1 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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2 | % |
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3 | % Build a ROMS boundary file |
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4 | % |
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5 | % Extrapole and interpole temperature and salinity from a |
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6 | % climatology to get boundary conditions for |
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7 | % ROMS (boundary netcdf file) . |
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8 | % Get the velocities and sea surface elevation via a |
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9 | % geostrophic computation. |
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10 | % |
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11 | % Data input format (netcdf): |
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12 | % temperature(T, Z, Y, X) |
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13 | % T : time [Months] |
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14 | % Z : Depth [m] |
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15 | % Y : Latitude [degree north] |
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16 | % X : Longitude [degree east] |
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17 | % |
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18 | % Data source : IRI/LDEO climate Data Library (World Ocean Atlas 1998) |
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19 | % http://ingrid.ldgo.columbia.edu/ |
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20 | % http://iridl.ldeo.columbia.edu/SOURCES/.NOAA/.NODC/.WOA98/ |
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21 | % |
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22 | % Further Information: |
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23 | % http://www.brest.ird.fr/Roms_tools/ |
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24 | % |
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25 | % This file is part of ROMSTOOLS |
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26 | % |
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27 | % ROMSTOOLS is free software; you can redistribute it and/or modify |
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28 | % it under the terms of the GNU General Public License as published |
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29 | % by the Free Software Foundation; either version 2 of the License, |
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30 | % or (at your option) any later version. |
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31 | % |
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32 | % ROMSTOOLS is distributed in the hope that it will be useful, but |
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33 | % WITHOUT ANY WARRANTY; without even the implied warranty of |
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34 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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35 | % GNU General Public License for more details. |
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36 | % |
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37 | % You should have received a copy of the GNU General Public License |
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38 | % along with this program; if not, write to the Free Software |
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39 | % Foundation, Inc., 59 Temple Place, Suite 330, Boston, |
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40 | % MA 02111-1307 USA |
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41 | % |
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42 | % Copyright (c) 2005-2006 by Pierrick Penven |
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43 | % e-mail:Pierrick.Penven@ird.fr |
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44 | % |
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45 | % Updated 1-Sep-2006 by Pierrick Penven |
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46 | % Pierrick Penven, IRD, 2005. % |
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47 | % Olivier Aumont the master, IRD, 2006. % |
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48 | % Patricio Marchesiello, chief, IRD, 2007. % |
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49 | % Christophe Eugene Raoul Menkes, the slave, IRD, 2007. % |
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50 | |
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51 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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52 | |
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53 | % WARNING !!!!!! THIS ASSUMES THAT THE TIME FOR PISCES INITIAL. |
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54 | % IS THE SAME AS THE CLIM T AND S. ELSE, CHANGE THE PROGRAM |
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55 | % |
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56 | clear all |
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57 | close all |
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58 | %%%%%%%%%%%%%%%%%%%%% USERS DEFINED VARIABLES %%%%%%%%%%%%%%%%%%%%%%%% |
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59 | % |
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60 | % Common parameters |
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61 | % |
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62 | romstools_param |
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63 | Roa; |
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64 | % |
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65 | % Set times and cycles: monthly climatology for all data |
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66 | % |
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67 | time=woa_time; % time |
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68 | cycle=woa_cycle; % cycle |
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69 | % |
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70 | % Data climatologies file names: |
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71 | % |
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72 | % |
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73 | no3_seas_data = [woapisces_dir,'no3_seas.cdf']; |
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74 | no3_ann_data = [woapisces_dir,'no3_ann.cdf']; |
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75 | po4_seas_data = [woapisces_dir,'po4_seas.cdf']; |
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76 | po4_ann_data = [woapisces_dir,'po4_ann.cdf']; |
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77 | o2_seas_data = [woapisces_dir,'o2_seas.cdf']; |
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78 | o2_ann_data = [woapisces_dir,'o2_ann.cdf']; |
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79 | sio3_seas_data = [woapisces_dir,'sio3_seas.cdf']; |
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80 | sio3_ann_data = [woapisces_dir,'sio3_ann.cdf']; |
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81 | dic_seas_data = [woapisces_dir,'dic_seas.cdf']; |
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82 | dic_ann_data = [woapisces_dir,'dic_ann.cdf']; |
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83 | talk_seas_data = [woapisces_dir,'talk_seas.cdf']; |
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84 | talk_ann_data = [woapisces_dir,'talk_ann.cdf']; |
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85 | doc_seas_data = [woapisces_dir,'doc_seas.cdf']; |
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86 | doc_ann_data = [woapisces_dir,'doc_ann.cdf']; |
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87 | fer_seas_data = [woapisces_dir,'fer_seas.cdf']; |
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88 | fer_ann_data = [woapisces_dir,'fer_ann.cdf']; |
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89 | dust_seas_data = [woapisces_dir,'dust_seas.cdf']; |
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90 | dust_ann_data = [woapisces_dir,'dust_ann.cdf']; |
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91 | % |
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92 | % |
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93 | %%%%%%%%%%%%%%%%%%% END USERS DEFINED VARIABLES %%%%%%%%%%%%%%%%%%%%%%% |
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94 | % |
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95 | % Title |
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96 | % |
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97 | disp(' ') |
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98 | disp([' Making the file: ',bryname]) |
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99 | disp([' Adding the PISCES variables']) |
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100 | disp(' ') |
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101 | disp([' Title: ',ROMS_title]) |
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102 | % |
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103 | % Read in the grid |
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104 | % |
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105 | disp(' ') |
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106 | disp(' Read in the grid...') |
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107 | nc=netcdf(grdname); |
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108 | lon=nc{'lon_rho'}(:); |
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109 | lat=nc{'lat_rho'}(:); |
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110 | Lp=length(nc('xi_rho')); |
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111 | Mp=length(nc('eta_rho')); |
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112 | hmax=max(max(nc{'h'}(:))); |
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113 | result=close(nc); |
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114 | % |
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115 | % Redefine the boundary file |
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116 | % |
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117 | if (makebry) |
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118 | disp(' ') |
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119 | disp(' Redefine the boundary file...') |
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120 | add_bry_pisces(bryname,obc,time,cycle,'write'); |
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121 | end |
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122 | % |
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123 | % Redefine the boundary file in Z-coordinates |
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124 | % |
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125 | if (makeZbry) |
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126 | disp(' ') |
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127 | disp(' Redefine the boundary Z-file...') |
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128 | % |
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129 | % get Z |
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130 | % |
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131 | nc=netcdf(no3_ann_data); |
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132 | Z=nc{'Z'}(:); |
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133 | kmax=max(find(Z<hmax))-1; |
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134 | Z=Z(1:kmax); |
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135 | close(nc) |
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136 | add_bry_pisces_Z(Zbryname,obc,Z,time,cycle,'write'); |
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137 | disp(' ') |
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138 | disp(' Horizontal extrapolations') |
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139 | % |
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140 | % Loop on the lateral boundaries |
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141 | % |
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142 | for obcndx=1:4 |
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143 | if obc(obcndx)==1 |
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144 | if obcndx==1 |
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145 | disp(' Processing southern boundary...') |
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146 | suffix='_south'; |
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147 | elseif obcndx==2 |
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148 | disp(' Processing eastern boundary...') |
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149 | suffix='_east'; |
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150 | elseif obcndx==3 |
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151 | disp(' Processing northern boundary...') |
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152 | suffix='_north'; |
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153 | elseif obcndx==4 |
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154 | disp(' Processing western boundary...') |
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155 | suffix='_west'; |
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156 | end |
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157 | disp(' Nitrate...') |
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158 | bry_interp_pisces(Zbryname,lon,lat,no3_seas_data,no3_ann_data,... |
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159 | 'nitrate',['NO3',suffix],obcndx,Roa); |
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160 | disp(' Phosphate...') |
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161 | bry_interp_pisces(Zbryname,lon,lat,po4_seas_data,po4_ann_data,... |
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162 | 'phosphate',['PO4',suffix],obcndx,Roa); |
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163 | disp(' Silicate...') |
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164 | bry_interp_pisces(Zbryname,lon,lat,sio3_seas_data,sio3_ann_data,... |
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165 | 'silicate',['Si',suffix],obcndx,Roa); |
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166 | disp(' Oxygen...') |
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167 | bry_interp_pisces(Zbryname,lon,lat,o2_seas_data,o2_ann_data,... |
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168 | 'oxygen',['O2',suffix],obcndx,Roa); |
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169 | disp(' Dissolved Inorganic Carbon...') |
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170 | bry_interp_pisces(Zbryname,lon,lat,dic_seas_data,dic_ann_data,... |
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171 | 'dic',['DIC',suffix],obcndx,Roa); |
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172 | disp(' Total Alkalinity...') |
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173 | bry_interp_pisces(Zbryname,lon,lat,talk_seas_data,talk_ann_data,... |
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174 | 'talk',['TALK',suffix],obcndx,Roa); |
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175 | disp(' Dissolved Organic Carbon...') |
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176 | bry_interp_pisces(Zbryname,lon,lat,doc_seas_data,doc_ann_data,... |
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177 | 'doc',['DOC',suffix],obcndx,Roa); |
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178 | disp(' Iron...') |
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179 | bry_interp_pisces(Zbryname,lon,lat,fer_seas_data,fer_ann_data,... |
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180 | 'fer',['FER',suffix],obcndx,Roa); |
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181 | end |
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182 | end |
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183 | end |
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184 | % |
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185 | % Vertical interpolations |
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186 | % |
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187 | if (makebry) |
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188 | disp(' ') |
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189 | disp(' Vertical interpolations') |
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190 | % |
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191 | % Loop on the lateral boundaries |
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192 | % |
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193 | for obcndx=1:4 |
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194 | if obc(obcndx)==1 |
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195 | if obcndx==1 |
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196 | disp(' Processing southern boundary...') |
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197 | suffix='_south'; |
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198 | elseif obcndx==2 |
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199 | disp(' Processing eastern boundary...') |
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200 | suffix='_east'; |
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201 | elseif obcndx==3 |
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202 | disp(' Processing northern boundary...') |
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203 | suffix='_north'; |
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204 | elseif obcndx==4 |
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205 | disp(' Processing western boundary...') |
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206 | suffix='_west'; |
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207 | end |
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208 | disp(' ') |
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209 | disp(' Nitrate...') |
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210 | vinterp_bry(bryname,grdname,Zbryname,['NO3',suffix],obcndx); |
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211 | disp(' ') |
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212 | disp(' Phosphate...') |
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213 | vinterp_bry(bryname,grdname,Zbryname,['PO4',suffix],obcndx); |
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214 | disp(' ') |
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215 | disp(' Silica...') |
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216 | vinterp_bry(bryname,grdname,Zbryname,['Si',suffix],obcndx); |
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217 | disp(' ') |
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218 | disp(' Oxygen ...') |
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219 | vinterp_bry(bryname,grdname,Zbryname,['O2',suffix],obcndx); |
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220 | disp(' ') |
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221 | disp(' Dissolved Inorganic Carbon...') |
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222 | vinterp_bry(bryname,grdname,Zbryname,['DIC',suffix],obcndx); |
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223 | disp(' ') |
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224 | disp(' Total Alkalinity...') |
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225 | vinterp_bry(bryname,grdname,Zbryname,['TALK',suffix],obcndx); |
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226 | disp(' ') |
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227 | disp(' Dissolved Organic Carbon...') |
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228 | vinterp_bry(bryname,grdname,Zbryname,['DOC',suffix],obcndx); |
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229 | disp(' ') |
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230 | disp(' Iron...') |
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231 | vinterp_bry(bryname,grdname,Zbryname,['FER',suffix],obcndx); |
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232 | end |
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233 | end |
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234 | end |
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235 | % |
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236 | % Make a few plots |
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237 | % |
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238 | if makeplot==1 |
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239 | disp(' ') |
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240 | disp(' Make a few plots...') |
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241 | test_bry(bryname,grdname,'NO3',1,obc) |
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242 | figure |
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243 | test_bry(bryname,grdname,'PO4',1,obc) |
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244 | figure |
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245 | test_bry(bryname,grdname,'Si',1,obc) |
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246 | figure |
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247 | test_bry(bryname,grdname,'O2',1,obc) |
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248 | figure |
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249 | test_bry(bryname,grdname,'DIC',6,obc) |
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250 | figure |
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251 | test_bry(bryname,grdname,'TALK',6,obc) |
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252 | figure |
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253 | test_bry(bryname,grdname,'DOC',6,obc) |
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254 | figure |
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255 | test_bry(bryname,grdname,'FER',6,obc) |
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256 | end |
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257 | % |
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258 | % End |
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259 | % |
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260 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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