= Modules =

In latest MICT you can find the following modules.

== Spitfire ==
Introduced in MICT v6

=== Input ===

Available flags for input data files

||= DEPENDENCIES =||= Keyword =||= Description =||
||                  ||LIGHTNING_FILE   || Read the ligntning map ||
||                  ||GRAZING_MAP      || Read the general animal_density map ||
||                  ||BA_FILE          || Read the population density map ||
||(READ_CF_COARSE)  || CF_COARSE_FILE  || Read the population density map ||
||(READ_CF_FINE)    ||CF_FINE_FILE     || Read the population density map ||
||(READ_RATIO)      ||RATIO_FILE       || Read the population density map ||
||(READ_RATIO_FLAG) ||RATIO_FLAG_FILE  || Read the population density map ||
||(READ_POPDENS)    ||POPDENS_FILE     || Read the population density map ||
||(READ_HUMIGN)     ||HUMIGN_FILE      || Read the population density map ||

=== Parameters ===

Available flags

||= DEPENDENCIES =||= Keyword =||= Description =||
||(NOT FIRE_DISABLE)    || ALLOW_DEFOREST_FIRE || Allow deforestation fire ||
||                      || READ_OBSERVED_BA || Read the observed burned_area flag ||
||                      || READ_CF_COARSE   || Read the observed burned_area flag ||
||                      || READ_CF_FINE     || Read the observed burned_area flag ||
||                      || READ_RATIO       || Read the observed burned_area flag ||
||                      || READ_RATIO_FLAG  || Read the observed burned_area flag ||
||                      || READ_POPDENS     || Read the popdens flag ||
||                      || READ_HUMIGN      || Read the human ignition parameter flag ||

== Grassland management ==
Introduced in MICT v5

=== Parameters ===

Available flags

||= Keyword =||= Description =||
||ENABLE_GRAZING          ||grazing allowed (animals or not)||
||IS_GRASSLAND_MANAG`__`XX  ||Is the vegetation type a managed grassland ?||
||IS_GRASSLAND_GRAZED`__`XX ||Is the vegetation type a managed grassland ?||
||IS_GRASSLAND_CUT`__`XX    ||Is the vegetation type a cut grassland for management adaptation?||
||IS_GRASSLAND_GRAZED     ||Is the vegetation type a grazed grassland for management adaptation?||
||SLA_MAX                 ||minimum gdd to allow senescence of crops. Maximum specific leaf area (m2/gC) ||
||SLA_MIN                  ||minimum specific leaf area (m2/gC) ||


== DGVM ==

Introduced in MICT v4bis **TO CHECK**

=== Parameters ===

||= Keyword =||= Description =||
|| STOMATE_OK_DGVM || Active module (y/n) ||

Module flags

||= Keyword =||= Description =||
||TOPMODEL_PARAMETERS_FILE||Name of file from which TOPMODEL parameters file are read||
||HYDROL_FWET||Initial fwet_out if not found in restart||
||OK_EXPLICITSNOW||Activate explict snow scheme||
||OK_HISTSYNC||Syncronize and write at each time step the IOIPSL output files||

== Multilayer hidrology ==

||= Keyword =||= Description =||
|| || ||

== LUC ==

||= Keyword =||= Description =||
|| || ||

== Soil freezing ==

||= Keyword =||= Description =||
|| OK_FREEZE_THERMIX || Enable/disable module (y/n) ||

== Permafrost carbon ==

||= Keyword =||= Description =||
|| OK_PC || Enable/disable module (y/n) ||


== Multilayer snow ==

||= Keyword =||= Description =||
|| OK_EXPLICITSNOW || Enable/disable module (y/n) ||
 

== Routing ==

||= Keyword =||= Description =||
|| RIVER_ROUTING || Enable/disable module (y/n) ||
|| RIVER_RIVERS || int  ||


Set RIVER_ROUTING to Yes to use the following modules

=== foodplains ===

||= Keyword =||= Description =||
|| DO_FLOODPLAINS || Enable/disable module (y/n) ||


=== swamps ===

||= Keyword =||= Description =||
|| DO_SWAMPS || Enable/disable module (y/n) ||

== Wetlands ==

||= Keyword =||= Description =||
|| CH4_CALCUL || Enable/disable module (y/n) ||
|| CH4atmo_CONC || ... ||
|| ... || ... ||

== Topmodel ==

||= Keyword =||= Description =||
|| TOPM_CALCUL || Enable/disable module (y/n) ||
|| TOPMODEL_PARAMETERS_FILE || /home/satellites1/speng/ORCHIDEE/INPUT/TOPMODEL_param_1deg.nc ||

== CO2 variation ==

Define with value 

||= Keyword =||= Description =||
|| ???? || /home/orchideeshare/igcmg/IGCM/BC/SRF/OL2/CO2_1860_2012_TRENDY2.txt  ||

== Analytic spinup ==

Not working. For the moment use forcesoil method in order to add carbon.
||= Keyword =||= Description =||
|| || ||

=== Forcesoil ===

||= Keyword =||= Description =||
|| FORCESOIL_STEP_PER_YEAR || Number of time steps per year for carbon spinup (default 12) ||
|| FORCESOIL_NB_YEAR || Number of years saved for carbon spinup. (default 1) ||

== Spredprec ==

Spread precipiation over a period time. Use default.
||= Keyword =||= Description =||
|| || ||

== Down regulation ==

Use default.
||= Keyword =||= Description =||
|| DOWNREGULATION_CO2 || Enable/disable module (y/n) ||