# # ChangeLog for branches # # Generated by Trac 1.0.1 # 2024-07-11T22:20:57+02:00 Fri, 18 Oct 2019 13:19:33 GMT sebastiaan.luyssaert [6254] DEV: Added a hack to make the model run past #597 Thu, 17 Oct 2019 13:28:40 GMT sebastiaan.luyssaert [6253] DEV: hack_lcc is no longer used and was therefore set to SKIP Thu, 17 Oct 2019 12:45:04 GMT sebastiaan.luyssaert [6252] DEV: bug fix for ticket 600 following r6235 of the trunk Thu, 17 Oct 2019 11:13:16 GMT sebastiaan.luyssaert [6251] DEV: removed arguments from the call to stomate_data that were not used. ... Thu, 17 Oct 2019 07:24:38 GMT matthew.mcgrath [6250] DEV: Catching a divide by zero in phenology with an informative check. Mon, 14 Oct 2019 17:15:58 GMT pascal.maugis [6248] Deep modifications to account for ambiguities in variables Mon, 14 Oct 2019 07:52:44 GMT anne-sofie.lanso [6247] Partial BUGFIX for #277, two variable were added to the restart file, ... Sun, 13 Oct 2019 16:43:29 GMT sebastiaan.luyssaert [6246] DEV: tested with and without land cover change. Many fixes and changes ... Fri, 11 Oct 2019 13:59:37 GMT albert.jornet [6245] New: orchidee mict version 8.9.1 Fri, 11 Oct 2019 13:45:29 GMT albert.jornet [6244] Fix: change name to vegetation file test so it is clashing with ... Fri, 11 Oct 2019 12:45:03 GMT albert.jornet [6243] Change: adapt Obelix arch file so It does not use hardcoded paths Fix: ... Fri, 11 Oct 2019 12:07:20 GMT albert.jornet [6242] New: allow JEAN-ZAY compilation files Change: from revisions ... Thu, 10 Oct 2019 15:19:30 GMT albert.jornet [6241] New: unit test for restget_opp_rXd and restput_opp_rXd ioipsl ... Thu, 10 Oct 2019 08:48:41 GMT albert.jornet [6240] Fix: properly calculate the array indices for 5 dimensions for the ... Wed, 09 Oct 2019 14:34:12 GMT albert.jornet [6239] Clean: remove commented code Wed, 09 Oct 2019 14:29:51 GMT albert.jornet [6238] New: introduce a test for parallel netcdf. This is related to the ... Fri, 04 Oct 2019 12:20:33 GMT albert.jornet [6237] Fix: do not allow anymore the use of longer names than allowed in IOIPSL ... Fri, 04 Oct 2019 12:12:15 GMT albert.jornet [6236] Improvement: ticket:602 Thu, 03 Oct 2019 14:17:18 GMT josefine.ghattas [6234] Replaced approximation of current_spacing by SQRT(area(ipts)). See ... Thu, 03 Oct 2019 13:32:28 GMT josefine.ghattas [6233] Removed resolution from argument list when not used and replaced some ... Thu, 03 Oct 2019 12:07:59 GMT josefine.ghattas [6232] Replaced resolution(ipts,1)*resolution(ipts,2) with area(ipts). ... Tue, 01 Oct 2019 14:43:37 GMT josefine.ghattas [6231] Add context_input_orchidee.xml file to output files. Tue, 01 Oct 2019 14:16:31 GMT josefine.ghattas [6230] Updated ORCHIDEE_OL folder with changes done on the trunk between ... Mon, 30 Sep 2019 13:01:00 GMT sebastiaan.luyssaert [6226] DEV: only tested on a very specific case. Fixes a bug where deciduous ... Mon, 30 Sep 2019 11:33:06 GMT josefine.ghattas [6223] Updated with changes done on the trunk between rev 6210:6222 (mainly ... Fri, 27 Sep 2019 15:06:43 GMT josefine.ghattas [6219] Updated with changes done in the trunk between revision 6035:6210. ... Fri, 27 Sep 2019 13:17:09 GMT albert.jornet [6218] Change: compile Orchidee using the environment modules. They were ... Fri, 27 Sep 2019 13:07:33 GMT josefine.ghattas [6217] Updated with changes done in the trunk between revision 5990:6033. ... Wed, 25 Sep 2019 11:56:24 GMT matthew.mcgrath [6213] DEV: Bug fix in albedo that I introduced last week Wed, 25 Sep 2019 09:02:29 GMT josefine.ghattas [6211] * branches/ORCHIDEE_2_2/ORCHIDEE/arch/arch-X64_JEANZAY.fcm (copied) * branches/ORCHIDEE_2_2/ORCHIDEE/arch/arch-X64_JEANZAY.path (copied) Added arch files for Jean-Zay new computer at IDRIS. Same as added on ... Fri, 20 Sep 2019 18:03:02 GMT jinfeng.chang [6208] Correction for mass conservation following r5090 and r5536 of trunk ... Fri, 20 Sep 2019 16:12:37 GMT matthew.mcgrath [6207] DEV: Fixed an inconsistency with the way albedo and light absorption ... Fri, 20 Sep 2019 13:06:40 GMT matthew.mcgrath [6206] DEV: Externalizing a parameter used in albedo Fri, 20 Sep 2019 10:58:01 GMT albert.jornet [6205] Fix: bug on initialization of convflux, cflux_prod10 and cflux_prod100. ... Fri, 20 Sep 2019 09:08:12 GMT matthew.mcgrath [6204] DEV: after profiling, should be a small speed-up for some situations. ... Fri, 20 Sep 2019 07:53:09 GMT jina.jeong [6203] DEV: tested for 2 pixels: 100yr-long simulations. Changes were made to ... Thu, 19 Sep 2019 12:39:27 GMT anne.cozic [6202] initialize two variables that are used before to be calculated at the ... Thu, 19 Sep 2019 12:37:32 GMT anne.cozic [6201] merge with rev 4361 of trunk Wed, 18 Sep 2019 14:44:53 GMT albert.jornet [6200] Fix: remove useless code Wed, 18 Sep 2019 14:12:49 GMT albert.jornet [6199] Fix: on bm_to_litter calculation in lcchange_main and avoiding ... Wed, 18 Sep 2019 13:49:23 GMT albert.jornet [6198] Improvement: add more information when a netcdf error raises Wed, 18 Sep 2019 12:46:10 GMT anne-sofie.lanso [6197] FIX: the labile pool was not included in the calculations for ... Tue, 17 Sep 2019 11:35:19 GMT albert.jornet [6196] Fix: no need for allocatable variable when its length is already ... Fri, 13 Sep 2019 06:57:23 GMT sebastiaan.luyssaert [6195] DEV: quick fix for an inconsistency in the variable dimensions of soil ... Wed, 11 Sep 2019 04:23:44 GMT bertrand.guenet [6193] integration of 13C and 14C into the main branche Wed, 11 Sep 2019 04:23:33 GMT bertrand.guenet [6192] svn mistake Wed, 11 Sep 2019 04:22:05 GMT bertrand.guenet [6191] integration of 13C and 14C into the main branche Fri, 06 Sep 2019 15:56:38 GMT josefine.ghattas [6189] * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/diffuco.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/hydrol.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/routing.f90 (modified) As done in the trunk rev [6188]: Corrections done by A. Jornet. These ... Sun, 01 Sep 2019 14:42:19 GMT sebastiaan.luyssaert [6185] DEV: fixes tickets #592 and #593 Thu, 29 Aug 2019 09:59:21 GMT jina.jeong [6179] This is temporal. DIA_MAX for tropical trees decreased to avoid a ... Thu, 29 Aug 2019 09:04:51 GMT jina.jeong [6178] self thinning, add start_by_grad Thu, 29 Aug 2019 08:37:51 GMT jina.jeong [6177] New initialization method is added. It can be off by the flag ... Tue, 27 Aug 2019 14:52:54 GMT daniel.goll [6176] revised leaf nutrient (N,P) - Vcmax,Jmax relationship. new ... Fri, 23 Aug 2019 19:40:24 GMT sebastiaan.luyssaert [6175] DEV: fix for ticket #589. When checking the conservation of the surface ... Fri, 23 Aug 2019 14:40:39 GMT sebastiaan.luyssaert [6174] DEV: refining the solution for ticket #590 Fri, 23 Aug 2019 13:53:45 GMT anne-sofie.lanso [6173] ADD: The context_input_orchidee.xml was missing from the analytic spinup ... Fri, 23 Aug 2019 11:18:58 GMT sebastiaan.luyssaert [6172] DEV: addresses #590. There was no bug in the code. The condition to ... Wed, 21 Aug 2019 17:16:15 GMT sebastiaan.luyssaert [6171] DEV: fix #588 following this fix the model could run for 100 years over ... Sat, 17 Aug 2019 05:18:44 GMT sebastiaan.luyssaert [6170] DEV: fixes ticket #587 Thu, 15 Aug 2019 13:50:50 GMT sebastiaan.luyssaert [6168] DEV: fixes ticket #545 through small changes in the atm_to_bm ... Thu, 15 Aug 2019 06:40:51 GMT sebastiaan.luyssaert [6167] DEV: hack_circ_class was removed from the code in r6166, now it is ... Thu, 15 Aug 2019 06:37:30 GMT sebastiaan.luyssaert [6166] DEV: code changes fix ticket #576 and include subsequent cleaning. ... Wed, 14 Aug 2019 17:16:20 GMT sebastiaan.luyssaert [6165] DEV: many little typographical fixes, replacing ipslerr by ipslerr_p and ... Wed, 14 Aug 2019 17:13:53 GMT sebastiaan.luyssaert [6164] DEV: fixes ticket #585 Wed, 14 Aug 2019 10:38:08 GMT josefine.ghattas [6160] * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/intersurf.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/sechiba.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_stomate/stomate.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_stomate/stomate_io.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/field_def_orchidee.xml (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/file_def_orchidee.xml (modified) Corrected errors on variables zcarblu and znetco2. These variables are ... Mon, 05 Aug 2019 09:11:40 GMT fabienne.maignan [6151] * branches/ORCHIDEE_2_2/ORCHIDEE/src_parallel/xios_orchidee.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_stomate/stomate_lpj.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_stomate/stomate_npp.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/context_orchidee.xml (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/field_def_orchidee.xml (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/file_def_orchidee.xml (modified) Adding outputs for respiration of biomass compartments Tue, 30 Jul 2019 15:35:35 GMT josefine.ghattas [6145] * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/slowproc.f90 (modified) Correction related to VEGET_UPDATE and small fractions as done in the ... Tue, 30 Jul 2019 15:29:11 GMT josefine.ghattas [6144] * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/slowproc.f90 (modified) As done in the trunk rev [6143]: Corrected bug on siltfraction when ... Tue, 30 Jul 2019 08:13:58 GMT jina.jeong [6142] DEV: tested for one pixel for 150 years. Changes in growth_fun_all: The ... Tue, 23 Jul 2019 12:45:05 GMT albert.jornet [6134] Clean remove dev code Tue, 23 Jul 2019 09:22:46 GMT albert.jornet [6133] Clean: upgrade to its own subroutine when transfering variables from the ... Mon, 22 Jul 2019 13:37:19 GMT haicheng.zhang [6132] * branches/publications/ORCHIDEE-MUSLE (deleted) delete a wrong version Mon, 22 Jul 2019 13:34:49 GMT haicheng.zhang [6131] * branches/publications/ORCHIDEE-MUSLE-r6129 (copied) Copy ORCHIDEE-MUSLE_r6129 for publication Mon, 22 Jul 2019 13:31:41 GMT haicheng.zhang [6130] * branches/publications/ORCHIDEE-MUSLE (copied) Erosion Mon, 15 Jul 2019 12:11:19 GMT anne-sofie.lanso [6112] DEV: litter raking does now also include nitrogen. Tested for a single ... Fri, 12 Jul 2019 09:21:22 GMT albert.jornet [6111] Fix: deepC_a/s/p variables are also required to be reinitialized when ... Thu, 11 Jul 2019 14:33:33 GMT anne-sofie.lanso [6110] CORRECT the flag of litter raking to what is actually read be the model. Thu, 11 Jul 2019 13:50:39 GMT albert.jornet [6109] Fix+Merge: merge revision [3094/trunk/ORCHIDEE]. Related to ticket:107. ... Thu, 11 Jul 2019 10:41:08 GMT anne-sofie.lanso [6108] DEV: Transfer of code from obelix to IRENE for testing and further ... Tue, 09 Jul 2019 09:46:47 GMT albert.jornet [6107] Fix: wrong order of veget_max_cov variables from lcchange_main. Found by ... Mon, 08 Jul 2019 06:58:04 GMT matthew.mcgrath [6105] DEV: Changing some of the MLEB flags to match those set by ... Sun, 07 Jul 2019 12:11:32 GMT sebastiaan.luyssaert [6104] DEV: respiration parameters tuned over Europe and eavluated over the ... Fri, 05 Jul 2019 13:36:20 GMT josefine.ghattas [6103] * branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/context_routing_orchidee.xml (added) * branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/iodef.xml (modified) Ticket #581 : added files missing in previous commit [6102] Fri, 05 Jul 2019 12:52:05 GMT josefine.ghattas [6102] * branches/ORCHIDEE_2_2/ORCHIDEE/orchidee.default (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/routing.f90 (modified) * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/routing_simple.f90 (added) * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/routing_wrapper.f90 (added) * branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/sechiba.f90 (modified) Added routing_simple module and routing_wrapper. No changes in defalut ... Fri, 05 Jul 2019 12:40:47 GMT sebastiaan.luyssaert [6101] DEV: parameters set over Europe and evaluated over the Americas. Mostly ... Fri, 05 Jul 2019 10:23:06 GMT sebastiaan.luyssaert [6100] DEV: added a parameter to tweak the temperature sensitivity of PFTs ... Thu, 04 Jul 2019 19:14:20 GMT anne-sofie.lanso [6099] Removed H_FIRST from the run.defs when using r6098 and onwards Thu, 04 Jul 2019 19:11:30 GMT anne-sofie.lanso [6098] DEV: H_FIRST is no longer needed in the code, and has thus been removed Thu, 04 Jul 2019 11:55:19 GMT matthew.mcgrath [6097] Using Nicolas's senesence path for grasslands, based on leaf age, as the ... Wed, 03 Jul 2019 16:14:13 GMT sebastiaan.luyssaert [6096] DEV: simplified the calculation of sugar_load. Should not affect the ... Wed, 03 Jul 2019 16:06:14 GMT sebastiaan.luyssaert [6095] DEV: tuned COEFF_MAINT_INIT for all changes to respiration leading to ... Wed, 03 Jul 2019 09:02:52 GMT sebastiaan.luyssaert [6093] DEV: updated the documentation Mon, 01 Jul 2019 12:57:57 GMT sebastiaan.luyssaert [6085] DEV: Mon, 01 Jul 2019 12:50:16 GMT sebastiaan.luyssaert [6084] DEV: fixed a bug in which a precision error triggered the ipslerr ... Mon, 01 Jul 2019 12:47:30 GMT josefine.ghattas [6083] Corrected error. Code could not compile with gfortran. Fri, 28 Jun 2019 13:02:24 GMT matthew.mcgrath [6082] DEV: Adding another error check for something unlikely to happen. Fri, 28 Jun 2019 07:47:27 GMT sebastiaan.luyssaert [6077] DEV: tested for a single pixel and got the model past the known ... Thu, 27 Jun 2019 21:48:29 GMT sebastiaan.luyssaert [6076] DEV: fix #577. nitrogen from manure was not correctly accounted for when ... Thu, 27 Jun 2019 10:05:36 GMT sebastiaan.luyssaert [6068] DEV: documented the calculation of throughfall and especially the ... Tue, 25 Jun 2019 14:49:37 GMT matthew.mcgrath [6059] DEV: Committing two patches used for grasslands with CN..protected by IF ...