Changeset 354
- Timestamp:
- 04/08/14 10:27:39 (10 years ago)
- Files:
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- 35 edited
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branches/bibliolocean/data/biblioref.bib (modified) (2 diffs)
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branches/bibliolocean/data/userlocean.xml (modified) (31 diffs)
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branches/bibliolocean/src/README.rst (modified) (8 diffs)
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branches/bibliolocean/src/add_loceanbibid.sh (modified) (4 diffs)
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branches/bibliolocean/src/biblio_biber_biblatex.tex (modified) (2 diffs)
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branches/bibliolocean/src/biblio_check.sh (modified) (9 diffs)
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branches/bibliolocean/src/biblio_split.sh (modified) (8 diffs)
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branches/bibliolocean/src/checkaeres.sh (modified) (9 diffs)
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branches/bibliolocean/src/define_authors.sh (modified) (22 diffs)
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branches/bibliolocean/src/define_phybiocar_theme.sh (modified) (4 diffs)
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branches/bibliolocean/src/define_teams.sh (modified) (4 diffs)
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branches/bibliolocean/src/define_teams_aeres2007_2012.sh (modified) (2 diffs)
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branches/bibliolocean/src/genaeres.sh (modified) (15 diffs)
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branches/bibliolocean/src/genbib.sh (modified) (19 diffs)
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branches/bibliolocean/src/genprehal.sh (modified) (8 diffs)
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branches/bibliolocean/src/gtbiblio.xml (modified) (24 diffs)
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branches/bibliolocean/src/html2oocalc.sh (modified) (2 diffs)
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branches/bibliolocean/src/jabref_header.sh (modified) (1 diff)
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branches/bibliolocean/src/twinloceanbibid.sh (modified) (8 diffs)
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branches/bibliolocean/src/userlocean.xml (modified) (31 diffs)
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trunk/bibopa.sh (modified) (1 diff)
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trunk/checkmain.sh (modified) (1 diff)
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trunk/data/biball.xml (modified) (2 diffs)
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trunk/data/bibdemo1.xml (modified) (2 diffs)
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trunk/data/maindemo1.xml (modified) (1 diff)
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trunk/doc/guides/html/style.css (modified) (1 diff)
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trunk/doc/manuals/html/many/bibopa.sh.html (modified) (1 diff)
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trunk/doc/manuals/html/one/index.html (modified) (1 diff)
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trunk/docs/docs_dev/source/conf.py (modified) (2 diffs)
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trunk/docs/docs_dev/source/guides/bibliography.rst (modified) (1 diff)
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trunk/docs/docs_dev/source/guides/contributing.rst (modified) (1 diff)
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trunk/docs/docs_dev/source/guides/index.rst (modified) (1 diff)
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trunk/docs/docs_users/source/guides/requirements.rst (modified) (1 diff)
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trunk/install.sh (modified) (2 diffs)
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trunk/style.css (modified) (1 diff)
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branches/bibliolocean/data/biblioref.bib
r350 r354 2675 2675 2676 2676 @UNPUBLISHED{GuimberteauEtAl::2012inprep, 2677 author = {Guimberteau, Matthieu .and others},2677 author = {Guimberteau, Matthieu and others}, 2678 2678 title = {{A}mazonian streamflow simulated by {ORCHIDEE} in a climatic change perspective}, 2679 2679 note = {in prep.}, … … 37513 37513 37514 37514 @ARTICLE{AloisiBouloubassiEtAl:EPSL:2002, 37515 author = {Aloisi, Giovanni and Bouloubassi, Ioanna and Heijs, Sander and Pancost, Richard and Pierre, Catherine and Damsté Jaap S. Sinninghe and Gottschal, Jan C. and and Forney, Larry J. and Rouchy, J.-M.},37515 author = {Aloisi, Giovanni and Bouloubassi, Ioanna and Heijs, Sander and Pancost, Richard and Pierre, Catherine and Damsté Jaap S. Sinninghe and Gottschal, Jan C. and and Forney, Larry J. and Rouchy, J.-M.}, 37516 37516 title = {{CH4-consuming microorganisms and the formation of carbonate crusts at cold-seeps}}, 37517 37517 journal = {{E}arth and {P}lanetary {S}cience {L}etters}, -
branches/bibliolocean/data/userlocean.xml
r255 r354 1 <?xml version="1.0" encoding=" iso-8859-1"?>1 <?xml version="1.0" encoding="utf-8"?> 2 2 <!-- 3 3 … … 66 66 <user> 67 67 <!-- 68 list_author_bibtool[${iauthor}]="{F}ran çoise {P}insard"69 list_author_title[${iauthor}]="Fran çoise Pinsard"68 list_author_bibtool[${iauthor}]="{F}rançoise {P}insard" 69 list_author_title[${iauthor}]="Françoise Pinsard" 70 70 list_author_file[${iauthor}]="Pinsard_francoise" 71 71 ++ python auteur="Francoise Pinsard" … … 74 74 <userid>Pinsard_francoise</userid> 75 75 <personname> 76 <surname>Fran çoise Pinsard</surname>77 <firstname>Fran çoise Pinsard</firstname>76 <surname>Françoise Pinsard</surname> 77 <firstname>Françoise Pinsard</firstname> 78 78 <othername role='mi'></othername> 79 79 </personname> … … 98 98 <user> 99 99 <!-- 100 list_author_bibtool[${iauthor}]="{M}arina {L} évy"101 list_author_title[${iauthor}]="Marina L évy"100 list_author_bibtool[${iauthor}]="{M}arina {L}évy" 101 list_author_title[${iauthor}]="Marina Lévy" 102 102 list_author_file[${iauthor}]="Levy_marina" 103 103 --> 104 104 <userid>Levy_marina</userid> 105 105 <personname> 106 <surname>L évy</surname>106 <surname>Lévy</surname> 107 107 <firstname>Marina</firstname> 108 108 <othername role='mi'></othername> … … 168 168 <user> 169 169 <!-- 170 list_author_bibtool[${iauthor}]="{C}hristophe {E}. {M}enk ès"171 list_author_title[${iauthor}]="Christophe Menk ès"170 list_author_bibtool[${iauthor}]="{C}hristophe {E}. {M}enkÚs" 171 list_author_title[${iauthor}]="Christophe MenkÚs" 172 172 list_author_file[${iauthor}]="Menkes_christophe" 173 173 --> 174 174 <userid>Menkes_christophe</userid> 175 175 <personname> 176 <surname>Menk ès</surname>176 <surname>MenkÚs</surname> 177 177 <firstname>Christophe</firstname> 178 178 <othername role='mi'></othername> … … 196 196 <user> 197 197 <!-- 198 list_author_bibtool[${iauthor}]="{C}hristian { É}thé"199 list_author_title[${iauthor}]="Christian Éthé"198 list_author_bibtool[${iauthor}]="{C}hristian {Ã}thé" 199 list_author_title[${iauthor}]="Christian Ãthé" 200 200 list_author_file[${iauthor}]="Ethe_christian" 201 201 --> 202 202 <userid>Ethe_christian</userid> 203 203 <personname> 204 <surname> Éthé</surname>204 <surname>Ãthé</surname> 205 205 <firstname>Christian</firstname> 206 206 <othername role='mi'></othername> … … 224 224 <user> 225 225 <!-- 226 list_author_bibtool[${iauthor}]="{S}t éphane {P}ous"227 list_author_title[${iauthor}]="St éphane Pous"226 list_author_bibtool[${iauthor}]="{S}téphane {P}ous" 227 list_author_title[${iauthor}]="Stéphane Pous" 228 228 list_author_file[${iauthor}]="Pous_stephane" 229 229 --> … … 231 231 <personname> 232 232 <surname>Pous</surname> 233 <firstname>St éphane</firstname>233 <firstname>Stéphane</firstname> 234 234 <othername role='mi'></othername> 235 235 </personname> … … 252 252 <user> 253 253 <!-- 254 list_author_bibtool[${iauthor}]="{F}ran çois {C}olas"255 list_author_title[${iauthor}]="Fran çois Colas"254 list_author_bibtool[${iauthor}]="{F}rançois {C}olas" 255 list_author_title[${iauthor}]="François Colas" 256 256 list_author_file[${iauthor}]="Colas_francois" 257 257 --> … … 259 259 <personname> 260 260 <surname>Colas</surname> 261 <firstname>Fran çois</firstname>262 <othername role='mi'></othername> 263 </personname> 264 <email></email> 265 </user> 266 <user> 267 <!-- 268 list_author_bibtool[${iauthor}]="{S} ébastien {M}asson"269 list_author_title[${iauthor}]="S ébastien Masson"261 <firstname>François</firstname> 262 <othername role='mi'></othername> 263 </personname> 264 <email></email> 265 </user> 266 <user> 267 <!-- 268 list_author_bibtool[${iauthor}]="{S}ébastien {M}asson" 269 list_author_title[${iauthor}]="Sébastien Masson" 270 270 list_author_file[${iauthor}]="Masson_sebastien" 271 271 --> … … 273 273 <personname> 274 274 <surname>Masson</surname> 275 <firstname>S ébastien</firstname>276 <othername role='mi'></othername> 277 </personname> 278 <email></email> 279 </user> 280 <user> 281 <!-- 282 list_author_bibtool[${iauthor}]="{C}laire {L} évy"283 list_author_title[${iauthor}]="Claire L évy"275 <firstname>Sébastien</firstname> 276 <othername role='mi'></othername> 277 </personname> 278 <email></email> 279 </user> 280 <user> 281 <!-- 282 list_author_bibtool[${iauthor}]="{C}laire {L}évy" 283 list_author_title[${iauthor}]="Claire Lévy" 284 284 list_author_file[${iauthor}]="Levy_claire" 285 285 --> 286 286 <userid>Levy_claire</userid> 287 287 <personname> 288 <surname>L évy</surname>288 <surname>Lévy</surname> 289 289 <firstname>Claire</firstname> 290 290 <othername role='mi'></othername> … … 336 336 <user> 337 337 <!-- 338 list_author_bibtool[${iauthor}]="{C} édric {C}otté"339 list_author_title[${iauthor}]="C édric Cotté"338 list_author_bibtool[${iauthor}]="{C}édric {C}otté" 339 list_author_title[${iauthor}]="Cédric Cotté" 340 340 list_author_file[${iauthor}]="Cotte_cedric" 341 341 --> 342 342 <userid>Cotte_cedric</userid> 343 343 <personname> 344 <surname>Cott é</surname>345 <firstname>C édric</firstname>346 <othername role='mi'></othername> 347 </personname> 348 <email></email> 349 </user> 350 <user> 351 <!-- 352 list_author_bibtool[${iauthor}]="{J}ean-{B}eno ît {C}harrassin"344 <surname>Cotté</surname> 345 <firstname>Cédric</firstname> 346 <othername role='mi'></othername> 347 </personname> 348 <email></email> 349 </user> 350 <user> 351 <!-- 352 list_author_bibtool[${iauthor}]="{J}ean-{B}enoît {C}harrassin" 353 353 list_author_title[${iauthor}]="Jean-Benoit Charrassin" 354 354 list_author_file[${iauthor}]="Charrassin_jeanbenoit" … … 420 420 <user> 421 421 <!-- 422 list_author_bibtool[${iauthor}]="{J} érôme {V}ialard"423 list_author_title[${iauthor}]="J érôme Vialard"422 list_author_bibtool[${iauthor}]="{J}érÃŽme {V}ialard" 423 list_author_title[${iauthor}]="JérÃŽme Vialard" 424 424 list_author_file[${iauthor}]="Vialard_jerome" 425 425 --> … … 427 427 <personname> 428 428 <surname>Vialard</surname> 429 <firstname>J érôme</firstname>430 <othername role='mi'></othername> 431 </personname> 432 <email></email> 433 </user> 434 <user> 435 <!-- 436 list_author_bibtool[${iauthor}]="{N}athalie {L}ef èvre"437 list_author_title[${iauthor}]="Nathalie Lef èvre"429 <firstname>JérÃŽme</firstname> 430 <othername role='mi'></othername> 431 </personname> 432 <email></email> 433 </user> 434 <user> 435 <!-- 436 list_author_bibtool[${iauthor}]="{N}athalie {L}efÚvre" 437 list_author_title[${iauthor}]="Nathalie LefÚvre" 438 438 list_author_file[${iauthor}]="Lefevre_nathalie" 439 439 --> 440 440 <userid>Lefevre_nathalie</userid> 441 441 <personname> 442 <surname>Lef èvre</surname>442 <surname>LefÚvre</surname> 443 443 <firstname>Nathalie</firstname> 444 444 <othername role='mi'></othername> … … 546 546 <user> 547 547 <!-- 548 list_author_bibtool[${iauthor}]="{H}erv é{{L}e {G}off}}"549 list_author_title[${iauthor}]="Herv éLe Goff"548 list_author_bibtool[${iauthor}]="{H}ervé {{L}e {G}off}}" 549 list_author_title[${iauthor}]="Hervé Le Goff" 550 550 list_author_file[${iauthor}]="Legoff_herve" 551 551 --> … … 553 553 <personname> 554 554 <surname>Le Goff</surname> 555 <firstname>Herv é</firstname>556 <othername role='mi'></othername> 557 </personname> 558 <email></email> 559 </user> 560 <user> 561 <!-- 562 list_author_bibtool[${iauthor}]="{C} éline {R}idame"563 list_author_title[${iauthor}]="C éline Ridame"555 <firstname>Hervé</firstname> 556 <othername role='mi'></othername> 557 </personname> 558 <email></email> 559 </user> 560 <user> 561 <!-- 562 list_author_bibtool[${iauthor}]="{C}éline {R}idame" 563 list_author_title[${iauthor}]="Céline Ridame" 564 564 list_author_file[${iauthor}]="Ridame_celine" 565 565 --> … … 567 567 <personname> 568 568 <surname>Ridame</surname> 569 <firstname>C éline</firstname>570 <othername role='mi'></othername> 571 </personname> 572 <email></email> 573 </user> 574 <user> 575 <!-- 576 list_author_bibtool[${iauthor}]="{G}uillaume {M}ass é"577 list_author_title[${iauthor}]="Guillaume Mass é"569 <firstname>Céline</firstname> 570 <othername role='mi'></othername> 571 </personname> 572 <email></email> 573 </user> 574 <user> 575 <!-- 576 list_author_bibtool[${iauthor}]="{G}uillaume {M}assé" 577 list_author_title[${iauthor}]="Guillaume Massé" 578 578 list_author_file[${iauthor}]="Masse_guillaume" 579 579 --> 580 580 <userid>Masse_guillaume</userid> 581 581 <personname> 582 <surname>Mass é</surname>582 <surname>Massé</surname> 583 583 <firstname>Guillaume</firstname> 584 584 <othername role='mi'></othername> … … 658 658 <user> 659 659 <!-- 660 list_author_bibtool[${iauthor}]="{J}ean-{L}uc {M} élice"661 list_author_title[${iauthor}]="Jean-Luc M élice"660 list_author_bibtool[${iauthor}]="{J}ean-{L}uc {M}élice" 661 list_author_title[${iauthor}]="Jean-Luc Mélice" 662 662 list_author_file[${iauthor}]="Melice_jeanluc" 663 663 --> 664 664 <userid>Melice_jeanluc</userid> 665 665 <personname> 666 <surname>M élice</surname>666 <surname>Mélice</surname> 667 667 <firstname>Jean-Luc</firstname> 668 668 <othername role='mi'></othername> … … 686 686 <user> 687 687 <!-- 688 list_author_bibtool[${iauthor}]="{M}arie-{N}o ëlle {H}oussais"689 list_author_title[${iauthor}]="Marie-No ëlle Houssais"688 list_author_bibtool[${iauthor}]="{M}arie-{N}oëlle {H}oussais" 689 list_author_title[${iauthor}]="Marie-Noëlle Houssais" 690 690 list_author_file[${iauthor}]="Houssais_marienoelle" 691 691 --> … … 693 693 <personname> 694 694 <surname>Houssais</surname> 695 <firstname>Marie-No ëlle</firstname>695 <firstname>Marie-Noëlle</firstname> 696 696 <othername role='mi'></othername> 697 697 </personname> … … 756 756 <user> 757 757 <!-- 758 list_author_bibtool[${iauthor}]="{M}ichel {C}r épon"759 list_author_title[${iauthor}]="Michel Cr épon"758 list_author_bibtool[${iauthor}]="{M}ichel {C}répon" 759 list_author_title[${iauthor}]="Michel Crépon" 760 760 list_author_file[${iauthor}]="Crepon_michel" 761 761 --> 762 762 <userid>Crepon_michel</userid> 763 763 <personname> 764 <surname>Cr épon</surname>764 <surname>Crépon</surname> 765 765 <firstname>Michel</firstname> 766 766 <othername role='mi'></othername> … … 798 798 <user> 799 799 <!-- 800 list_author_bibtool[${iauthor}]="{F}r édéric {V}ivier"801 list_author_title[${iauthor}]="Fr éderic Vivier"800 list_author_bibtool[${iauthor}]="{F}rédéric {V}ivier" 801 list_author_title[${iauthor}]="Frédéric Vivier" 802 802 list_author_file[${iauthor}]="Vivier_frederic" 803 803 --> … … 805 805 <personname> 806 806 <surname>Vivier</surname> 807 <firstname>Fr éderic</firstname>807 <firstname>Frédéric</firstname> 808 808 <othername role='mi'></othername> 809 809 </personname> … … 826 826 <user> 827 827 <!-- 828 list_author_bibtool[${iauthor}]="{A}ntonio {L}ouren ço"829 list_author_title[${iauthor}]="Antonio Louren ço"828 list_author_bibtool[${iauthor}]="{A}ntonio {L}ourenço" 829 list_author_title[${iauthor}]="Antonio Lourenço" 830 830 list_author_file[${iauthor}]="Lourenco_antonio" 831 831 --> 832 832 <userid>Lourenco_antonio</userid> 833 833 <personname> 834 <surname>Louren ço</surname>834 <surname>Lourenço</surname> 835 835 <firstname>Antonio</firstname> 836 836 <othername role='mi'></othername> … … 966 966 <user> 967 967 <!-- 968 list_author_bibtool[${iauthor}]="{A}nne-{M}arie {S} émah"969 list_author_title[$iauthor]="Anne-Marie S émah"968 list_author_bibtool[${iauthor}]="{A}nne-{M}arie {S}émah" 969 list_author_title[$iauthor]="Anne-Marie Sémah" 970 970 list_author_file[${iauthor}]="Semah_annemarie" 971 971 --> 972 972 <userid>Semah_annemarie</userid> 973 973 <personname> 974 <surname>S émah</surname>974 <surname>Sémah</surname> 975 975 <firstname>Anne-Marie</firstname> 976 976 <othername role='mi'></othername> … … 1036 1036 <user> 1037 1037 <!-- 1038 list_author_bibtool[${iauthor}]="{S}abine {F} évrier"1039 list_author_title[${iauthor}]="Sabine F évrier"1038 list_author_bibtool[${iauthor}]="{S}abine {F}évrier" 1039 list_author_title[${iauthor}]="Sabine Février" 1040 1040 list_author_file[${iauthor}]="Fevrier_sabine" 1041 1041 --> 1042 1042 <userid>Fevrier_sabine</userid> 1043 1043 <personname> 1044 <surname>F évrier</surname>1044 <surname>Février</surname> 1045 1045 <firstname>Sabine</firstname> 1046 1046 <othername role='mi'></othername> … … 1050 1050 <user> 1051 1051 <!-- 1052 list_author_bibtool[${iauthor}]="{J} érôme {S}irven"1053 list_author_title[${iauthor}]="J érôme Sirven"1052 list_author_bibtool[${iauthor}]="{J}érÃŽme {S}irven" 1053 list_author_title[${iauthor}]="JérÃŽme Sirven" 1054 1054 list_author_file[${iauthor}]="Sirven_jerome" 1055 1055 --> … … 1057 1057 <personname> 1058 1058 <surname>Sirven</surname> 1059 <firstname>J érôme</firstname>1059 <firstname>JérÃŽme</firstname> 1060 1060 <othername role='mi'></othername> 1061 1061 </personname> … … 1078 1078 <user> 1079 1079 <!-- 1080 list_author_bibtool[${iauthor}]="{ É}ric {G}uilyardi"1081 list_author_title[${iauthor}]=" Éric Guilyardi"1080 list_author_bibtool[${iauthor}]="{Ã}ric {G}uilyardi" 1081 list_author_title[${iauthor}]="Ãric Guilyardi" 1082 1082 list_author_file[${iauthor}]="Guilyardi_eric" 1083 1083 --> … … 1085 1085 <personname> 1086 1086 <surname>Guilyardi</surname> 1087 <firstname> Éric</firstname>1087 <firstname>Ãric</firstname> 1088 1088 <othername role='mi'></othername> 1089 1089 </personname> … … 1134 1134 <user> 1135 1135 <!-- 1136 list_author_bibtool[${iauthor}]="{J}ean-{F}ran çois {S}aliège"1137 list_author_title[${iauthor}]="Jean-Fran çois Saliège"1136 list_author_bibtool[${iauthor}]="{J}ean-{F}rançois {S}aliÚge" 1137 list_author_title[${iauthor}]="Jean-François SaliÚge" 1138 1138 list_author_file[${iauthor}]="Saliege_jeanfrancois" 1139 1139 --> 1140 1140 <userid>Saliege_jeanfrancois</userid> 1141 1141 <personname> 1142 <surname>Sali ège</surname>1143 <firstname>Jean-Fran çois</firstname>1142 <surname>SaliÚge</surname> 1143 <firstname>Jean-François</firstname> 1144 1144 <othername role='mi'></othername> 1145 1145 </personname> -
branches/bibliolocean/src/README.rst
r242 r354 3 3 .. TIPS 4 4 .. ==== 5 ..6 .. To process this file for HTML output::7 5 .. 8 .. rst2html --strip-comments README.rst > README.html 6 .. To process this file for HTML output: 7 .. 8 .. .. code-bock:: bash 9 .. 10 .. rst2html --strip-comments README.rst > README.html 9 11 .. 10 12 .. TODO … … 20 22 .. - fplod 20120629T131738Z cratos (Linux) 21 23 .. 22 .. * creation àl'arrache24 .. * creation à l'arrache 23 25 .. 24 26 … … 27 29 ====== 28 30 29 ... produire les fichiers rtf pour aeres àpartir d'un .bib31 ... produire les fichiers rtf pour aeres à partir d'un .bib 30 32 avec superbib branche bibliolocean 31 33 32 34 .. warning:: 33 35 34 travail sur cratos àcause de jabref et bibtool36 travail sur cratos à cause de jabref et bibtool 35 37 36 R écupération de superbib38 Récupération de superbib 37 39 ======================== 38 40 39 Remplacer pinsard par votre login dans la commande suivante:: 41 Remplacer pinsard par votre login dans la commande suivante: 42 43 .. code-block:: bash 40 44 41 45 svn checkout svn+ssh://pinsard@forge.ipsl.jussieu.fr/ipsl/forge/projets/superbib/svn/ ${HOME}/superbib_ws/ … … 45 49 ===================================== 46 50 47 :: 51 .. code-block:: bash 48 52 49 SUPERBIB=${HOME}/superbib_ws/50 export SUPERBIB53 SUPERBIB=${HOME}/superbib_ws/ 54 export SUPERBIB 51 55 52 . ${SUPERBIB}/project_profile.sh \53 -d ${SUPERBIB} \54 -i /usr/temp/${LOGNAME}/superbib_d/ \55 -o /usr/temp/${LOGNAME}/superbib_d/ \56 -t /usr/temp/${LOGNAME}/log/57 -jv 2.6 \58 -j /usr/home/incas/francoise/jabref-2.6_cratos/ \59 -b /usr/home/incas/francoise/bibtool-2.52_cratos/bin56 . ${SUPERBIB}/project_profile.sh \ 57 -d ${SUPERBIB} \ 58 -i /usr/temp/${LOGNAME}/superbib_d/ \ 59 -o /usr/temp/${LOGNAME}/superbib_d/ \ 60 -t /usr/temp/${LOGNAME}/log/ 61 -jv 2.6 \ 62 -j /usr/home/incas/francoise/jabref-2.6_cratos/ \ 63 -b /usr/home/incas/francoise/bibtool-2.52_cratos/bin 60 64 61 Cette s équence de commande peut être incluse dans le ${HOME}/.profile65 Cette séquence de commande peut être incluse dans le ${HOME}/.profile 62 66 quand les tests suivants passent. 63 67 … … 65 69 +++++++++++++++++++++++++++++ 66 70 67 :: 71 .. code-block:: bash 68 72 69 java -jar ${JABREF_DIR}/JabRef-${JABREF_VERSION}.jar \70 71 73 java -jar ${JABREF_DIR}/JabRef-${JABREF_VERSION}.jar \ 74 -p ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \ 75 ${PROJECT}/data/bibloceantest1.bib 72 76 73 Vous devez voir apparaitre une fenêtre jabref et dans cette fenêtre une réf biblio:: 74 75 Techreport (MadecLevyEtAl:ES:2007) Madec, G.; Lévy, M.; Takahashi, K.; Pinsard, F.; Talandier, C.; Benshila, R. & Foujols, M.-A. Activities between CNRS and ESC under MOU The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, 2007 77 Vous devez voir apparaitre une fenêtre jabref et dans cette fenêtre une réf biblio: 76 78 77 79 78 Sur la fenêtre de lancement de la commande java ..., on voit des messages genre::80 .. parsed-literal:: 79 81 80 Jun 29, 2012 3:03:45 PM net.sf.jabref.plugin.PluginCore initialize 81 INFO: Found 2 plugin(s): 82 Techreport (MadecLevyEtAl:ES:2007) Madec, G.; Lévy, M.; Takahashi, K.; Pinsard, F.; Talandier, C.; Benshila, R. & Foujols, M.-A. Activities between CNRS and ESC under MOU The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, 2007 83 84 85 Sur la fenêtre de lancement de la commande java ..., on voit des messages genre: 86 87 .. parsed-literal:: 88 89 Jun 29, 2012 3:03:45 PM net.sf.jabref.plugin.PluginCore initialize 90 INFO: Found 2 plugin(s): 82 91 - net.sf.jabref.core (jar:file:/.autofs/home/incas/francoise/jabref-2.6_cratos/JabRef-2.6.jar!/plugins/net.sf.jabref.core/plugin.xml) 83 92 - net.sf.jabref.export.misq (jar:file:/.autofs/home/incas/francoise/jabref-2.6_cratos/JabRef-2.6.jar!/plugins/net.sf.jabref.export.misq/plugin.xml) … … 91 100 INFO: Exception while setting column widths. Choosing default. 92 101 93 Je ne sais pas m'en débarraser mais ça n'a pas l'air grave ... 94 95 102 Je ne sais pas m'en débarrasser mais ça n'a pas l'air grave ... 96 103 97 104 Tester si path ok pour bibtool 98 105 ++++++++++++++++++++++++++++++ 99 106 100 Recherche des publications dont l'ann ée (champ year bibtex est 2007) ::107 Recherche des publications dont l'année (champ year bibtex est 2007) : 101 108 102 bibtool -- 'select={year "2007"}' ${PROJECT}/data/bibloceantest1.bib 109 .. code-block:: bash 103 110 104 On doit voir :: 111 bibtool -- 'select={year "2007"}' ${PROJECT}/data/bibloceantest1.bib 105 112 106 @PREAMBLE{ "Bibliographie du LOCEAN - test1 superbib/bibliolocean" } 113 On doit voir : 107 114 108 @TechReport{ madeclevyetal:es:2007, 109 author = {{G}urvan {M}adec and {M}arina {L}évy and {K}eiko 110 {T}akahashi and {F}rançoise {P}insard and {C}laude 115 .. parsed-literal:: 116 117 @PREAMBLE{ "Bibliographie du LOCEAN - test1 superbib/bibliolocean" } 118 119 @TechReport{ madeclevyetal:es:2007, 120 author = {{G}urvan {M}adec and {M}arina {L}évy and {K}eiko 121 {T}akahashi and {F}rançoise {P}insard and {C}laude 111 122 {T}alandier and {R}achid {B}enshila and {M}arie-{A}lice 112 123 {F}oujols}, … … 121 132 } 122 133 123 Recherche des publications dont l'auteur est ginette (il n'y en a pas): :134 Recherche des publications dont l'auteur est ginette (il n'y en a pas): 124 135 125 bibtool -- 'select={author "ginette" ' ${PROJECT}/data/bibloceantest1.bib 136 .. code-block:: bash 137 138 bibtool -- 'select={author "ginette" ' ${PROJECT}/data/bibloceantest1.bib 126 139 127 140 On ne doit rien voir. 128 141 129 Copier la liste des r éférences du working space dans l'espace de données142 Copier la liste des références du working space dans l'espace de données 130 143 ======================================================================== 131 144 132 toutes les r éférences biblio du labo sont dans ${PROJECT}/../branches/bibliolocean/data/biblioref.bib.133 Les outils utilisent ${PROJECT_ID}/biblioref.bib pour éviter tous risques de scratch (même si on a le dépôt en secours).145 toutes les références biblio du labo sont dans ${PROJECT}/../branches/bibliolocean/data/biblioref.bib. 146 Les outils utilisent ${PROJECT_ID}/biblioref.bib pour éviter tous risques de scratch (même si on a le dépÃŽt en secours). 134 147 135 Il faut donc commencer par copier le fichier du working space dans l'espace "donn ées"::148 Il faut donc commencer par copier le fichier du working space dans l'espace "données": 136 149 137 cp ${PROJECT}/../branches/bibliolocean/data/biblioref.bib ${PROJECT_ID}/ 150 .. code-block:: bash 138 151 152 cp ${PROJECT}/../branches/bibliolocean/data/biblioref.bib ${PROJECT_ID}/ 139 153 140 G énérer les fichiers GTBIBLIO pour le www et les rtf154 Générer les fichiers GTBIBLIO pour le www et les rtf 141 155 ==================================================== 142 156 143 nb : Les fichiers rtf peuvent être utilisé sous openofffice (commande ooffice3.2 sous cratos).157 nb : Les fichiers rtf peuvent être utilisé sous openoffice (commande ooffice3.2 sous cratos). 144 158 145 :: 159 .. code-block:: bash 146 160 147 genbib.sh161 genbib.sh 148 162 149 163 Les fichiers sont dans ${PROJECT_OD}/public_html/gtbiblio/. 150 164 151 Vérifier la référence:: 165 Vérifier la référence: 166 167 .. code-block:: bash 152 168 153 169 checkaeres.sh … … 156 172 157 173 Si erreur, corriger ${PROJECT_ID}/biblioref.bib 158 avant de passer àla suite174 avant de passer à la suite 159 175 160 genaeres.sh 176 .. code-block:: bash 177 178 genaeres.sh 161 179 162 180 Les fichiers sont dans ${PROJECT_OD}/public_html/gtbiblio/aeres2007_2012/. -
branches/bibliolocean/src/add_loceanbibid.sh
r351 r354 9 9 # ======== 10 10 # 11 # ``add_loceanbibid.sh -i ifile -o ofile`` 11 # .. code-block:: bash 12 # 13 # add_loceanbibid.sh -i ifile -o ofile`` 12 14 # 13 15 # DESCRIPTION … … 16 18 # add a field loceanbibid to each reference 17 19 # 18 # -i input file (ifile) 19 # -o output file 20 # 21 # We assume here that the input file is written with this pattern of block:: 22 # 23 # @reftyp{Id 24 # ... 25 # } 20 # .. option:: -i <input file (ifile)> 21 # .. option:: -o <output file> 22 # 23 # We assume here that the input file is written with this pattern of block: 24 # 25 # .. parsed-literal:: 26 # 27 # @reftyp{Id 28 # ... 29 # } 26 30 # 27 31 # EXAMPLES 28 32 # ======== 29 33 # 30 # To add loceanid in each ref of the biblio of LOCEAN:: 31 # 32 # $ add_loceanbibid.sh -i biblioref.bib -o biblioref_withid.bib 33 # 34 # Check can be made :: 35 # 36 # sed -e "/loceanbibid={.*}/d" biblioref_withid.bib > ginette 37 # diff biblioref.bib ginette 34 # To add loceanid in each ref of the biblio of LOCEAN: 35 # 36 # .. code-block:: bash 37 # 38 # add_loceanbibid.sh -i biblioref.bib -o biblioref_withid.bib 39 # 40 # Check can be made : 41 # 42 # .. code-block:: bash 43 # 44 # sed -e "/loceanbibid={.*}/d" biblioref_withid.bib > ginette 45 # diff biblioref.bib ginette 38 46 # 39 47 # Output contains lines which are before the first block, after the last … … 89 97 if [ ${#} -lt ${minargcount} ] 90 98 then 91 echo "eee : not enough targuments"99 echo "eee : not enough arguments" 92 100 echo "${usage}" 93 101 exit 1 … … 119 127 shift 120 128 done 121 #122 129 # 123 130 # check for ${PROJECT_LOG} -
branches/bibliolocean/src/biblio_biber_biblatex.tex
r309 r354 2 2 % ======== 3 3 % 4 % :ref:`genbib.sh` which replace ginette by the actual .bib file and proce es pdflatex+biber4 % :ref:`genbib.sh` which replace ginette by the actual .bib file and process pdflatex+biber 5 5 % 6 6 % TODO … … 19 19 % - fplod 20130325T141004Z cratos.locean-ipsl.upmc.fr (Linux) 20 20 % 21 % * creation d'apr ès21 % * creation d'aprÚs 22 22 % http://gte.univ-littoral.fr/members/dbitouze/pub/latex/diapositives-cours-d/conference-n-6/downloadFile/file/en-ligne6.pdf 23 % pour uti ser biber et biblatex plutôt que bibtex23 % pour utiliser biber et biblatex plutÃŽt que bibtex 24 24 % 25 25 %- -
branches/bibliolocean/src/biblio_check.sh
r351 r354 13 13 # ======== 14 14 # 15 # ``biblio_check.sh -i biblio_dir -o dirout`` 15 # .. code-block:: bash 16 # 17 # biblio_check.sh -i biblio_dir -o dirout 16 18 # 17 19 # DESCRIPTION 18 20 # =========== 19 21 # 20 # Launch jabref on each individual file (bibtex convention syntax) of 22 # Launch jabref on each individual file (bibtex convention syntax) of 21 23 # biblio_dir 22 24 # 23 # -i input directory24 # -o output directory25 # .. option:: -i <input directory> 26 # .. option:: -o <output directory> 25 27 # 26 28 # Each file of the output directory is named after the bibtex file. … … 31 33 # ======== 32 34 # 33 # To check the biblio of LOCEAN: :35 # To check the biblio of LOCEAN: 34 36 # 35 # $ biblio_check.sh -i /tmp/locean_biblio_split/ -o /tmp/locean_biblio_check/ 37 # .. code-block:: bash 38 # 39 # biblio_check.sh -i /tmp/locean_biblio_split/ -o /tmp/locean_biblio_check/ 36 40 # 37 41 # TODO 38 42 # ==== 39 #40 43 # 41 44 # EVOLUTIONS … … 46 49 # - fplod 20110301T100911Z aedon.locean-ipsl.upmc.fr (Darwin) 47 50 # 48 # * jab eref_dir=f(uname -s)51 # * jabref_dir=f(uname -s) 49 52 # 50 53 # - fplod 20091019T085114Z aedon.locean-ipsl.upmc.fr (Darwin) … … 53 56 # 54 57 #- 58 set -u 55 59 # 56 60 system=$(uname) … … 80 84 ;; 81 85 *) 82 echo "${command} : eee : unknown system $(uname -s)"86 echo "${command} : eee : unknown system $(uname -s)" 83 87 ;; 84 88 esac … … 91 95 if [ ${#} -lt ${minargcount} ] 92 96 then 93 echo "eee : ${command} : not enough targuments"97 echo "eee : ${command} : not enough arguments" 94 98 echo "${usage}" 95 99 exit 1 96 100 fi 97 101 # 98 set +u 99 while [ ! -z "${1}" ] 102 while [ ${#} -gt 0 ] 100 103 do 101 104 case ${1} in … … 113 116 ;; 114 117 *) 115 # anything else116 echo "eee : unknown option ${1}"117 echo "eee : ${usage}"118 exit 1118 # anything else 119 echo "eee : unknown option ${1}" 120 echo "eee : ${usage}" 121 exit 1 119 122 ;; 120 123 esac … … 122 125 shift 123 126 done 124 #125 set -u126 127 # 127 128 # check for biblio_dir … … 147 148 fi 148 149 # 149 # loop on each file of ${biblio_dir} ie files to be check ted150 # loop on each file of ${biblio_dir} ie files to be checked 150 151 format=locean_listrefs 151 152 for bibtex_file in ${biblio_dir}/*.bib -
branches/bibliolocean/src/biblio_split.sh
r351 r354 13 13 # ======== 14 14 # 15 # ``biblio_split.sh -i biblio -o dirout [-n]`` 15 # .. code-block:: bash 16 # 17 # biblio_split.sh -i biblio -o dirout [-n]`` 16 18 # 17 19 # DESCRIPTION … … 21 23 # into files in a given output directory. 22 24 # 23 # -i input file (biblio)24 # -o output directory25 # -n numbered output files25 # .. option:: -i <input file (biblio)> 26 # .. option:: -o <output directory> 27 # .. option:: -n <numbered output files> 26 28 # 27 29 # Each file of the output directory is named after the Id it contains. 28 30 # 29 # We assume here that the input file is written with this pattern of block:: 30 # 31 # @reftyp{Id 32 # ... 33 # } 31 # We assume here that the input file is written with this pattern of block: 32 # 33 # .. parsed-literal:: 34 # 35 # @reftyp{Id 36 # ... 37 # } 34 38 # 35 39 # If ``-n`` option is used, files in the directory output are named after 36 40 # the number of the block it contains and the name of this block. This might 37 # be useful lto recombine blocks in the same order.41 # be useful to recombine blocks in the same order. 38 42 # 39 43 # EXAMPLES 40 44 # ======== 41 45 # 42 # To split the biblio of LOCEAN:: 43 # 44 # $ biblio_split.sh -i biblioref.bib -o /tmp/locean_biblio_split/ 45 # 46 # To split the biblio under data directory with numbered files:: 47 # 48 # $ biblio_split.sh -i biblioref.bib -o /tmp/locean_biblio_split/ -n 46 # To split the biblio of LOCEAN: 47 # 48 # .. code-block:: bash 49 # 50 # biblio_split.sh -i biblioref.bib -o /tmp/locean_biblio_split/ 51 # 52 # To split the biblio under data directory with numbered files: 53 # 54 # .. code-block:: bash 55 # 56 # biblio_split.sh -i biblioref.bib -o /tmp/locean_biblio_split/ -n 49 57 # 50 58 # Check can be made by concatenation of files in output directory if ``-n`` 51 # option have been used and comparison with original file:: 52 # 53 # $ cat /tmp/locean_biblio_split/b????_* > /tmp/locean_biblio_rebuild 54 # $ sdiff -w80 biblioref.bib /tmp/locean_biblio_rebuild 59 # option have been used and comparison with original file: 60 # 61 # .. code-block:: bash 62 # 63 # cat /tmp/locean_biblio_split/b????_* > /tmp/locean_biblio_rebuild 64 # sdiff -w80 biblioref.bib /tmp/locean_biblio_rebuild 55 65 # 56 66 # Output contains lines which are before the first block, after the last … … 59 69 # PREAMBLE and comment blocks are also ignored. 60 70 # 61 # 62 # Once splitted each entry can be an input of biblio processing. 63 # 64 # For example, here is how to produce an RTF file from each splitted reference:: 65 # 66 # $ for file in /tmp/locean_biblio_split/b????_*.bib 67 # do 68 # rtf=$(basename ${file} .bib).rtf 69 # java -jar /usr/home/incas/francoise/jabref-2.6_aedon.locean-ipsl.upmc.fr/JabRef.app/Contents/Resources/Java//JabRef-2.6.jar -n true -p ./jabref.preferences.xml --output /tmp/fplod/gtbiblio/${rtf},harvard ${file} 70 # 71 # done 72 # 73 # Open all these RTF files can be done on Mac with:: 74 # 75 # $ open /tmp/fplod/gtbiblio/b????_*.rtf 76 # 77 # Don't forget to remove thes files after examination 78 # $ rm /tmp/fplod/gtbiblio/b????_*.rtf 79 # 80 # You can also run pdflatex+biber from each splitted reference:: 81 # 82 # $ for filebib in /tmp/locean_biblio_split/b????_*.bib 83 # do 84 # filetex=/tmp/locean_biblio_split/$(basename ${filebib} .bib).tex 85 # echo $filetex 86 # read a 87 # sed -e "s@ginette@${filebib}@" biblio_biber_biblatex.tex > ${filetex} 88 # pdflatex -output-directory /tmp/locean_biblio_split/ ${filetex} 89 # biber /tmp/locean_biblio_split/$(basename ${filetex} .tex).bcf 90 # pdflatex -output-directory /tmp/locean_biblio_split/ ${filetex} 91 # pdflatex -output-directory /tmp/locean_biblio_split/ ${filetex} 92 # done 93 # 71 # Once split each entry can be an input of biblio processing. 72 # 73 # For example, here is how to produce an RTF file from each split reference: 74 # 75 # .. code-block:: bash 76 # 77 # for file in /tmp/locean_biblio_split/b????_*.bib 78 # do 79 # rtf=$(basename ${file} .bib).rtf 80 # java -jar /usr/home/incas/francoise/jabref-2.6_aedon.locean-ipsl.upmc.fr/JabRef.app/Contents/Resources/Java//JabRef-2.6.jar -n true -p ./jabref.preferences.xml --output /tmp/fplod/gtbiblio/${rtf},harvard ${file} 81 # 82 # done 83 # 84 # Open all these RTF files can be done on Mac with: 85 # 86 # .. code-block:: bash 87 # 88 # open /tmp/fplod/gtbiblio/b????_*.rtf 89 # 90 # Don't forget to remove thes files after examination: 91 # 92 # .. code-block:: bash 93 # 94 # rm /tmp/fplod/gtbiblio/b????_*.rtf 95 # 96 # You can also run pdflatex+biber from each split reference: 97 # 98 # .. code-block:: bash 99 # 100 # for filebib in /tmp/locean_biblio_split/b????_*.bib 101 # do 102 # filetex=/tmp/locean_biblio_split/$(basename ${filebib} .bib).tex 103 # echo ${filetex} 104 # read a 105 # sed -e "s@ginette@${filebib}@" biblio_biber_biblatex.tex > ${filetex} 106 # pdflatex -output-directory /tmp/locean_biblio_split/ ${filetex} 107 # biber /tmp/locean_biblio_split/$(basename ${filetex} .tex).bcf 108 # pdflatex -output-directory /tmp/locean_biblio_split/ ${filetex} 109 # pdflatex -output-directory /tmp/locean_biblio_split/ ${filetex} 110 # done 111 # 94 112 # TODO 95 113 # ==== 96 114 # 97 # Id retri val98 # 99 # sup ress comment and PREAMBLE115 # Id retrieval 116 # 117 # suppress comment and PREAMBLE 100 118 # 101 119 # EVOLUTIONS … … 114 132 # - fplod 20091019T122141Z aedon.locean-ipsl.upmc.fr (Darwin) 115 133 # 116 # * je tombe sur une différence bash/sh ! 117 # 118 # :: 119 # 120 # bash$ a=$(sed -ne "7,7p" biblioref.bib) 121 # bash$ echo $a 122 # author = {Laurence Eymard and Fatima Karbou and Serge Janicot and Nadine Chouaib and Fran{\c{c}}oise Pinsard}, 123 # 124 # sh-3.2$ a=$(sed -ne "7,7p" biblioref.bib) 125 # sh-3.2$ echo $a 126 # author = {Laurence Eymard and Fatima Karbou and Serge Janicot and Nadine Chouaib and Fran{sh-3.2$ 127 # 128 # 129 # contournement en redirigeant la sortie du sed dans un fichier 134 # * je tombe sur une différence bash/sh ! 135 # 136 # .. code-block:: bash 137 # 138 # bash$ a=$(sed -ne "7,7p" biblioref.bib) 139 # bash$ echo ${a} 140 # author = {Laurence Eymard and Fatima Karbou and Serge Janicot and Nadine Chouaib and Fran{\c{c}}oise Pinsard}, 141 # 142 # sh-3.2$ a=$(sed -ne "7,7p" biblioref.bib) 143 # sh-3.2$ echo ${a} 144 # author = {Laurence Eymard and Fatima Karbou and Serge Janicot and Nadine Chouaib and Fran{sh-3.2$ 145 # 146 # contournement en redirigeant la sortie du sed dans un fichier 130 147 # 131 148 # - fplod 20091019T090621Z aedon.locean-ipsl.upmc.fr (Darwin) … … 162 179 if [ ${#} -lt ${minargcount} ] 163 180 then 164 echo "eee : not enough targuments"181 echo "eee : not enough arguments" 165 182 echo "${usage}" 166 183 exit 1 167 184 fi 168 185 # 169 set +u 170 while [ ! -z "${1}" ] 186 while [ ${#} -gt 0 ] 171 187 do 172 188 case ${1} in 173 189 -i) 174 175 190 filein=${2} 191 shift 176 192 ;; 177 193 -o) … … 192 208 exit 1 193 209 ;; 194 195 196 210 esac 211 # next flag 212 shift 197 213 done 198 #199 set -u200 214 # 201 215 # check for filein … … 225 239 mkdir -p /tmp/${LOGNAME}/gtbiblio/ 226 240 # 227 # loop on each line of ${filein} ie the biblio to be split ted241 # loop on each line of ${filein} ie the biblio to be split 228 242 fileout=/dev/null 229 243 begin=0 … … 293 307 done 294 308 # 295 echo "iii : ${filein} is split tedin ${dirout}"309 echo "iii : ${filein} is split in ${dirout}" 296 310 # 297 311 # clean -
branches/bibliolocean/src/checkaeres.sh
r351 r354 9 9 # ======== 10 10 # 11 # ::12 # 13 # checkaeres.sh11 # .. code-block:: bash 12 # 13 # checkaeres.sh 14 14 # 15 15 # DESCRIPTION … … 21 21 # ======== 22 22 # 23 # ::24 # 25 # checkaeres.sh23 # .. code-block:: bash 24 # 25 # checkaeres.sh 26 26 # 27 27 # SEE ALSO … … 41 41 # ==== 42 42 # 43 # FINIR de r édiger43 # FINIR de rédiger 44 44 # 45 45 # log … … 47 47 # phybiocar theme 48 48 # 49 # selection par les ann ées après avoir tester les champs year sur toute la49 # selection par les années aprÚs avoir tester les champs year sur toute la 50 50 # biblio 51 51 # 52 # traiter le cas connu du doi commun àplusieurs publi = 10.5270/OceanObs0952 # traiter le cas connu du doi commun à plusieurs publi = 10.5270/OceanObs09 53 53 # 54 54 # EVOLUTIONS … … 80 80 AIX|IRIX64) 81 81 echo "${command} : www : no specific posix checking" 82 ;;83 *)84 set -o posix85 ;;82 ;; 83 *) 84 set -o posix 85 ;; 86 86 esac 87 87 # … … 111 111 unset tool 112 112 unset status 113 #114 113 # 115 114 # default … … 137 136 # 138 137 bib2bib -oc ${bibliocite} -ob ${biblioref} \ 139 140 138 -c 'year>=2007 and year<=2012' \ 139 ${biblioreffull} 141 140 read a 142 141 # … … 146 145 then 147 146 echo "${command} : www : pb twindoi" >&2 148 echo "${command} : www : might be armful l" >&2149 #++ pas de sortie car OceanObs doi multiplubli exit 0147 echo "${command} : www : might be armful" >&2 148 #++ pas de sortie car OceanObs doi multipubli exit 0 150 149 fi 151 150 unset status … … 193 192 echo " see ${fcitemissingloceanteam}" 194 193 echo " and ${fbibmissingloceanteam}" 195 echo "${command} : www : might be armful l" >&2194 echo "${command} : www : might be armful" >&2 196 195 #++exit 1 197 196 else -
branches/bibliolocean/src/define_authors.sh
r343 r354 11 11 # ======== 12 12 # 13 # ::14 # 15 # ++define_authors.sh ``13 # .. code-block:: bash 14 # 15 # ++define_authors.sh 16 16 # 17 17 # DESCRIPTION … … 19 19 # 20 20 # define author for : 21 # 21 22 # - search in bibtex file (in author field) 22 # - give a element of HTML filename (no diacritical and no punct ation)23 # - give a element of HTML filename (no diacritical and no punctuation) 23 24 # 24 25 # SEE ALSO … … 39 40 # - fplod 20130905T103648Z cratos.locean-ipsl.upmc.fr (Linux) 40 41 # 41 # * add Racap é, Virginie42 # * add Racapé, Virginie 42 43 # 43 44 # - fplod 20130724T133904Z cratos.locean-ipsl.upmc.fr (Linux) … … 84 85 # 85 86 iauthor=$(( ${iauthor} + 1)) 86 list_author_bibtool[${iauthor}]="Pinsard, Fran çoise"87 list_author_title[${iauthor}]="Fran çoise Pinsard"87 list_author_bibtool[${iauthor}]="Pinsard, Françoise" 88 list_author_title[${iauthor}]="Françoise Pinsard" 88 89 list_author_file[${iauthor}]="Pinsard_francoise" 89 90 # ++ python auteur="Francoise Pinsard" … … 98 99 # 99 100 iauthor=$(( ${iauthor} + 1)) 100 list_author_bibtool[${iauthor}]="L évy, Marina"101 list_author_title[${iauthor}]="Marina L évy"101 list_author_bibtool[${iauthor}]="Lévy, Marina" 102 list_author_title[${iauthor}]="Marina Lévy" 102 103 list_author_file[${iauthor}]="Levy_marina" 103 104 # … … 123 124 # 124 125 iauthor=$(( ${iauthor} + 1)) 125 list_author_bibtool[${iauthor}]="Menk ès, Christophe E."126 list_author_title[${iauthor}]="Christophe Menk ès"126 list_author_bibtool[${iauthor}]="MenkÚs, Christophe E." 127 list_author_title[${iauthor}]="Christophe MenkÚs" 127 128 list_author_file[${iauthor}]="Menkes_christophe" 128 129 # … … 133 134 # 134 135 iauthor=$(( ${iauthor} + 1)) 135 list_author_bibtool[${iauthor}]=" Éthé, Christian"136 list_author_title[${iauthor}]="Christian Éthé"136 list_author_bibtool[${iauthor}]="Ãthé, Christian" 137 list_author_title[${iauthor}]="Christian Ãthé" 137 138 list_author_file[${iauthor}]="Ethe_christian" 138 139 # 139 140 iauthor=$(( ${iauthor} + 1)) 140 list_author_bibtool[${iauthor}]="Pous, St éphane"141 list_author_title[${iauthor}]="St éphane Pous"141 list_author_bibtool[${iauthor}]="Pous, Stéphane" 142 list_author_title[${iauthor}]="Stéphane Pous" 142 143 list_author_file[${iauthor}]="Pous_stephane" 143 144 # … … 148 149 # 149 150 iauthor=$(( ${iauthor} + 1)) 150 list_author_bibtool[${iauthor}]="Colas, Fran çois"151 list_author_title[${iauthor}]="Fran çois Colas"151 list_author_bibtool[${iauthor}]="Colas, François" 152 list_author_title[${iauthor}]="François Colas" 152 153 list_author_file[${iauthor}]="Colas_francois" 153 154 # 154 155 iauthor=$(( ${iauthor} + 1)) 155 list_author_bibtool[${iauthor}]="Masson, S ébastien"156 list_author_title[${iauthor}]="S ébastien Masson"156 list_author_bibtool[${iauthor}]="Masson, Sébastien" 157 list_author_title[${iauthor}]="Sébastien Masson" 157 158 list_author_file[${iauthor}]="Masson_sebastien" 158 159 # 159 160 iauthor=$(( ${iauthor} + 1)) 160 list_author_bibtool[${iauthor}]="L évy, Claire"161 list_author_title[${iauthor}]="Claire L évy"161 list_author_bibtool[${iauthor}]="Lévy, Claire" 162 list_author_title[${iauthor}]="Claire Lévy" 162 163 list_author_file[${iauthor}]="Levy_claire" 163 164 # … … 178 179 # 179 180 iauthor=$(( ${iauthor} + 1)) 180 list_author_bibtool[${iauthor}]="Cott é, Cédric"181 list_author_title[${iauthor}]="C édric Cotté"181 list_author_bibtool[${iauthor}]="Cotté, Cédric" 182 list_author_title[${iauthor}]="Cédric Cotté" 182 183 list_author_file[${iauthor}]="Cotte_cedric" 183 184 # 184 185 iauthor=$(( ${iauthor} + 1)) 185 list_author_bibtool[${iauthor}]="Charrassin, Jean-Beno ît"186 list_author_title[${iauthor}]="Jean-Beno ît Charrassin"186 list_author_bibtool[${iauthor}]="Charrassin, Jean-Benoît" 187 list_author_title[${iauthor}]="Jean-Benoît Charrassin" 187 188 list_author_file[${iauthor}]="Charrassin_jeanbenoit" 188 189 # … … 203 204 # 204 205 iauthor=$(( ${iauthor} + 1)) 205 list_author_bibtool[${iauthor}]="Vialard, J érôme"206 list_author_title[${iauthor}]="J érôme Vialard"206 list_author_bibtool[${iauthor}]="Vialard, JérÃŽme" 207 list_author_title[${iauthor}]="JérÃŽme Vialard" 207 208 list_author_file[${iauthor}]="Vialard_jerome" 208 209 # 209 210 iauthor=$(( ${iauthor} + 1)) 210 list_author_bibtool[${iauthor}]="Lef èvre, Nathalie"211 list_author_title[${iauthor}]="Nathalie Lef èvre"211 list_author_bibtool[${iauthor}]="LefÚvre, Nathalie" 212 list_author_title[${iauthor}]="Nathalie LefÚvre" 212 213 list_author_file[${iauthor}]="Lefevre_nathalie" 213 214 # … … 248 249 # 249 250 iauthor=$(( ${iauthor} + 1)) 250 list_author_bibtool[${iauthor}]="Le Goff, Herv é"251 list_author_title[${iauthor}]="Herv éLe Goff"251 list_author_bibtool[${iauthor}]="Le Goff, Hervé" 252 list_author_title[${iauthor}]="Hervé Le Goff" 252 253 list_author_file[${iauthor}]="Legoff_herve" 253 254 # 254 255 iauthor=$(( ${iauthor} + 1)) 255 list_author_bibtool[${iauthor}]="Ridame, C éline"256 list_author_title[${iauthor}]="C éline Ridame"256 list_author_bibtool[${iauthor}]="Ridame, Céline" 257 list_author_title[${iauthor}]="Céline Ridame" 257 258 list_author_file[${iauthor}]="Ridame_celine" 258 259 # 259 260 iauthor=$(( ${iauthor} + 1)) 260 list_author_bibtool[${iauthor}]="Mass é, Guillaume"261 list_author_title[${iauthor}]="Guillaume Mass é"261 list_author_bibtool[${iauthor}]="Massé, Guillaume" 262 list_author_title[${iauthor}]="Guillaume Massé" 262 263 list_author_file[${iauthor}]="Masse_guillaume" 263 264 # … … 288 289 # 289 290 iauthor=$(( ${iauthor} + 1)) 290 list_author_bibtool[${iauthor}]="M élice, Jean-Luc"291 list_author_title[${iauthor}]="Jean-Luc M élice"291 list_author_bibtool[${iauthor}]="Mélice, Jean-Luc" 292 list_author_title[${iauthor}]="Jean-Luc Mélice" 292 293 list_author_file[${iauthor}]="Melice_jeanluc" 293 294 # … … 298 299 # 299 300 iauthor=$(( ${iauthor} + 1)) 300 list_author_bibtool[${iauthor}]="Houssais, Marie-No ëlle"301 list_author_title[${iauthor}]="Marie-No ëlle Houssais"301 list_author_bibtool[${iauthor}]="Houssais, Marie-Noëlle" 302 list_author_title[${iauthor}]="Marie-Noëlle Houssais" 302 303 list_author_file[${iauthor}]="Houssais_marienoelle" 303 304 # … … 318 319 # 319 320 iauthor=$(( ${iauthor} + 1)) 320 list_author_bibtool[${iauthor}]="Cr épon, Michel"321 list_author_title[${iauthor}]="Michel Cr épon"321 list_author_bibtool[${iauthor}]="Crépon, Michel" 322 list_author_title[${iauthor}]="Michel Crépon" 322 323 list_author_file[${iauthor}]="Crepon_michel" 323 324 # … … 333 334 # 334 335 iauthor=$(( ${iauthor} + 1)) 335 list_author_bibtool[${iauthor}]="Vivier, Fr éderic"336 list_author_title[${iauthor}]="Fr éderic Vivier"336 list_author_bibtool[${iauthor}]="Vivier, Frédéric" 337 list_author_title[${iauthor}]="Frédéric Vivier" 337 338 list_author_file[${iauthor}]="Vivier_frederic" 338 339 # … … 343 344 # 344 345 iauthor=$(( ${iauthor} + 1)) 345 list_author_bibtool[${iauthor}]="Louren ço, Antonio"346 list_author_title[${iauthor}]="Antonio Louren ço"346 list_author_bibtool[${iauthor}]="Lourenço, Antonio" 347 list_author_title[${iauthor}]="Antonio Lourenço" 347 348 list_author_file[${iauthor}]="Lourenco_antonio" 348 349 # … … 384 385 iauthor=$(( ${iauthor} + 1)) 385 386 list_author_bibtool[${iauthor}]="Le Cornec, Florence" 386 list_author_title[$ iauthor]="Florence Le Cornec"387 list_author_title[${iauthor}]="Florence Le Cornec" 387 388 list_author_file[${iauthor}]="Lecornec_florence" 388 389 # 389 390 iauthor=$(( ${iauthor} + 1)) 390 391 list_author_bibtool[${iauthor}]="Mandeng-Yogo, Magloire" 391 list_author_title[$ iauthor]="Magloire Mandeng-Yogo"392 list_author_title[${iauthor}]="Magloire Mandeng-Yogo" 392 393 list_author_file[${iauthor}]="Mandengyogo_magloire" 393 394 # 394 395 iauthor=$(( ${iauthor} + 1)) 395 list_author_bibtool[${iauthor}]="S émah, Anne-Marie"396 list_author_title[$ iauthor]="Anne-Marie Sémah"396 list_author_bibtool[${iauthor}]="Sémah, Anne-Marie" 397 list_author_title[${iauthor}]="Anne-Marie Sémah" 397 398 list_author_file[${iauthor}]="Semah_annemarie" 398 399 # 399 400 iauthor=$(( ${iauthor} + 1)) 400 401 list_author_bibtool[${iauthor}]="Boucher, Hugues" 401 list_author_title[$ iauthor]="Hugues Boucher"402 list_author_title[${iauthor}]="Hugues Boucher" 402 403 list_author_file[${iauthor}]="Boucher_hugues" 403 404 # 404 405 iauthor=$(( ${iauthor} + 1)) 405 406 list_author_bibtool[${iauthor}]="Sifeddine, Abdelfettah" 406 list_author_title[$ iauthor]="Abdelfettah Sifeddine"407 list_author_title[${iauthor}]="Abdelfettah Sifeddine" 407 408 list_author_file[${iauthor}]="Sifeddine_abdelfettah" 408 409 # 409 410 iauthor=$(( ${iauthor} + 1)) 410 411 list_author_bibtool[${iauthor}]="Wirrmann, Denis" 411 list_author_title[$ iauthor]="Denis Wirrmann"412 list_author_title[${iauthor}]="Denis Wirrmann" 412 413 list_author_file[${iauthor}]="Wirrmann_denis" 413 414 # 414 415 iauthor=$(( ${iauthor} + 1)) 415 416 list_author_bibtool[${iauthor}]="Cetin, Fethye" 416 list_author_title[$ iauthor]="Fethye Cetin"417 list_author_title[${iauthor}]="Fethye Cetin" 417 418 list_author_file[${iauthor}]="Cetin_fethye" 418 419 # 419 420 iauthor=$(( ${iauthor} + 1)) 420 list_author_bibtool[${iauthor}]="F évrier, Sabine"421 list_author_title[${iauthor}]="Sabine F évrier"421 list_author_bibtool[${iauthor}]="Février, Sabine" 422 list_author_title[${iauthor}]="Sabine Février" 422 423 list_author_file[${iauthor}]="Fevrier_sabine" 423 424 # 424 425 iauthor=$(( ${iauthor} + 1)) 425 list_author_bibtool[${iauthor}]="Sirven, J érôme"426 list_author_title[${iauthor}]="J érôme Sirven"426 list_author_bibtool[${iauthor}]="Sirven, JérÃŽme" 427 list_author_title[${iauthor}]="JérÃŽme Sirven" 427 428 list_author_file[${iauthor}]="Sirven_jerome" 428 429 # … … 433 434 # 434 435 iauthor=$(( ${iauthor} + 1)) 435 list_author_bibtool[${iauthor}]="Guilyardi, Éric"436 list_author_title[${iauthor}]=" Éric Guilyardi"436 list_author_bibtool[${iauthor}]="Guilyardi, Ãric" 437 list_author_title[${iauthor}]="Ãric Guilyardi" 437 438 list_author_file[${iauthor}]="Guilyardi_eric" 438 439 # … … 478 479 # 479 480 iauthor=$(( ${iauthor} + 1)) 480 list_author_bibtool[${iauthor}]="Demange, J érôme"481 list_author_title[${iauthor}]="J érôme Demange"481 list_author_bibtool[${iauthor}]="Demange, JérÃŽme" 482 list_author_title[${iauthor}]="JérÃŽme Demange" 482 483 list_author_file[${iauthor}]="Demange_jerome" 483 484 # … … 508 509 # 509 510 iauthor=$(( ${iauthor} + 1)) 510 list_author_bibtool[${iauthor}]="Lacarra, Ma ïté"511 list_author_title[${iauthor}]="Ma ïtéLacarra"511 list_author_bibtool[${iauthor}]="Lacarra, Maïté" 512 list_author_title[${iauthor}]="Maïté Lacarra" 512 513 list_author_file[${iauthor}]="Lacarra_maite" 513 514 # … … 528 529 # 529 530 iauthor=$(( ${iauthor} + 1)) 530 list_author_bibtool[${iauthor}]="Taphanel, Marie-H élène"531 list_author_title[${iauthor}]="Marie-H élène Taphanel"531 list_author_bibtool[${iauthor}]="Taphanel, Marie-HélÚne" 532 list_author_title[${iauthor}]="Marie-HélÚne Taphanel" 532 533 list_author_file[${iauthor}]="Taphanel_mariehelene" 533 534 # … … 548 549 # 549 550 iauthor=$(( ${iauthor} + 1)) 550 list_author_bibtool[${iauthor}]="Racap é, Virginie"551 list_author_title[${iauthor}]="Virginie Racap é"551 list_author_bibtool[${iauthor}]="Racapé, Virginie" 552 list_author_title[${iauthor}]="Virginie Racapé" 552 553 list_author_file[${iauthor}]="Racape_virginie" 553 554 # -
branches/bibliolocean/src/define_phybiocar_theme.sh
r214 r354 9 9 # ======== 10 10 # 11 # ::11 # .. code-block:: bash 12 12 # 13 13 # . define_phybiocar_theme … … 17 17 # 18 18 # define phybiocar themes for : 19 # 19 20 # - search in bibtex file (in phybiocartheme field) 20 # - give a element of HTML filename (no diacritical and no punct ation)21 # - give a element of HTML filename (no diacritical and no punctuation) 21 22 # 22 23 # TODO … … 31 32 # 32 33 # * creation according to docbilan_0.docx provided by Laurence Eymard today 33 # and handwritte dnotes from Marina Levy beginning june34 # and handwritten notes from Marina Levy beginning june 34 35 # 35 36 #- … … 37 38 iphybiocartheme=1 38 39 list_phybiocartheme_bibtool[${iphybiocartheme}]="1" 39 list_phybiocartheme_title[${iphybiocartheme}]="Processus de m éso et submesoéchelle"40 list_phybiocartheme_title[${iphybiocartheme}]="Processus de méso et submesoéchelle" 40 41 list_phybiocartheme_file[${iphybiocartheme}]="processus" 41 42 iphybiocartheme=$(( ${iphybiocartheme} + 1)) 42 43 list_phybiocartheme_bibtool[${iphybiocartheme}]="2" 43 list_phybiocartheme_title[${iphybiocartheme}]=" Ecosystèmes"44 list_phybiocartheme_title[${iphybiocartheme}]="ÃcosystÚmes" 44 45 list_phybiocartheme_file[${iphybiocartheme}]="ecosystemes" 45 46 iphybiocartheme=$(( ${iphybiocartheme} + 1)) -
branches/bibliolocean/src/define_teams.sh
r226 r354 7 7 # 8 8 # define team for : 9 # 9 10 # - search in bibtex file (in loceanteam field) 10 # - give a element of HTML filename (no diacritical and no punct ation)11 # - give a element of HTML filename (no diacritical and no punctuation) 11 12 # 12 13 # SYNOPSIS 13 14 # ======== 14 15 # 15 #16 16 # DESCRIPTION 17 17 # =========== 18 #19 18 # 20 19 # TODO … … 45 44 list_team_title[${iteam}]="varclim" 46 45 iteam=$(( ${iteam} + 1)) 47 list_team_bibtool[${iteam}]="austral-bor éal"46 list_team_bibtool[${iteam}]="austral-boréal" 48 47 list_team_title[${iteam}]="austral-boreal" 49 48 iteam=$(( ${iteam} + 1)) … … 51 50 list_team_title[${iteam}]="bio_et_pal" 52 51 iteam=$(( ${iteam} + 1)) 53 list_team_bibtool[${iteam}]="pal éotropique"52 list_team_bibtool[${iteam}]="paléotropique" 54 53 list_team_title[${iteam}]="paleotropique" 55 54 iteam=$(( ${iteam} + 1)) … … 80 79 list_team_bibtool[${iteam}]="vartrop" 81 80 list_team_title[${iteam}]="vartrop" 82 export list_team_bibtool 81 export list_team_bibtool 83 82 export list_team_title -
branches/bibliolocean/src/define_teams_aeres2007_2012.sh
r226 r354 7 7 # 8 8 # define team for : 9 # 9 10 # - search in bibtex file (in loceanteam field) 10 # - give a element of HTML filename (no diacritical and no punct ation)11 # - give a element of HTML filename (no diacritical and no punctuation) 11 12 # 12 13 # SYNOPSIS … … 48 49 list_team_title[${iteam}]="varclim" 49 50 iteam=$(( ${iteam} + 1)) 50 list_team_bibtool[${iteam}]="austral-bor éal"51 list_team_bibtool[${iteam}]="austral-boréal" 51 52 list_team_title[${iteam}]="austral-boreal" 52 53 iteam=$(( ${iteam} + 1)) -
branches/bibliolocean/src/genaeres.sh
r351 r354 9 9 # ======== 10 10 # 11 # ``./genaeres.sh`` 11 # .. code-block:: bash 12 # 13 # ./genaeres.sh`` 12 14 # 13 15 # DESCRIPTION … … 24 26 # ==== 25 27 # 26 # int egrer dans trunk superbib28 # intégrer dans trunk superbib 27 29 # 28 30 # on ne voit pas les notes des unpublished dans le pdf plain … … 48 50 # - fplod 20120706T101813Z cratos (Linux) 49 51 # 50 # * add phybiocar theme (bouzin mais ça marche)52 # * add phybiocar theme (bouzin mais ça marche) 51 53 # 52 54 # - fplod 20120705T101524Z cratos (Linux) 53 55 # 54 # * nouvelle technique de s élection avec bib2bib55 # donc les unpublished avec des champs year sont maintenant s électionnés56 # * nouvelle technique de sélection avec bib2bib 57 # donc les unpublished avec des champs year sont maintenant sélectionnés 56 58 # thanks to http://www.lri.fr/~filliatr/bibtex2html/doc/manual.html#htoc14 57 # * int égration de genaeres_rtf.sh59 # * intégration de genaeres_rtf.sh 58 60 # 59 61 # - fplod 20120419T121614Z cratos (Linux) … … 64 66 # - fplod 20120406 65 67 # 66 # * cr eation sans répéter certaines fonctionalités de genbib.sh67 # comme les v érif. de bases, les tutuelles68 # * création sans répéter certaines fonctionnalités de genbib.sh 69 # comme les vérifications de bases, les tutelles 68 70 # 69 71 #- … … 126 128 mkdir -p ${dirwww} 127 129 # 128 # copy javascript and css for sort table in 130 # copy javascript and css for sort table in output directory 129 131 cp sorttable.js ${dirwww}/ 130 132 cp sorttable.css ${dirwww}/ … … 138 140 # 139 141 bib2bib -oc ${bibliocite} -ob ${biblioref} \ 140 141 142 # 143 # ++ useful lartificial header of jabref file to enforce encoding142 -c 'year>=2007 and year<=2012' \ 143 ${biblioreffull} 144 # 145 # ++ useful artificial header of jabref file to enforce encoding 144 146 jabref_header ${tmpdir}/header_jabref 145 147 # 146 # g énération du PDF classique148 # génération du PDF classique 147 149 list_style="plain" #+++ 148 150 for style in ${list_style} … … 229 231 rm ${biblioref}.${format}.jabref.html 2> /dev/null 230 232 java -jar ${JABREF_DIR}/JabRef-${JABREF_VERSION}.jar -n true \ 231 232 233 233 -p ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \ 234 --output ${dirwww}/${output_title}_${list_team_title[iteam]}.${format}.jabref.html,${format} \ 235 ${fteam} 234 236 jabref_status=${?} 235 237 if [ ${jabref_status} -ne 0 ] 236 238 then 237 echo "${command} : ${LINENO} : eee : pb with jabref export ${format}"238 exit 1239 echo "${command} : ${LINENO} : eee : pb with jabref export ${format}" 240 exit 1 239 241 fi 240 242 # generation one RTF file … … 242 244 rm ${ofteam} 2> /dev/null 243 245 jabref_rtf \ 244 245 246 ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \ 247 ${fteam} ${ofteam} 246 248 jabref_status=${?} 247 249 if [ ${jabref_status} -ne 0 ] 248 250 then 249 echo "${command} : ${LINENO} : eee : pb with jabref rtf team"250 exit 1251 echo "${command} : ${LINENO} : eee : pb with jabref rtf team" 252 exit 1 251 253 fi 252 254 # loop on years … … 254 256 for iyear in ${list_year} 255 257 do 256 echo "${command} : ${LINENO} : iii : year = ${iyear}"257 fteamyear=${tmpdir}/$(basename ${fteam} .bib)_${iyear}.bib258 rm${fteamyear} 2> /dev/null259 bibtool_command="bibtool -- 'select={year \"${iyear}\"}' ${fteam} -o ${fteamyear}"260 eval ${bibtool_command}261 unset bibtool_command262 # test if empty263 nbatteamyear=$(grep -c @ ${fteamyear})264 if [ ${nbatteamyear} -ge 2 ]265 then266 echo "${command} : ${LINENO} : iii : $((${nbatteamyear} - 1)) ref for aeresteam ${list_team_title[${iteam}]} and year ${iyear}"267 list_fteamyear="${list_fteamyear} ${fteamyear}"268 else269 echo "${command} : ${LINENO} : www : no ref for aeresteam ${list_team_title[${iteam}]} and year ${iyear}"270 fi271 unset nbatteamyear272 done # end of year loop273 unset iyear258 echo "${command} : ${LINENO} : iii : year = ${iyear}" 259 fteamyear=${tmpdir}/$(basename ${fteam} .bib)_${iyear}.bib 260 rm ${fteamyear} 2> /dev/null 261 bibtool_command="bibtool -- 'select={year \"${iyear}\"}' ${fteam} -o ${fteamyear}" 262 eval ${bibtool_command} 263 unset bibtool_command 264 # test if empty 265 nbatteamyear=$(grep -c @ ${fteamyear}) 266 if [ ${nbatteamyear} -ge 2 ] 267 then 268 echo "${command} : ${LINENO} : iii : $((${nbatteamyear} - 1)) ref for aeresteam ${list_team_title[${iteam}]} and year ${iyear}" 269 list_fteamyear="${list_fteamyear} ${fteamyear}" 270 else 271 echo "${command} : ${LINENO} : www : no ref for aeresteam ${list_team_title[${iteam}]} and year ${iyear}" 272 fi 273 unset nbatteamyear 274 done # end of year loop 275 unset iyear 274 276 else 275 echo "${command} : ${LINENO} : www : no ref for aeresteam ${list_team_title[${iteam}]}"277 echo "${command} : ${LINENO} : www : no ref for aeresteam ${list_team_title[${iteam}]}" 276 278 fi 277 279 unset nbatteam … … 347 349 exit 1 348 350 fi 349 350 351 351 #++ else 352 #++ echo "${command} : ${LINENO} : iii : no reference for author ${team}" 353 #++ fi 352 354 iauthor=$(( ${iauthor} + 1 )) 353 355 done … … 367 369 format=locean_tablerefsabsbibsort 368 370 rm ${biblioref}.${format}.jabref.html 2> /dev/null 369 370 371 372 371 java -jar ${JABREF_DIR}/JabRef-${JABREF_VERSION}.jar -n true \ 372 -p ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \ 373 --output ${dirwww}/${output_title}_phybiocar.${format}.jabref.html,${format} \ 374 ${fteam} 373 375 jabref_status=${?} 374 376 if [ ${jabref_status} -ne 0 ] 375 377 then 376 echo "${command} : ${LINENO} : eee : pb with jabref export ${format}"377 exit 1378 echo "${command} : ${LINENO} : eee : pb with jabref export ${format}" 379 exit 1 378 380 fi 379 381 # loop on themes … … 385 387 echo "${command} : ${LINENO} : iii : theme = ${theme}" 386 388 fteamtheme=${tmpdir}/$(basename ${fteam} .bib)_${theme}.bib 387 rm 389 rm ${fteamtheme} 2> /dev/null 388 390 bibtool_command="bibtool -- 'select={phybiocartheme \"${theme}\"}' ${fteam} -o ${fteamtheme}" 389 391 eval ${bibtool_command} … … 393 395 if [ ${nbatteamtheme} -ge 2 ] 394 396 then 395 396 397 echo "${command} : ${LINENO} : iii : $((${nbatteamtheme} - 1)) ref for aeresteam phybiocar and theme ${theme} in ${fteam}" 398 list_fteamtheme="${list_fteamtheme} ${fteamtheme}" 397 399 else 398 400 echo "${command} : ${LINENO} : www : no ref for aeresteam phybiocar and theme ${theme}" 399 401 fi 400 402 #read a 401 403 unset nbatteamtheme 402 404 # loop on years … … 404 406 for iyear in ${list_year} 405 407 do 406 echo "${command} : ${LINENO} : iii : year = ${iyear}"407 fteamthemeyear=${tmpdir}/$(basename ${fteam} .bib)_${theme}_${iyear}.bib408 rm${fteamthemeyear} 2> /dev/null409 bibtool_command="bibtool -- 'select={year \"${iyear}\"}' ${fteamtheme} -o ${fteamthemeyear}"410 eval ${bibtool_command}411 unset bibtool_command412 # test if empty413 nbatteamthemeyear=$(grep -c @ ${fteamthemeyear})414 if [ ${nbatteamthemeyear} -ge 2 ]415 then416 echo "${command} : ${LINENO} : iii : $((${nbatteamthemeyear} - 1)) ref for aeresteam phybiocar and theme ${theme} and year ${iyear}"417 list_fteamthemeyear="${list_fteamthemeyear} ${fteamthemeyear}"418 else419 echo "${command} : ${LINENO} : www : no ref for aeresteam phybiocar and theme ${theme} and year ${iyear}"420 fi421 #read a422 unset nbatteamthemeyear423 done # end of year loop408 echo "${command} : ${LINENO} : iii : year = ${iyear}" 409 fteamthemeyear=${tmpdir}/$(basename ${fteam} .bib)_${theme}_${iyear}.bib 410 rm ${fteamthemeyear} 2> /dev/null 411 bibtool_command="bibtool -- 'select={year \"${iyear}\"}' ${fteamtheme} -o ${fteamthemeyear}" 412 eval ${bibtool_command} 413 unset bibtool_command 414 # test if empty 415 nbatteamthemeyear=$(grep -c @ ${fteamthemeyear}) 416 if [ ${nbatteamthemeyear} -ge 2 ] 417 then 418 echo "${command} : ${LINENO} : iii : $((${nbatteamthemeyear} - 1)) ref for aeresteam phybiocar and theme ${theme} and year ${iyear}" 419 list_fteamthemeyear="${list_fteamthemeyear} ${fteamthemeyear}" 420 else 421 echo "${command} : ${LINENO} : www : no ref for aeresteam phybiocar and theme ${theme} and year ${iyear}" 422 fi 423 #read a 424 unset nbatteamthemeyear 425 done # end of year loop 424 426 done # end of them loop 425 427 unset iyear … … 441 443 for fteamthemeyear in ${list_fteamthemeyear} 442 444 do 443 echo "${command} : ${LINENO} : iii : fteamthemeyear = ${fteamthemeyear}"444 #++ add header445 fteamthemeyeartype=${tmpdir}/$(basename ${fteamthemeyear} .bib)_${aerestype}.bib446 rm ${fteamthemeyeartype} 2> /dev/null447 bibtool_command="bibtool -- 'select={aerestype \"${aerestype}\"}' ${fteamthemeyear} -o ${fteamthemeyeartype}"448 eval ${bibtool_command}449 unset bibtool_command450 # test if empty451 nbatteamthemeyeartype=$(grep -c @ ${fteamthemeyeartype})452 if [ ${nbatteamthemeyeartype} -ge 2 ]453 then454 echo "${command} : ${LINENO} : iii : $((${nbatteamthemeyeartype} - 1)) ref type ${aerestype} in ${fteamthemeyear}"455 ofteamthemeyeartype=${dirwww}/$(basename ${fteamthemeyeartype} .bib).rtf456 rm ${ofteamthemeyeartype} 2> /dev/null457 jabref_rtf \458 ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \459 ${fteamthemeyeartype} ${ofteamthemeyeartype}460 # ++ test si ok461 else462 echo "${command} : ${LINENO} : www : no ref type ${aerestype} in ${fteamthemeyear}"463 fi464 unset nbatteamthemeyeartype445 echo "${command} : ${LINENO} : iii : fteamthemeyear = ${fteamthemeyear}" 446 #++ add header 447 fteamthemeyeartype=${tmpdir}/$(basename ${fteamthemeyear} .bib)_${aerestype}.bib 448 rm ${fteamthemeyeartype} 2> /dev/null 449 bibtool_command="bibtool -- 'select={aerestype \"${aerestype}\"}' ${fteamthemeyear} -o ${fteamthemeyeartype}" 450 eval ${bibtool_command} 451 unset bibtool_command 452 # test if empty 453 nbatteamthemeyeartype=$(grep -c @ ${fteamthemeyeartype}) 454 if [ ${nbatteamthemeyeartype} -ge 2 ] 455 then 456 echo "${command} : ${LINENO} : iii : $((${nbatteamthemeyeartype} - 1)) ref type ${aerestype} in ${fteamthemeyear}" 457 ofteamthemeyeartype=${dirwww}/$(basename ${fteamthemeyeartype} .bib).rtf 458 rm ${ofteamthemeyeartype} 2> /dev/null 459 jabref_rtf \ 460 ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \ 461 ${fteamthemeyeartype} ${ofteamthemeyeartype} 462 # ++ test si ok 463 else 464 echo "${command} : ${LINENO} : www : no ref type ${aerestype} in ${fteamthemeyear}" 465 fi 466 unset nbatteamthemeyeartype 465 467 done # end of loop on fteamthemeyear 466 468 done # end of loop on aerestype -
branches/bibliolocean/src/genbib.sh
r351 r354 9 9 # ======== 10 10 # 11 # ``./genbib.sh`` 11 # .. code-block:: bash 12 # 13 # ./genbib.sh 12 14 # 13 15 # DESCRIPTION 14 16 # =========== 15 17 # 16 #17 18 # TODO 18 19 # ==== 19 20 # 20 # plainnat pourvoir les doi dans le pdf mais des effets de bord 21 # sur les champs url et un doi ne passe pas peut- être àcause de "-"21 # plainnat pourvoir les doi dans le pdf mais des effets de bord 22 # sur les champs url et un doi ne passe pas peut-être à cause de "-" 22 23 # 23 24 # pb avec l'apostrophe dans les noms d'auteurs avec bibtool 24 25 # 25 # pb biber pour manger toutes les r éférences : TeX capacity exceeded, sorry26 # pb biber pour manger toutes les références : TeX capacity exceeded, sorry 26 27 # 27 28 # find missing hal/tel reference with bibtool … … 46 47 # bibtex2html --no-abstract --no-keywords --title "Bibliographie du LOCEAN" --footer "$(date)" --style "alpha" --use-keys --raw-url ~/locean/hal/gtbiblio/biblioref.bib 47 48 # 48 # Pour récupérer tous les bibtexkey dans le html produit :: 49 # 50 # $ grep ">bib<" biblioref.html | sed -e "s/.*#//" -e "s/\">.*$//" > list1 51 # 52 # Pour récupérer tous les bibtexkey dans le fichier original:: 53 # 54 # $ grep "@.*{" ../data/biblioref.bib | sed -e "/PREAM/d" -e "s/.*{//" -e "s/,$//" > list2 55 # 56 # Faire la différence:: 57 # 58 # $ sdiff list1 list2 59 # 60 # vérifier que les mois sont dans la liste 61 # locale -k abmon | tr [:upper:] [:lower:] 49 # Pour récupérer tous les bibtexkey dans le html produit : 50 # 51 # .. code-block:: bash 52 # 53 # grep ">bib<" biblioref.html | sed -e "s/.*#//" -e "s/\">.*$//" > list1 54 # 55 # Pour récupérer tous les bibtexkey dans le fichier original: 56 # 57 # .. code-block:: bash 58 # 59 # grep "@.*{" ../data/biblioref.bib | sed -e "/PREAM/d" -e "s/.*{//" -e "s/,$//" > list2 60 # 61 # Faire la différence: 62 # 63 # .. code-block:: bash 64 # 65 # sdiff list1 list2 66 # 67 # vérifier que les mois sont dans la liste 68 # 69 # .. code-block:: bash 70 # 71 # locale -k abmon | tr [:upper:] [:lower:] 62 72 # 63 73 # changer le titre des pages HTML 64 74 # 65 # contrôler le vocabulaire des champs pour avoir la liste des mots utilisés 66 # nb : c'est mieux de faire ça après avoir resauver sous jabref pour uniformiser les séparateurs et les blancs devant 67 # chaque option:: 68 # 69 # 70 # $ grep " = {" biblioref.bib | awk -F = '{print $1}' | sed -e "s/ //g" | sort -u 71 # 72 # pour voir nom/prénom dans la version bibtex (seulemen pour l'oeil ++):: 73 # 74 # $ grep "author" biblioref.bib | sed -e "s/author = {//" -e "s/},$//" | awk -F " and" '{print $NF}' | sort -u | more 75 # 76 # Pour corriger la version docbook : remplacer lastname par surname, ajouter la balise debut <bibliography>, 75 # contrÃŽler le vocabulaire des champs pour avoir la liste des mots utilisés 76 # nb : c'est mieux de faire ça aprÚs avoir resauver sous jabref pour 77 # uniformiser les séparateurs et les blancs devant 78 # chaque option: 79 # 80 # .. code-block:: bash 81 # 82 # grep " = {" biblioref.bib | awk -F = '{print $1}' | sed -e "s/ //g" | sort -u 83 # 84 # pour voir nom/prénom dans la version bibtex (seulemen pour l'oeil ++): 85 # 86 # .. code-block:: bash 87 # 88 # grep "author" biblioref.bib | sed -e "s/author = {//" -e "s/},$//" | awk -F " and" '{print $NF}' | sort -u | more 89 # 90 # Pour corriger la version docbook : remplacer lastname par surname, 91 # ajouter la balise debut <bibliography>, 77 92 # remplacer authorgroup dans la doctype par bibliography 78 93 # 79 # Pour voir les nom_prenom à patir de la version docbook :: 80 # 81 # $ xml sel -t -m "//author" -v "concat(surname,' ',firstname)" -n /usr/work/incas/fplod/public_html/gtbiblio/all.docbook.jabref.xml | sort -u |more 82 # 83 # ou sur mac lion:: 84 # 85 # $ xmlstarlet sel -t -m "//author" -v "concat(surname,' ',firstname)" -n /tmp/fplod/public_html/gtbiblio/all.docbook.jabref.xml | sort -u |more 86 # 87 # pour voir la liste des journaux:: 88 # 89 # grep "journal *= *{" biblioref.bib | sed -e "s/journal *= {//" -e "s/},$//g" | sort -u | more 90 # 94 # Pour voir les nom_prenom à patir de la version docbook : 95 # 96 # .. code-block:: bash 97 # 98 # xml sel -t -m "//author" -v "concat(surname,' ',firstname)" -n /usr/work/incas/fplod/public_html/gtbiblio/all.docbook.jabref.xml | sort -u |more 99 # 100 # ou sur mac lion: 101 # 102 # .. code-block:: bash 103 # 104 # xmlstarlet sel -t -m "//author" -v "concat(surname,' ',firstname)" -n /tmp/fplod/public_html/gtbiblio/all.docbook.jabref.xml | sort -u |more 105 # 106 # pour voir la liste des journaux: 107 # 108 # .. code-block:: bash 109 # 110 # grep "journal *= *{" biblioref.bib | sed -e "s/journal *= {//" -e "s/},$//g" | sort -u | more 91 111 # 92 112 # EVOLUTIONS … … 135 155 # - fplod 20120217 136 156 # 137 # * ajout des auteurs de l' équipe surf157 # * ajout des auteurs de l'équipe surf 138 158 # 139 159 # - fplod 20120131 140 160 # 141 # * les non publi és sont mainteant tout simplement des @unpublished161 # * les non publiés sont maintenant tout simplement des @unpublished 142 162 # (plus de ruse avec year={xxxx, *}) 143 163 # 144 164 # - fplod 20111010T073116Z aedon.locean-ipsl.upmc.fr (Darwin) 145 165 # 146 # * cr éation page thesesud166 # * création page thesesud 147 167 # 148 168 # - fplod 20110610T100740Z aedon.locean-ipsl.upmc.fr (Darwin) 149 169 # 150 170 # * suppression upmc et labex 151 # * ajout cr éation page these171 # * ajout création page these 152 172 # 153 173 # - fplod 20110511T155810Z cratos.locean-ipsl.upmc.fr (Linux) … … 158 178 # 159 179 # * la production pdflatex+bibtex ne fonctionne plus sur aedon. 160 # malgr è le changement d'installation (port vs fink) rien àfaire !161 # donc - et ça va plutôt dans le bon sens - machine de référence = cratos.180 # malgré le changement d'installation (port vs fink) rien à faire ! 181 # donc - et ça va plutÃŽt dans le bon sens - machine de référence = cratos. 162 182 # 163 183 # - fplod 20110301T091253Z aedon.locean-ipsl.upmc.fr (Darwin) … … 174 194 # ++ suppression in revision, submitted and so on 175 195 # ++ correction $...$ et Monaco C. L. en Lo Monaco C. 176 # ++ je ne sais pas pourquoi rien n'apparait en ouvrant le RTF produit avec # TextEdit alors que l'on voit qqe chose en l'ouvrant directement avec 177 # OpenOffice. 196 # ++ je ne sais pas pourquoi rien n'apparait en ouvrant le RTF produit 197 # avec TextEdit alors que l'on voit qqe chose en l'ouvrant directement avec 198 # OpenOffice. 178 199 # 179 200 # - fplod 20101108T103903Z aedon.locean-ipsl.upmc.fr (Darwin) … … 280 301 esac 281 302 # 282 #283 303 log_date=$(date -u +"%Y%m%dT%H%M%SZ") 284 304 log=/tmp/$(basename ${command} .sh).log.${log_date} … … 311 331 . jabref_header.sh 312 332 # 313 # copy javascript and css for sort table in 333 # copy javascript and css for sort table in output directory 314 334 cp sorttable.js ${dirwww}/ 315 335 cp sorttable.css ${dirwww}/ … … 317 337 # define team for : 318 338 # - search in bibtex file (in loceanteam field) 319 # - give a element of HTML filename (no diacritical and no punct ation)339 # - give a element of HTML filename (no diacritical and no punctuation) 320 340 iteam=1 321 341 list_team_bibtool[${iteam}]="phybiocar" … … 328 348 list_team_title[${iteam}]="varclim" 329 349 iteam=$(( ${iteam} + 1)) 330 list_team_bibtool[${iteam}]="austral-bor éal"350 list_team_bibtool[${iteam}]="austral-boréal" 331 351 list_team_title[${iteam}]="austral-boreal" 332 352 iteam=$(( ${iteam} + 1)) … … 334 354 list_team_title[${iteam}]="bio_et_pal" 335 355 iteam=$(( ${iteam} + 1)) 336 list_team_bibtool[${iteam}]="pal éotropique"356 list_team_bibtool[${iteam}]="paléotropique" 337 357 list_team_title[${iteam}]="paleotropique" 338 358 iteam=$(( ${iteam} + 1)) … … 365 385 # 366 386 # define affectation for : 387 # 367 388 # - search in bibtex file (in loceanaffectation field) 368 # - give a element of HTML filename (no diacritical and no punctation) 389 # - give a element of HTML filename (no diacritical and no punctuation) 390 # 369 391 iaffectation=1 370 392 list_affectation_bibtool[${iaffectation}]="mnhn" … … 389 411 cp ${biblioref_orig} ${biblioref} 390 412 # 391 #392 413 # test if "[delta]" 393 414 # if so, exit with error … … 457 478 458 479 # test if doi does'nt start with 10 459 # ++ je ne sais pas r édiger cette contrainte en grep480 # ++ je ne sais pas rédiger cette contrainte en grep 460 481 # if so, exit with error 461 482 list_bad_doi="" … … 475 496 then 476 497 echo "${command} : eee : suppress \{ or \} from pages field in ${list_bad_pages}" 477 #++exit 1498 #++exit 1 478 499 fi 479 500 unset list_bad_pages … … 481 502 # test if semi-cadratin++ translation in pages field (because of HAL bibtex output) 482 503 # if so, exit with error 483 484 504 #++echo "${command} : eee : ++ suppress ++ semi-cadratin from pages fied in ${list_bad_pages}" 505 #++exit 1 485 506 486 507 # artificial header of jabref file to enforce encoding … … 557 578 read a 558 579 # 559 # pour v érifier que j'ai bien tout mes styles d'exportation560 # pour m émoire580 # pour vérifier que j'ai bien tout mes styles d'exportation 581 # pour mémoire 561 582 #java -jar ${JABREF_DIR}/JabRef-${JABREF_VERSION}.jar -n true \ 562 583 #-p ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml -h … … 682 703 exit 1 683 704 fi 684 #++ else685 #++ echo "${command} : iii : no reference for team ${team}"686 #++ fi705 #++ else 706 #++ echo "${command} : iii : no reference for team ${team}" 707 #++ fi 687 708 iteam=$(( ${iteam} + 1 )) 688 709 done … … 773 794 ${biblioref_author} 774 795 jabref_status=${?} 775 read a776 796 if [ ${jabref_status} -ne 0 ] 777 797 then … … 779 799 exit 1 780 800 fi 781 #++ else782 #++ echo "${command} : iii : no reference for author ${team}"783 #++ fi801 #++ else 802 #++ echo "${command} : iii : no reference for author ${team}" 803 #++ fi 784 804 iauthor=$(( ${iauthor} + 1 )) 785 805 done -
branches/bibliolocean/src/genprehal.sh
r274 r354 9 9 # ======== 10 10 # 11 # ``./genprehal.sh`` 11 # .. code-block:: bash 12 # 13 # ./genprehal.sh`` 12 14 # 13 15 # DESCRIPTION … … 16 18 # prehal ++ 17 19 # 20 # en fait j'ai renoncé à générer un XML parce que l'import massif de HAL 21 # me ... (censuré) 22 # 23 # mais avec la commande suivante, on peut facilement avec 24 # http://adsabs.harvard.edu/bib_abs.html, demander une série de code ads 25 # qui sont utilisables dans le phase "depot" manuelle de HAL: 26 # 27 # .. code-block:: bash 28 # 29 # grep doi /usr/work/incas/fplod/log//gtbiblio/prehal//missinghalidfull.bib | sed -e "s/doi *= *{//" -e "s/}.*$//" 30 # 18 31 # SEE ALSO 19 32 # ======== … … 26 39 # ==== 27 40 # 28 # make it work : now xml produced by jabref are not ok .29 # see prehal*.layout30 # 31 # integrer dans trunk superbib41 # make it work : now xml produced by jabref are not ok and will never be 42 # 43 # HAL announce some bibtex importation facilities in a new release ... 44 # let see what should be done for affiliation issue 32 45 # 33 46 # EVOLUTIONS … … 41 54 # 42 55 # * ajout de la production d'un pdf pour pouvoir faire des copier/coller 43 # parce que l'importa ion massive trop pénible vue la mauvaise volonte44 # de HAL (plus de XSD facilement accessible, doc pas àjour etc.)56 # parce que l'importation massive trop pénible vue la mauvaise volonté 57 # de HAL (plus de XSD facilement accessible, doc pas à jour etc.) 45 58 # 46 59 # - fplod 20121108T124317Z cratos.locean-ipsl.upmc.fr (Linux) 47 60 # 48 # * creation par externalisation de la fonctionnalit é(pas fini) dans genbib61 # * creation par externalisation de la fonctionnalité (pas fini) dans genbib 49 62 # 50 63 #- … … 55 68 case "${system}" in 56 69 AIX|IRIX64) 57 echo "${command} : ${LINENO} : www : no specific posix checking"70 echo "${command} : ${LINENO} : www : no specific posix checking" 58 71 ;; 59 72 *) 60 set -o posix73 set -o posix 61 74 ;; 62 75 esac … … 89 102 mkdir -p ${tmpdir} 90 103 # 91 # useful lartificial header of jabref file to enforce encoding104 # useful artificial header of jabref file to enforce encoding 92 105 jabref_header ${tmpdir}/header_jabref 93 106 # … … 138 151 #++rm ${fbibmissinghalidfull}.${style}.tex 2> /dev/null 139 152 echo "fin 1re passe latex" 140 # g enereation rtf153 # génération rtf 141 154 jabref_rtf ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \ 142 155 ${fbibmissinghalidfull} toto.rtf … … 146 159 if [ ${nltot} -gt ${nlmax} ] 147 160 then 148 echo "${LINENO} : iii : more than ${nlmax} missing hal_id in ${biblioreffull}"149 echo "${LINENO} : iii : need to split"150 dsuffixsplit=$(dirname ${fcitemissinghalidfull})151 bsuffixsplit=$(basename ${fcitemissinghalidfull} .bib)_s152 split -l ${nlmax} -a 3 ${fcitemissinghalidfull} ${dsuffixsplit}/${bsuffixsplit}153 list_fcitemissinghalid=$(find ${dsuffixsplit} -name "${bsuffixsplit}???")154 list_fbibmissinghalid=""155 for fcitemissinghalid in ${list_fcitemissinghalid}156 do157 # build condition expression158 bib2bibcond=$(sed -e "s/^/-c '\$key : \"/" -e "s/$/\"'/" ${fcitemissinghalid} | paste -s -d ' ' )159 # extract the references160 fbibmissinghalid=${tmpdir}/$(basename ${fcitemissinghalid}).bib161 bib2bibcmd=$(echo "bib2bib ${bib2bibcond} -ob ${fbibmissinghalid} ${fbibmissinghalidfull}")162 eval ${bib2bibcmd}163 list_fbibmissinghalid="${list_fbibmissinghalid} ${fbibmissinghalid}"164 done161 echo "${LINENO} : iii : more than ${nlmax} missing hal_id in ${biblioreffull}" 162 echo "${LINENO} : iii : need to split" 163 dsuffixsplit=$(dirname ${fcitemissinghalidfull}) 164 bsuffixsplit=$(basename ${fcitemissinghalidfull} .bib)_s 165 split -l ${nlmax} -a 3 ${fcitemissinghalidfull} ${dsuffixsplit}/${bsuffixsplit} 166 list_fcitemissinghalid=$(find ${dsuffixsplit} -name "${bsuffixsplit}???") 167 list_fbibmissinghalid="" 168 for fcitemissinghalid in ${list_fcitemissinghalid} 169 do 170 # build condition expression 171 bib2bibcond=$(sed -e "s/^/-c '\$key : \"/" -e "s/$/\"'/" ${fcitemissinghalid} | paste -s -d ' ' ) 172 # extract the references 173 fbibmissinghalid=${tmpdir}/$(basename ${fcitemissinghalid}).bib 174 bib2bibcmd=$(echo "bib2bib ${bib2bibcond} -ob ${fbibmissinghalid} ${fbibmissinghalidfull}") 175 eval ${bib2bibcmd} 176 list_fbibmissinghalid="${list_fbibmissinghalid} ${fbibmissinghalid}" 177 done 165 178 else 166 echo "${LINENO} : iii : less or just ${nlmax} missing hal_id in ${biblioref}"167 echo "${LINENO} : iii : no need to split"168 fbibmissinghalid=${tmpdir}/missinghalid.bib169 list_fbibmissinghalid=${fbibmissinghalid}170 cp ${fbibmissinghalidfull} ${fbibmissinghalid}179 echo "${LINENO} : iii : less or just ${nlmax} missing hal_id in ${biblioref}" 180 echo "${LINENO} : iii : no need to split" 181 fbibmissinghalid=${tmpdir}/missinghalid.bib 182 list_fbibmissinghalid=${fbibmissinghalid} 183 cp ${fbibmissinghalidfull} ${fbibmissinghalid} 171 184 fi 172 185 for fbibmissinghalid in ${list_fbibmissinghalid} 173 186 do 174 fbibjmissinghalid=${tmpdir}/$(basename ${fbibmissinghalid} .bib)_jabref.bib175 more ${tmpdir}/header_jabref176 read a177 wc ${fbibmissinghalid}178 cat ${tmpdir}/header_jabref ${fbibmissinghalid} > ${fbibjmissinghalid}179 diff ${fbibmissinghalid} ${fbibjmissinghalid}180 read a181 #182 # generation one XML file style prehal183 fxmlmissinghalid=${tmpdir}/$(basename ${fbibmissinghalid}).xml184 rm ${fxmlmissinghalid} 2> /dev/null185 java -jar ${JABREF_DIR}/JabRef-${JABREF_VERSION}.jar -n true \186 187 188 189 read a187 fbibjmissinghalid=${tmpdir}/$(basename ${fbibmissinghalid} .bib)_jabref.bib 188 more ${tmpdir}/header_jabref 189 read a 190 wc ${fbibmissinghalid} 191 cat ${tmpdir}/header_jabref ${fbibmissinghalid} > ${fbibjmissinghalid} 192 diff ${fbibmissinghalid} ${fbibjmissinghalid} 193 read a 194 # 195 # generation one XML file style prehal 196 fxmlmissinghalid=${tmpdir}/$(basename ${fbibmissinghalid}).xml 197 rm ${fxmlmissinghalid} 2> /dev/null 198 java -jar ${JABREF_DIR}/JabRef-${JABREF_VERSION}.jar -n true \ 199 -p ${PROJECT}/../branches/bibliolocean/src/jabref.preferences.xml \ 200 --output ${fxmlmissinghalid},prehal \ 201 ${fbibjmissinghalid} 202 read a 190 203 done 191 204 else -
branches/bibliolocean/src/gtbiblio.xml
r244 r354 1 <?xml version="1.0" encoding=" iso-8859-1"?>1 <?xml version="1.0" encoding="utf-8"?> 2 2 <!DOCTYPE article [ 3 3 <!ENTITY % isopub SYSTEM "http://www.w3.org/2003/entities/iso8879/isopub.ent"> … … 14 14 =========== 15 15 16 pr ésentation des différentes versions de la bibliographie LOCEAN16 présentation des différentes versions de la bibliographie LOCEAN 17 17 18 18 EVOLUTIONS … … 23 23 $URL$ 24 24 25 - fplod 20131002T081623Z cratos.locean-ipsl.upmc.fr (Linux) 26 27 * add ird/2013 28 * add collection HAL 29 30 - fplod 20130102T104402Z cratos.locean-ipsl.upmc.fr (Linux) 31 32 * ajout 2013/tutelle 33 25 34 - fplod 20120706T150100Z cratos (Linux) 26 35 27 * mise à jour suite àconsolidation des outils AERES28 * mise à jour des fichiers en mentionnant mon working space du dépot superbib36 * mise à jour suite à consolidation des outils AERES 37 * mise à jour des fichiers en mentionnant mon working space du dépÃŽt superbib 29 38 30 39 - fplod 20120703T105755Z cratos (Linux) … … 38 47 - fplod 20120131 39 48 40 * add non publi és49 * add non publiés 41 50 42 51 - fplod 20120106 … … 46 55 - fplod 20111010T073804Z aedon.locean-ipsl.upmc.fr (Darwin) 47 56 48 * ajout d'un page th èse doctoranddu sud57 * ajout d'un page thÚse doctorant du sud 49 58 50 59 - fplod 20110610T101820Z aedon.locean-ipsl.upmc.fr (Darwin) 51 60 52 * ajout d'un page th èse61 * ajout d'un page thÚse 53 62 * suppression labex2007_2010 54 63 … … 95 104 <title>Bibliographie LOCEAN</title> 96 105 <authorgroup> 97 <author><personname><firstname>Fran çoise</firstname> <surname>Pinsard</surname></personname></author>106 <author><personname><firstname>Françoise</firstname> <surname>Pinsard</surname></personname></author> 98 107 </authorgroup> 99 108 <keywordset> 100 <keyword>LOC ÉAN</keyword>109 <keyword>LOCEAN</keyword> 101 110 <keyword>bibliographie</keyword> 102 111 <keyword>publication</keyword> … … 105 114 <keyword>latex</keyword> 106 115 </keywordset> 107 <pubdate>201 20706</pubdate>116 <pubdate>20131002</pubdate> 108 117 </info> 109 118 <sect1 xml:id="introduction"> … … 112 121 </title> 113 122 <para> 114 blabla gt bibilio <link xl:href="https://intranet.locean-ipsl.upmc.fr/wiki/index.php/GtBiblio"/> 115 </para> 116 <para> 117 blabla HAL <link xl:href="http://hal.archives-ouvertes.fr/">HAL</link>. 123 blabla gt biblio <link xl:href="https://intranet.locean-ipsl.upmc.fr/wiki/index.php/GtBiblio"/> 124 </para> 125 <para> 126 blabla <link xl:href="http://hal.archives-ouvertes.fr/">HAL</link>. 127 blabla <link xl:href="http://hal.archives-ouvertes.fr/LOCEAN">collection LOCEAN sous HAL</link>. 118 128 </para> 119 129 <para> … … 121 131 </para> 122 132 <para> 123 L'IRD demande les <quote>th èses soutenues sur les 3 dernières années par des124 doctorants du Sud (pays étrangers ET outre-mer français) encadrés par125 au moins un membre de l'unit é, qu'il soit agent IRD ou non</quote>.133 L'IRD demande les <quote>thÚses soutenues sur les 3 derniÚres années par des 134 doctorants du Sud (pays étrangers ET outre-mer français) encadrés par 135 au moins un membre de l'unité, qu'il soit agent IRD ou non</quote>. 126 136 </para> 127 137 <para> … … 131 141 132 142 <sect1> 133 <title>La référence</title> 134 <para> 135 Les références bibliographiques sont stockées sous format <literal>bibtex</literal>. 136 </para> 137 <para> 138 Des champs spécifiques comme <literal>loceanteam</literal> et <literal>loceanaffectation</literal> sont associés à chaque référence bibliographique afin de faciliter le répérage de sous-ensemble de références. 139 </para> 140 <para> 141 Pour assurer une homogénéité <footnote><para>encodage iso-latin-1, séparateur d'auteurs, ordre prénom-nom, <literal>bibtex key</literal>, etc.</para></footnote> sur cet ensemble, le fichier <filename>/usr/lodyc/incas/fplod/superbib/svn/branches/bibliolocean/data/biblioref.bib</filename> est maintenu par Françoise Pinsard. 142 </para> 143 <para> 144 L'alimentation de ce fichier a commencé en juillet 2009<footnote><para>Travail de Françoise Pinsard (équipe INCAS) et de Martin Powel (équipes PHYBIOCAR et SURF)</para></footnote> à partir des références bibliographiques des membres du laboratoire existantes sous HAL. 145 </para> 146 <para> 147 Un fichier de préférence de <application>Jabref</application> <filename>/usr/lodyc/incas/fplod/superbib/svn/branches/bibliolocean/src/jabref.preferences.xml</filename> est utilisé. 143 <title>La référence</title> 144 <para> 145 Les références bibliographiques sont stockées sous format <literal>bibtex</literal>. 146 </para> 147 <para> 148 Des champs spécifiques comme <literal>loceanteam</literal> et 149 <literal>loceanaffectation</literal> sont associés à chaque référence 150 bibliographique afin de faciliter le repérage de sous-ensemble de références. 151 </para> 152 <para> 153 Pour assurer une homogénéité <footnote><para>encodage iso-latin-1, séparateur d'auteurs, ordre prénom-nom, <literal>bibtex key</literal>, etc.</para></footnote> sur cet ensemble, le fichier <filename>/usr/lodyc/incas/fplod/superbib/svn/branches/bibliolocean/data/biblioref.bib</filename> est maintenu par Françoise Pinsard. 154 </para> 155 <para> 156 L'alimentation de ce fichier a commencé en juillet 2009<footnote><para>Travail de Françoise Pinsard (équipe INCAS) et de Martin Powel (équipes PHYBIOCAR et SURF)</para></footnote> à partir des références bibliographiques des membres du laboratoire existantes sous HAL. 157 </para> 158 <para> 159 Un fichier de préférence de <application>Jabref</application> <filename>/usr/lodyc/incas/fplod/superbib/svn/branches/bibliolocean/src/jabref.preferences.xml</filename> est utilisé. 148 160 </para> 149 161 </sect1> … … 151 163 <title>Les sorties</title> 152 164 <para> 153 L'outil <application>LaTeX</application> est utilis ée pour exporter165 L'outil <application>LaTeX</application> est utilisée pour exporter 154 166 les bibliographies sous PDF. 155 167 </para> 156 168 <sect2> 157 <title>Toutes les r éférences</title>158 <para> 159 Voici la liste des fichiers PDF produits àpartir de la bibliographie du laboratoire avec <command>pdflatex</command>169 <title>Toutes les références</title> 170 <para> 171 Voici la liste des fichiers PDF produits à partir de la bibliographie du laboratoire avec <command>pdflatex</command> 160 172 <itemizedlist> 161 173 <listitem> … … 168 180 169 181 <para> 170 L'outil <application>jabref</application> est utilis ée pour exporter171 les bibliographies sous diff érents formats (HTML, XML/DocBook, XML/HAL, RTF).172 </para> 173 <para> 174 Voici la liste des fichiers RTF produits à partir de la bibliographie du laboratoire et des formats proposés par <application>Jabref</application> :182 L'outil <application>jabref</application> est utilisée pour exporter 183 les bibliographies sous différents formats (HTML, XML/DocBook, XML/HAL, RTF). 184 </para> 185 <para> 186 Voici la liste des fichiers RTF produits à partir de la bibliographie du laboratoire et des formats proposés par <application>Jabref</application> : 175 187 <itemizedlist> 176 188 <listitem> … … 182 194 </para> 183 195 <para> 184 Voici la liste des fichiers HTML produits à partir de la bibliographie du laboratoire et des formats proposés par <application>Jabref</application> :196 Voici la liste des fichiers HTML produits à partir de la bibliographie du laboratoire et des formats proposés par <application>Jabref</application> : 185 197 <itemizedlist> 186 198 <listitem> … … 203 215 </para> 204 216 <para> 205 Voici la liste des fichiers HTML produits à partir de la bibliographie du laboratoire et de formats adaptés <footnote><para>cf. <filename>/usr/lodyc/incas/fplod/superbib/svn/branches/bibliolocean/src/locean*.layout</filename> <application>Jabref</application></para></footnote> :217 Voici la liste des fichiers HTML produits à partir de la bibliographie du laboratoire et de formats adaptés <footnote><para>cf. <filename>/usr/lodyc/incas/fplod/superbib/svn/branches/bibliolocean/src/locean*.layout</filename> <application>Jabref</application></para></footnote> : 206 218 <itemizedlist> 207 219 <listitem> … … 217 229 <listitem> 218 230 <para> 219 <link xl:href="../../these.html">Export JabRef des th èses avec le format locean_tablerefsabsbibsort</link>220 </para> 221 </listitem> 222 <listitem> 223 <para> 224 <link xl:href="../../thesesud.html">Export JabRef des th èses <quote>sud</quote> avec le format locean_tablerefsabsbibsort</link>225 </para> 226 <para> 227 Th èses soutenues par des doctorants du Sud (pays étrangers ET outre-mer228 fran çais) encadrés par au moins un membre de l'unité, qu'il soit agent IRD ou non231 <link xl:href="../../these.html">Export JabRef des thÚses avec le format locean_tablerefsabsbibsort</link> 232 </para> 233 </listitem> 234 <listitem> 235 <para> 236 <link xl:href="../../thesesud.html">Export JabRef des thÚses <quote>sud</quote> avec le format locean_tablerefsabsbibsort</link> 237 </para> 238 <para> 239 ThÚses soutenues par des doctorants du Sud (pays étrangers ET outre-mer 240 français) encadrés par au moins un membre de l'unité, qu'il soit agent IRD ou non 229 241 </para> 230 242 </listitem> … … 240 252 241 253 <para> 242 Voici la liste des fichiers HTML produits à partir de la bibliographie de chaque équipe <footnote><para>champ supplémentaire <literal>loceanteam</literal></para></footnote> du format adapté<literal>locean_listrefs</literal> :254 Voici la liste des fichiers HTML produits à partir de la bibliographie de chaque équipe <footnote><para>champ supplémentaire <literal>loceanteam</literal></para></footnote> du format adapté <literal>locean_listrefs</literal> : 243 255 <itemizedlist> 244 256 <listitem> … … 254 266 <listitem> 255 267 <simpara> 256 <link xl:href="../../austral-boreal.locean_listrefs.jabref.html">Austral-Bor éal</link>268 <link xl:href="../../austral-boreal.locean_listrefs.jabref.html">Austral-Boréal</link> 257 269 </simpara> 258 270 </listitem> … … 321 333 322 334 <para> 323 Voici la liste des fichiers HTML produits à partir de la bibliographie de chaque tutelle <footnote><para>champ supplémentaire <literal>loceanaffectation</literal></para></footnote> par année du format adapté <literal>locean_listrefs</literal> : 324 <itemizedlist> 325 326 <listitem> 327 <simpara> 328 <link xl:href="../../mnhn_unpublished.locean_listrefs.jabref.html">MNHN non publiés</link> 335 Voici la liste des fichiers HTML produits à partir de la bibliographie de chaque tutelle <footnote><para>champ supplémentaire <literal>loceanaffectation</literal></para></footnote> par année du format adapté <literal>locean_listrefs</literal> : 336 <itemizedlist> 337 338 <listitem> 339 <simpara> 340 <link xl:href="../../mnhn_unpublished.locean_listrefs.jabref.html">MNHN non publiés</link> 341 </simpara> 342 </listitem> 343 344 <listitem> 345 <simpara> 346 <link xl:href="../../mnhn_2013.locean_listrefs.jabref.html">MNHN 2013</link> 329 347 </simpara> 330 348 </listitem> … … 384 402 <listitem> 385 403 <simpara> 386 <link xl:href="../../ird_unpublished.locean_listrefs.jabref.html">IRD non publiés</link> 404 <link xl:href="../../ird_unpublished.locean_listrefs.jabref.html">IRD non publiés</link> 405 </simpara> 406 </listitem> 407 408 <listitem> 409 <simpara> 410 <link xl:href="../../ird_2013.locean_listrefs.jabref.html">IRD 2013</link> 387 411 </simpara> 388 412 </listitem> … … 492 516 <listitem> 493 517 <simpara> 494 <link xl:href="../../cnrs_unpublished.locean_listrefs.jabref.html">CNRS non publiés</link> 518 <link xl:href="../../cnrs_unpublished.locean_listrefs.jabref.html">CNRS non publiés</link> 519 </simpara> 520 </listitem> 521 522 <listitem> 523 <simpara> 524 <link xl:href="../../cnrs_2013.locean_listrefs.jabref.html">CNRS 2013</link> 495 525 </simpara> 496 526 </listitem> … … 549 579 <listitem> 550 580 <simpara> 551 <link xl:href="../../upmc_unpublished.locean_listrefs.jabref.html">UPMC non publiés</link> 552 </simpara> 553 </listitem> 554 581 <link xl:href="../../upmc_unpublished.locean_listrefs.jabref.html">UPMC non publiés</link> 582 </simpara> 583 </listitem> 584 585 <listitem> 586 <simpara> 587 <link xl:href="../../upmc_2013.locean_listrefs.jabref.html">UPMC 2013</link> 588 </simpara> 589 </listitem> 555 590 <listitem> 556 591 <simpara> … … 634 669 635 670 <para> 636 Vous trouverez dans le lien suivant la liste des publications dans la p ériode 2007-2012 :637 <link xl:href="../../all.locean_tablerefsabsbibsort.jabref.html">avec colonne <emphasis role="bold">AERES TYPE</emphasis> et <emphasis role="bold">AERES TEAM</emphasis> à compléter</link>638 </para> 639 <para> 640 Voici la liste des fichiers produits àpartir de la bibliographie de641 chaque équipe <footnote><para>champ supplémentaire <literal>aeresteam</literal> </para> </footnote> du format adapté<literal>locean_tablerefsabsbibsort</literal></para>642 <para> 643 Vous remarquerez que la liste des équipes est celle de quadriénal courant (2008-2012).671 Vous trouverez dans le lien suivant la liste des publications dans la période 2007-2012 : 672 <link xl:href="../../all.locean_tablerefsabsbibsort.jabref.html">avec colonne <emphasis role="bold">AERES TYPE</emphasis> et <emphasis role="bold">AERES TEAM</emphasis> à compléter</link> 673 </para> 674 <para> 675 Voici la liste des fichiers produits à partir de la bibliographie de 676 chaque équipe <footnote><para>champ supplémentaire <literal>aeresteam</literal> </para> </footnote> du format adapté <literal>locean_tablerefsabsbibsort</literal></para> 677 <para> 678 Vous remarquerez que la liste des équipes est celle de quadriennal courant (2008-2012). 644 679 </para> 645 680 <warning> 646 <para>Les r éférences dont la case <emphasis role="bold">AERES TEAM</emphasis> est vide n'apparaissent pas.</para>647 <para>Les r éférences dont la case <emphasis role="bold">AERES TYPE</emphasis> n'apparraissent pas forcément au bon endroit</para>681 <para>Les références dont la case <emphasis role="bold">AERES TEAM</emphasis> est vide n'apparaissent pas.</para> 682 <para>Les références dont la case <emphasis role="bold">AERES TYPE</emphasis> n'apparaissent pas forcément au bon endroit</para> 648 683 </warning> 649 684 <para> … … 661 696 <listitem> 662 697 <simpara> 663 <link xl:href="../../aeres2007_2012/aeres2007_2012_austral-boreal.locean_tablerefsabsbibsort.jabref.html">Austral-Bor éal</link>698 <link xl:href="../../aeres2007_2012/aeres2007_2012_austral-boreal.locean_tablerefsabsbibsort.jabref.html">Austral-Boréal</link> 664 699 </simpara> 665 700 </listitem> … … 701 736 </itemizedlist> 702 737 </para> 703 <para> Vous pouvez acc éder à tous les fichiers produits dans le cadre de l'AERES 2007-2012 en allant dans le répertoire738 <para> Vous pouvez accéder à tous les fichiers produits dans le cadre de l'AERES 2007-2012 en allant dans le répertoire 704 739 <link xl:href="../../aeres2007_2012/"/> 705 740 </para> 706 741 <para> 707 Il y a en particulier des fichiers RTF (util sables sous OpenOffice) par708 ( équipe,catégorie AERES) et (équipe,thème,catégorie AERES) pour phybiocar.742 Il y a en particulier des fichiers RTF (utilisables sous OpenOffice) par 743 (équipe, catégorie AERES) et (équipe, thÚme, catégorie AERES) pour phybiocar. 709 744 </para> 710 745 </sect2> -
branches/bibliolocean/src/html2oocalc.sh
r221 r354 5 5 # ======== 6 6 # 7 # ::7 # .. code-block:: bash 8 8 # 9 # html2oocalc.sh9 # html2oocalc.sh 10 10 # 11 # et ouvrir ce fichier ${PROJECT_OD}/aeres2007_2012.locean.for_oocalc.html avec oocalc3.2 12 # supprimer la 1ere ligne à la main 13 # 14 # sélectionner A1:J1055 (1055 dernière ligne) 11 # et ouvrir ce fichier 12 # ${PROJECT_OD}/aeres2007_2012.locean.for_oocalc.html avec oocalc3.2 13 # supprimer la 1ere ligne à la main 15 14 # 16 # imposer la taille du texte à 30 points au moins15 # sélectionner A1:J1055 (1055 derniÚre ligne) 17 16 # 18 # sauver sous ${PROJECT_OD}/aeres2007_2012.locean.xls (Word 2007 dans save as ...) 17 # imposer la taille du texte à 30 points au moins 18 # 19 # sauver sous ${PROJECT_OD}/aeres2007_2012.locean.xls 20 # (Word 2007 dans save as ...) 19 21 # 20 22 # SEE ALSO … … 26 28 # ==== 27 29 # 28 # nettoyer ou trouver une solution pour faire la conversion HTML vers XLS proprement 29 # 30 # apprendre sous oocalc à supprimer les milliers de colonnes après J : pour l'instant même avec Data/define Range je n'ai pas trouvé 30 # nettoyer ou trouver une solution pour faire la conversion HTML vers XLS 31 # proprement 32 # 33 # apprendre sous oocalc à supprimer les milliers de colonnes aprÚs J : pour 34 # l'instant même avec Data/define Range je n'ai pas trouvé 31 35 # 32 36 # EVOLUTIONS -
branches/bibliolocean/src/jabref_header.sh
r215 r354 3 3 ofile=${1} 4 4 { 5 echo "% This file was arti cifialy created for JabRef ${JABREF_VERSION}."5 echo "% This file was artificially created for JabRef ${JABREF_VERSION}." 6 6 echo "% Encoding: ISO8859_1" 7 7 echo " " -
branches/bibliolocean/src/twinloceanbibid.sh
r254 r354 11 11 # ======== 12 12 # 13 # ::13 # .. code-block:: bash 14 14 # 15 # twinloceanbibid.sh -i filein -t type 16 # 15 # twinloceanbibid.sh -i filein -t type 17 16 # 18 17 # DESCRIPTION 19 18 # =========== 20 #21 19 # 22 20 # .. option:: -i <filein> … … 28 26 # ======== 29 27 # 30 # To detect duplicate loceanbibid in a bibtex file: :28 # To detect duplicate loceanbibid in a bibtex file: 31 29 # 32 # twinloceanbibid.sh -i ../data/biblioref.bib -t bibtex 30 # .. code-block:: bash 31 # 32 # twinloceanbibid.sh -i ../data/biblioref.bib -t bibtex 33 33 # 34 34 # TODO … … 62 62 ;; 63 63 *) 64 set -o posix64 set -o posix 65 65 ;; 66 66 esac … … 80 80 if [ ${#} -lt ${minargcount} ] 81 81 then 82 echo "${command} : eee : not enough targuments"82 echo "${command} : eee : not enough arguments" 83 83 echo "${usage}" 84 84 exit 1 … … 98 98 ;; 99 99 *) 100 # other choice101 echo "${command} : eee : unknown option ${1}"102 echo "${usage}"103 exit 1100 # other choice 101 echo "${command} : eee : unknown option ${1}" 102 echo "${usage}" 103 exit 1 104 104 ;; 105 105 esac … … 121 121 ;; 122 122 *) 123 echo "${command} : eee : type should be bibtex"124 exit 1123 echo "${command} : eee : type should be bibtex" 124 exit 1 125 125 ;; 126 126 esac … … 128 128 # 129 129 case ${ftype} in 130 130 bibtex) 131 131 grep -i "loceanbibid *= *" ${filebibtex} | \ 132 133 134 135 132 sed -e "s/^.*loceanbibid *= *//" | \ 133 sed -e "s/^\(.*\)\.$/ \1/" | \ 134 grep -v "???" | \ 135 sort -d > ${PROJECT_LOG}/${action}${$}.txt 136 136 ;; 137 137 *) … … 167 167 echo "greatest id = ${greatestid}" 168 168 # 169 # clean ning169 # cleaning 170 170 rm ${PROJECT_LOG}/${action}${$}.txt 2> /dev/null 171 171 unset command -
branches/bibliolocean/src/userlocean.xml
r254 r354 1 <?xml version="1.0" encoding=" iso-8859-1"?>1 <?xml version="1.0" encoding="utf-8"?> 2 2 <!DOCTYPE users SYSTEM "user.dtd"> 3 3 <!-- … … 66 66 <user> 67 67 <!-- 68 list_author_bibtool[${iauthor}]="{F}ran çoise {P}insard"69 list_author_title[${iauthor}]="Fran çoise Pinsard"68 list_author_bibtool[${iauthor}]="{F}rançoise {P}insard" 69 list_author_title[${iauthor}]="Françoise Pinsard" 70 70 list_author_file[${iauthor}]="Pinsard_francoise" 71 71 ++ python auteur="Francoise Pinsard" … … 74 74 <userid>Pinsard_francoise</userid> 75 75 <personname> 76 <surname>Fran çoise Pinsard</surname>77 <firstname>Fran çoise Pinsard</firstname>76 <surname>Françoise Pinsard</surname> 77 <firstname>Françoise Pinsard</firstname> 78 78 <othername role='mi'></othername> 79 79 </personname> … … 98 98 <user> 99 99 <!-- 100 list_author_bibtool[${iauthor}]="{M}arina {L} évy"101 list_author_title[${iauthor}]="Marina L évy"100 list_author_bibtool[${iauthor}]="{M}arina {L}évy" 101 list_author_title[${iauthor}]="Marina Lévy" 102 102 list_author_file[${iauthor}]="Levy_marina" 103 103 --> 104 104 <userid>Levy_marina</userid> 105 105 <personname> 106 <surname>L évy</surname>106 <surname>Lévy</surname> 107 107 <firstname>Marina</firstname> 108 108 <othername role='mi'></othername> … … 168 168 <user> 169 169 <!-- 170 list_author_bibtool[${iauthor}]="{C}hristophe {E}. {M}enk ès"171 list_author_title[${iauthor}]="Christophe Menk ès"170 list_author_bibtool[${iauthor}]="{C}hristophe {E}. {M}enkÚs" 171 list_author_title[${iauthor}]="Christophe MenkÚs" 172 172 list_author_file[${iauthor}]="Menkes_christophe" 173 173 --> 174 174 <userid>Menkes_christophe</userid> 175 175 <personname> 176 <surname>Menk ès</surname>176 <surname>MenkÚs</surname> 177 177 <firstname>Christophe</firstname> 178 178 <othername role='mi'></othername> … … 196 196 <user> 197 197 <!-- 198 list_author_bibtool[${iauthor}]="{C}hristian { É}thé"199 list_author_title[${iauthor}]="Christian Éthé"198 list_author_bibtool[${iauthor}]="{C}hristian {Ã}thé" 199 list_author_title[${iauthor}]="Christian Ãthé" 200 200 list_author_file[${iauthor}]="Ethe_christian" 201 201 --> 202 202 <userid>Ethe_christian</userid> 203 203 <personname> 204 <surname> Éthé</surname>204 <surname>Ãthé</surname> 205 205 <firstname>Christian</firstname> 206 206 <othername role='mi'></othername> … … 224 224 <user> 225 225 <!-- 226 list_author_bibtool[${iauthor}]="{S}t éphane {P}ous"227 list_author_title[${iauthor}]="St éphane Pous"226 list_author_bibtool[${iauthor}]="{S}téphane {P}ous" 227 list_author_title[${iauthor}]="Stéphane Pous" 228 228 list_author_file[${iauthor}]="Pous_stephane" 229 229 --> … … 231 231 <personname> 232 232 <surname>Pous</surname> 233 <firstname>St éphane</firstname>233 <firstname>Stéphane</firstname> 234 234 <othername role='mi'></othername> 235 235 </personname> … … 252 252 <user> 253 253 <!-- 254 list_author_bibtool[${iauthor}]="{F}ran çois {C}olas"255 list_author_title[${iauthor}]="Fran çois Colas"254 list_author_bibtool[${iauthor}]="{F}rançois {C}olas" 255 list_author_title[${iauthor}]="François Colas" 256 256 list_author_file[${iauthor}]="Colas_francois" 257 257 --> … … 259 259 <personname> 260 260 <surname>Colas</surname> 261 <firstname>Fran çois</firstname>262 <othername role='mi'></othername> 263 </personname> 264 <email></email> 265 </user> 266 <user> 267 <!-- 268 list_author_bibtool[${iauthor}]="{S} ébastien {M}asson"269 list_author_title[${iauthor}]="S ébastien Masson"261 <firstname>François</firstname> 262 <othername role='mi'></othername> 263 </personname> 264 <email></email> 265 </user> 266 <user> 267 <!-- 268 list_author_bibtool[${iauthor}]="{S}ébastien {M}asson" 269 list_author_title[${iauthor}]="Sébastien Masson" 270 270 list_author_file[${iauthor}]="Masson_sebastien" 271 271 --> … … 273 273 <personname> 274 274 <surname>Masson</surname> 275 <firstname>S ébastien</firstname>276 <othername role='mi'></othername> 277 </personname> 278 <email></email> 279 </user> 280 <user> 281 <!-- 282 list_author_bibtool[${iauthor}]="{C}laire {L} évy"283 list_author_title[${iauthor}]="Claire L évy"275 <firstname>Sébastien</firstname> 276 <othername role='mi'></othername> 277 </personname> 278 <email></email> 279 </user> 280 <user> 281 <!-- 282 list_author_bibtool[${iauthor}]="{C}laire {L}évy" 283 list_author_title[${iauthor}]="Claire Lévy" 284 284 list_author_file[${iauthor}]="Levy_claire" 285 285 --> 286 286 <userid>Levy_claire</userid> 287 287 <personname> 288 <surname>L évy</surname>288 <surname>Lévy</surname> 289 289 <firstname>Claire</firstname> 290 290 <othername role='mi'></othername> … … 336 336 <user> 337 337 <!-- 338 list_author_bibtool[${iauthor}]="{C} édric {C}otté"339 list_author_title[${iauthor}]="C édric Cotté"338 list_author_bibtool[${iauthor}]="{C}édric {C}otté" 339 list_author_title[${iauthor}]="Cédric Cotté" 340 340 list_author_file[${iauthor}]="Cotte_cedric" 341 341 --> 342 342 <userid>Cotte_cedric</userid> 343 343 <personname> 344 <surname>Cott é</surname>345 <firstname>C édric</firstname>346 <othername role='mi'></othername> 347 </personname> 348 <email></email> 349 </user> 350 <user> 351 <!-- 352 list_author_bibtool[${iauthor}]="{J}ean-{B}eno ît {C}harrassin"344 <surname>Cotté</surname> 345 <firstname>Cédric</firstname> 346 <othername role='mi'></othername> 347 </personname> 348 <email></email> 349 </user> 350 <user> 351 <!-- 352 list_author_bibtool[${iauthor}]="{J}ean-{B}enoît {C}harrassin" 353 353 list_author_title[${iauthor}]="Jean-Benoit Charrassin" 354 354 list_author_file[${iauthor}]="Charrassin_jeanbenoit" … … 420 420 <user> 421 421 <!-- 422 list_author_bibtool[${iauthor}]="{J} érôme {V}ialard"423 list_author_title[${iauthor}]="J érôme Vialard"422 list_author_bibtool[${iauthor}]="{J}érÃŽme {V}ialard" 423 list_author_title[${iauthor}]="JérÃŽme Vialard" 424 424 list_author_file[${iauthor}]="Vialard_jerome" 425 425 --> … … 427 427 <personname> 428 428 <surname>Vialard</surname> 429 <firstname>J érôme</firstname>430 <othername role='mi'></othername> 431 </personname> 432 <email></email> 433 </user> 434 <user> 435 <!-- 436 list_author_bibtool[${iauthor}]="{N}athalie {L}ef èvre"437 list_author_title[${iauthor}]="Nathalie Lef èvre"429 <firstname>JérÃŽme</firstname> 430 <othername role='mi'></othername> 431 </personname> 432 <email></email> 433 </user> 434 <user> 435 <!-- 436 list_author_bibtool[${iauthor}]="{N}athalie {L}efÚvre" 437 list_author_title[${iauthor}]="Nathalie LefÚvre" 438 438 list_author_file[${iauthor}]="Lefevre_nathalie" 439 439 --> 440 440 <userid>Lefevre_nathalie</userid> 441 441 <personname> 442 <surname>Lef èvre</surname>442 <surname>LefÚvre</surname> 443 443 <firstname>Nathalie</firstname> 444 444 <othername role='mi'></othername> … … 546 546 <user> 547 547 <!-- 548 list_author_bibtool[${iauthor}]="{H}erv é{{L}e {G}off}}"549 list_author_title[${iauthor}]="Herv éLe Goff"548 list_author_bibtool[${iauthor}]="{H}ervé {{L}e {G}off}}" 549 list_author_title[${iauthor}]="Hervé Le Goff" 550 550 list_author_file[${iauthor}]="Legoff_herve" 551 551 --> … … 553 553 <personname> 554 554 <surname>Le Goff</surname> 555 <firstname>Herv é</firstname>556 <othername role='mi'></othername> 557 </personname> 558 <email></email> 559 </user> 560 <user> 561 <!-- 562 list_author_bibtool[${iauthor}]="{C} éline {R}idame"563 list_author_title[${iauthor}]="C éline Ridame"555 <firstname>Hervé</firstname> 556 <othername role='mi'></othername> 557 </personname> 558 <email></email> 559 </user> 560 <user> 561 <!-- 562 list_author_bibtool[${iauthor}]="{C}éline {R}idame" 563 list_author_title[${iauthor}]="Céline Ridame" 564 564 list_author_file[${iauthor}]="Ridame_celine" 565 565 --> … … 567 567 <personname> 568 568 <surname>Ridame</surname> 569 <firstname>C éline</firstname>570 <othername role='mi'></othername> 571 </personname> 572 <email></email> 573 </user> 574 <user> 575 <!-- 576 list_author_bibtool[${iauthor}]="{G}uillaume {M}ass é"577 list_author_title[${iauthor}]="Guillaume Mass é"569 <firstname>Céline</firstname> 570 <othername role='mi'></othername> 571 </personname> 572 <email></email> 573 </user> 574 <user> 575 <!-- 576 list_author_bibtool[${iauthor}]="{G}uillaume {M}assé" 577 list_author_title[${iauthor}]="Guillaume Massé" 578 578 list_author_file[${iauthor}]="Masse_guillaume" 579 579 --> 580 580 <userid>Masse_guillaume</userid> 581 581 <personname> 582 <surname>Mass é</surname>582 <surname>Massé</surname> 583 583 <firstname>Guillaume</firstname> 584 584 <othername role='mi'></othername> … … 658 658 <user> 659 659 <!-- 660 list_author_bibtool[${iauthor}]="{J}ean-{L}uc {M} élice"661 list_author_title[${iauthor}]="Jean-Luc M élice"660 list_author_bibtool[${iauthor}]="{J}ean-{L}uc {M}élice" 661 list_author_title[${iauthor}]="Jean-Luc Mélice" 662 662 list_author_file[${iauthor}]="Melice_jeanluc" 663 663 --> 664 664 <userid>Melice_jeanluc</userid> 665 665 <personname> 666 <surname>M élice</surname>666 <surname>Mélice</surname> 667 667 <firstname>Jean-Luc</firstname> 668 668 <othername role='mi'></othername> … … 686 686 <user> 687 687 <!-- 688 list_author_bibtool[${iauthor}]="{M}arie-{N}o ëlle {H}oussais"689 list_author_title[${iauthor}]="Marie-No ëlle Houssais"688 list_author_bibtool[${iauthor}]="{M}arie-{N}oëlle {H}oussais" 689 list_author_title[${iauthor}]="Marie-Noëlle Houssais" 690 690 list_author_file[${iauthor}]="Houssais_marienoelle" 691 691 --> … … 693 693 <personname> 694 694 <surname>Houssais</surname> 695 <firstname>Marie-No ëlle</firstname>695 <firstname>Marie-Noëlle</firstname> 696 696 <othername role='mi'></othername> 697 697 </personname> … … 756 756 <user> 757 757 <!-- 758 list_author_bibtool[${iauthor}]="{M}ichel {C}r épon"759 list_author_title[${iauthor}]="Michel Cr épon"758 list_author_bibtool[${iauthor}]="{M}ichel {C}répon" 759 list_author_title[${iauthor}]="Michel Crépon" 760 760 list_author_file[${iauthor}]="Crepon_michel" 761 761 --> 762 762 <userid>Crepon_michel</userid> 763 763 <personname> 764 <surname>Cr épon</surname>764 <surname>Crépon</surname> 765 765 <firstname>Michel</firstname> 766 766 <othername role='mi'></othername> … … 798 798 <user> 799 799 <!-- 800 list_author_bibtool[${iauthor}]="{F}r édéric {V}ivier"801 list_author_title[${iauthor}]="Fr éderic Vivier"800 list_author_bibtool[${iauthor}]="{F}rédéric {V}ivier" 801 list_author_title[${iauthor}]="Frédéric Vivier" 802 802 list_author_file[${iauthor}]="Vivier_frederic" 803 803 --> … … 805 805 <personname> 806 806 <surname>Vivier</surname> 807 <firstname>Fr éderic</firstname>807 <firstname>Frédéric</firstname> 808 808 <othername role='mi'></othername> 809 809 </personname> … … 826 826 <user> 827 827 <!-- 828 list_author_bibtool[${iauthor}]="{A}ntonio {L}ouren ço"829 list_author_title[${iauthor}]="Antonio Louren ço"828 list_author_bibtool[${iauthor}]="{A}ntonio {L}ourenço" 829 list_author_title[${iauthor}]="Antonio Lourenço" 830 830 list_author_file[${iauthor}]="Lourenco_antonio" 831 831 --> 832 832 <userid>Lourenco_antonio</userid> 833 833 <personname> 834 <surname>Louren ço</surname>834 <surname>Lourenço</surname> 835 835 <firstname>Antonio</firstname> 836 836 <othername role='mi'></othername> … … 966 966 <user> 967 967 <!-- 968 list_author_bibtool[${iauthor}]="{A}nne-{M}arie {S} émah"969 list_author_title[$iauthor]="Anne-Marie S émah"968 list_author_bibtool[${iauthor}]="{A}nne-{M}arie {S}émah" 969 list_author_title[$iauthor]="Anne-Marie Sémah" 970 970 list_author_file[${iauthor}]="Semah_annemarie" 971 971 --> 972 972 <userid>Semah_annemarie</userid> 973 973 <personname> 974 <surname>S émah</surname>974 <surname>Sémah</surname> 975 975 <firstname>Anne-Marie</firstname> 976 976 <othername role='mi'></othername> … … 1036 1036 <user> 1037 1037 <!-- 1038 list_author_bibtool[${iauthor}]="{S}abine {F} évrier"1039 list_author_title[${iauthor}]="Sabine F évrier"1038 list_author_bibtool[${iauthor}]="{S}abine {F}évrier" 1039 list_author_title[${iauthor}]="Sabine Février" 1040 1040 list_author_file[${iauthor}]="Fevrier_sabine" 1041 1041 --> 1042 1042 <userid>Fevrier_sabine</userid> 1043 1043 <personname> 1044 <surname>F évrier</surname>1044 <surname>Février</surname> 1045 1045 <firstname>Sabine</firstname> 1046 1046 <othername role='mi'></othername> … … 1050 1050 <user> 1051 1051 <!-- 1052 list_author_bibtool[${iauthor}]="{J} érôme {S}irven"1053 list_author_title[${iauthor}]="J érôme Sirven"1052 list_author_bibtool[${iauthor}]="{J}érÃŽme {S}irven" 1053 list_author_title[${iauthor}]="JérÃŽme Sirven" 1054 1054 list_author_file[${iauthor}]="Sirven_jerome" 1055 1055 --> … … 1057 1057 <personname> 1058 1058 <surname>Sirven</surname> 1059 <firstname>J érôme</firstname>1059 <firstname>JérÃŽme</firstname> 1060 1060 <othername role='mi'></othername> 1061 1061 </personname> … … 1078 1078 <user> 1079 1079 <!-- 1080 list_author_bibtool[${iauthor}]="{ É}ric {G}uilyardi"1081 list_author_title[${iauthor}]=" Éric Guilyardi"1080 list_author_bibtool[${iauthor}]="{Ã}ric {G}uilyardi" 1081 list_author_title[${iauthor}]="Ãric Guilyardi" 1082 1082 list_author_file[${iauthor}]="Guilyardi_eric" 1083 1083 --> … … 1085 1085 <personname> 1086 1086 <surname>Guilyardi</surname> 1087 <firstname> Éric</firstname>1087 <firstname>Ãric</firstname> 1088 1088 <othername role='mi'></othername> 1089 1089 </personname> … … 1134 1134 <user> 1135 1135 <!-- 1136 list_author_bibtool[${iauthor}]="{J}ean-{F}ran çois {S}aliège"1137 list_author_title[${iauthor}]="Jean-Fran çois Saliège"1136 list_author_bibtool[${iauthor}]="{J}ean-{F}rançois {S}aliÚge" 1137 list_author_title[${iauthor}]="Jean-François SaliÚge" 1138 1138 list_author_file[${iauthor}]="Saliege_jeanfrancois" 1139 1139 --> 1140 1140 <userid>Saliege_jeanfrancois</userid> 1141 1141 <personname> 1142 <surname>Sali ège</surname>1143 <firstname>Jean-Fran çois</firstname>1142 <surname>SaliÚge</surname> 1143 <firstname>Jean-François</firstname> 1144 1144 <othername role='mi'></othername> 1145 1145 </personname> -
trunk/bibopa.sh
r353 r354 662 662 jlist[${ij}]="Lecture notes in Physics" 663 663 ij=$(( ${ij} + 1)) 664 jlist[${ij}]="J. Mete rol. Soc. Japan"664 jlist[${ij}]="J. Meteorol. Soc. Japan" 665 665 ij=$(( ${ij} + 1)) 666 666 jlist[${ij}]="Journal of Marine Systems" -
trunk/checkmain.sh
r353 r354 108 108 # (see XFORM and so one) 109 109 # 110 # check for news on DocBook re alase (now 20110701 5.0)110 # check for news on DocBook release (now 20110701 5.0) 111 111 # 112 112 # EVOLUTIONS -
trunk/data/biball.xml
r353 r354 192 192 --> 193 193 <!-- original text 194 Ashrit, R. G., H. Douville, K. Rupa Kumar, 2003: Response of the Indian monsoon and ENSO-monsoon teleconnection to enhanced greenhouse effect in the CNRM coupled model. J. Mete rol. Soc. Japan, 81, 4, 779-803, doi:10.2151/jmsj.81.779194 Ashrit, R. G., H. Douville, K. Rupa Kumar, 2003: Response of the Indian monsoon and ENSO-monsoon teleconnection to enhanced greenhouse effect in the CNRM coupled model. J. Meteorol. Soc. Japan, 81, 4, 779-803, doi:10.2151/jmsj.81.779 195 195 --> 196 196 <authorgroup> … … 202 202 <biblioid class="doi">10.2151/jmsj.81.779</biblioid> 203 203 <biblioset relation="journal"> 204 <title>J. Mete rol. Soc. Japan</title>204 <title>J. Meteorol. Soc. Japan</title> 205 205 <volumenum>81</volumenum><issuenum>4</issuenum><pagenums>779-803</pagenums> 206 206 <pubdate>2003</pubdate> -
trunk/data/bibdemo1.xml
r353 r354 137 137 <biblioentry id="mace1912_01"> 138 138 <!-- original text 139 Mace, I. & Doyne, J. Sur les di erents types de reactions tomateuses chez la Cantatrice. Gaz. med. franco-rus. 6, 6-11, 1912.139 Mace, I. & Doyne, J. Sur les différents types de réactions tomateuses chez la Cantatrice. Gaz. med. franco-rus. 6, 6-11, 1912. 140 140 --> 141 141 <authorgroup> … … 147 147 </author> 148 148 </authorgroup> 149 <title> Sur les di erents types de reactions tomateuses chez la Cantatrice149 <title> Sur les différents types de réactions tomateuses chez la Cantatrice 150 150 </title> 151 151 <biblioset relation="journal"> -
trunk/data/maindemo1.xml
r353 r354 37 37 - fplod 20110701T122730Z cratos.locean-ipsl.upmc.fr (Linux) 38 38 39 * add e amil on first author39 * add email on first author 40 40 41 41 - fplod 2008-09-17T13:52:14Z aedon.locean-ipsl.upmc.fr (Darwin) -
trunk/doc/guides/html/style.css
r85 r354 177 177 178 178 /* Alignement des colonnes */ 179 /* Colu nms alignment */179 /* Columns alignment */ 180 180 181 181 td[align=center] , th[align=center] { text-align: center; } -
trunk/doc/manuals/html/many/bibopa.sh.html
r87 r354 398 398 <p>option debug</p> 399 399 <p>should use iconv instead of recode 400 for portability issue but not found yet the "flat" f onctionnality in400 for portability issue but not found yet the "flat" functionality in 401 401 iconv</p> 402 402 <p>write something in the logfile !</p> -
trunk/doc/manuals/html/one/index.html
r87 r354 583 583 <p>option debug</p> 584 584 <p>should use iconv instead of recode 585 for portability issue but not found yet the "flat" f onctionnality in585 for portability issue but not found yet the "flat" functionality in 586 586 iconv</p> 587 587 <p>write something in the logfile !</p> -
trunk/docs/docs_dev/source/conf.py
r353 r354 210 210 # (source start file, target name, title, author, documentclass [howto/manual]). 211 211 latex_documents = [ 212 ('contents', 'superbib_dev.tex', u'Superbib develop pers documentation', u'fp', 'manual'),212 ('contents', 'superbib_dev.tex', u'Superbib developers documentation', u'fp', 'manual'), 213 213 ] 214 214 … … 242 242 # (source start file, name, description, authors, manual section). 243 243 man_pages = [ 244 ('index', 'superbib', u'Superbib develop pers documentation',244 ('index', 'superbib', u'Superbib developers documentation', 245 245 [u'fp'], 1) 246 246 ] -
trunk/docs/docs_dev/source/guides/bibliography.rst
r353 r354 10 10 .. 11 11 .. * creation 12 .. thanks to http://tops.berlios.de/ for the toc and ReSt files12 .. thanks to http://tops.berlios.de/ for the toc and reStructuredText files 13 13 .. 14 14 .. - -
trunk/docs/docs_dev/source/guides/contributing.rst
r352 r354 11 11 .. 12 12 .. * creation 13 .. thanks to http://tops.berlios.de/ for the toc and ReSt files13 .. thanks to http://tops.berlios.de/ for the toc and reStructuredText files 14 14 .. 15 15 .. - -
trunk/docs/docs_dev/source/guides/index.rst
r177 r354 9 9 .. 10 10 .. * creation 11 .. thanks to http://tops.berlios.de/ for the toc and ReSt files11 .. thanks to http://tops.berlios.de/ for the toc and reStructuredText files 12 12 .. 13 13 .. - -
trunk/docs/docs_users/source/guides/requirements.rst
r352 r354 27 27 .. 28 28 .. * creation 29 .. thanks to http://tops.berlios.de/ for the toc and ReSt files29 .. thanks to http://tops.berlios.de/ for the toc and reStructuredText files 30 30 .. 31 31 .. - -
trunk/install.sh
r325 r354 55 55 # - fplod 2008-09-16T15:24:26Z aedon.locean-ipsl.upmc.fr (Darwin) 56 56 # 57 # * comments in ReStructuredText57 # * comments in reStructuredText 58 58 # 59 59 # - fplod 2008-06-17T09:10:19Z aedon.locean-ipsl.upmc.fr (Darwin) … … 102 102 if [ ${#} -lt ${minargcount} ] 103 103 then 104 echo "eee : not enough targuments"104 echo "eee : not enough arguments" 105 105 echo "${usage}" 106 106 exit 1 -
trunk/style.css
r33 r354 177 177 178 178 /* Alignement des colonnes */ 179 /* Colu nms alignment */179 /* Columns alignment */ 180 180 181 181 td[align=center] , th[align=center] { text-align: center; }
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