source: Roms_tools/Preprocessing_tools/vinterp_bry.m @ 2

function vinterp_bry(bryname,grdname,Zbryname,vname,obcndx)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%  Vertical interpolation from a Z-grid to a sigma-grid in the
%  case of boundary (bry) files.
% 
%  Further Information:  
%  http://www.brest.ird.fr/Roms_tools/
%  
%  This file is part of ROMSTOOLS
%
%  ROMSTOOLS is free software; you can redistribute it and/or modify
%  it under the terms of the GNU General Public License as published
%  by the Free Software Foundation; either version 2 of the License,
%  or (at your option) any later version.
%
%  ROMSTOOLS is distributed in the hope that it will be useful, but
%  WITHOUT ANY WARRANTY; without even the implied warranty of
%  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
%  GNU General Public License for more details.
%
%  You should have received a copy of the GNU General Public License
%  along with this program; if not, write to the Free Software
%  Foundation, Inc., 59 Temple Place, Suite 330, Boston,
%  MA  02111-1307  USA
%
%  Copyright (c) 2005-2006 by Pierrick Penven 
%  e-mail:Pierrick.Penven@ird.fr  
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% open the grid file  
% 
ng=netcdf(grdname);
L=length(ng('xi_rho'));
M=length(ng('eta_rho'));
if obcndx==1
  h=ng{'h'}(1,:);
elseif obcndx==2
  h=ng{'h'}(:,L);
elseif obcndx==3
  h=ng{'h'}(M,:);
elseif obcndx==4
  h=ng{'h'}(:,1);
end
close(ng);
%
% open the boundary file  
% 
nc=netcdf(bryname,'write');
theta_s = nc{'theta_s'}(:);
theta_b =  nc{'theta_b'}(:);
hc  =  nc{'hc'}(:);
N =  length(nc('s_rho'));
%
% open the oa file  
% 
noa=netcdf(Zbryname);
z=-noa{'Z'}(:);
t=noa{'bry_time'}(:);
tlen=length(t);
Nz0=length(z);
%
% Get the sigma depths
%
zroms=squeeze(zlevs(h,0.*h,theta_s,theta_b,hc,N,'r'));
zmin=min(min(zroms));
zmax=max(max(zroms));
%
% Check if the min z level is below the min sigma level 
%    (if not add a deep layer)
%
addsurf=max(z)<zmax;
addbot=min(z)>zmin;
if addsurf
 z=[100;z];
end
if addbot
 z=[z;-100000];
end
Nz=min(find(z<zmin));
z=z(1:Nz);
%
% loop on time
%
for l=1:tlen
%for l=1:1
%  disp([' Time index: ',num2str(l),' of total: ',num2str(tlen)])
  var=squeeze(noa{vname}(l,:));
%  disp(['SIZE VAR=',num2str(size(var))])
  if addsurf
    var=cat(1,var(1,:),var);
  end
  if addbot
    var=cat(1,var,var(end,:));
  end
  var=var(1:Nz,:);
  nc{vname}(l,:,:)=ztosigma_1d(flipdim(var,1),zroms,flipud(z));
end
close(nc);
close(noa);


%DEBUG
%
%size(var)
%var
%
%size(flipdim(var,1))
%flipdim(var,1)
%
%size(z)
%z
%
%size(flipud(z))
%flipud(z)
%
%size(zroms)
%zroms
%
%size(ztosigma_1d(flipdim(var,1),zroms,flipud(z)))
%
%
%%
return