_TREF  ([C]  ) :   	{OK_STOMATE }
 NLIM_TREF  =  25.  
@@ -877,7 +1096,4 @@
 MASS_RATIO_HEART_SAP =  3. 
 
-# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE }
-FRAC_GROWTHRESP =  0.28 
-
 # TAU_HUM_MONTH ([days]  ) :  time scales for phenology and other processes 	{OK_STOMATE }
 TAU_HUM_MONTH =  20.  
@@ -1012,4 +1228,7 @@
 MOIST_COEFF =  1.1, 2.4, 0.29 
 
+# MOISTCONT_MIN ([-]) :  minimum soil wetness to limit the heterotrophic respiration 	{OK_STOMATE }
+MOISTCONT_MIN =  0.25 
+
 # FRAC_TURNOVER_DAILY  ([-]) :   	{OK_STOMATE }
 FRAC_TURNOVER_DAILY  =  0.55 
@@ -1018,7 +1237,4 @@
 TAX_MAX =  0.8 
 
-# ALWAYS_INIT ([-]   ) :  take carbon from atmosphere if carbohydrate reserve too small?  	{OK_STOMATE }
-ALWAYS_INIT =  n  
-
 # MIN_GROWTHINIT_TIME  ([days]  ) :  minimum time since last beginning of a growing season 	{OK_STOMATE }
 MIN_GROWTHINIT_TIME  =  300.  
@@ -1073,8 +1289,8 @@
 
 # CARBON_TAU_ISLOW ([days]) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_ISLOW =  5.48 
+CARBON_TAU_ISLOW =  7.0 
 
 # CARBON_TAU_IPASSIVE ([days] ) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_IPASSIVE =  241. 
+CARBON_TAU_IPASSIVE =  300. 
 
 # FLUX_TOT_COEFF ([days] ) :  	{OK_STOMATE }
@@ -1084,7 +1300,4 @@
 NEW_TURNOVER_TIME_REF =  20.  
 
-# DT_TURNOVER_TIME  ([days]  ) :   	{OK_STOMATE }
-DT_TURNOVER_TIME  =  10. 
-
 # LEAF_AGE_CRIT_TREF ([days]  ) :   	{OK_STOMATE }
 LEAF_AGE_CRIT_TREF =  20.  
@@ -1174,6 +1387,9 @@
 EVERYWHERE_INIT =  0.05  
 
-# THERMOSOIL_NBLEV ((-)) :  Number of soil level 	{}
-THERMOSOIL_NBLEV =  7 
+# PRINTLEV ([0, 1, 2, 3, 4]) :  Print level for text output 	{}
+PRINTLEV =  2 
+
+# PRINTLEV_modname ([0, 1, 2, 3, 4]) :  Specific print level of text output for the module "modname". Default as PRINTLEV. 	{}
+PRINTLEV_modname =  PRINTLEV 
 
 # DRY_SOIL_HEAT_CAPACITY ([J.m^{-3}.K^{-1}] ) :  Dry soil Heat capacity of soils 	{OK_SECHIBA }
@@ -1195,40 +1411,49 @@
 SNOW_DENSITY =  330.0 
 
-# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
+# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{}
 NOBIO_WATER_CAPAC_VOLUMETRI =  150. 
+
+# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
+SECHIBA_QSINT  =  0.02 
+
+# OK_FREEZE ([FLAG]) :  Activate the complet soil freezing scheme 	{OK_SECHIBA }
+OK_FREEZE =  TRUE 
+
+# READ_REFTEMP ([FLAG]) :  Initialize soil temperature using climatological temperature 	{}
+READ_REFTEMP =  True/False depening on OK_FREEZE 
+
+# OK_FREEZE_THERMIX ([FLAG]) :  Activate thermal part of the soil freezing scheme 	{}
+OK_FREEZE_THERMIX =  True if OK_FREEZE else false 
+
+# OK_ECORR ([FLAG]) :  Energy correction for freezing 	{OK_FREEZE_THERMIX}
+OK_ECORR =  True if OK_FREEZE else false 
+
+# OK_FREEZE_THAW_LATENT_HEAT ([FLAG]) :  Activate latent heat part of the soil freezing scheme 	{}
+OK_FREEZE_THAW_LATENT_HEAT =  FALSE  
+
+# POROS ([-] ) :  Soil porosity  	{OK_SECHIBA}
+POROS =  0.41 
+
+# fr_dT ([K] ) :  Freezing window     	{OK_SECHIBA}
+fr_dT =  2.0 
+
+# OK_FREEZE_CWRR ([FLAG]) :  CWRR freezing scheme by I. Gouttevin 	{}
+OK_FREEZE_CWRR =  True if OK_FREEZE else false 
+
+# OK_THERMODYNAMICAL_FREEZING ([FLAG]) :  Calculate frozen fraction thermodynamically  	{OK_FREEZE_CWRR}
+OK_THERMODYNAMICAL_FREEZING =  True 
+
+# CHECK_CWRR ([FLAG]) :  Calculate diagnostics to check CWRR water balance 	{}
+CHECK_CWRR =  n 
+
+# VEGET_UPDATE ([years]) :  Update vegetation frequency: 0Y or 1Y 	{}
+VEGET_UPDATE =  0Y 
+
+# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
+SECHIBA_ZCANOP =  0.5 
 
 # SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
 SECHIBA_QSINT  =  0.1 
 
-# CHOISNEL_DIFF_MIN ([kg/m^2/dt]) :  Diffusion constant for the slow regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MIN =  0.001 
-
-# CHOISNEL_DIFF_MAX ([kg/m^2/dt]) :  Diffusion constant for the fast regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MAX =  0.1 
-
-# CHOISNEL_DIFF_EXP ([-]) :  The exponential in the diffusion law 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_EXP =  1.5 
-
-# CHOISNEL_RSOL_CSTE ([s/m^2]) :  Constant in the computation of resistance for bare  soil evaporation  	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_RSOL_CSTE =  33.E3 
-
-# HCRIT_LITTER ([m]) :  Scaling depth for litter humidity 	{OK_SECHIBA and .NOT.(HYDROL_CWRR) }
-HCRIT_LITTER =  0.08  
-
-# SECHIBA_DAY ([days]) :  Time within the day simulated 	{OK_SECHIBA}
-SECHIBA_DAY =  0.0 
-
-# VEGET_UPDATE ([years]) :  Update vegetation frequency 	{LAND_USE}
-VEGET_UPDATE =  0Y 
-
-# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
-SECHIBA_ZCANOP =  0.5 
-
-# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
-SECHIBA_QSINT  =  0.1 
-
-# DT_SLOW ([seconds]) :  Time step of STOMATE and other slow processes 	{OK_STOMATE}
-DT_SLOW =  86400. 
-
 # SECHIBA_VEGMAX ([-]) :  Maximum vegetation distribution within the mesh (0-dim mode) 	{IMPOSE_VEG}
 SECHIBA_VEGMAX =  0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0 
@@ -1246,4 +1471,7 @@
 CLAY_FRACTION =  0.2 
 
+# SAND_FRACTION ([-] ) :  Fraction of the clay fraction (0-dim mode) 	{IMPOSE_VEG and IMPOSE_SOIL}
+SAND_FRACTION =  0.4 
+
 # REINF_SLOPE ([-]) :  Slope coef for reinfiltration  	{IMPOSE_VEG}
 REINF_SLOPE =  0.1 
@@ -1255,7 +1483,4 @@
 GET_SLOPE =  n 
 
-# LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(LAI_MAP)}
-LAI_FILE =  lai2D.nc 
-
 # LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAI_MAP}
 LAI_FILE =  lai2D.nc 
@@ -1264,18 +1489,6 @@
 RENORM_LAI =  n 
 
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAND_USE}
+# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{}
 VEGETATION_FILE =  PFTmap.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
 
 # SOILCLASS_FILE ([FILE]) :  Name of file from which soil types are read 	{NOT(IMPOSE_VEG)}
@@ -1288,107 +1501,101 @@
 TOPOGRAPHY_FILE =  cartepente2d_15min.nc 
 
+# WOODHARVEST_FILE ([FILE]) :  Name of file from which the wood harvest will be read 	{DO_WOOD_HARVEST}
+WOODHARVEST_FILE =  woodharvest.nc 
+
 # SOILALB_FILE ([FILE]) :  Name of file from which the bare soil albedo 	{NOT(IMPOSE_AZE)}
 SOILALB_FILE =  soils_param.nc 
 
+# ALB_BG_FILE ([FILE]) :  Name of file from which the background albedo is read  	{ALB_BG_MODIS}
+ALB_BG_FILE =  alb_bg.nc 
+
 # CDRAG_FROM_GCM ([FLAG]) :  Keep cdrag coefficient from gcm. 	{OK_SECHIBA}
 CDRAG_FROM_GCM =  y 
 
-# DIFFUCO_LEAFCI ([ppm]) :  Initial leaf CO2 level if not found in restart 	{OK_SECHIBA}
-DIFFUCO_LEAFCI =  233. 
-
-# ALLOW_WEATHERGEN ([FLAG]) :  Allow weather generator to create data 	{}
-ALLOW_WEATHERGEN =  n 
-
-# FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
-FORCING_FILE =  forcing_file.nc 
-
-# HYDROL_OK_HDIFF ([FLAG]) :  do horizontal diffusion? 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)  }
-HYDROL_OK_HDIFF =  n 
-
-# HYDROL_SNOW ([kg/m^2]) :  Initial snow mass if not found in restart 	{OK_SECHIBA}
-HYDROL_SNOW =  0.0 
-
-# HYDROL_SNOWAGE ([days]) :  Initial snow age if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOWAGE =  0.0 
-
-# HYDROL_SNOW_NOBIO ([m]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO =  0.0 
-
-# HYDROL_SNOW_NOBIO_AGE ([days]) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO_AGE =  0.0 
-
-# HYDROL_HUMR ([-]) :  Initial soil moisture stress if not found in restart 	{OK_SECHIBA }
-HYDROL_HUMR =  1.0 
-
-# HYDROL_BQSB ([kg/m^2]) :  Initial restart deep soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_BQSB =  999999.  
-
-# HYDROL_GQSB ([kg/m^2]) :  Initial upper soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_GQSB =  0.0 
-
-# HYDROL_DSG ([m]) :  Initial upper reservoir depth if not found in restart 	{OK_SECHIBA }
-HYDROL_DSG =  0.0 
-
-# HYDROL_QSV ([kg/m^2]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA }
-HYDROL_QSV =  0.0 
-
-# HYDROL_DSP ([m]) :  Initial dry soil above upper reservoir if not found in restart 	{OK_SECHIBA }
-HYDROL_DSP =  999999. 
-
-# HYDROL_TAU_HDIFF ([seconds]) :  time scale (s) for horizontal diffusion of water 	{HYDROL_OK_HDIFF}
-HYDROL_TAU_HDIFF =  86400. 
-
-# CHECK_CWRR ([FLAG]) :  Should we check detailed CWRR water balance ? 	{HYDROL_CWRR}
-CHECK_CWRR =  n 
-
-# DO_PONDS ([FLAG]) :  Should we include ponds  	{HYDROL_CWRR}
+# N_FERTIL_FILE (- ) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# N_FERTIL_FILE (-) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# ENERBIL_TSURF (Kelvin [K]) :  Initial temperature if not found in restart 	{OK_SECHIBA}
+ENERBIL_TSURF =  280. 
+
+# ENERBIL_EVAPOT () :  Initial Soil Potential Evaporation 	{OK_SECHIBA       }
+ENERBIL_EVAPOT =  0.0 
+
+# BEDROCK_FLAG ([FLAG]) :  Flag to consider bedrock at deeper layers. 	{}
+BEDROCK_FLAG =  0 
+
+# THERMOSOIL_TPRO (Kelvin [K]) :  Initial soil temperature profile if not found in restart 	{OK_SECHIBA}
+THERMOSOIL_TPRO =  280. 
+
+# SOIL_REFTEMP_FILE ([FILE]) :  File with climatological soil temperature 	{READ_REFTEMP}
+SOIL_REFTEMP_FILE =  reftemp.nc 
+
+# DO_PONDS ([FLAG]) :  Should we include ponds  	{}
 DO_PONDS =  n 
 
-# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{HYDROL_CWRR}
+# FROZ_FRAC_CORR  ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+FROZ_FRAC_CORR  =  1.0 
+
+# MAX_FROZ_HYDRO ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+MAX_FROZ_HYDRO =  1.0 
+
+# SMTOT_CORR ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+SMTOT_CORR =  2.0 
+
+# DO_RSOIL ([FLAG]) :  Should we reduce soil evaporation with a soil resistance 	{}
+DO_RSOIL =  n 
+
+# OK_DYNROOT ([FLAG]) :  Calculate dynamic root profile to optimize soil moisture usage   	{}
+OK_DYNROOT =  n 
+
+# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{}
 CWRR_N_VANGENUCHTEN =  1.89, 1.56, 1.31 
 
-# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{HYDROL_CWRR}
+# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{}
 CWRR_A_VANGENUCHTEN =  0.0075, 0.0036, 0.0019 
 
-# VWC_RESIDUAL ([mm]  ) :  Residual soil water content 	{HYDROL_CWRR}
+# VWC_RESIDUAL ([m3/m3]  ) :  Residual soil water content 	{}
 VWC_RESIDUAL =  0.065, 0.078, 0.095 
 
-# VWC_SAT ([-]  ) :  Saturated soil water content 	{HYDROL_CWRR}
+# VWC_SAT ([m3/m3]  ) :  Saturated soil water content 	{}
 VWC_SAT =  0.41, 0.43, 0.41 
 
-# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{HYDROL_CWRR }
+# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{}
 CWRR_KS  =  1060.8, 249.6, 62.4 
 
-# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{HYDROL_CWRR}
+# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{}
 WETNESS_TRANSPIR_MAX =  0.5, 0.5, 0.5 
 
-# DRAINAGE_FACTOR_F ([-]   ) :  Max value of the permeability coeff at the bottom of the soil  	{HYDROL_CWRR}
-DRAINAGE_FACTOR_F =  1.0, 1.0, 1.0  
-
-# VWC_FC  ([-]   ) :  Volumetric water content field capacity 	{HYDROL_CWRR}
+# VWC_FC  ([m3/m3]   ) :  Volumetric water content field capacity 	{}
 VWC_FC  =  0.32, 0.32, 0.32 
 
-# VWC_WP ([-]   ) :  Volumetric water content Wilting pt 	{HYDROL_CWRR}
+# VWC_WP ([m3/m3]   ) :  Volumetric water content Wilting pt 	{}
 VWC_WP =  0.10, 0.10, 0.10  
 
-# VWC_MIN_FOR_WET_ALB ([-]  ) :  Vol. wat. cont. above which albedo is cst 	{HYDROL_CWRR}
+# VWC_MIN_FOR_WET_ALB ([m3/m3]  ) :  Vol. wat. cont. above which albedo is cst 	{}
 VWC_MIN_FOR_WET_ALB =  0.25, 0.25, 0.25 
 
-# VWC_MAX_FOR_DRY_ALB ([-]   ) :  Vol. wat. cont. below which albedo is cst 	{HYDROL_CWRR}
+# VWC_MAX_FOR_DRY_ALB ([m3/m3]   ) :  Vol. wat. cont. below which albedo is cst 	{}
 VWC_MAX_FOR_DRY_ALB =  0.1, 0.1, 0.1 
 
-# HYDROL_MOISTURE_CONTENT () :  Soil moisture on each soil tile and levels 	{HYDROL_CWRR       }
+# HYDROL_MOISTURE_CONTENT ([m3/m3]) :  Soil moisture on each soil tile and levels 	{}
 HYDROL_MOISTURE_CONTENT =  0.3 
 
-# US_INIT () :  US_NVM_NSTM_NSLM 	{HYDROL_CWRR       }
+# US_INIT ([-]) :  US_NVM_NSTM_NSLM 	{}
 US_INIT =  0.0 
 
-# FREE_DRAIN_COEF () :  Coefficient for free drainage at bottom 	{HYDROL_CWRR       }
-FREE_DRAIN_COEF =  1.0, 1.0, 1.0 
-
-# WATER_TO_INFILT () :  Water to be infiltrated on top of the soil 	{HYDROL_CWRR    }
+# ZWT_FORCE ([m]) :  Prescribed water depth, dimension nstm 	{}
+ZWT_FORCE =  -9999. -9999. -9999. 
+
+# FREE_DRAIN_COEF ([-]) :  Coefficient for free drainage at bottom, dimension nstm 	{}
+FREE_DRAIN_COEF =  1.0 1.0 1.0 
+
+# WATER_TO_INFILT ([mm]) :  Water to be infiltrated on top of the soil 	{}
 WATER_TO_INFILT =  0.0 
 
-# EVAPNU_SOIL () :  Bare soil evap on each soil if not found in restart 	{HYDROL_CWRR  }
+# EVAPNU_SOIL ([mm]) :  Bare soil evap on each soil if not found in restart 	{}
 EVAPNU_SOIL =  0.0 
 
@@ -1396,39 +1603,39 @@
 HYDROL_SNOW =  0.0 
 
-# HYDROL_SNOWAGE () :  Initial snow age if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOWAGE (***) :  Initial snow age if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOWAGE =  0.0 
 
-# HYDROL_SNOW_NOBIO () :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO ([mm]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO =  0.0 
 
-# HYDROL_SNOW_NOBIO_AGE () :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO_AGE (***) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO_AGE =  0.0 
 
-# HYDROL_QSV () :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
+# HYDROL_QSV ([mm]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
 HYDROL_QSV =  0.0 
 
-# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_N0  =  0.95 
-
-# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_POWER =  0.34 
-
-# CWRR_AKS_A0  ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_A0  =  0.00012 
-
-# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_POWER =  0.53 
-
-# KFACT_DECAY_RATE ([-]) :  Factor for Ks decay with depth 	{HYDROL_CWRR }
+# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_N0  =  0.0 
+
+# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_POWER =  0.0 
+
+# CWRR_AKS_A0  ([1/mm]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_A0  =  0.0 
+
+# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_POWER =  0.0 
+
+# KFACT_DECAY_RATE ([1/m]) :  Factor for Ks decay with depth 	{}
 KFACT_DECAY_RATE =  2.0 
 
-# KFACT_STARTING_DEPTH ([-]) :  Depth for compacted value of Ks  	{HYDROL_CWRR }
+# KFACT_STARTING_DEPTH ([m]) :  Depth for compacted value of Ks  	{}
 KFACT_STARTING_DEPTH =  0.3 
 
-# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{HYDROL_CWRR }
+# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{}
 KFACT_MAX =  10.0 
 
-# ROUTING_TIMESTEP ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
-ROUTING_TIMESTEP =  86400. 
+# DT_ROUTING  ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
+DT_ROUTING  =  86400. 
 
 # ROUTING_RIVERS ([-]) :  Number of rivers  	{RIVER_ROUTING}
@@ -1445,11 +1652,11 @@
 
 # SLOW_TCST ([days]) :  Time constant for the slow reservoir  	{RIVER_ROUTING }
-SLOW_TCST =  n 
+SLOW_TCST =  25.0  
 
 # FAST_TCST ([days]) :  Time constant for the fast reservoir  	{RIVER_ROUTING }
-FAST_TCST =  fast_tcst_cwrr or fast_tcst_chois depending on flag HYDROL_CWRR 
+FAST_TCST =  3.0  
 
 # STREAM_TCST ([days]) :  Time constant for the stream reservoir  	{RIVER_ROUTING}
-STREAM_TCST =  stream_tcst_cwrr or stream_tcst_chois depending on flag HYDROL_CWRR 
+STREAM_TCST =  0.24 
 
 # FLOOD_TCST ([days]) :  Time constant for the flood reservoir  	{RIVER_ROUTING}
@@ -1471,9 +1678,12 @@
 POND_CRI =  2000. 
 
+# MAX_LAKE_RESERVOIR ([kg/m2(routing area)] ) :  Maximum limit of water in lake_reservoir 	{RIVER_ROUTING}
+MAX_LAKE_RESERVOIR =  7000 
+
 # RIVER_DESC ([FLAG]) :  Writes out a description of the rivers 	{RIVER_ROUTING}
 RIVER_DESC =  n 
 
 # RIVER_DESC_FILE ([FILE]) :  Filename in which we write the description of the rivers. If suffix is ".nc" a netCDF file is created 	{RIVER_DESC}
-RIVER_DESC_FILE =  river_desc.txt 
+RIVER_DESC_FILE =  river_desc.nc 
 
 # ROUTING_FILE ([FILE]) :  Name of file which contains the routing information 	{RIVER_ROUTING}
@@ -1504,11 +1714,8 @@
 FORCESOIL_NB_YEAR =  1 
 
-# BAVARD ([-]) :  level of online diagnostics in STOMATE (0-4) 	{OK_STOMATE}
-BAVARD =  1 
-
-# REFTEMP_FILE ([FILE]) :  Name of file from which the reference temperature is read 	{OK_STOMATE}
-REFTEMP_FILE =  reftemp.nc 
-
 # XIOS_ORCHIDEE_OK ([FLAG]) :  Use XIOS for writing diagnostics file 	{}
-XIOS_ORCHIDEE_OK =  n 
-
+XIOS_ORCHIDEE_OK =  y  
+
+# XIOS_INTERPOLATION ([FLAG]) :  Actiave reading and intrepolation using XIOS 	{XIOS_ORCHIDEE_OK}
+XIOS_INTERPOLATION =  n 
+
Index: /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/TESTSTOMATE/PARAM/orchidee.default
===================================================================
--- /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/TESTSTOMATE/PARAM/orchidee.default	(revision 5632)
+++ /tags/ORCHIDEE_2_1/ORCHIDEE_OL/SPINUP/SUBJOB/TESTSTOMATE/PARAM/orchidee.default	(revision 5633)
@@ -6,5 +6,5 @@
 #
 #*******************************************************************************************
-#                    Namelist for ORCHIDEE (trunk revision 2135) 
+#                    Namelist for ORCHIDEE 
 #*******************************************************************************************
 #
@@ -18,12 +18,15 @@
 #*******************************************************************************************
 
-# DEBUG_INFO ([FLAG] ) :  Flag for debug information 	{[-]}
-DEBUG_INFO =  n 
+# LWDOWN_CONS ([FLAG]) :  Conserve longwave downwelling radiation in the forcing 	{}
+LWDOWN_CONS =  n 
+
+# SWDOWN_CONS ([FLAG]) :  Conserve shortwave downwelling radiation in the forcing 	{}
+SWDOWN_CONS =  LWDOWN_CONS 
 
 # FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
 FORCING_FILE =  forcing_file.nc 
 
-# SPLIT_DT ([-]) :  splits the timestep imposed by the forcing 	{NOT(WEATHERGEN)}
-SPLIT_DT =  12 
+# DT_SECHIBA ([seconds]) :  Time-step of the SECHIBA component 	{NOT(WEATHERGEN)}
+DT_SECHIBA =  1800. 
 
 # RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions 	{[-]}
@@ -40,5 +43,5 @@
 
 # TIME_LENGTH ([seconds, days, months, years]) :  Length of the integration in time. 	{[-]}
-TIME_LENGTH =  DEF 
+TIME_LENGTH =  Full length of the forcing file  
 
 # RELAXATION ([FLAG]) :  method of forcing 	{[-]}
@@ -48,17 +51,8 @@
 RELAX_A =  1.0 
 
-# NO_INTER  ([FLAG]) :  No interpolation IF split is larger than 1 	{[-]}
-NO_INTER  =  y 
-
-# INTER_LIN ([FLAG]) :  Interpolation IF split is larger than 1 	{[-]}
-INTER_LIN =  n 
-
 # SPRED_PREC ([-]) :  Spread the precipitation. 	{[-]}
-SPRED_PREC =  1 
-
-# NETRAD_CONS ([FLAG]) :  Conserve net radiation in the forcing 	{INTER_LIN}
-NETRAD_CONS =  y 
-
-# ATM_CO2 ([ppm]) :  Value for atm CO2 	{[-]}
+SPRED_PREC =  Half of the forcing time step or uniform, depending on dt_force and dt_sechiba 
+
+# ATM_CO2 ([ppm]) :  Value to precribe atmosoheric CO2 	{[FORCE_CO2_VEG=y or Offline mode]}
 ATM_CO2 =  350. 
 
@@ -87,4 +81,13 @@
 ZONAL_RES =  2. 
 
+# HEIGHT_LEV1 ([m]) :  Height at which T and Q are given 	{offline mode}
+HEIGHT_LEV1 =  2.0 
+
+# HEIGHT_LEVW ([m]) :  Height at which the wind is given 	{offline mode}
+HEIGHT_LEVW =  10.0 
+
+# NBUFF (-) :  Number of time steps of data to buffer between each reading of the forcing file 	{OFF_LINE}
+NBUFF =  1 
+
 # IPPREC ([-] ) :  Use prescribed values 	{ALLOW_WEATHERGEN}
 IPPREC =  0 
@@ -102,6 +105,6 @@
 DUMP_WEATHER_GATHERED =  y 
 
-# HEIGHT_LEV1 ([m]) :   	{DUMP_WEATHER}
-HEIGHT_LEV1 =  10. 
+# HEIGHT_LEV1_DUMP ([m]) :   	{DUMP_WEATHER}
+HEIGHT_LEV1_DUMP =  10. 
 
 #*******************************************************************************************
@@ -109,30 +112,9 @@
 #*******************************************************************************************
 
-# LONGPRINT ([FLAG]) :  ORCHIDEE will print more messages 	{OK_SECHIBA}
-LONGPRINT =  n 
-
-# CHECKTIME ([FLAG]) :  ORCHIDEE will print messages on time 	{OK_SECHIBA}
-CHECKTIME =  n 
-
 # SOILTYPE_CLASSIF ([-]) :  Type of classification used for the map of soil types  	{!IMPOSE_VEG}
 SOILTYPE_CLASSIF =  zobler 
 
-# ORCHIDEE_WATCHOUT ([FLAG]) :  ORCHIDEE will write out its forcing to a file 	{}
-ORCHIDEE_WATCHOUT =  n 
-
-# DT_WATCHOUT ([seconds]) :  ORCHIDEE will write out with this frequency 	{ORCHIDEE_WATCHOUT}
-DT_WATCHOUT =  dt 
-
-# WATCHOUT_FILE ([FILE]) :  Filenane for the ORCHIDEE forcing file 	{ORCHIDEE_WATCHOUT}
-WATCHOUT_FILE =  orchidee_watchout.nc 
-
 # RIVER_ROUTING ([FLAG]) :  Decides if we route the water or not 	{OK_SECHIBA}
-RIVER_ROUTING =  n 
-
-# HYDROL_CWRR ([FLAG]) :  Allows to switch on the multilayer hydrology of CWRR 	{OK_SECHIBA}
-HYDROL_CWRR =  n 
-
-# HYDROL_SOIL_DEPTH ([m]) :  Total depth of soil reservoir 	{OK_SECHIBA }
-HYDROL_SOIL_DEPTH =  4./ 2. (if HYDROL_CWRR) 
+RIVER_ROUTING =  y 
 
 # DO_IRRIGATION ([FLAG]) :  Should we compute an irrigation flux  	{RIVER_ROUTING }
@@ -142,23 +124,20 @@
 DO_FLOODPLAINS =  n 
 
-# CHECK_WATERBAL ([FLAG]  ) :  Should we check the global water balance  	{OK_SECHIBA}
-CHECK_WATERBAL =  n 
-
-# STOMATE_OK_CO2 ([FLAG]) :  Activate CO2? 	{OK_SECHIBA }
-STOMATE_OK_CO2 =  n 
-
-# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA and OK_CO2}
-STOMATE_OK_STOMATE =  n 
+# STOMATE_OK_STOMATE ([FLAG]) :  Activate STOMATE? 	{OK_SECHIBA}
+STOMATE_OK_STOMATE =  y 
+
+# DO_WOOD_HARVEST ([FLAG]) :  Activate Wood Harvest ? 	{OK_STOMATE}
+DO_WOOD_HARVEST =  y 
 
 # STOMATE_OK_DGVM ([FLAG]) :  Activate DGVM? 	{OK_STOMATE}
 STOMATE_OK_DGVM =  n 
 
-# DIFFUCO_OK_INCA ([FLAG]) :  Activate DIFFUCO_INCA? 	{OK_SECHIBA}
-DIFFUCO_OK_INCA =  n 
-
-# LEAFAGE_OK_INCA ([FLAG]) :  Activate LEAFAGE? 	{DIFFUCO_OK_INCA}
-LEAFAGE_OK_INCA =  n 
-
-# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{DIFFUCO_OK_INCA }
+# CHEMISTRY_BVOC ([FLAG]) :  Activate calculations for BVOC 	{OK_SECHIBA}
+CHEMISTRY_BVOC =  n 
+
+# CHEMISTRY_LEAFAGE ([FLAG]) :  Activate LEAFAGE? 	{CHEMISTRY_BVOC}
+CHEMISTRY_LEAFAGE =  n 
+
+# CANOPY_EXTINCTION  ([FLAG]) :  Use canopy radiative transfer model? 	{CHEMISTRY_BVOC }
 CANOPY_EXTINCTION  =  n 
 
@@ -166,15 +145,12 @@
 CANOPY_MULTILAYER =  n 
 
-# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{DIFFUCO_OK_INCA }
+# NOx_RAIN_PULSE ([FLAG]) :  Calculate NOx emissions with pulse? 	{CHEMISTRY_BVOC }
 NOx_RAIN_PULSE =  n 
 
-# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{DIFFUCO_OK_INCA }
+# NOx_BBG_FERTIL ([FLAG]) :  Calculate NOx emissions with bbg fertilizing effect? 	{CHEMISTRY_BVOC }
 NOx_BBG_FERTIL =  n 
 
-# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{DIFFUCO_OK_INCA }
+# NOx_FERTILIZERS_USE ([FLAG] ) :  Calculate NOx emissions with fertilizers use? 	{CHEMISTRY_BVOC }
 NOx_FERTILIZERS_USE =  n 
-
-# STOMATE_WATCHOUT ([FLAG]) :  STOMATE does minimum service 	{OK_SECHIBA }
-STOMATE_WATCHOUT =  n 
 
 # NVM ([-]) :  number of PFTs   	{OK_SECHIBA or OK_STOMATE}
@@ -184,4 +160,67 @@
 IMPOSE_PARAM =  y 
 
+# DEPTH_MAX_T (m) :  Maximum depth of the soil thermodynamics 	{}
+DEPTH_MAX_T =  90.0 
+
+# DEPTH_MAX_H (m) :  Maximum depth of soil moisture 	{}
+DEPTH_MAX_H =  2.0 
+
+# DEPTH_TOPTHICK (m) :  Thickness of upper most Layer  	{}
+DEPTH_TOPTHICK =  9.77517107e-04 
+
+# DEPTH_CSTTHICK (m) :  Depth at which constant layer thickness start 	{}
+DEPTH_CSTTHICK =  DEPTH_MAX_H  
+
+# REFINEBOTTOM (-) :  Depth at which the hydrology layers will be refined towards the bottom. 	{}
+REFINEBOTTOM =  .FALSE. 
+
+# DEPTH_GEOM (m) :  Depth at which we resume geometrical increases for temperature 	{}
+DEPTH_GEOM =  DEPTH_MAX_H  
+
+# RATIO_GEOM_BELOW (-) :  Ratio of the geometrical series defining the thickness below DEPTH_GEOM 	{}
+RATIO_GEOM_BELOW =  2 
+
+# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
+ALMA_OUTPUT =  n 
+
+# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
+OUTPUT_FILE =  sechiba_history.nc 
+
+# WRITE_STEP ([seconds]) :  Frequency in seconds for sechiba_history.nc file with IOIPSL 	{OK_SECHIBA, NOT XIOS_ORCHIDEE_OK}
+WRITE_STEP =  86400. 
+
+# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
+SECHIBA_HISTLEVEL =  5 
+
+# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
+SECHIBA_HISTFILE2 =  n 
+
+# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
+WRITE_STEP2 =  1800.0 
+
+# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
+SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
+
+# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
+SECHIBA_HISTLEVEL2 =  1 
+
+# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_OUTPUT_FILE =  stomate_history.nc 
+
+# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
+STOMATE_HIST_DT =  10. 
+
+# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
+STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
+
+# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
+STOMATE_IPCC_HIST_DT =  0. 
+
+# OK_HISTSYNC ([FLAG]) :  Syncronize and write IOIPSL output files at each time step 	{}
+OK_HISTSYNC =  FALSE 
+
+# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
+STOMATE_HISTLEVEL =  10 
+
 # SECHIBA_restart_in ([FILE]) :  Name of restart to READ for initial conditions 	{OK_SECHIBA }
 SECHIBA_restart_in =  NONE 
@@ -190,51 +229,15 @@
 SECHIBA_rest_out =  sechiba_rest_out.nc 
 
-# SECHIBA_reset_time ([FLAG]) :  Override the time from the restart files for SECHIBA and STOMATE 	{OK_SECHIBA}
-SECHIBA_reset_time =  y 
-
-# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
+# STOMATE_RESTART_FILEIN ([FILE]) :  Name of restart to READ for initial conditions of STOMATE 	{STOMATE_OK_STOMATE}
 STOMATE_RESTART_FILEIN =  NONE 
 
-# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE or STOMATE_WATCHOUT}
-STOMATE_RESTART_FILEOUT =  stomate_restart.nc 
-
-# ALMA_OUTPUT ([FLAG]) :  Should the output follow the ALMA convention 	{OK_SECHIBA}
-ALMA_OUTPUT =  n 
-
-# OUTPUT_FILE ([FILE]) :  Name of file in which the output is going to be written 	{OK_SECHIBA}
-OUTPUT_FILE =  sechiba_history.nc 
-
-# WRITE_STEP ([seconds]) :  Frequency in seconds at which to WRITE output 	{OK_SECHIBA}
-WRITE_STEP =  86400. 
-
-# SECHIBA_HISTLEVEL ([-]) :  SECHIBA history output level (0..10) 	{OK_SECHIBA and HF}
-SECHIBA_HISTLEVEL =  5 
-
-# SECHIBA_HISTFILE2 ([FLAG]) :  Flag to switch on histfile 2 for SECHIBA (hi-frequency ?) 	{OK_SECHIBA}
-SECHIBA_HISTFILE2 =  n 
-
-# WRITE_STEP2 ([seconds]) :  Frequency in seconds at which to WRITE output 	{SECHIBA_HISTFILE2}
-WRITE_STEP2 =  1800.0 
-
-# SECHIBA_OUTPUT_FILE2 ([FILE]) :  Name of file in which the output number 2 is going to be written 	{SECHIBA_HISTFILE2}
-SECHIBA_OUTPUT_FILE2 =  sechiba_out_2.nc 
-
-# SECHIBA_HISTLEVEL2 ([-] ) :  SECHIBA history 2 output level (0..10) 	{SECHIBA_HISTFILE2}
-SECHIBA_HISTLEVEL2 =  1 
-
-# STOMATE_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_OUTPUT_FILE =  stomate_history.nc 
-
-# STOMATE_HIST_DT ([days]) :  STOMATE history time step 	{OK_STOMATE}
-STOMATE_HIST_DT =  10. 
-
-# STOMATE_IPCC_OUTPUT_FILE ([FILE]) :  Name of file in which STOMATE's output is going to be written 	{OK_STOMATE}
-STOMATE_IPCC_OUTPUT_FILE =  stomate_ipcc_history.nc 
-
-# STOMATE_IPCC_HIST_DT ([days]) :  STOMATE IPCC history time step 	{OK_STOMATE}
-STOMATE_IPCC_HIST_DT =  0. 
-
-# STOMATE_HISTLEVEL ([-]) :  STOMATE history output level (0..10) 	{OK_STOMATE}
-STOMATE_HISTLEVEL =  10 
+# STOMATE_RESTART_FILEOUT ([FILE]) :  Name of restart files to be created by STOMATE 	{STOMATE_OK_STOMATE}
+STOMATE_RESTART_FILEOUT =  stomate_rest_out.nc 
+
+# FORCE_CO2_VEG ([FLAG]) :  Flag to force the value of atmospheric CO2 for vegetation. 	{Only in coupled mode}
+FORCE_CO2_VEG =  FALSE 
+
+# TAU_OUTFLOW ([days]) :  Number of days over which the coastal- and riverflow will be distributed 	{Only in coupled mode}
+TAU_OUTFLOW =  0 
 
 # ECCENTRICITY ([-]) :  Use prescribed values 	{ALLOW_WEATHERGEN}
@@ -247,7 +250,4 @@
 OBLIQUITY =  23.446 
 
-# OK_THROUGHFALL_PFT ([FLAG]) :  Activate use of PERCENT_THROUGHFALL_PFT 	{HYDROL_CWRR}
-OK_THROUGHFALL_PFT =  FALSE 
-
 # PFT_TO_MTC ([-]) :  correspondance array linking a PFT to MTC 	{OK_SECHIBA or OK_STOMATE}
 PFT_TO_MTC =  1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 
@@ -271,4 +271,10 @@
 SLOWPROC_HEIGHT =  0., 30., 30., 20., 20., 20., 15., 15., 15., .5, .6, 1., 1. 
 
+# Z0_OVER_HEIGHT ([-] ) :  factor to calculate roughness height from height of canopy  	{OK_SECHIBA}
+Z0_OVER_HEIGHT =  0., 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625 
+
+# RATIO_Z0M_Z0H ([-]) :  Ratio between z0m and z0h 	{OK_SECHIBA}
+RATIO_Z0M_Z0H =  1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0  
+
 # TYPE_OF_LAI ([-]) :  Type of behaviour of the LAI evolution algorithm  	{OK_SECHIBA}
 TYPE_OF_LAI =  inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter, inter 
@@ -283,26 +289,29 @@
 VCMAX_FIX =  0., 40., 50., 30., 35., 40.,30., 40., 35., 60., 60., 70., 70. 
 
-# DOWNREGULATION_CO2_COEFF ([-]) :  coefficient for CO2 downregulation (unitless) 	{OK_CO2}
-DOWNREGULATION_CO2_COEFF =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
-
-# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{OK_CO2}
+# DOWNREG_CO2 ([-]) :  coefficient for CO2 downregulation (unitless) 	{}
+DOWNREG_CO2 =  0., 0.38, 0.38, 0.28, 0.28, 0.28, 0.22, 0.22, 0.22, 0.26, 0.26, 0.26, 0.26 
+
+# E_KmC ([J mol-1]) :  Energy of activation for KmC 	{}
 E_KmC =  -9999.,  79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430., 79430. 
 
-# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{OK_CO2}
+# E_KmO ([J mol-1]) :  Energy of activation for KmO 	{}
 E_KmO =  -9999., 36380.,  36380.,  36380.,  36380.,  36380., 36380., 36380., 36380., 36380., 36380., 36380., 36380. 
 
-# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{OK_CO2}
+# E_Sco ([J mol-1]) :  Energy of activation for Sco 	{}
+E_Sco =  -9999., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460., -24460. 
+
+# E_gamma_star ([J mol-1]) :  Energy of activation for gamma_star 	{}
 E_gamma_star =  -9999., 37830.,  37830.,  37830.,  37830.,  37830., 37830., 37830., 37830., 37830., 37830., 37830., 37830. 
 
-# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{OK_CO2}
+# E_Vcmax ([J mol-1]) :  Energy of activation for Vcmax 	{}
 E_Vcmax =  -9999., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 71513., 67300., 71513., 67300. 
 
-# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{OK_CO2}
+# E_Jmax ([J mol-1]) :  Energy of activation for Jmax 	{}
 E_Jmax =  -9999., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 49884., 77900., 49884., 77900.  
 
-# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# aSV ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 aSV =  -9999., 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 668.39, 641.64, 668.39, 641.64  
 
-# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{OK_CO2}
+# bSV ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Vcmax 	{}
 bSV =  -9999., -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, -1.07, 0., -1.07, 0.  
 
@@ -313,21 +322,30 @@
 TPHOTO_MAX =  -9999., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55., 55. 
 
-# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# aSJ ([J K-1 mol-1]) :  a coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 aSJ =  -9999., 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 659.70, 630., 659.70, 630.  
 
-# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{OK_CO2}
+# bSJ ([J K-1 mol-1 Â°C-1]) :  b coefficient of the linear regression (a+bT) defining the Entropy term for Jmax 	{}
 bSJ =  -9999., -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, -0.75, 0., -0.75, 0.  
 
-# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{OK_CO2}
+# D_Vcmax ([J mol-1]) :  Energy of deactivation for Vcmax 	{}
 D_Vcmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{OK_CO2}
+# D_Jmax ([J mol-1]) :  Energy of deactivation for Jmax 	{}
 D_Jmax =  -9999., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 200000., 192000., 200000., 192000. 
 
-# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{OK_CO2}
+# E_gm  ([J mol-1] ) :  Energy of activation for gm  	{ }
+E_gm  =  -9999., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., 49600., -9999., 49600., -9999.  
+
+# S_gm  ([J K-1 mol-1] ) :  Entropy term for gm  	{ }
+S_gm  =  -9999., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., 1400., -9999., 1400., -9999.  
+
+# D_gm  ([J mol-1] ) :  Energy of deactivation for gm  	{ }
+D_gm  =  -9999., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., 437400., -9999., 437400., -9999.  
+
+# E_Rd ([J mol-1]) :  Energy of activation for Rd 	{}
 E_Rd =  -9999., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390., 46390. 
 
 # VCMAX25 ([micromol/m^2/s]) :  Maximum rate of Rubisco activity-limited carboxylation at 25Â°C 	{OK_STOMATE}
-VCMAX25 =  -9999., 65., 65., 35., 45., 55., 35., 45., 35., 70., 70., 70., 70. 
+VCMAX25 =  -9999., 45.0, 45.0, 35.0, 40.0, 50.0, 45.0, 35.0, 35.0, 50.0, 50.0, 60.0, 60.0 
 
 # ARJV ([mu mol e- (mu mol CO2)-1]) :  a coefficient of the linear regression (a+bT) defining the Jmax25/Vcmax25 ratio  	{OK_STOMATE}
@@ -337,54 +355,72 @@
 BRJV =  -9999., -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, -0.035, 0., -0.035, 0. 
 
-# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{OK_CO2}
+# KmC25 ([ubar]) :  MichaelisâMenten constant of Rubisco for CO2 at 25Â°C 	{}
 KmC25 =  -9999., 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 404.9, 650., 404.9, 650. 
 
-# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{OK_CO2}
+# KmO25 ([ubar]) :  MichaelisâMenten constant of Rubisco for O2 at 25Â°C 	{}
 KmO25 =  -9999., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 278400., 450000., 278400., 450000. 
 
-# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{OK_CO2}
+# Sco25 ([bar bar-1]) :  Relative CO2 /O2 specificity factor for Rubisco at 25ÃÂ°C 	{}
+Sco25 =  -9999., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2800., 2590., 2800., 2590. 
+
+# gm25  ([mol m-2 s-1 bar-1] ) :  Mesophyll diffusion conductance at 25ÃÂÃÂ°C  	{ }
+gm25  =  -9999., 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, 0.4, -9999., 0.4, -9999.  
+
+# gamma_star25 ([ubar]) :  Ci-based CO2 compensation point in the absence of Rd at 25Â°C (ubar) 	{}
 gamma_star25 =  -9999., 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75, 42.75 
 
-# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
-a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85 
-
-# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{OK_CO2}
+# a1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
+a1 =  -9999., 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.85, 0.72, 0.85, 0.72 
+
+# b1 ([-]) :  Empirical factor involved in the calculation of fvpd 	{}
 b1 =  -9999., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.20, 0.14, 0.20 
 
-# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{OK_CO2}
+# g0 ([mol mâ2 sâ1 barâ1]) :  Residual stomatal conductance when irradiance approaches zero  	{}
 g0 =  -9999., 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.01875, 0.00625, 0.01875  
 
-# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{OK_CO2}
+# h_protons ([mol mol-1]) :  Number of protons required to produce one ATP 	{}
 h_protons =  -9999., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4., 4.  
 
-# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{OK_CO2}
+# fpsir ([-]) :  Fraction of PSII eâ transport rate partitioned to the C4 cycle 	{}
 fpsir =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.4, -9999., 0.4  
 
-# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{OK_CO2}
+# fQ ([-]) :  Fraction of electrons at reduced plastoquinone that follow the Q-cycle 	{}
 fQ =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 1., -9999., 1. 
 
-# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{OK_CO2}
+# fpseudo ([-]) :  Fraction of electrons at PSI that follow pseudocyclic transport  	{}
 fpseudo =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{OK_CO2}
+# kp ([mol mâ2 sâ1 barâ1]) :  Initial carboxylation efficiency of the PEP carboxylase 	{}
 kp =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.7, -9999., 0.7 
 
-# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{OK_CO2}
+# alpha ([-]) :  Fraction of PSII activity in the bundle sheath 	{}
 alpha =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.1, -9999., 0.1 
 
-# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{OK_CO2}
+# gbs ([mol mâ2 sâ1 barâ1]) :  Bundle-sheath conductance 	{}
 gbs =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.003, -9999., 0.003 
 
-# theta ([â]) :  Convexity factor for response of J to irradiance 	{OK_CO2}
+# theta ([â]) :  Convexity factor for response of J to irradiance 	{}
 theta =  -9999., 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7, 0.7 
 
-# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{OK_CO2}
+# alpha_LL ([mol eâ (mol photon)â1]) :  Conversion efficiency of absorbed light into J at strictly limiting light 	{}
 alpha_LL =  -9999., 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372, 0.372 
+
+# STRESS_VCMAX ([-]) :  Stress on vcmax 	{OK_SECHIBA or OK_STOMATE}
+STRESS_VCMAX =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GS ([-]) :  Stress on gs 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GS =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
+# STRESS_GM ([-]) :  Stress on gm 	{OK_SECHIBA or OK_STOMATE}
+STRESS_GM =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
 
 # EXT_COEFF ([-]) :  extinction coefficient of the Monsi&Seaki relationship (1953) 	{OK_SECHIBA or OK_STOMATE}
 EXT_COEFF =  .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5 
 
+# EXT_COEFF_VEGETFRAC ([-]) :  extinction coefficient used for the calculation of the bare soil fraction  	{OK_SECHIBA or OK_STOMATE}
+EXT_COEFF_VEGETFRAC =  1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1. 
+
 # HYDROL_HUMCSTE ([m]) :  Root profile 	{OK_SECHIBA}
-HYDROL_HUMCSTE =  humcste_cwrr or humcste_mct depending on flag HYDROL_CWRR 
+HYDROL_HUMCSTE =  humcste_ref2m or humcste_ref4m depending on zmaxh 
 
 # PREF_SOIL_VEG ([-]        ) :  The soil tile number for each vegetation 	{OK_SECHIBA or OK_STOMATE}
@@ -403,65 +439,128 @@
 WMAX_VEG =  150., 150., 150., 150., 150., 150., 150.,150., 150., 150., 150., 150., 150. 
 
-# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy 	{OK_SECHIBA OR HYDROL_CWRR}
-PERCENT_THROUGHFALL_PFT =  30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 30. 
-
-# SNOWA_AGED ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow) 	{OK_SECHIBA}
-SNOWA_AGED =  0.35, 0., 0., 0.14, 0.14, 0.14, 0.14, 0.14, 0.14, 0.18, 0.18, 0.18, 0.18 
-
-# SNOWA_DEC ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow 	{OK_SECHIBA}
-SNOWA_DEC =  0.45, 0.,  0., 0.06, 0.06, 0.11, 0.06, 0.11, 0.11, 0.52,0.52, 0.52, 0.52 
+# PERCENT_THROUGHFALL_PFT ([%]) :  Percent by PFT of precip that is not intercepted by the canopy. Default value depend on run mode. 	{OK_SECHIBA}
+PERCENT_THROUGHFALL_PFT =  Case offline [0. 0. 0....] else [30. 30. 30.....] 
+
+# SNOWA_AGED_VIS ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), visible albedo 	{OK_SECHIBA}
+SNOWA_AGED_VIS =  0.74, 0.0, 0.0, 0.08, 0.24, 0.07, 0.18, 0.18, 0.33, 0.57, 0.57, 0.57, 0.57 
+
+# SNOWA_AGED_NIR ([-]) :  Minimum snow albedo value for each vegetation type after aging (dirty old snow), near infrared albedo 	{OK_SECHIBA}
+SNOWA_AGED_NIR =  0.50, 0.0, 0.0, 0.10, 0.37, 0.08, 0.16, 0.17, 0.27, 0.44, 0.44, 0.44, 0.44   
+
+# SNOWA_DEC_VIS ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, visible albedo 	{OK_SECHIBA}
+SNOWA_DEC_VIS =  0.21, 0.0, 0.0, 0.14, 0.08, 0.17, 0.05, 0.06, 0.09, 0.15, 0.15, 0.15, 0.15  
+
+# SNOWA_DEC_NIR ([-]) :  Decay rate of snow albedo value for each vegetation type as it will be used in condveg_snow, near infrared albedo 	{OK_SECHIBA}
+SNOWA_DEC_NIR =  0.13, 0.0, 0.0, 0.10, 0.10, 0.16, 0.04, 0.07, 0.08, 0.12, 0.12, 0.12, 0.12 
 
 # ALB_LEAF_VIS ([-]) :  leaf albedo of vegetation type, visible albedo 	{OK_SECHIBA}
-ALB_LEAF_VIS =  .00, .04, .06, .06, .06,.06, .06, .06, .06, .10, .10, .10, .10 
+ALB_LEAF_VIS =  0.00, 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.03, 0.06, 0.06, 0.06, 0.06 
 
 # ALB_LEAF_NIR ([-]) :  leaf albedo of vegetation type, near infrared albedo 	{OK_SECHIBA}
-ALB_LEAF_NIR =  .00, .20, .22, .22, .22,.22, .22, .22, .22, .30, .30, .30, .30  
-
-# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{DIFFUCO_OK_INCA}
+ALB_LEAF_NIR =  0.00, 0.23, 0.18, 0.18, 0.20, 0.24, 0.15, 0.26, 0.20, 0.24, 0.27, 0.28, 0.26 
+
+# ISO_ACTIVITY ([-]) :  Biogenic activity for each age class : isoprene 	{CHEMISTRY_BVOC}
 ISO_ACTIVITY =  0.5, 1.5, 1.5, 0.5 
 
-# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{DIFFUCO_OK_INCA}
+# METHANOL_ACTIVITY ([-]) :  Isoprene emission factor for each age class : methanol 	{CHEMISTRY_BVOC}
 METHANOL_ACTIVITY =  1., 1., 0.5, 0.5 
 
-# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 8., 8., 16., 24., 5., 5. 
-
-# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MONOTERPENE =  0., 0.8, 0.8, 2.4, 1.2, 0.8, 2.4, 2.4, 2.4, 0.8, 1.2, 0.2, 0.2 
-
-# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{DIFFUCO_OK_INCA }
+# EM_FACTOR_ISOPRENE ([ugC/g/h] ) :  Isoprene emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_ISOPRENE =  0., 24., 24., 8., 16., 45., 8., 18., 0.5, 12., 18., 5., 5. 
+
+# EM_FACTOR_MONOTERPENE ([ugC/g/h] ) :  Monoterpene emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MONOTERPENE =  0., 2.0, 2.0, 1.8, 1.4, 1.6, 1.8, 1.4, 1.8, 0.8, 0.8,  0.22, 0.22 
+
+# C_LDF_MONO  ([]) :  Monoterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_MONO  =  0.6 
+
+# C_LDF_SESQ  ([]) :  Sesquiterpenes fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_SESQ  =  0.5 
+
+# C_LDF_METH  ([]) :  Methanol fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_METH  =  0.8 
+
+# C_LDF_ACET  ([]) :  Acetone fraction dependancy to light 	{CHEMISTRY_BVOC}
+C_LDF_ACET  =  0.2 
+
+# EM_FACTOR_APINENE  ([ugC/g/h] ) :  Alfa pinene  emission factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_APINENE  =  0., 1.35, 1.35, 0.85, 0.95, 0.75, 0.85, 0.60, 1.98, 0.30, 0.30, 0.09, 0.09 
+
+# EM_FACTOR_BPINENE ([ugC/g/h] ) :  Beta pinene  emission factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_BPINENE =  0., 0.30, 0.30, 0.35, 0.25, 0.20, 0.35, 0.12, 0.45, 0.16, 0.12, 0.05, 0.05 
+
+# EM_FACTOR_LIMONENE ([ugC/g/h] ) :  Limonene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_LIMONENE =  0., 0.25, 0.25, 0.20, 0.25, 0.14, 0.20, 0.135, 0.11, 0.19, 0.42, 0.03, 0.03 
+
+# EM_FACTOR_MYRCENE ([ugC/g/h] ) :  Myrcene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_MYRCENE =  0., 0.20, 0.20, 0.12, 0.11, 0.065, 0.12, 0.036, 0.075, 0.08,  0.085, 0.015, 0.015 
+
+# EM_FACTOR_SABINENE ([ugC/g/h] ) :  Sabinene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_SABINENE =  0., 0.20, 0.20, 0.12, 0.17, 0.70, 0.12, 0.50, 0.09, 0.085, 0.075, 0.02, 0.02 
+
+# EM_FACTOR_CAMPHENE  ([ugC/g/h] ) :  Camphene  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_CAMPHENE  =  0., 0.15, 0.15, 0.10, 0.10, 0.01, 0.10, 0.01, 0.07, 0.07, 0.08, 0.01, 0.01 
+
+# EM_FACTOR_3CARENE  ([ugC/g/h] ) :  3-Carene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_3CARENE  =  0., 0.13, 0.13, 0.42, 0.02, 0.055, 0.42,0.025, 0.125, 0.085, 0.085, 0.065, 0.065 
+
+# EM_FACTOR_TBOCIMENE ([ugC/g/h] ) :  T-beta-ocimene  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_TBOCIMENE =  0., 0.25, 0.25, 0.13, 0.09, 0.26, 0.13, 0.20, 0.085, 0.18, 0.18, 0.01, 0.01 
+
+# EM_FACTOR_OTHERMONOT ([ugC/g/h] ) :  Other monoterpenes  emission factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_OTHERMONOT =  0., 0.17, 0.17, 0.11, 0.11, 0.125, 0.11, 0.274, 0.01, 0.15, 0.155, 0.035, 0.035 
+
+# EM_FACTOR_SESQUITERP  ([ugC/g/h] ) :  Sesquiterpenes  emission factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_SESQUITERP  =  0., 0.45, 0.45, 0.13, 0.3, 0.36, 0.15, 0.3, 0.25, 0.6, 0.6, 0.08, 0.08 
+
+# C_BETA_MONO  ([]) :  Monoterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_MONO  =  0.1 
+
+# C_BETA_SESQ  ([]) :  Sesquiterpenes temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_SESQ  =  0.17 
+
+# C_BETA_METH  ([]) :  Methanol temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_METH  =  0.08 
+
+# C_BETA_ACET  ([]) :  Acetone temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_ACET  =  0.1 
+
+# C_BETA_OXYVOC  ([]) :  Other oxygenated BVOC temperature dependency coefficient 	{CHEMISTRY_BVOC}
+C_BETA_OXYVOC  =  0.13 
+
+# EM_FACTOR_ORVOC ([ugC/g/h]  ) :  ORVOC emissions factor  	{CHEMISTRY_BVOC }
 EM_FACTOR_ORVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{DIFFUCO_OK_INCA}
+# EM_FACTOR_OVOC ([ugC/g/h]        ) :  OVOC emissions factor 	{CHEMISTRY_BVOC}
 EM_FACTOR_OVOC =  0., 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5, 1.5 
 
-# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_MBO =  0., 0., 0., 20.0, 0., 0., 0., 0., 0., 0., 0., 0., 0. 
-
-# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{DIFFUCO_OK_INCA }
-EM_FACTOR_METHANOL =  0., 0.6, 0.6, 1.8, 0.9, 0.6, 1.8, 1.8, 1.8, 0.6, 0.9, 2., 2. 
-
-# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETONE =  0., 0.29, 0.29, 0.87, 0.43, 0.29, 0.87, 0.87, 0.87, 0.29, 0.43, 0.07, 0.07  
-
-# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{DIFFUCO_OK_INCA}
-EM_FACTOR_ACETAL =  0., 0.1, 0.1, 0.3, 0.15, 0.1, 0.3, 0.3, 0.3, 0.1, 0.15, 0.025, 0.025 
-
-# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_FORMAL =  0., 0.07, 0.07, 0.2, 0.1, 0.07, 0.2, 0.2, 0.2, 0.07, 0.1, 0.017, 0.017 
-
-# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{DIFFUCO_OK_INCA }
-EM_FACTOR_ACETIC =  0., 0.002, 0.002, 0.006, 0.003, 0.002, 0.006, 0.006, 0.006, 0.002, 0.003, 0.0005, 0.0005 
-
-# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{DIFFUCO_OK_INCA}
-EM_FACTOR_FORMIC =  0., 0.01, 0.01, 0.03, 0.015, 0.01, 0.03, 0.03, 0.03, 0.01, 0.015, 0.0025, 0.0025  
-
-# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_MBO ([ugC/g/h]  ) :  MBO emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_MBO =  0., 2.e-5, 2.e-5, 1.4, 2.e-5, 2.e-5, 0.14, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5, 2.e-5 
+
+# EM_FACTOR_METHANOL ([ugC/g/h]  ) :  Methanol emissions factor  	{CHEMISTRY_BVOC }
+EM_FACTOR_METHANOL =  0., 0.8, 0.8, 1.8, 0.9, 1.9, 1.8, 1.8, 1.8, 0.7, 0.9, 2., 2. 
+
+# EM_FACTOR_ACETONE ([ugC/g/h]     ) :  Acetone emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETONE =  0., 0.25, 0.25, 0.3, 0.2, 0.33, 0.3, 0.25, 0.25, 0.2, 0.2, 0.08, 0.08 
+
+# EM_FACTOR_ACETAL ([ugC/g/h]  ) :  Acetaldehyde emissions factor  	{CHEMISTRY_BVOC}
+EM_FACTOR_ACETAL =  0., 0.2, 0.2, 0.2, 0.2, 0.25, 0.25, 0.16, 0.16, 0.12, 0.12, 0.035, 0.02 
+
+# EM_FACTOR_FORMAL ([ugC/g/h]  ) :  Formaldehyde emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_FORMAL =  0., 0.04, 0.04, 0.08, 0.04, 0.04, 0.04, 0.04, 0.04, 0.025, 0.025, 0.013, 0.013 
+
+# EM_FACTOR_ACETIC ([ugC/g/h]  ) :  Acetic Acid emissions factor 	{CHEMISTRY_BVOC }
+EM_FACTOR_ACETIC =  0., 0.025, 0.025,0.025,0.022,0.08,0.025,0.022,0.013,0.012,0.012,0.008,0.008 
+
+# EM_FACTOR_FORMIC ([ugC/g/h]  ) :  Formic Acid emissions factor 	{CHEMISTRY_BVOC}
+EM_FACTOR_FORMIC =  0., 0.015, 0.015, 0.02, 0.02, 0.025, 0.025, 0.015, 0.015,0.010,0.010,0.008,0.008 
+
+# EM_FACTOR_NO_WET ([ngN/m^2/s]) :  NOx emissions factor wet soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_WET =  0., 2.6, 0.06, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.36, 0.36, 0.36, 0.36 
 
-# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{DIFFUCO_OK_INCA}
+# EM_FACTOR_NO_DRY ([ngN/m^2/s] ) :  NOx emissions factor dry soil emissions and exponential dependancy factor  	{CHEMISTRY_BVOC}
 EM_FACTOR_NO_DRY =  0., 8.60, 0.40, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 2.65, 2.65, 2.65, 2.65 
 
-# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{DIFFUCO_OK_INCA }
+# LARCH ([-]  ) :  Larcher 1991 SAI/LAI ratio 	{CHEMISTRY_BVOC }
 LARCH =  0., 0.015, 0.015, 0.003, 0.005, 0.005, 0.003, 0.005, 0.003, 0.005, 0.005, 0.008, 0.008 
 
@@ -469,9 +568,18 @@
 SLA =  1.5E-2, 1.53E-2, 2.6E-2, 9.26E-3, 2E-2, 2.6E-2, 9.26E-3, 2.6E-2, 1.9E-2, 2.6E-2, 2.6E-2, 2.6E-2, 2.6E-2 
 
+# AVAILABILITY_FACT  ([-]   ) :  Calculate dynamic mortality in lpj_gap, pft dependent parameter 	{OK_STOMATE }
+AVAILABILITY_FACT  =  -9999., 0.14, 0.14, 0.10, 0.10, 0.10, 0.05, 0.05, 0.05, -9999., -9999., -9999., -9999.  
+
+# R0  ([-]    ) :  Standard root allocation  	{OK_STOMATE }
+R0  =  -9999., .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
+
 # S0  ([-]    ) :  Standard sapwood allocation  	{OK_STOMATE }
 S0  =  -9999., .25, .25, .30, .30, .30, .30, .30, .30, .30, .30, .30, .30 
 
+# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE}
+FRAC_GROWTHRESP =  -9999., 0.35, 0.35, 0.28, 0.28, 0.28, 0.35, 0.35, 0.35, 0.28, 0.28, 0.28, 0.28 
+
 # MAINT_RESP_SLOPE_C ([-]) :  slope of maintenance respiration coefficient (1/K), constant c of aT^2+bT+c , tabulated 	{OK_STOMATE}
-MAINT_RESP_SLOPE_C =  -9999., .20, .20, .16, .16, .16, .16, .16, .16, .16, .12, .16, .12  
+MAINT_RESP_SLOPE_C =  -9999., 0.12, 0.12, 0.16, 0.16, 0.16, 0.25, 0.25, 0.25, 0.16, 0.12, 0.16, 0.12 
 
 # MAINT_RESP_SLOPE_B ([-]) :  slope of maintenance respiration coefficient (1/K), constant b of aT^2+bT+c , tabulated 	{OK_STOMATE}
@@ -520,6 +628,9 @@
 COEFF_LCCHANGE_100 =  -9999., 0., 0., 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0., 0.104, 0. 
 
+# LAI_MAX_TO_HAPPY ([-]) :  threshold of LAI below which plant uses carbohydrate reserves 	{OK_STOMATE}
+LAI_MAX_TO_HAPPY =  -9999., .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5, .5  
+
 # LAI_MAX ([m^2/m^2]) :  maximum LAI, PFT-specific 	{OK_STOMATE}
-LAI_MAX =  -9999., 7., 7., 5., 5., 5., 4.5, 4.5, 3.0, 2.5, 2.5, 5.,5.  
+LAI_MAX =  -9999., 7.0, 5.0, 5.0, 4.0, 5.0, 3.5, 4.0, 3.0, 2.5, 2.0, 5.0, 5.0 
 
 # PHENO_TYPE ([-]) :  type of phenology, 0 	{OK_STOMATE}
@@ -535,4 +646,7 @@
 PHENO_GDD_CRIT_A =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0.03125,  0., 0., 0. 
 
+# PHENO_MOIGDD_T_CRIT ([C]) :  Average temperature threashold for C4 grass used in pheno_moigdd 	{OK_STOMATE}
+PHENO_MOIGDD_T_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 22.0, -9999., -9999. 
+
 # NGD_CRIT ([days]) :  critical ngd, tabulated. Threshold -5 degrees 	{OK_STOMATE}
 NGD_CRIT =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., 0., -9999., -9999., -9999., -9999., -9999. 
@@ -550,4 +664,7 @@
 TAU_SAP =  -9999., 730., 730., 730., 730., 730., 730., 730., 730., -9999., -9999., -9999., -9999. 
 
+# TAU_LEAFINIT ([days]) :  time to attain the initial foliage using the carbohydrate reserve 	{OK_STOMATE}
+TAU_LEAFINIT =  -9999., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10., 10. 
+
 # TAU_FRUIT ([days]) :  fruit lifetime 	{OK_STOMATE}
 TAU_FRUIT =  -9999., 90., 90., 90., 90., 90., 90., 90., 90., -9999., -9999., -9999., -9999. 
@@ -604,4 +721,7 @@
 GDD_SENESCENCE =  -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., -9999., 950., 4000. 
 
+# ALWAYS_INIT ([BOOLEAN]) :  Take carbon from atmosphere if carbohydrate reserve too small 	{OK_STOMATE}
+ALWAYS_INIT =  y, y, y, y, y, y, y, y, y, y, n, y, y 
+
 # RESIDENCE_TIME ([years]) :  residence time of trees 	{OK_DGVM and NOT(LPJ_GAP_CONST_MORT)}
 RESIDENCE_TIME =  -9999., 30.0, 30.0, 40.0, 40.0, 40.0, 80.0, 80.0, 80.0, 0.0, 0.0, 0.0, 0.0  
@@ -619,6 +739,6 @@
 TREAT_EXPANSION =  n 
 
-# LPJ_GAP_CONST_MORT ([FLAG]) :  prescribe mortality if not using DGVM? 	{OK_STOMATE}
-LPJ_GAP_CONST_MORT =  y 
+# LPJ_GAP_CONST_MORT ([FLAG]) :  Constant mortality 	{OK_STOMATE AND NOT OK_DGVM}
+LPJ_GAP_CONST_MORT =  y/n depending on OK_DGVM 
 
 # HARVEST_AGRI ([FLAG]) :  Harvest model for agricultural PFTs. 	{OK_STOMATE }
@@ -626,5 +746,5 @@
 
 # FIRE_DISABLE ([FLAG]) :  no fire allowed 	{OK_STOMATE }
-FIRE_DISABLE =  n 
+FIRE_DISABLE =  y 
 
 # SPINUP_ANALYTIC (BOOLEAN    ) :  Activation of the analytic resolution of the spinup. 	{OK_STOMATE}
@@ -643,26 +763,17 @@
 LAI_MAP =  n 
 
-# SLOWPROC_LAI_OLD_INTERPOL ([FLAG]) :  Flag to use old "interpolation" of LAI 	{LAI_MAP}
-SLOWPROC_LAI_OLD_INTERPOL =  n 
-
-# LAND_USE ([FLAG]) :  Read a land_use vegetation map 	{OK_SECHIBA or OK_STOMATE}
-LAND_USE =  y 
-
-# VEGET_REINIT ([FLAG] ) :  booleen to indicate that a new LAND USE file will be used. 	{LAND_USE}
+# VEGET_REINIT ([FLAG] ) :  Reset veget_year counter (obsolet) 	{VEGET_UPDATE > 0Y}
 VEGET_REINIT =  y 
 
-# LAND_COVER_CHANGE ([FLAG] ) :  treat land use modifications 	{LAND_USE}
-LAND_COVER_CHANGE =  n 
-
-# VEGET_YEAR ([FLAG] ) :  Year of the land_use vegetation map to be read 	{LAND_USE}
+# VEGETMAP_RESET ([FLAG] ) :  Flag to change vegetation map without activating LAND USE change for carbon fluxes and reset carbon related variables to zero 	{}
+VEGETMAP_RESET =  n 
+
+# VEGET_YEAR ([FLAG] ) :  Year of the vegetation map to be read 	{}
 VEGET_YEAR =  1 
 
-# SLOWPROC_VEGET_OLD_INTERPOL ([FLAG] ) :  Flag to use old "interpolation" of vegetation map. 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-SLOWPROC_VEGET_OLD_INTERPOL =  n 
-
-# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA or HYDROL_CWRR}
+# MAXMASS_SNOW ([kg/m^2]  ) :  The maximum mass of a snow 	{OK_SECHIBA}
 MAXMASS_SNOW =  3000. 
 
-# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA or HYDROL_CWRR}
+# SNOWCRI ([kg/m^2]  ) :  Sets the amount above which only sublimation occures  	{OK_SECHIBA}
 SNOWCRI =  1.5 
 
@@ -674,8 +785,20 @@
 
 # SNOW_TRANS ([m]   ) :  Transformation time constant for snow 	{OK_SECHIBA}
-SNOW_TRANS =  0.3 
-
-# Z0_OVER_HEIGHT ([-]   ) :  to get z0 from height  	{OK_SECHIBA }
-Z0_OVER_HEIGHT =  1/16. 
+SNOW_TRANS =  0.2 
+
+# OK_NUDGE_MC ([FLAG]) :  Activate nudging of soil moisture 	{}
+OK_NUDGE_MC =  n 
+
+# NUDGE_TAU_MC ([-]) :  Relaxation time for nudging of soil moisture expressed in fraction of the day 	{OK_NUDGE_MC}
+NUDGE_TAU_MC =  1 
+
+# OK_NUDGE_SNOW ([FLAG]) :  Activate nudging of snow variables 	{}
+OK_NUDGE_SNOW =  n 
+
+# NUDGE_TAU_SNOW ([-]) :  Relaxation time for nudging of snow variables 	{OK_NUDGE_SNOW}
+NUDGE_TAU_SNOW =  1 
+
+# NUDGE_INTERPOL_WITH_XIOS ([FLAG]) :  Activate reading and interpolation with XIOS for nudging fields 	{OK_NUDGE_MC or OK_NUDGE_SNOW}
+NUDGE_INTERPOL_WITH_XIOS =  n 
 
 # HEIGHT_DISPLACEMENT ([m]  ) :  Magic number which relates the height to the displacement height. 	{OK_SECHIBA }
@@ -689,5 +812,5 @@
 
 # TCST_SNOWA ([days]) :  Time constant of the albedo decay of snow 	{OK_SECHIBA }
-TCST_SNOWA =  5.0  
+TCST_SNOWA =  10.0  
 
 # SNOWCRI_ALB ([cm]  ) :  Critical value for computation of snow albedo 	{OK_SECHIBA}
@@ -724,6 +847,6 @@
 ALB_BARE_MODEL =  n 
 
-# Z0CDRAG_AVE ([FLAG]) :  Average method for z0 	{OK_SECHIBA}
-Z0CDRAG_AVE =  y 
+# ALB_BG_MODIS ([FLAG]) :  Read bare soil albedo from file with background MODIS data 	{OK_SECHIBA}
+ALB_BG_MODIS =  y 
 
 # IMPOSE_AZE ([FLAG]) :  Should the surface parameters be prescribed 	{OK_SECHIBA}
@@ -745,4 +868,103 @@
 CONDVEG_EMIS =  1.0 
 
+# ROUGH_DYN ([FLAG]) :  Account for a dynamic roughness height 	{OK_SECHIBA}
+ROUGH_DYN =  y 
+
+# C1 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C1 =  0.32 
+
+# C2 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C2 =  0.264 
+
+# C3 ([-] ) :  Constant used in the formulation of the ratio of  	{ROUGH_DYN}
+C3 =  15.1 
+
+# Cdrag_foliage ([-] ) :  Drag coefficient of the foliage 	{ROUGH_DYN}
+Cdrag_foliage =  0.2 
+
+# Ct ([-] ) :  Heat transfer coefficient of the leaf 	{ROUGH_DYN}
+Ct =  0.01 
+
+# Prandtl ([-] ) :  Prandtl number used in the calculation of Ct* 	{ROUGH_DYN}
+Prandtl =  0.71 
+
+# xansmax  ([-] ) :  maximum snow albedo 	{OK_SECHIBA}
+xansmax  =  0.85 
+
+# xansmin  ([-] ) :  minimum snow albedo 	{OK_SECHIBA}
+xansmin  =  0.50 
+
+# xans_todry  ([S-1] ) :  albedo decay rate for the dry snow  	{OK_SECHIBA}
+xans_todry  =  0.008 
+
+# xans_t  ([S-1] ) :  albedo decay rate for the wet snow  	{OK_SECHIBA}
+xans_t  =  0.24 
+
+# xrhosmax  ([-] ) :  maximum snow density  	{OK_SECHIBA}
+xrhosmax  =  750 
+
+# xwsnowholdmax1 ([-] ) :  snow holding capacity 1 	{OK_SECHIBA}
+xwsnowholdmax1 =  0.03 
+
+# xwsnowholdmax2 ([-] ) :  snow holding capacity 2 	{OK_SECHIBA}
+xwsnowholdmax2 =  0.10 
+
+# xsnowrhohold  ([kg/m3] ) :  snow density  	{OK_SECHIBA}
+xsnowrhohold  =  200.0 
+
+# ZSNOWTHRMCOND1 ([W/m/K] ) :  Thermal conductivity Coef 1 	{OK_SECHIBA}
+ZSNOWTHRMCOND1 =  0.02  
+
+# ZSNOWTHRMCOND2 ([W m5/(kg2 K)] ) :  Thermal conductivity Coef 2 	{OK_SECHIBA}
+ZSNOWTHRMCOND2 =  2.5E-6 
+
+# ZSNOWTHRMCOND_AVAP ([W/m/K] ) :  Thermal conductivity Coef 1 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_AVAP =  -0.06023 
+
+# ZSNOWTHRMCOND_BVAP ([W/m] ) :  Thermal conductivity Coef 2 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_BVAP =  -2.5425 
+
+# ZSNOWTHRMCOND_CVAP ([K] ) :  Thermal conductivity Coef 3 water vapor 	{OK_SECHIBA}
+ZSNOWTHRMCOND_CVAP =  -289.99 
+
+# ZSNOWCMPCT_RHOD ([kg/m3]) :  Snow compaction coefficent 	{OK_SECHIBA}
+ZSNOWCMPCT_RHOD =  150.0 
+
+# ZSNOWCMPCT_ACM ([1/s]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_ACM =  2.8e-6 
+
+# ZSNOWCMPCT_BCM ([1/K]) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_BCM =  0.04 
+
+# ZSNOWCMPCT_CCM ([m3/kg] ) :  Coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_CCM =  460. 
+
+# ZSNOWCMPCT_V0 ([Pa/s]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_V0 =  3.7e7 
+
+# ZSNOWCMPCT_VT ([1/K]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VT =  0.081 
+
+# ZSNOWCMPCT_VR ([m3/kg]) :  Vapor coefficent for the thermal conductivity 	{OK_SECHIBA}
+ZSNOWCMPCT_VR =  0.018 
+
+# CB ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CB =  5.0 
+
+# CC ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CC =  5.0 
+
+# CD ([-] ) :  Constant of the Louis scheme  	{OK_SECHIBA}
+CD =  5.0 
+
+# RAYT_CSTE ([W.m^{-2}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+RAYT_CSTE =  125 
+
+# DEFC_PLUS ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_PLUS =  23.E-3 
+
+# DEFC_MULT ([K.W^{-1}] ) :  Constant in the computation of surface resistance   	{OK_SECHIBA}
+DEFC_MULT =  1.5 
+
 # NLAI ([-]  ) :  Number of LAI levels 	{OK_SECHIBA}
 NLAI =  20 
@@ -755,12 +977,21 @@
 
 # DOWNREGULATION_CO2 ([FLAG]   ) :  Activation of CO2 downregulation 	{OK_SECHIBA}
-DOWNREGULATION_CO2 =  n  
+DOWNREGULATION_CO2 =  y 
 
 # DOWNREGULATION_CO2_BASELEVEL ([ppm]   ) :  CO2 base level 	{OK_SECHIBA }
-DOWNREGULATION_CO2_BASELEVEL =  280. 
+DOWNREGULATION_CO2_BASELEVEL =  380. 
+
+# GB_REF ([s m-1]   ) :  Leaf bulk boundary layer resistance 	{}
+GB_REF =  1./25. 
 
 # CLAYFRACTION_DEFAULT ([-]   ) :  default fraction of clay 	{OK_SECHIBA }
 CLAYFRACTION_DEFAULT =  0.2  
 
+# SANDFRACTION_DEFAULT ([-]   ) :  default fraction of sand 	{OK_SECHIBA }
+SANDFRACTION_DEFAULT =  0.4  
+
+# SILTFRACTION_DEFAULT ([-]   ) :  default fraction of silt 	{OK_SECHIBA }
+SILTFRACTION_DEFAULT =  0.4  
+
 # MIN_VEGFRAC  ([-]  ) :  Minimal fraction of mesh a vegetation type can occupy  	{OK_SECHIBA }
 MIN_VEGFRAC  =  0.001  
@@ -769,8 +1000,8 @@
 STEMPDIAG_BID  =  280. 
 
-# LAI_LEVEL_DEPTH ([-]  ) :   	{OK_CO2}
+# LAI_LEVEL_DEPTH ([-]  ) :   	{}
 LAI_LEVEL_DEPTH =  0.15 
 
-# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{OK_CO2}
+# Oi ([ubar]  ) :  Intercellular oxygen partial pressure 	{}
 Oi =  210000. 
 
@@ -796,7 +1027,4 @@
 FIREFRAC_COEFF  =  0.45, 0.8, 0.6, 0.13 
 
-# AVAILABILITY_FACT  ([-]   ) :   	{OK_STOMATE }
-AVAILABILITY_FACT  =  0.1 
-
 # REF_GREFF ([1/year]  ) :  Asymptotic maximum mortality rate 	{OK_STOMATE }
 REF_GREFF =  0.035 
@@ -805,7 +1033,4 @@
 OK_MINRES =  y 
 
-# TAU_LEAFINIT ([days]  ) :  time to attain the initial foliage using the carbohydrate reserve  	{OK_STOMATE }
-TAU_LEAFINIT =  10. 
-
 # RESERVE_TIME_TREE  ([days]    ) :  maximum time during which reserve is used (trees)  	{OK_STOMATE }
 RESERVE_TIME_TREE  =  30. 
@@ -814,7 +1039,4 @@
 RESERVE_TIME_GRASS  =  20.  
 
-# R0 ([-]  ) :  Standard root allocation  	{OK_STOMATE }
-R0 =  0.3  
-
 # F_FRUIT ([-]    ) :  Standard fruit allocation 	{OK_STOMATE }
 F_FRUIT =  0.1  
@@ -832,7 +1054,4 @@
 Z_NITROGEN =  0.2  
 
-# LAI_MAX_TO_HAPPY ([-]  ) :   	{OK_STOMATE }
-LAI_MAX_TO_HAPPY =  0.5  
-
 # NLIM_TREF  ([C]  ) :   	{OK_STOMATE }
 NLIM_TREF  =  25.  
@@ -877,7 +1096,4 @@
 MASS_RATIO_HEART_SAP =  3. 
 
-# FRAC_GROWTHRESP ([-]) :  fraction of GPP which is lost as growth respiration 	{OK_STOMATE }
-FRAC_GROWTHRESP =  0.28 
-
 # TAU_HUM_MONTH ([days]  ) :  time scales for phenology and other processes 	{OK_STOMATE }
 TAU_HUM_MONTH =  20.  
@@ -1012,4 +1228,7 @@
 MOIST_COEFF =  1.1, 2.4, 0.29 
 
+# MOISTCONT_MIN ([-]) :  minimum soil wetness to limit the heterotrophic respiration 	{OK_STOMATE }
+MOISTCONT_MIN =  0.25 
+
 # FRAC_TURNOVER_DAILY  ([-]) :   	{OK_STOMATE }
 FRAC_TURNOVER_DAILY  =  0.55 
@@ -1018,7 +1237,4 @@
 TAX_MAX =  0.8 
 
-# ALWAYS_INIT ([-]   ) :  take carbon from atmosphere if carbohydrate reserve too small?  	{OK_STOMATE }
-ALWAYS_INIT =  n  
-
 # MIN_GROWTHINIT_TIME  ([days]  ) :  minimum time since last beginning of a growing season 	{OK_STOMATE }
 MIN_GROWTHINIT_TIME  =  300.  
@@ -1073,8 +1289,8 @@
 
 # CARBON_TAU_ISLOW ([days]) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_ISLOW =  5.48 
+CARBON_TAU_ISLOW =  7.0 
 
 # CARBON_TAU_IPASSIVE ([days] ) :  residence times in carbon pools 	{OK_STOMATE }
-CARBON_TAU_IPASSIVE =  241. 
+CARBON_TAU_IPASSIVE =  300. 
 
 # FLUX_TOT_COEFF ([days] ) :  	{OK_STOMATE }
@@ -1084,7 +1300,4 @@
 NEW_TURNOVER_TIME_REF =  20.  
 
-# DT_TURNOVER_TIME  ([days]  ) :   	{OK_STOMATE }
-DT_TURNOVER_TIME  =  10. 
-
 # LEAF_AGE_CRIT_TREF ([days]  ) :   	{OK_STOMATE }
 LEAF_AGE_CRIT_TREF =  20.  
@@ -1174,6 +1387,9 @@
 EVERYWHERE_INIT =  0.05  
 
-# THERMOSOIL_NBLEV ((-)) :  Number of soil level 	{}
-THERMOSOIL_NBLEV =  7 
+# PRINTLEV ([0, 1, 2, 3, 4]) :  Print level for text output 	{}
+PRINTLEV =  2 
+
+# PRINTLEV_modname ([0, 1, 2, 3, 4]) :  Specific print level of text output for the module "modname". Default as PRINTLEV. 	{}
+PRINTLEV_modname =  PRINTLEV 
 
 # DRY_SOIL_HEAT_CAPACITY ([J.m^{-3}.K^{-1}] ) :  Dry soil Heat capacity of soils 	{OK_SECHIBA }
@@ -1195,40 +1411,49 @@
 SNOW_DENSITY =  330.0 
 
-# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
+# NOBIO_WATER_CAPAC_VOLUMETRI ([s/m^2]) :   	{}
 NOBIO_WATER_CAPAC_VOLUMETRI =  150. 
+
+# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
+SECHIBA_QSINT  =  0.02 
+
+# OK_FREEZE ([FLAG]) :  Activate the complet soil freezing scheme 	{OK_SECHIBA }
+OK_FREEZE =  TRUE 
+
+# READ_REFTEMP ([FLAG]) :  Initialize soil temperature using climatological temperature 	{}
+READ_REFTEMP =  True/False depening on OK_FREEZE 
+
+# OK_FREEZE_THERMIX ([FLAG]) :  Activate thermal part of the soil freezing scheme 	{}
+OK_FREEZE_THERMIX =  True if OK_FREEZE else false 
+
+# OK_ECORR ([FLAG]) :  Energy correction for freezing 	{OK_FREEZE_THERMIX}
+OK_ECORR =  True if OK_FREEZE else false 
+
+# OK_FREEZE_THAW_LATENT_HEAT ([FLAG]) :  Activate latent heat part of the soil freezing scheme 	{}
+OK_FREEZE_THAW_LATENT_HEAT =  FALSE  
+
+# POROS ([-] ) :  Soil porosity  	{OK_SECHIBA}
+POROS =  0.41 
+
+# fr_dT ([K] ) :  Freezing window     	{OK_SECHIBA}
+fr_dT =  2.0 
+
+# OK_FREEZE_CWRR ([FLAG]) :  CWRR freezing scheme by I. Gouttevin 	{}
+OK_FREEZE_CWRR =  True if OK_FREEZE else false 
+
+# OK_THERMODYNAMICAL_FREEZING ([FLAG]) :  Calculate frozen fraction thermodynamically  	{OK_FREEZE_CWRR}
+OK_THERMODYNAMICAL_FREEZING =  True 
+
+# CHECK_CWRR ([FLAG]) :  Calculate diagnostics to check CWRR water balance 	{}
+CHECK_CWRR =  n 
+
+# VEGET_UPDATE ([years]) :  Update vegetation frequency: 0Y or 1Y 	{}
+VEGET_UPDATE =  0Y 
+
+# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
+SECHIBA_ZCANOP =  0.5 
 
 # SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
 SECHIBA_QSINT  =  0.1 
 
-# CHOISNEL_DIFF_MIN ([kg/m^2/dt]) :  Diffusion constant for the slow regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MIN =  0.001 
-
-# CHOISNEL_DIFF_MAX ([kg/m^2/dt]) :  Diffusion constant for the fast regime 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_MAX =  0.1 
-
-# CHOISNEL_DIFF_EXP ([-]) :  The exponential in the diffusion law 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_DIFF_EXP =  1.5 
-
-# CHOISNEL_RSOL_CSTE ([s/m^2]) :  Constant in the computation of resistance for bare  soil evaporation  	{OK_SECHIBA and .NOT.(HYDROL_CWRR)}
-CHOISNEL_RSOL_CSTE =  33.E3 
-
-# HCRIT_LITTER ([m]) :  Scaling depth for litter humidity 	{OK_SECHIBA and .NOT.(HYDROL_CWRR) }
-HCRIT_LITTER =  0.08  
-
-# SECHIBA_DAY ([days]) :  Time within the day simulated 	{OK_SECHIBA}
-SECHIBA_DAY =  0.0 
-
-# VEGET_UPDATE ([years]) :  Update vegetation frequency 	{LAND_USE}
-VEGET_UPDATE =  0Y 
-
-# SECHIBA_ZCANOP ([m]) :  Soil level used for canopy development (if STOMATE disactivated) 	{OK_SECHIBA and .NOT. OK_STOMATE  }
-SECHIBA_ZCANOP =  0.5 
-
-# SECHIBA_QSINT  ([m]) :  Interception reservoir coefficient 	{OK_SECHIBA }
-SECHIBA_QSINT  =  0.1 
-
-# DT_SLOW ([seconds]) :  Time step of STOMATE and other slow processes 	{OK_STOMATE}
-DT_SLOW =  86400. 
-
 # SECHIBA_VEGMAX ([-]) :  Maximum vegetation distribution within the mesh (0-dim mode) 	{IMPOSE_VEG}
 SECHIBA_VEGMAX =  0.2, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8, 0.0, 0.0, 0.0 
@@ -1246,4 +1471,7 @@
 CLAY_FRACTION =  0.2 
 
+# SAND_FRACTION ([-] ) :  Fraction of the clay fraction (0-dim mode) 	{IMPOSE_VEG and IMPOSE_SOIL}
+SAND_FRACTION =  0.4 
+
 # REINF_SLOPE ([-]) :  Slope coef for reinfiltration  	{IMPOSE_VEG}
 REINF_SLOPE =  0.1 
@@ -1255,7 +1483,4 @@
 GET_SLOPE =  n 
 
-# LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(LAI_MAP)}
-LAI_FILE =  lai2D.nc 
-
 # LAI_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAI_MAP}
 LAI_FILE =  lai2D.nc 
@@ -1264,18 +1489,6 @@
 RENORM_LAI =  n 
 
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{LAND_USE}
+# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{}
 VEGETATION_FILE =  PFTmap.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG)}
-VEGETATION_FILE =  carteveg5km.nc 
-
-# VEGETATION_FILE ([FILE]) :  Name of file from which the vegetation map is to be read 	{NOT(IMPOSE_VEG) and NOT(LAND_USE)}
-VEGETATION_FILE =  carteveg5km.nc 
 
 # SOILCLASS_FILE ([FILE]) :  Name of file from which soil types are read 	{NOT(IMPOSE_VEG)}
@@ -1288,107 +1501,101 @@
 TOPOGRAPHY_FILE =  cartepente2d_15min.nc 
 
+# WOODHARVEST_FILE ([FILE]) :  Name of file from which the wood harvest will be read 	{DO_WOOD_HARVEST}
+WOODHARVEST_FILE =  woodharvest.nc 
+
 # SOILALB_FILE ([FILE]) :  Name of file from which the bare soil albedo 	{NOT(IMPOSE_AZE)}
 SOILALB_FILE =  soils_param.nc 
 
+# ALB_BG_FILE ([FILE]) :  Name of file from which the background albedo is read  	{ALB_BG_MODIS}
+ALB_BG_FILE =  alb_bg.nc 
+
 # CDRAG_FROM_GCM ([FLAG]) :  Keep cdrag coefficient from gcm. 	{OK_SECHIBA}
 CDRAG_FROM_GCM =  y 
 
-# DIFFUCO_LEAFCI ([ppm]) :  Initial leaf CO2 level if not found in restart 	{OK_SECHIBA}
-DIFFUCO_LEAFCI =  233. 
-
-# ALLOW_WEATHERGEN ([FLAG]) :  Allow weather generator to create data 	{}
-ALLOW_WEATHERGEN =  n 
-
-# FORCING_FILE ([FILE] ) :  Name of file containing the forcing data 	{[-]}
-FORCING_FILE =  forcing_file.nc 
-
-# HYDROL_OK_HDIFF ([FLAG]) :  do horizontal diffusion? 	{OK_SECHIBA and .NOT.(HYDROL_CWRR)  }
-HYDROL_OK_HDIFF =  n 
-
-# HYDROL_SNOW ([kg/m^2]) :  Initial snow mass if not found in restart 	{OK_SECHIBA}
-HYDROL_SNOW =  0.0 
-
-# HYDROL_SNOWAGE ([days]) :  Initial snow age if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOWAGE =  0.0 
-
-# HYDROL_SNOW_NOBIO ([m]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO =  0.0 
-
-# HYDROL_SNOW_NOBIO_AGE ([days]) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA }
-HYDROL_SNOW_NOBIO_AGE =  0.0 
-
-# HYDROL_HUMR ([-]) :  Initial soil moisture stress if not found in restart 	{OK_SECHIBA }
-HYDROL_HUMR =  1.0 
-
-# HYDROL_BQSB ([kg/m^2]) :  Initial restart deep soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_BQSB =  999999.  
-
-# HYDROL_GQSB ([kg/m^2]) :  Initial upper soil moisture if not found in restart 	{OK_SECHIBA }
-HYDROL_GQSB =  0.0 
-
-# HYDROL_DSG ([m]) :  Initial upper reservoir depth if not found in restart 	{OK_SECHIBA }
-HYDROL_DSG =  0.0 
-
-# HYDROL_QSV ([kg/m^2]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA }
-HYDROL_QSV =  0.0 
-
-# HYDROL_DSP ([m]) :  Initial dry soil above upper reservoir if not found in restart 	{OK_SECHIBA }
-HYDROL_DSP =  999999. 
-
-# HYDROL_TAU_HDIFF ([seconds]) :  time scale (s) for horizontal diffusion of water 	{HYDROL_OK_HDIFF}
-HYDROL_TAU_HDIFF =  86400. 
-
-# CHECK_CWRR ([FLAG]) :  Should we check detailed CWRR water balance ? 	{HYDROL_CWRR}
-CHECK_CWRR =  n 
-
-# DO_PONDS ([FLAG]) :  Should we include ponds  	{HYDROL_CWRR}
+# N_FERTIL_FILE (- ) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# N_FERTIL_FILE (-) :  File name 	{CHEMISTRY_BVOC and NOx_FERTILIZERS_USE}
+N_FERTIL_FILE =  orchidee_fertilizer_1995.nc 
+
+# ENERBIL_TSURF (Kelvin [K]) :  Initial temperature if not found in restart 	{OK_SECHIBA}
+ENERBIL_TSURF =  280. 
+
+# ENERBIL_EVAPOT () :  Initial Soil Potential Evaporation 	{OK_SECHIBA       }
+ENERBIL_EVAPOT =  0.0 
+
+# BEDROCK_FLAG ([FLAG]) :  Flag to consider bedrock at deeper layers. 	{}
+BEDROCK_FLAG =  0 
+
+# THERMOSOIL_TPRO (Kelvin [K]) :  Initial soil temperature profile if not found in restart 	{OK_SECHIBA}
+THERMOSOIL_TPRO =  280. 
+
+# SOIL_REFTEMP_FILE ([FILE]) :  File with climatological soil temperature 	{READ_REFTEMP}
+SOIL_REFTEMP_FILE =  reftemp.nc 
+
+# DO_PONDS ([FLAG]) :  Should we include ponds  	{}
 DO_PONDS =  n 
 
-# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{HYDROL_CWRR}
+# FROZ_FRAC_CORR  ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+FROZ_FRAC_CORR  =  1.0 
+
+# MAX_FROZ_HYDRO ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+MAX_FROZ_HYDRO =  1.0 
+
+# SMTOT_CORR ([-]) :  Coefficient for the frozen fraction correction 	{OK_FREEZE}
+SMTOT_CORR =  2.0 
+
+# DO_RSOIL ([FLAG]) :  Should we reduce soil evaporation with a soil resistance 	{}
+DO_RSOIL =  n 
+
+# OK_DYNROOT ([FLAG]) :  Calculate dynamic root profile to optimize soil moisture usage   	{}
+OK_DYNROOT =  n 
+
+# CWRR_N_VANGENUCHTEN ([-]) :  Van genuchten coefficient n 	{}
 CWRR_N_VANGENUCHTEN =  1.89, 1.56, 1.31 
 
-# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{HYDROL_CWRR}
+# CWRR_A_VANGENUCHTEN ([1/mm]  ) :  Van genuchten coefficient a 	{}
 CWRR_A_VANGENUCHTEN =  0.0075, 0.0036, 0.0019 
 
-# VWC_RESIDUAL ([mm]  ) :  Residual soil water content 	{HYDROL_CWRR}
+# VWC_RESIDUAL ([m3/m3]  ) :  Residual soil water content 	{}
 VWC_RESIDUAL =  0.065, 0.078, 0.095 
 
-# VWC_SAT ([-]  ) :  Saturated soil water content 	{HYDROL_CWRR}
+# VWC_SAT ([m3/m3]  ) :  Saturated soil water content 	{}
 VWC_SAT =  0.41, 0.43, 0.41 
 
-# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{HYDROL_CWRR }
+# CWRR_KS  ([mm/d]   ) :  Hydraulic conductivity Saturation 	{}
 CWRR_KS  =  1060.8, 249.6, 62.4 
 
-# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{HYDROL_CWRR}
+# WETNESS_TRANSPIR_MAX ([-]    ) :  Soil moisture above which transpir is max 	{}
 WETNESS_TRANSPIR_MAX =  0.5, 0.5, 0.5 
 
-# DRAINAGE_FACTOR_F ([-]   ) :  Max value of the permeability coeff at the bottom of the soil  	{HYDROL_CWRR}
-DRAINAGE_FACTOR_F =  1.0, 1.0, 1.0  
-
-# VWC_FC  ([-]   ) :  Volumetric water content field capacity 	{HYDROL_CWRR}
+# VWC_FC  ([m3/m3]   ) :  Volumetric water content field capacity 	{}
 VWC_FC  =  0.32, 0.32, 0.32 
 
-# VWC_WP ([-]   ) :  Volumetric water content Wilting pt 	{HYDROL_CWRR}
+# VWC_WP ([m3/m3]   ) :  Volumetric water content Wilting pt 	{}
 VWC_WP =  0.10, 0.10, 0.10  
 
-# VWC_MIN_FOR_WET_ALB ([-]  ) :  Vol. wat. cont. above which albedo is cst 	{HYDROL_CWRR}
+# VWC_MIN_FOR_WET_ALB ([m3/m3]  ) :  Vol. wat. cont. above which albedo is cst 	{}
 VWC_MIN_FOR_WET_ALB =  0.25, 0.25, 0.25 
 
-# VWC_MAX_FOR_DRY_ALB ([-]   ) :  Vol. wat. cont. below which albedo is cst 	{HYDROL_CWRR}
+# VWC_MAX_FOR_DRY_ALB ([m3/m3]   ) :  Vol. wat. cont. below which albedo is cst 	{}
 VWC_MAX_FOR_DRY_ALB =  0.1, 0.1, 0.1 
 
-# HYDROL_MOISTURE_CONTENT () :  Soil moisture on each soil tile and levels 	{HYDROL_CWRR       }
+# HYDROL_MOISTURE_CONTENT ([m3/m3]) :  Soil moisture on each soil tile and levels 	{}
 HYDROL_MOISTURE_CONTENT =  0.3 
 
-# US_INIT () :  US_NVM_NSTM_NSLM 	{HYDROL_CWRR       }
+# US_INIT ([-]) :  US_NVM_NSTM_NSLM 	{}
 US_INIT =  0.0 
 
-# FREE_DRAIN_COEF () :  Coefficient for free drainage at bottom 	{HYDROL_CWRR       }
-FREE_DRAIN_COEF =  1.0, 1.0, 1.0 
-
-# WATER_TO_INFILT () :  Water to be infiltrated on top of the soil 	{HYDROL_CWRR    }
+# ZWT_FORCE ([m]) :  Prescribed water depth, dimension nstm 	{}
+ZWT_FORCE =  -9999. -9999. -9999. 
+
+# FREE_DRAIN_COEF ([-]) :  Coefficient for free drainage at bottom, dimension nstm 	{}
+FREE_DRAIN_COEF =  1.0 1.0 1.0 
+
+# WATER_TO_INFILT ([mm]) :  Water to be infiltrated on top of the soil 	{}
 WATER_TO_INFILT =  0.0 
 
-# EVAPNU_SOIL () :  Bare soil evap on each soil if not found in restart 	{HYDROL_CWRR  }
+# EVAPNU_SOIL ([mm]) :  Bare soil evap on each soil if not found in restart 	{}
 EVAPNU_SOIL =  0.0 
 
@@ -1396,39 +1603,39 @@
 HYDROL_SNOW =  0.0 
 
-# HYDROL_SNOWAGE () :  Initial snow age if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOWAGE (***) :  Initial snow age if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOWAGE =  0.0 
 
-# HYDROL_SNOW_NOBIO () :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO ([mm]) :  Initial snow amount on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO =  0.0 
 
-# HYDROL_SNOW_NOBIO_AGE () :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
+# HYDROL_SNOW_NOBIO_AGE (***) :  Initial snow age on ice, lakes, etc. if not found in restart 	{OK_SECHIBA}
 HYDROL_SNOW_NOBIO_AGE =  0.0 
 
-# HYDROL_QSV () :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
+# HYDROL_QSV ([mm]) :  Initial water on canopy if not found in restart 	{OK_SECHIBA}
 HYDROL_QSV =  0.0 
 
-# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_N0  =  0.95 
-
-# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{HYDROL_CWRR }
-CWRR_NKS_POWER =  0.34 
-
-# CWRR_AKS_A0  ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_A0  =  0.00012 
-
-# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{HYDROL_CWRR }
-CWRR_AKS_POWER =  0.53 
-
-# KFACT_DECAY_RATE ([-]) :  Factor for Ks decay with depth 	{HYDROL_CWRR }
+# CWRR_NKS_N0  ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_N0  =  0.0 
+
+# CWRR_NKS_POWER ([-]) :  fitted value for relation log((n-n0)/(n_ref-n0))  	{}
+CWRR_NKS_POWER =  0.0 
+
+# CWRR_AKS_A0  ([1/mm]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_A0  =  0.0 
+
+# CWRR_AKS_POWER ([-]) :  fitted value for relation log((a-a0)/(a_ref-a0))  	{}
+CWRR_AKS_POWER =  0.0 
+
+# KFACT_DECAY_RATE ([1/m]) :  Factor for Ks decay with depth 	{}
 KFACT_DECAY_RATE =  2.0 
 
-# KFACT_STARTING_DEPTH ([-]) :  Depth for compacted value of Ks  	{HYDROL_CWRR }
+# KFACT_STARTING_DEPTH ([m]) :  Depth for compacted value of Ks  	{}
 KFACT_STARTING_DEPTH =  0.3 
 
-# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{HYDROL_CWRR }
+# KFACT_MAX ([-]) :  Maximum Factor for Ks increase due to vegetation 	{}
 KFACT_MAX =  10.0 
 
-# ROUTING_TIMESTEP ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
-ROUTING_TIMESTEP =  86400. 
+# DT_ROUTING  ([seconds]) :  Time step of the routing scheme 	{RIVER_ROUTING}
+DT_ROUTING  =  86400. 
 
 # ROUTING_RIVERS ([-]) :  Number of rivers  	{RIVER_ROUTING}
@@ -1445,11 +1652,11 @@
 
 # SLOW_TCST ([days]) :  Time constant for the slow reservoir  	{RIVER_ROUTING }
-SLOW_TCST =  n 
+SLOW_TCST =  25.0  
 
 # FAST_TCST ([days]) :  Time constant for the fast reservoir  	{RIVER_ROUTING }
-FAST_TCST =  fast_tcst_cwrr or fast_tcst_chois depending on flag HYDROL_CWRR 
+FAST_TCST =  3.0  
 
 # STREAM_TCST ([days]) :  Time constant for the stream reservoir  	{RIVER_ROUTING}
-STREAM_TCST =  stream_tcst_cwrr or stream_tcst_chois depending on flag HYDROL_CWRR 
+STREAM_TCST =  0.24 
 
 # FLOOD_TCST ([days]) :  Time constant for the flood reservoir  	{RIVER_ROUTING}
@@ -1471,9 +1678,12 @@
 POND_CRI =  2000. 
 
+# MAX_LAKE_RESERVOIR ([kg/m2(routing area)] ) :  Maximum limit of water in lake_reservoir 	{RIVER_ROUTING}
+MAX_LAKE_RESERVOIR =  7000 
+
 # RIVER_DESC ([FLAG]) :  Writes out a description of the rivers 	{RIVER_ROUTING}
 RIVER_DESC =  n 
 
 # RIVER_DESC_FILE ([FILE]) :  Filename in which we write the description of the rivers. If suffix is ".nc" a netCDF file is created 	{RIVER_DESC}
-RIVER_DESC_FILE =  river_desc.txt 
+RIVER_DESC_FILE =  river_desc.nc 
 
 # ROUTING_FILE ([FILE]) :  Name of file which contains the routing information 	{RIVER_ROUTING}
@@ -1504,11 +1714,8 @@
 FORCESOIL_NB_YEAR =  1 
 
-# BAVARD ([-]) :  level of online diagnostics in STOMATE (0-4) 	{OK_STOMATE}
-BAVARD =  1 
-
-# REFTEMP_FILE ([FILE]) :  Name of file from which the reference temperature is read 	{OK_STOMATE}
-REFTEMP_FILE =  reftemp.nc 
-
 # XIOS_ORCHIDEE_OK ([FLAG]) :  Use XIOS for writing diagnostics file 	{}
-XIOS_ORCHIDEE_OK =  n 
-
+XIOS_ORCHIDEE_OK =  y  
+
+# XIOS_INTERPOLATION ([FLAG]) :  Actiave reading and intrepolation using XIOS 	{XIOS_ORCHIDEE_OK}
+XIOS_INTERPOLATION =  n 
+
