Changeset 310 for branches

Timestamp:

04/04/13 14:10:19 (11 years ago)

Author:

pinsard

Message:

small fixes, more authors

Location:

branches/bibliolocean

Files:

• data/biblioref.bib (modified) (12 diffs)
• src/define_authors.sh (modified) (2 diffs)
• src/genbib.sh (modified) (3 diffs)

branches/bibliolocean/data/biblioref.bib

@@ -18 +18 @@
     affiliation = {Centre International de Recherche sur l'Environnement et le D{\'e}veloppement - CIRED , Department of Economics, Ecole Polytechnique , Laboratoire d'Oc{\'e}anographie et du Climat : Exp{\'e}rimentations et Approches Num{\'e}riques - LOCEAN},
     volume={2013-03},
+year={2013},
 publisher = {École polytechnique},
     pdf = {http://hal.archives-ouvertes.fr/hal-00796528/PDF/cahier\_de\_recherche\_2013-03.pdf},
@@ -42 +43 @@
 }
 
-@unpublished{DufresneFoujolsEtAl:CD:2013,
+@unpublished{DufresneFoujolsEtAl:CD:2013inpress,
 hal_id = {hal-00794170},
 loceanaffectation = {cnrs,ird},
 loceanbibid = {01939},
-loceanteam= {varclim,incas,nemo},
+loceanteam= {varclim,incas,nemo,phybiocar},
 timestamp = {20130226},
+  aerestype = {ACL},
+  comment = {20130404 : remplace loceanbibid 01542},
+  aeresteam = {varclim},
 title = {{Climate change projections using the IPSL-CM5 Earth System Model: from CMIP3 to CMIP5}},
 author = {Jean-Louis Dufresne and Marie-Alice Foujols and Sébastien Denvil and A. Caubel and Olivier Marti and Olivier Aumont and Y. Balkanski and Slimane Bekki and {H}ugo {B}ellenger and {R}achid {B}enshila and Sandrine Bony and Laurent Bopp and Pascale Braconnot and Patrick Brockmann and Patricia Cadule and F. Cheruy and Francis Codron and Anne Cozic and David Cugnet and Nathalie De Noblet and Jean-Philippe Duvel and {C}hristian {É}thé and Laurent Fairhead and T. Fichefet and {S}imona {F}lavoni and Pierre Friedlingstein and Jean-Yves Grandpeix and L. Guez and {É}ric {G}uilyardi and Didier Hauglustaine and Frédéric Hourdin and A. Idelkadi and J. Ghattas and Sylvie Joussaume and M. Kageyama and G. Krinner and {S}onia {L}abetoulle and A. Lahellec and M.-P. Lefebvre and Franck Lefèvre and {C}laire {L}évy and Z.X. Li and J. Lloyd and François Lott and {G}urvan {M}adec and Martial Mancip and Marion Marchand and {S}ébastien {M}asson and Yann Meurdesoif and {J}uliette {M}ignot and I. Musat and S. Parouty and J. Polcher and C. Rio and M. Schulz and D. Swingedouw and S. Szopa and {C}laude {T}alandier and {P}ascal {T}erray and N. Viovy and N. Vuichard},
@@ -105 +109 @@
 timestamp = {20130207},
 title = {{Air-sea interaction in the eastern Equatorial Atlantic at intraseasonal timescales in boreal spring and summer: a quasi-biweekly equatorial oscillation}},
-author = {Gaëlle de Coëtlogon and Marion Leduc-Leballeur and Rémi Meynadier  and Sophie Bastin and  Moussa Diakhaté and Laurence Eymard and Hervé Giordani and Serge Janicot and Alban Lazar},
+author = {Gaëlle de Coëtlogon and Marion Leduc-Leballeur and Rémi Meynadier  and Sophie Bastin and  Moussa Diakhaté and {L}aurence {E}ymard and Hervé Giordani and {S}erge {J}anicot and {A}lban {L}azar},
 abstract = {{A quasi-biweekly oscillation in the northern front of the eastern equatorial Atlantic's cold tongue is investigated by using observations and reanalyses in the 2000-2009 decade, with a focus on boreal spring and summer months (May to August). Fluctuations of the front latitude induce quasi-biweekly equatorial sea surface temperature (SST) anomalies that are strongly coupled with surface wind anomalies. Linear regressions performed onto a Northern Cold Tongue Index emphasize the two following mechanisms to explain the atmospheric adjustment to SST anomalies: first, a colder (warmer) ocean decreases (increases) the vertical mixing in the marine atmospheric boundary layer, which favors a weaker (stronger) surface wind; and second, a positive (negative) anomaly of SST meridional gradient induces a negative (positive) anomaly in sea level pressure meridional gradient, which accelerate (decelerate) the surface wind. The first mechanism has an immediate effect, while the second takes one or two days to adjust. Following a large-scale wind acceleration (deceleration), the second mechanism weakens (strengthens) southeasterlies in the low troposphere south of 1\degreN, through reversed SST and meridional pressure gradient anomalies, thereby forcing the opposite phase of the oscillation within about 6 to 8 days. Between the equator and the coast, both mechanisms possibly explain the observed intensification of the recirculation loop between the equator and the Guinean coast in the low troposphere, which sustains and accelerates surface wind around 3\degreN.}},
 language = {Fran{\c c}ais},
@@ -182 +186 @@
 timestamp = {20130204},
 hal_id = {hal-00784292},
-author={A. Lenton and B. Tilbrook and R. Law and D. Bakker and S. C. Doney and N. Gruber and M. Hoppema and M. Ishii and N. S. Lovenduski and R. J. Matear and B. I. McNeil and {N}icolas {M}etzl and S. E. {Mikaloff Fletcher} and P. Monteiro and C. Rödenbeck and C. Sweeney and T. Takahashi},
+author={Andrew Lenton and B. Tilbrook and R. Law and D. Bakker and S. C. Doney and N. Gruber and M. Hoppema and M. Ishii and N. S. Lovenduski and R. J. Matear and B. I. McNeil and {N}icolas {M}etzl and S. E. {Mikaloff Fletcher} and P. Monteiro and C. Rödenbeck and C. Sweeney and T. Takahashi},
 title={Sea-air {CO$_{2}$} fluxes in the Southern Ocean for the period 1990-2009},
 ads={2013BGD....10..285L},
@@ -345 +349 @@
 timestamp = {20130102},
 title = {{Authigenic carbonates from active methane seeps offshore southwest Africa}},
-author = {{C}atherine {P}ierre and Marie-Madeleine Blanc-Valleron and Jérôme Demange and Omar Boudouma and Jean-Paul Foucher and Thomas Pape and Tobias Himmler and Noemi Fekete and Volkhard Spiess},
+author = {{C}atherine {P}ierre and Marie-Madeleine Blanc-Valleron and {J}érôme {D}emange and Omar Boudouma and Jean-Paul Foucher and Thomas Pape and Tobias Himmler and Noemi Fekete and Volkhard Spiess},
 abstract = {{The southwest African continental margin is well known for occurrences of active methane-rich fluid seeps associated with seafloor pockmarks at water depths ranging broadly from the shelf to the deep basins, as well as with high gas flares in the water column, gas hydrate accumulations, diagenetic carbonate crusts and highly diverse benthic faunal communities. During the M76/3a expedition of R/V METEOR in 2008, gravity cores recovered abundant authigenic carbonate concretions from three known pockmark sites--Hydrate Hole, Worm Hole, the Regab pockmark--and two sites newly discovered during that cruise, the so-called Deep Hole and Baboon Cluster. The carbonate concretions were commonly associated with seep-benthic macrofauna and occurred within sediments bearing shallow gas hydrates. This study presents selected results from a comprehensive analysis of the mineralogy and isotope geochemistry of diagenetic carbonates sampled at these five pockmark sites. The oxygen isotope stratigraphy obtained from three cores of 2-5 m length indicates a maximum age of about 60,000-80,000 years for these sediments. The authigenic carbonates comprise mostly magnesian calcite and aragonite, associated occasionally with dolomite. Their very low carbon isotopic compositions (-61.0 < $\delta^{13}$C \textperthousand V-PDB < -40.1) suggest anaerobic oxidation of methane (AOM) as the main process controlling carbonate precipitation. The oxygen isotopic signatures (+2.4 < $\delta^{18}$O \textperthousand V-PDB < +6.2) lie within the range in equilibrium under present-day/interglacial to glacial conditions of bottom seawater; alternatively, the most positive $\delta^{18}$O values might reflect the contribution of 18O-rich water from gas hydrate decomposition. The frequent occurrence of diagenetic gypsum crystals suggests that reduced sulphur (hydrogen sulphide, pyrite) from sub-seafloor sediments has been oxidized by oxygenated bottom water. The acidity released during this process can potentially induce the dissolution of carbonate, thereby providing enough Ca2+ ions for pore solutions to reach gypsum saturation; this is thought to be promoted by the bio-irrigation and burrowing activity of benthic fauna. The $\delta^{18}$O-$\delta^{13}$C patterns identified in the authigenic carbonates are interpreted to reflect variations in the rate of AOM during the last glacial-interglacial cycle, in turn controlled by variably strong methane fluxes through the pockmarks. These results complement the conclusions of Kasten et al. in this special issue, based on authigenic barite trends at the Hydrate Hole and Worm Hole pockmarks which were interpreted to reflect spatiotemporal variations in AOM related to subsurface gas hydrate formation-decomposition.}},
 language = {Anglais},
@@ -469 +473 @@
 timestamp = {20121128},
 title = {{The influence of local environment on the aging and mortality of Aedes aegypti (L.): Case study in Fortaleza-CE, Brazil}},
-author = {{N}icolas {D}égallier and Jacques Servain and Paulo Sérgio Lucio and Alexis Hannart and Bruno Durand and Raimundo Nonato de Souza and Zolyde Mota Ribeiro},
+author = {{N}icolas {D}égallier and {J}acques {S}ervain and Paulo Sérgio Lucio and Alexis Hannart and Bruno Durand and Raimundo Nonato de Souza and Zolyde Mota Ribeiro},
 language = {Anglais},
 affiliation = {Laboratoire d'Oc{\'e}anographie et du Climat : Exp{\'e}rimentations et Approches Num{\'e}riques - LOCEAN},
@@ -565 +569 @@
 hal_id = {hal-00756509},
 title = {{A uniform, quality controlled Surface Ocean {CO$_{2}$} Atlas (SOCAT)}},
-author = {B. Pfeil and A. Olsen and D. C. E. Bakker and S. Hankin and H. Koyuk and A. Kozyr and J. Malczyk and A. Manke and {N}icolas {M}etzl and C. L. Sabine and J. Akl and S. R. Alin and R. G. J. Bellerby and A. Borges and {J}acqueline {B}outin and P. J. Brown and W.-J. Cai and F. P. Chavez and A. Chen and C. Cosca and A. J. Fassbender and R. A. Feely and M. González-Dávila and C. Goyet and N. Hardman-Mountford and C. Heinze and M. Hood and M. Hoppema and C. W. Hunt and D. Hydes and M. Ishii and T. Johannessen and S. D. Jones and R. M. Key and A. Körtzinger and P. Landschützer and S. K. Lauvset and {N}athalie {L}efèvre and A. Lenton and {A}nna {L}ourantou and {L}iliane {M}erlivat and T. Midorikawa and L. Mintrop and C. Miyazaki and A. Murata and A. Nakadate and Y. Nakano and S. Nakaoka and Y. Nojiri and A. M. Omar and X. A. Padin and G.-H. Park and K. Paterson and F. F. Perez and D. Pierrot and A. Poisson and A. F. Ríos and J. M. Santana-Casiano and J. Salisbury and V. V. S. S. Sarma and R. Schlitzer and B. Schneider and U. Schuster and R. Sieger and I. Skjelvan and T. Steinhoff and T. Suzuki and T. Takahashi and K. Tedesco and M. Telszewski and H. Thomas and B. Tilbrook and J. Tjiputra and D. Vandemark and T. Veness and R. Wanninkhof and A. J. Watson and R. Weiss and C. S. Wong and H. Yoshikawa-Inoue},
+author = {B. Pfeil and A. Olsen and D. C. E. Bakker and S. Hankin and H. Koyuk and A. Kozyr and J. Malczyk and A. Manke and {N}icolas {M}etzl and C. L. Sabine and J. Akl and S. R. Alin and R. G. J. Bellerby and A. Borges and {J}acqueline {B}outin and P. J. Brown and W.-J. Cai and F. P. Chavez and A. Chen and C. Cosca and A. J. Fassbender and R. A. Feely and M. González-Dávila and C. Goyet and N. Hardman-Mountford and C. Heinze and M. Hood and M. Hoppema and C. W. Hunt and D. Hydes and M. Ishii and T. Johannessen and S. D. Jones and R. M. Key and A. Körtzinger and P. Landschützer and S. K. Lauvset and {N}athalie {L}efèvre and Andrew Lenton and {A}nna {L}ourantou and {L}iliane {M}erlivat and T. Midorikawa and L. Mintrop and C. Miyazaki and A. Murata and A. Nakadate and Y. Nakano and S. Nakaoka and Y. Nojiri and A. M. Omar and X. A. Padin and G.-H. Park and K. Paterson and F. F. Perez and D. Pierrot and A. Poisson and A. F. Ríos and J. M. Santana-Casiano and J. Salisbury and V. V. S. S. Sarma and R. Schlitzer and B. Schneider and U. Schuster and R. Sieger and I. Skjelvan and T. Steinhoff and T. Suzuki and T. Takahashi and K. Tedesco and M. Telszewski and H. Thomas and B. Tilbrook and J. Tjiputra and D. Vandemark and T. Veness and R. Wanninkhof and A. J. Watson and R. Weiss and C. S. Wong and H. Yoshikawa-Inoue},
 language = {Anglais},
 affiliation = {Laboratoire d'Oc{\'e}anographie et du Climat : Exp{\'e}rimentations et Approches Num{\'e}riques - LOCEAN},
@@ -8130 +8134 @@
 }
 
-@UNPUBLISHED{DufresneFoujolsEtAl:CD:2011inrevision,
-  author = {{J}ean-{L}ouis {D}ufresne and {M}arie-{A}lice {F}oujols and {S}ébastien {D}envil and {A}. {C}aubel and {O}livier {M}arti and {O}livier {A}umont and {Y}. {B}alkanski and {S}. {B}ekki and {H}ugo {B}ellenger and {R}achid {B}enshila and {S}. {B}ony and {L}aurent {B}opp and {P}ascale {B}raconnot and {P}atrick {B}rockmann and {P}atricia {C}adule and {F}. {C}heruy and {F}rancis {C}odron and {A}nne {C}ozic and {D}avid {C}ugnet and {N}. {de {N}oblet} and {J}ean-{P}hilippe {D}uvel and {C}hristian {É}thé and {L}aurent {F}airhead and {T}. {F}ichefet and {S}imona {F}lavoni and {P}ierre {F}riedlingstein and {J}ean-{Y}ves {G}randpeix and {L}. {G}uez and {É}ric {G}uilyardi and {D}idier {H}auglustaine and {F}rédéric {H}ourdin and {A}. {I}delkadi and {J}. {G}hattas and {S}ylvie {J}oussaume and {M}. {K}ageyama and {G}. {K}rinner and {S}onia {L}abetoulle and {A}. {L}ahellec and {M}.{P}. {L}efebvre and {F}. {L}efevre and {C}laire {L}évy and {Z}. {X}. {L}i and {J}ames {L}loyd and {F}rançois {L}ott and {G}urvan {M}adec and {M}artial {M}ancip and {M}. {M}archand and {S}ébastien {M}asson and {Y}. {M}eurdesoif and {J}uliette {M}ignot and {I}. {M}usat and {S}. {P}arouty and {J}. {P}olcher and {C}. {R}io and {M}. {S}chulz and {D}idier {S}wingedouw and {S}. {S}zopa and {C}laude {T}alandier and {P}ascal {T}erray and {N}. {V}iovy},
-  title = {{C}limate change projections using the {IPSL-CM5} {E}arth {S}ystem {M}odel: {F}rom {CMIP3} to {CMIP5}},
-  note = {in revision},
-  year = {2011},
-  aerestype = {ACL},
-  format = {in revision},
-  journal = {{C}limate {D}ynamics},
-  loceanaffectation = {ird,uvsq,cnrs},
-  loceanbibid = {01542},
-  loceanteam = {varclim,nemo,incas,phybiocar,surf},
-  aeresteam = {varclim},
-  timestamp = {20120419},
-}
 
 @ARTICLE{DupouyBenielligaryEtAl:B:2011,
@@ -20541 +20531 @@
   loceanbibid = {00882},
   loceanteam = {mmsa,phybiocar},
+  loceanaffectation = {uvsq,cnrs},
   timestamp = {20120419},
   unique-id = {{ISI:000280591601055}},
@@ -22328 +22319 @@
   loceanbibid = {00799},
   loceanteam = {mmsa,phybiocar},
+  loceanaffectation = {uvsq,cnrs},
   aeresteam = {mmsa},
   timestamp = {20120419},
@@ -23798 +23790 @@
   loceanbibid = {00740},
   loceanteam = {mmsa,phybiocar},
+  loceanaffectation = {uvsq},
   timestamp = {20120419},
 }
@@ -32944 +32937 @@
   loceanbibid = {00332},
   loceanteam = {mmsa},
+  loceanaffectation = {uvsq,cnrs},
   aeresteam = {mmsa},
   timestamp = {20120419},

branches/bibliolocean/src/define_authors.sh

@@ -36 +36 @@
 # EVOLUTIONS
 # ==========
+#
+# - fplod 20130227T095029Z cratos (Linux)
+#
+#   * add Nicolas Duprey
 #
 # - fplod 20121005T080532Z cratos.locean-ipsl.upmc.fr (Linux)
@@ -451 +455 @@
 list_author_file[${iauthor}]="Izumo_takeshi"
 #
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{N}icolas {D}uprey"
+list_author_title[${iauthor}]="Nicolas Duprey"
+list_author_file[${iauthor}]="Duprey_nicolas"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{S}imona {F}lavoni"
+list_author_title[${iauthor}]="Simona Flavoni"
+list_author_file[${iauthor}]="Flavoni_simona"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{D}amien {C}ardinal"
+list_author_title[${iauthor}]="Damien Cardinal"
+list_author_file[${iauthor}]="Cardinal_damien"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{A}nastase {A}lexandre {C}harantonis"
+list_author_title[${iauthor}]="Anastase Alexandre Charantonis"
+list_author_file[${iauthor}]="Charantonis_anastasealexandre"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{I}sabelle {D}urand"
+list_author_title[${iauthor}]="Isabelle Durand"
+list_author_file[${iauthor}]="Durand_isabelle"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{J}érôme {D}emange"
+list_author_title[${iauthor}]="Jérôme Demange"
+list_author_file[${iauthor}]="Demange_jerome"
+#
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{J}ean-{C}laude {G}ascard"
+list_author_title[${iauthor}]="Jean-Claude Gascard"
+list_author_file[${iauthor}]="Gascard_jeanclaude"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{S}erge {J}anicot"
+list_author_title[${iauthor}]="Serge Janicot"
+list_author_file[${iauthor}]="Janicot_serge"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{F}ernanda {J}ardon"
+list_author_title[${iauthor}]="Fernanda Jardon"
+list_author_file[${iauthor}]="Jardon_fernanda"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{N}icolas {K}olodziejczyk"
+list_author_title[${iauthor}]="Nicolas Kolodziejczyk"
+list_author_file[${iauthor}]="Kolodziejczyk_nicolas"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{J}ulien {J}ouanno"
+list_author_title[${iauthor}]="Julien Jouanno"
+list_author_file[${iauthor}]="Jouanno_julien"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{M}aïté {L}acarra"
+list_author_title[${iauthor}]="Maïté Lacarra"
+list_author_file[${iauthor}]="Lacarra_maite"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{C}laire {{L}o {M}onaco}}"
+list_author_title[${iauthor}]="Claire Lo Monaco"
+list_author_file[${iauthor}]="Lomonaco_claire"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{C}hristine {P}rovost"
+list_author_title[${iauthor}]="Christine Provost"
+list_author_file[${iauthor}]="Provost_christine"
+#
+iauthor=$(( ${iauthor} + 1))
+list_author_bibtool[${iauthor}]="{J}osyane {R}onchail"
+list_author_title[${iauthor}]="Josyane Ronchail"
+list_author_file[${iauthor}]="Ronchail_josyane"
+#
 export list_author_file
 export list_author_title

branches/bibliolocean/src/genbib.sh

@@ -17 +17 @@
 # TODO
 # ====
+#
+# plainnat pourvoir les doi dans le pdf mais des effets de bord 
+# sur les champs url et un doi ne passe pas peut-être à cause de "-"
 #
 # pb avec l'apostrophe dans les noms d'auteurs avec bibtool
@@ -525 +528 @@
    #
    # remove temporary latex files
-ls ${dirwww}/${biblioref}.${style}*
+   #ls ${dirwww}/$(basename ${biblioref}.${style})*
    rm ${dirwww}/$(basename ${biblioref}.${style}.bbl) ${dirwww}/$(basename ${biblioref}.${style}.blg) ${dirwww}/$(basename ${biblioref}.${style}.log) ${dirwww}/$(basename ${biblioref}.${style}.aux) 2> /dev/null
    #
-   #++rm ${biblioref}.${style}.tex 2> /dev/null
+   rm ${biblioref}.${style}.tex 2> /dev/null
 done
 
@@ -805 +808 @@
 done
 echo "fin auteurs"
-read a
-
-#++ process html transformation of DocBook file ++
 
 #++rm ${biblioref} 2> /dev/null