Index: /trunk/adm/makefile
===================================================================
--- /trunk/adm/makefile	(revision 204)
+++ /trunk/adm/makefile	(revision 205)
@@ -121,6 +121,5 @@
 pdf \
 pdf_dev \
-pdf_dev_sphinx \
-pdf_user
+pdf_dev_sphinx
 
 help :
@@ -147,6 +146,5 @@
 install_html_dev \
 install_html_user \
-install_pdf_dev \
-install_pdf_user
+install_pdf_dev
 
 install_html_dev :
@@ -158,7 +156,4 @@
 install_pdf_dev :
 	@$(DIRADM)/install.sh -w $(DIRWWW_DEV)/pdf/ -u $(URLPUBLISH_DEV)/pdf/
-
-install_pdf_user :
-	@$(DIRADM)/install.sh -w $(DIRWWW_USER)/pdf/ -u $(URLPUBLISH_USER)/pdf/
 
 clean : \
@@ -196,6 +191,5 @@
 
 all_user : \
-html_user \
-pdf_user
+html_user
 
 html : \
@@ -217,9 +211,5 @@
 
 pdf : \
-pdf_user \
 pdf_dev
-
-pdf_user :
-	cd $(DIRADM)/website/; make latexpdf
 
 pdf_dev :
Index: /trunk/adm/website/Makefile
===================================================================
--- /trunk/adm/website/Makefile	(revision 204)
+++ /trunk/adm/website/Makefile	(revision 205)
@@ -1,36 +1,14 @@
-# Makefile for Sphinx documentation
+# Makefile
 #
 
 # You can set these variables from the command line.
-SPHINXOPTS    =
-SPHINXBUILD   = sphinx-build
-PAPER         =
 BUILDDIR      = _build
 
-# Internal variables.
-PAPEROPT_a4     = -D latex_paper_size=a4
-PAPEROPT_letter = -D latex_paper_size=letter
-ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
-
-.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest
+.PHONY: help clean html
 
 help:
 	@echo "Please use \`make <target>' where <target> is one of"
-	@echo "  html       to make standalone HTML files"
-	@echo "  dirhtml    to make HTML files named index.html in directories"
-	@echo "  singlehtml to make a single large HTML file"
-	@echo "  pickle     to make pickle files"
-	@echo "  json       to make JSON files"
-	@echo "  htmlhelp   to make HTML files and a HTML help project"
-	@echo "  qthelp     to make HTML files and a qthelp project"
-	@echo "  devhelp    to make HTML files and a Devhelp project"
-	@echo "  epub       to make an epub"
-	@echo "  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
-	@echo "  latexpdf   to make LaTeX files and run them through pdflatex"
-	@echo "  text       to make text files"
-	@echo "  man        to make manual pages"
-	@echo "  changes    to make an overview of all changed/added/deprecated items"
-	@echo "  linkcheck  to check all external links for integrity"
-	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
+	@echo "  html       to make HTML file"
+	@echo "  clean      to clean"
 
 clean:
@@ -38,93 +16,10 @@
 
 html:
-	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
+	mkdir -p $(BUILDDIR)/html/
+	mkdir -p $(BUILDDIR)/html/_static/
+	cp _static/*.jpg $(BUILDDIR)/html/_static/
+	rst2html --strict --strip-comments \
+                 --input-encoding=UTF-8 \
+                 index.rst $(BUILDDIR)/html/index.html
 	@echo
-	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
-
-dirhtml:
-	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
-	@echo
-	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
-
-singlehtml:
-	$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
-	@echo
-	@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
-
-pickle:
-	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
-	@echo
-	@echo "Build finished; now you can process the pickle files."
-
-json:
-	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
-	@echo
-	@echo "Build finished; now you can process the JSON files."
-
-htmlhelp:
-	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
-	@echo
-	@echo "Build finished; now you can run HTML Help Workshop with the" \
-	      ".hhp project file in $(BUILDDIR)/htmlhelp."
-
-qthelp:
-	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
-	@echo
-	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
-	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
-	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/tropflux.qhcp"
-	@echo "To view the help file:"
-	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/tropflux.qhc"
-
-devhelp:
-	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
-	@echo
-	@echo "Build finished."
-	@echo "To view the help file:"
-	@echo "# mkdir -p $$HOME/.local/share/devhelp/tropflux"
-	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/tropflux"
-	@echo "# devhelp"
-
-epub:
-	$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
-	@echo
-	@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
-
-latex:
-	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
-	@echo
-	@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
-	@echo "Run \`make' in that directory to run these through (pdf)latex" \
-	      "(use \`make latexpdf' here to do that automatically)."
-
-latexpdf:
-	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
-	@echo "Running LaTeX files through pdflatex..."
-	make -C $(BUILDDIR)/latex all-pdf
-	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
-
-text:
-	$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
-	@echo
-	@echo "Build finished. The text files are in $(BUILDDIR)/text."
-
-man:
-	$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
-	@echo
-	@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
-
-changes:
-	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
-	@echo
-	@echo "The overview file is in $(BUILDDIR)/changes."
-
-linkcheck:
-	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
-	@echo
-	@echo "Link check complete; look for any errors in the above output " \
-	      "or in $(BUILDDIR)/linkcheck/output.txt."
-
-doctest:
-	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
-	@echo "Testing of doctests in the sources finished, look at the " \
-	      "results in $(BUILDDIR)/doctest/output.txt."
+	@echo "Build finished. The HTML page is in $(BUILDDIR)/html."
Index: unk/adm/website/Readme.rst
===================================================================
--- /trunk/adm/website/Readme.rst	(revision 204)
+++ 	(revision )
@@ -1,52 +1,0 @@
-TROPFLUX DATA README
-====================
-
-Complete information about the TropFlux project and data can be found at:
-       http://www.locean-ipsl.upmc.fr/tropflux/
-
-Short description of TropFlux
------------------------------
-
-The TropFlux project aims at providing daily, timely, accurate air-sea heat and momentum flux data for the entire 30Â°N-30Â°S region.  Wind stresses and the four components of net surface heat flux are currently available for the entire 1979 to March 2013 period. We are currently working on a regular (~monthly) update of the TropFlux product until 3-4 months behind realtime.
-
-TropFlux is largely derived from a combination of ERA-I re-analysis data for turbulent and longwave fluxes, and ISCCP surface radiation data for shortwave flux. All input products are bias- and amplitude-corrected on the basis of Global Tropical Moored Buoy Array data, before surface net heat flux and wind stresses are computed using the COARE v3 bulk algorithm. A precise description of the flux computation procedure, as well as a detailed evaluation against other timely, daily air-sea heat flux alternatives (OAFLUX, NCEP, NCEP2, ERA-I) is provided in Praveen Kumar et al. 2012. The wind stress product is described, evaluated and compared against other widely used products (QuikSCAT, NCEP, NCEP2, ERA-I) in Praveen Kumar et al. 2013
-
-We believe that this product offers the following advantages:
-
- - better variability and less biases than re-analysis fluxes (and equivalent or slightly better than the best performing products: OAFLUX for heat fluxes and ERA-I for wind stresses) ,
- - available until March 2013, and soon updated every month, lagging realtime by ~3 months,
- - a simple estimate of surface shortwave radiation is provided from OLR data, as a near-realtime alternative to the more accurate but irregularly updated ISCCP data.
-
-The TropFlux product has been developed under a collaboration between the Laboratoire d'OcÃ©anographie: ExpÃ©rimentation et Approches NumÃ©riques (LOCEAN) from Institut Pierre Simon Laplace, France and National Institute of Oceanography/CSIR, India. Bilateral scientific visits to France and India have been supported by Institut de Recherche pour le DÃ©veloppement, France.
-
-Data format
------------
-
-The following variables are provided:
-
- - surface net short wave radiation (swr, W/m^2, positive downward)
- - surface net longwave radiation (lwr, W/m^2, positive downward)
- - latent heat flux (lhf, W/m^2, positive downward)
- - sensible heat flux (shf, W/m^2, positive downward)
- - net air-sea flux (netflux, W/m^2, positive downward)
- - zonal wind stress (taux, N/m^2, positive eastward)
- - meridional wind stress (tauy, N/m^2, positive northward)
- - wind stress module (tau, N/m^2, positive)
- - wind module at 10m height (ws, m/s, positive)
- - Specific humidity at 2m height (q2m, g/kg, positive)
- - Air temperature at 2m height (t2m, degC)
- - Bulk sea surface temperature (sst, degC)
-
-The data is provided in NetCDF format, with one file per variable for the complete dataset.
-Daily (almost 1Gb per file) and monthly (32Mb per file) average data are proposed.
-The data is provided on a 1Â° resolution grid (with the same land-sea mask than for the OAFLUX project, http://oaflux.whoi.edu/ ).
-There are 60 points in latitude at -29.5, -28.5, ..., 28.5 (positive north of the equator).
-There are 350 points in longitude at 30.5, 31.5, ..., 379.5 (eastward of the Greenwich meridian).
-This choice on longitude has been made: to avoid including points with only land (in central Africa)and to avoid cutting through a tropical ocean.
-
-References
-----------
-
-Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden, 2012: TropFlux: Air-Sea Fluxes for the Global Tropical Oceans - Description and evaluation, Climate Dynamics, 38, 1521-1543, doi:10.1007/s00382-011-1115-0
-
-Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden, M.F. Cronin and F. Pinsard and K. Gopala Reddy, 2013: TropFlux wind stresses over the tropical oceans: evaluation and comparison with other products, Climate Dynamics, 40(7-8), 2049-2071, doi:10.1007/s00382-012-1455-4
Index: unk/adm/website/_static/default.css
===================================================================
--- /trunk/adm/website/_static/default.css	(revision 204)
+++ 	(revision )
@@ -1,507 +1,0 @@
-/**
- * Alternate Sphinx design
- * Originally created by Armin Ronacher for Werkzeug, adapted by Georg Brandl.
- */
-
-body {
-    font-family: 'Lucida Grande', 'Lucida Sans Unicode', 'Geneva', 'Verdana', sans-serif;
-    font-size: 14px;
-    letter-spacing: -0.01em;
-    line-height: 150%;
-    text-align: center;
-    /*background-color: #AFC1C4; */
-    background-color: #BFD1D4;
-    color: black;
-    padding: 0;
-    border: 1px solid #aaa;
-
-    margin: 0px 80px 0px 80px;
-    min-width: 740px;
-}
-
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-    background-color: #f8f8f8;
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-ul.search li {
-    padding: 5px 0 5px 20px;
-    background-image: url(file.png);
-    background-repeat: no-repeat;
-    background-position: 0 7px;
-}
-
-ul.search li a {
-    font-weight: bold;
-}
-
-ul.search li div.context {
-    color: #888;
-    margin: 2px 0 0 30px;
-    text-align: left;
-}
-
-ul.keywordmatches li.goodmatch a {
-    font-weight: bold;
-}
Index: unk/adm/website/bibliography_web.rst
===================================================================
--- /trunk/adm/website/bibliography_web.rst	(revision 204)
+++ 	(revision )
@@ -1,105 +1,0 @@
-.. +
-..
-.. TODO
-.. ====
-..
-.. connexion with superbib so will be replaced by file:`bibtropflux.xml` (action fp)
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20130725T130723Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * published works, doi links
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20111107T090527Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * fixes asked by pkb
-..
-.. - fplod 20111021T160012Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add Foltz2011 and Drushka2011 asked by pkb
-..
-.. - fplod 20110701T154552Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * short todo list : sphinx
-..
-.. - fplod 20110623T150238Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * new reference from JV
-..
-.. - fplod 20110622T075011Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * rename from bibliography.rst to bibliography_website.rst
-..     to avoid confusion with ad/guides/bibliography.rst
-..
-..   * add doi to KumarVialard
-..
-.. - fplod 20110421T085259Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add references about TAO/TRITON, PIRATA, and RAMA
-..
-.. - fplod 20110407T084904Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * suppress tools references
-..   * change links
-..
-.. - fplod 20101217T152744Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add OLR "how to cite" [LiebmannSmith:BAMS:1996]
-..
-.. - fplod 20101209T105850Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add some netcdf references
-..
-.. - fplod 20101208T165516Z zeus.locean-ipsl.upmc.fr (Linux)
-..
-..   * add link
-..
-.. - fplod 20101125T083049Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add submitted paper PraveenkumarVialard:CD:2010submitted
-..
-.. - fplod 20101118T172830Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _ bibliography:
-
-Bibliography
-============
-
-.. [PraveenkumarVialardEtAl:CD:2012] B. Praveen Kumar, J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden *TropFlux: Air-Sea Fluxes for the Global Tropical Oceans - Description and evaluation*, *Climate Dynamics*, 2012, 38, 1521-1543, `doi:10.1007/s00382-011-1115-0 <http://dx.doi.org/10.1007/s00382-011-1115-0>`_, `TropFlux_paper_accepted_r.pdf <http://www.locean-ipsl.upmc.fr/~tropflux/papers/TropFlux_paper_accepted_r.pdf>`_
-
-.. [LiebmannSmith:BAMS:1996] Liebmann B. and C.A. Smith, 1996: Description of a Complete (Interpolated) Outgoing Longwave Radiation Dataset. Bulletin of the American Meteorological Society, 77, 1275-1277. `OLRinterpolated.pdf <http://www.esrl.noaa.gov/psd/data/gridded/OLRinterpolated.pdf>`_
-
-.. [McPhadenBusalacchiEtAL:JGR:1998] McPhaden, M.J., A.J. Busalacchi, R. Cheney, J.R. Donguy, K.S. Gage, D. Halpern, M. Ji, P. Julian, G. Meyers, G.T. Mitchum, P.P. Niiler, J. Picaut, R.W. Reynolds, N. Smith, K. Takeuchi, 1998: The Tropical Ocean-Global Atmosphere (TOGA) observing system: A decade of progress. J. Geophys. Res., 103, 14, 169-14,240.
-
-.. [BourlesLumpkinEtAL:BAMS:2008] Bourles, B., R. Lumpkin, M.J. McPhaden, F. Hernandez, P. Nobre, E.Campos, L. Yu, S. Planton, A. Busalacchi, A. D. Moura, J. Servain, and J. Trotte, 2008: The PIRATA Program: History, Accomplishments, and Future Directions. Bull. Amer. Meteor. Soc., 89, 1111-1125.
-
-.. [McPhadenMeyersEtAl:BAMS:2009] McPhaden, M. J., G. Meyers, K. Ando,Y. Masumoto, V. S. N. Murty, M. Ravichandran, F. Syamsudin, J. Vialard, L. Yu, and W. Yu, 2009: RAMA: The Research Moored Array for African-Asian-Australian Monsoon Analysis and Prediction. Bull. Am. Meteorol. Soc., 90, 459-480, `doi:10.1175/2008BAMS2608.1 <http://dx.doi.org/10.1175/2008BAMS2608.1>`_
-
-.. [JayakumarVialardEtAl:CD:2011] Jayakumar, A., J. Vialard, M. Lengaigne, C. Gnanseelan, J. P. McCreary and Praveen Kumar B. 2011 : Processes controlling the surface temperature signature of the Madden-Julian Oscillation in the thermocline ridge of the Indian Ocean, Clim. Dyn., 37(11-12), 2217-2234, `doi:10.1007/s00382-010-0953-5 <http://dx.doi.org/10.1007/s00382-010-0953-5>`_
-
-.. [VialardJayakumarEtAL:CD:2012] Vialard, J., A. Jayakumar, C. Gnanaseelan, M. Lengaigne, D. Sengupta, B.N. Goswami, 2012: Processes of 30-90 day sea surface temperature variability in the Northern Indian Ocean during boreal summer, Clim. Dynamics, 38(9-10), 1901-1916, `doi:10.1007/s00382-011-1015-3 <http://dx.doi.org/10.1007/s00382-011-1015-3>`_
-
-.. [FoltzVialardEtAl:JC:2010] Foltz, G. R., J. Vialard, Praveen Kumar B. and M. J. McPhaden, 2010 : Seasonal mixed layer heat balance of the southwestern tropical Indian Ocean, J. Clim., 23, 947-965.
-
-
-.. [FoltzMcPhadenEtAL:JC:2011] Foltz. G. R., M. J. McPhaden and R. Lumpkin, 2011:  A strong Atlantic Meridional Mode event in 2009: The role of mixed layer dynamics, J. Clim., `doi:10.1175/JCLI-D-11-00150.1 <http://dx.doi.org/10.1175/JCLI-D-11-00150.1>`_
-
-.. [DrushkaSprintallEtAL:JC:2011] Drushka K., J. Sprintall, S. T. Gille and Susan Wijffels, 2011:  In-situ observations of Madden-Julian Oscillation mixed layer dynamics in the Indian and Western Pacific Oceans, J. Clim., `doi:10.1175/JCLI-D-11-00203.1 <http://dx.doi.org/10.1175/JCLI-D-11-00203.1>`_
-
Index: unk/adm/website/conf.py
===================================================================
--- /trunk/adm/website/conf.py	(revision 204)
+++ 	(revision )
@@ -1,289 +1,0 @@
-# -*- coding: iso-latin-1 -*-
-#
-# DESCRIPTION
-# ===========
-#
-# tropflux documentation build configuration file, created by
-# sphinx-quickstart on Wed Mar 30 14:42:18 2011.
-#
-# TODO
-# ====
-#
-# - fplod 20120229
-#
-#   * exclude README.rst see :`updatedata`
-#
-# - fplod 20110407T092856Z aedon.locean-ipsl.upmc.fr (Darwin)
-#
-#   * improve latex document (ugly now !)
-#
-# - fplod 20110330T142745Z aedon.locean-ipsl.upmc.fr (Darwin)
-#
-#   * add path for matplotlib extension of sphinx f(python installation)
-#
-# EVOLUTIONS
-# ==========
-#
-# $Id$
-#
-# $URL$
-#
-# - fplod 20130716T112452Z cratos.locean-ipsl.upmc.fr (Linux)
-#
-#   * remove inheritance_diagram not needed here and trouble with Sphinx 1.2b1
-#
-# - fplod 20120223
-#
-#   * fix syntax error for exclude prolog.rst
-#
-# - fplod 20120222
-#
-#   * typo for exclusion of prolog.rst
-#   * change PDF and HTML title (no more version)
-#   * add rst_prolog
-#     thanks to https://github.com/leaflabs/leaflabs-docs/blob/master/source/conf.py
-#
-# - fplod 20120221
-#
-#   * add authors
-#     thanks to http://www.fileformat.info/info/unicode/char/search.htm
-#     for utf encoding
-#
-# - fplod 20120220
-#
-#   * remove index generation (so no more index in the sidebar of HTML pages)
-#
-# - fplod 20120219
-#
-#   * chgt release
-#
-# - fplod 20110623T164817Z aedon.locean-ipsl.upmc.fr (Darwin)
-#
-#   * chgt release
-#
-# - fplod 20110622T135106Z aedon.locean-ipsl.upmc.fr (Darwin)
-#
-#   * remove source link
-#
-# - fplod 20110330T124501Z aedon.locean-ipsl.upmc.fr (Darwin)
-#
-#   * sphinx-quickstart 1.0.7
-#   * see http://matplotlib.sourceforge.net/sampledoc/
-#
-# This file is execfile()d with the current directory set to its containing dir.
-#
-# Note that not all possible configuration values are present in this
-# autogenerated file.
-#
-# All configuration values have a default; values that are commented out
-# serve to show the default.
-
-import sys, os
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#sys.path.insert(0, os.path.abspath('.'))
-sys.path.append(os.path.abspath('sphinxext'))
-#
-# -- General configuration -----------------------------------------------------
-
-# If your documentation needs a minimal Sphinx version, state it here.
-#needs_sphinx = '1.0'
-
-# Add any Sphinx extension module names here, as strings. They can be extensions
-# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
-extensions = ['sphinx.ext.autodoc',
-              'sphinx.ext.doctest',
-              'sphinx.ext.intersphinx',
-              'sphinx.ext.todo',
-              'sphinx.ext.coverage',
-              'sphinx.ext.pngmath',
-              'sphinx.ext.ifconfig',
-              'sphinx.ext.viewcode',
-          'ipython_console_highlighting',
-          'numpydoc']
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# The suffix of source filenames.
-source_suffix = '.rst'
-
-# The encoding of source files.
-source_encoding = 'iso-8859-15'
-
-# The master toctree document.
-master_doc = 'index'
-
-# General information about the project.
-project = u'TropFlux'
-copyright = u'2011, IRD'
-
-# The version info for the project you're documenting, acts as replacement for
-# |version| and |release|, also used in various other places throughout the
-# built documents.
-#
-# The short X.Y version.
-version = '0.1.0'
-# The full version, including alpha/beta/rc tags.
-release = '1.0.0'
-
-# The language for content autogenerated by Sphinx. Refer to documentation
-# for a list of supported languages.
-#language = None
-
-# There are two options for replacing |today|: either, you set today to some
-# non-false value, then it is used:
-#today = ''
-# Else, today_fmt is used as the format for a strftime call.
-#today_fmt = '%B %d, %Y'
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-exclude_patterns = ['_build', 'prolog.rst', 'README.rst']
-
-# Included at the beginning of every source file that is read.
-with open('prolog.rst', 'r') as pr:
-    rst_prolog = pr.read()
-
-# The reST default role (used for this markup: `text`) to use for all documents.
-#default_role = None
-
-# If true, '()' will be appended to :func: etc. cross-reference text.
-#add_function_parentheses = True
-
-# If true, the current module name will be prepended to all description
-# unit titles (such as .. function::).
-#add_module_names = True
-
-# If true, sectionauthor and moduleauthor directives will be shown in the
-# output. They are ignored by default.
-#show_authors = False
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
-
-# A list of ignored prefixes for module index sorting.
-#modindex_common_prefix = []
-
-
-# -- Options for HTML output ---------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-html_theme = 'sphinxdoc'
-
-# Theme options are theme-specific and customize the look and feel of a theme
-# further.  For a list of options available for each theme, see the
-# documentation.
-#html_theme_options = {}
-
-# Add any paths that contain custom themes here, relative to this directory.
-#html_theme_path = []
-
-# The name for this set of Sphinx documents.  If None, it defaults to
-# "<project> v<release> documentation".
-html_title = project + ' : air-sea fluxes for the global tropical oceans'
-
-# A shorter title for the navigation bar.  Default is the same as html_title.
-html_short_title = project
-
-# The name of an image file (relative to this directory) to place at the top
-# of the sidebar.
-html_logo = None
-
-# The name of an image file (within the static path) to use as favicon of the
-# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
-# pixels large.
-html_favicon = None
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
-
-# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
-# using the given strftime format.
-#html_last_updated_fmt = '%b %d, %Y'
-
-# If true, SmartyPants will be used to convert quotes and dashes to
-# typographically correct entities.
-#html_use_smartypants = True
-
-# Custom sidebar templates, maps document names to template names.
-#html_sidebars = {}
-
-# Additional templates that should be rendered to pages, maps page names to
-# template names.
-#html_additional_pages = {'index': 'index.html'}
-
-# If false, no module index is generated.
-#html_domain_indices = True
-
-# If false, no index is generated.
-html_use_index = False
-
-# If true, the index is split into individual pages for each letter.
-#html_split_index = False
-
-# If true, links to the reST sources are added to the pages.
-html_show_sourcelink = False
-
-# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
-#html_show_sphinx = True
-
-# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
-html_show_copyright = False
-
-# If true, an OpenSearch description file will be output, and all pages will
-# contain a <link> tag referring to it.  The value of this option must be the
-# base URL from which the finished HTML is served.
-#html_use_opensearch = ''
-
-# This is the file name suffix for HTML files (e.g. ".xhtml").
-#html_file_suffix = None
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = 'tropfluxdoc'
-
-
-# -- Options for LaTeX output --------------------------------------------------
-
-# The paper size ('letter' or 'a4').
-latex_paper_size = 'a4'
-
-# The font size ('10pt', '11pt' or '12pt').
-#latex_font_size = '10pt'
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title, author, documentclass [howto/manual]).
-latex_documents = [
-('index', 'tropflux.tex', u'TropFlux : air-sea fluxes for the global tropical oceans', u'J\u00E9r\u00F4me Vialard, B. Praveen Kumar, Fran\u00E7oise Pinsard', 'howto'),
-]
-
-# The name of an image file (relative to this directory) to place at the top of
-# the title page.
-#latex_logo = None
-
-# For "manual" documents, if this is true, then toplevel headings are parts,
-# not chapters.
-#latex_use_parts = False
-
-# If true, show page references after internal links.
-latex_show_pagerefs = True
-
-# If true, show URL addresses after external links.
-latex_show_urls = True
-
-# Additional stuff for the LaTeX preamble.
-#latex_preamble = ''
-
-# Documents to append as an appendix to all manuals.
-#latex_appendices = []
-
-# If false, no module index is generated.
-#latex_domain_indices = True
-
-# Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {'http://docs.python.org/': None}
Index: unk/adm/website/contact.rst
===================================================================
--- /trunk/adm/website/contact.rst	(revision 204)
+++ 	(revision )
@@ -1,42 +1,0 @@
-.. +
-..
-..
-.. TODO
-.. ====
-..
-.. learn to use :fieldname: nocomments
-.. cf. http://sphinx.pocoo.org/markup/misc.html?highlight=comment
-.. to avoid seeing snippets of this header on search results page.
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20110701T083238Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * contact = tropflux@locean-ipsl.upmc.fr
-..
-.. - fplod 20110623T152527Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation from JV text (email)
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _contact:
-
-Contact
-=======
-
-For any scientific queries or issues regarding TropFlux data,
-please contact us using the following
-mailing list (mailto:tropflux@locean-ipsl.upmc.fr).
Index: unk/adm/website/data/changes.rst
===================================================================
--- /trunk/adm/website/data/changes.rst	(revision 204)
+++ 	(revision )
@@ -1,144 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. changes on dataset
-..
-.. SEE ALSO
-.. ========
-..
-.. :ref:`data_access`
-..
-.. TODO
-.. ====
-..
-.. use citation [PraveenkumarVialardEtAl:CD:2011]
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20130725T150201Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * introducing update until March 2013 included
-..
-.. - fplod 20130725T131036Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * wind stresses paper published (submitted in 2012 but published in 2013)
-..
-.. - fplod 20121221T174433Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * introducing update until July 2012 included
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20120223
-..
-..   * typo
-..
-.. - fplod 20120222
-..
-..   * links and associated text are now defined in :ref:`prolog.rst`
-..
-.. - fplod 20120221
-..
-..   * add description and todo
-..   * moved in data/ to prevent sphinx for telling:
-..
-..     .. parsed-literal::
-..
-..        changes.rst : WARNING: document isn't included in any toctree`
-..
-..     and missing section in PDF
-..
-.. - fplod 20120209
-..
-..   * add v1 with text from email of jv 20120131
-..   * introduce v0
-..
-.. - fplod 20110817T144644Z cratos (Linux)
-..
-..   * typo
-..
-.. - fplod 20110817T090621Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add 20110817
-..
-.. - fplod 20110812T121708Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _changes:
-
-Changes
-=======
-
-Following information are provided to emphasise modification that may
-may have impacts on tools using TropFlux products.
-
-version 1 (v1)
-++++++++++++++
-
-.. _20130725:
-
-20130725
-~~~~~~~~
-
-Data updated until March 2013 included
-
-.. _20121227:
-
-20121227
-~~~~~~~~
-
-Data updated until July 2012 included
-
-.. _20120209:
-
-20120209
-~~~~~~~~
-
-We have now released a version 1 of the TropFLux product.
-In comparison with the version 0 (described in |pkbetal2012|_), this new version has the following differences:
-
- - the availability of ERA-I data over the full 1979 to september 2011 period allowed us to provide v1 for this period (v0 was for 1989-2010)
- - v1 now includes estimates for wind stresses, which are described and evaluated in |pkbetal2013|_)
-
- - the retrieval method for radiative fluxes has slightly changed (0-24 hour averages whereas the previous version was based on 24-48h averages from the previous day forecast). This has a very minor impact on the validation statistics and all the validations presented in |pkbetal2012|_ are almost unchanged.
-
- - the value for land points in v0 was causing problem when opening the file under ferret. v1 seems to solve this problem.
-
-version 0 (v0)
-++++++++++++++
-
-.. _20110817:
-
-20110817
-~~~~~~~~
-
-  - correction of :file:`ws_tropflux_1m_1989_2010.nc` and
-    :file:`ws_tropflux_1d_1989_2010.nc` due to inappropriate unit conversion
-
-.. _20110707:
-
-20110707
-~~~~~~~~
-
- - reprocessing from 1989 to 2010
- - new terminology :file:`{var}_tropflux_1d_{yyyy}_{yyyy}.nc`
- - new location of daily files :file:`daily/`
- - only one field/file
- - add monthly time scale in :file:`monthly`
- - :math:`°C` instead of K for temperature units
-
Index: unk/adm/website/data/data_out_website.rst
===================================================================
--- /trunk/adm/website/data/data_out_website.rst	(revision 204)
+++ 	(revision )
@@ -1,142 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. files organization and contents
-..
-.. SEE ALSO
-.. ========
-..
-.. :ref:`data_access`
-..
-.. TODO
-.. ====
-..
-.. as Praveen ask for link to directories instead of links on files
-.. we should add some readme in http://www.locean-ipsl.upmc.fr/~tropflux/data/*
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20120222
-..
-..   * links and associated text are now defined in :ref:`prolog.rst`
-..
-.. - fplod 20120221
-..
-..   * add description
-..   * moved in data/ to prevent sphinx for telling::
-..
-..       WARNING: document isn't included in any toctree`
-..
-..     and missing section in PDF
-..
-.. - fplod 20120208
-..
-..   * add new fields definition netflux, tau, taux and tauy
-..   * update size/file
-..
-.. - fplod 20110812T122746Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * use math for units
-..   * add ref to changes
-..
-.. - fplod 20110708T121409Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * units of air temperature and sst are in degree Celsius instead of Kelvin
-..
-.. - fplod 20110707T130407Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * new dataset : monthly/daily, only one variable/file, time coverage
-..     1989-2010, ws variable.
-..
-.. - fplod 20110622T075512Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * rename from data_out.rst to data_out_website.rst
-..     to avoid confusion with adm/guides/data_out.rst
-..   * no more password is needed to access to data
-..   * replace https://www.locean-ipsl.upmc.fr/~jv/data/
-..     by http://www.locean-ipsl.upmc.fr/~tropflux/data/.
-..
-.. - fplod 20110406T104129Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation from data_contents.rst to isolated outputs
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _data_out_user:
-
-TropFlux products
------------------
-
-Data Policy
-~~~~~~~~~~~
-
-See :ref:`data_access`.
-
-Data Files
-~~~~~~~~~~
-
-TropFlux fluxes and flux related meteorological variables are available in
-daily and monthly time scales and are available from the following directories :
-
- - <http://www.locean-ipsl.upmc.fr/~tropflux/data/monthly/>
- - <http://www.locean-ipsl.upmc.fr/~tropflux/data/daily/>
-
-Size of daily files : almost 1GB
-
-Size of monthly files : 32 MB
-
-* :file:`q2m*.nc` file contain TropFlux specific humidity at 2m above the sea surface.
-
-  Units are in :math:`g/kg`.
-
-* :file:`t2m*.nc` files contain TropFlux air temperature at 2m above the sea surface.
-
-  Units are in :math:`°C`.
-
-* :file:`sst*.nc` files contain TropFlux sea surface temperature.
-
-  Units are in :math:`°C`.
-
-* :file:`ws*.nc` files contain TropFlux wind speed at 10m above the sea surface.
-  The `gustiness` correction applied to wind speed for turbulent heat flux
-  computations (see |pkbetal2012|_ for details) is not applied in this file.
-
-  Units are in :math:`m/s`.
-
-* :file:`swr*.nc` files contain TropFlux net shortwave radiation at the sea surface.
-
-* :file:`lwr*.nc` files contain TropFlux net longwave radiation at the sea surface.
-
-* :file:`lhf*.nc` files contain TropFlux latent heat flux.
-
-* :file:`shf*.nc` files contain TropFlux sensible heat flux.
-
-* :file:`netflux*.nc` files contain TropFlux net surface heat flux.
-
-  Units are in :math:`W/m^2`.
-
-* :file:`tau*.nc` files contain TropFlux wind stress magnitude.
-
-* :file:`taux*.nc` files contain TropFlux zonal wind stress.
-
-* :file:`tauy*.nc` files contain TropFlux meridional wind stress.
-
-  Units are in :math:`N/m^2`.
-
-
-Refer to :ref:`changes`
-
Index: unk/adm/website/data_access.rst
===================================================================
--- /trunk/adm/website/data_access.rst	(revision 204)
+++ 	(revision )
@@ -1,122 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. first level of data information
-..
-.. SEE ALSO
-.. ========
-..
-.. :ref:`changes`
-.. :ref:`data_out_website`
-..
-.. TODO
-.. ====
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20130726T175139Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * introducing update until March 2013 included
-..
-.. - fplod 20130725T131417Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * wind stresses paper published (submitted in 2012 but published in 2013)
-..
-.. - fplod 20121221T174433Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * introducing update until july 2012 included
-..
-.. - jv 20120229
-..
-..   * add LOCEAN in acknowledgement sentence
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20120223
-..
-..   * typo + split long lines
-..
-.. - fplod 20120222
-..
-..   * links and associated text are now defined in :ref:`prolog.rst`
-..
-.. - jv 20120222
-..
-..   * add the Praveen Kumar et al. (submitted) reference
-..
-.. - fplod 20120221
-..
-..   * insert as a sublevel sections changes and data_out_website
-..   * replace "here" links because not ok for WAI and PDF output
-..
-.. - fplod 20120219
-..
-..   * small text changes asked by jv 20120217
-..
-.. - fplod 20120209
-..
-..   * replace 1989 by 1979 and 2010, by sept 2011
-..
-.. - fplod 20110812T122549Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add link to changes
-..
-.. - fplod 20110701T134759Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add mailing list
-..
-.. - fplod 20110623T152527Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation from JV text (email)
-..   * make paragraphs
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _data_access:
-
-Data access
-===========
-
-TropFlux data is freely available for research and education purposes.
-
-See in :ref:`data_out_user` for access surface heat and momentum flux
-data over the January 1979 to March 2013 period.
-
-See in :ref:`changes` for information about changes with respect to the
-previous version of the data.
-
-The data is in NetCDF format.
-
-Please provide us (mailto:tropflux@locean-ipsl.upmc.fr) your name, institute,
-contact e-mail and a short sentence on how you plan to use the data.
-
-Please cite |pkbetal2012|_ in any publication using the heat flux data and
-|pkbetal2013|_ in any paper using the wind stress data.
-Please acknowledge us by using the following sentence:
-**The TropFlux data is produced under a collaboration between
-Laboratoire d'OcÃ©anographie: ExpÃ©rimentation et Approches NumÃ©riques (LOCEAN) from
-Institut Pierre Simon Laplace (IPSL, Paris, France) and
-National Institute of Oceanography/CSIR (NIO, Goa, India), and
-supported by Institut de Recherche pour le DÃ©veloppement (IRD, France).
-TropFlux relies on data provided by the ECMWF Re-Analysis interim (ERA-I)
-and ISCCP projects.**
-
-Please keep us informed of any published paper that makes use of this data.
-
-.. toctree::
-   :hidden:
-
-   data/data_out_website
-   data/changes
Index: unk/adm/website/description.rst
===================================================================
--- /trunk/adm/website/description.rst	(revision 204)
+++ 	(revision )
@@ -1,98 +1,0 @@
-.. +
-..
-..
-.. DESCRIPTION
-.. ===========
-..
-.. description
-..
-.. TODO
-.. ====
-..
-.. (July 1983 to December 2009 at the time of writing), ... not any more true
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20120222
-..
-..   * links and associated text are now defined in :ref:`prolog.rst`
-..
-.. - jv 20120222
-..
-..   * typos
-..
-.. - fplod 20120219
-..
-..   * fix links, add bold
-..
-.. - fplod 20120217
-..
-..   * creation from description.odt
-..     transform to ReStructuredText using odt2sphinx + hand correction
-..     (diacritical, punctuations, short lines, links !!)
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _description:
-
-Description
-===========
-
-How are TropFlux fluxes estimated ?
-+++++++++++++++++++++++++++++++++++
-
-  * **The TropFlux heat and momentum fluxes are estimated from the COARE v3
-    algorithm** (`Fairall et al. 2003 <http://dx.doi.org/10.1175/1520-0442(2003)016%3C0571:BPOASF%3E2.0.CO;2>`_),
-    arguably one of the most suited algorithm for fluxes estimations in the
-    tropical regions.
-    This algorithm requests surface meteorological parameters (10m-winds,
-    2m-air and sea temperature, 2m-air relative humidity) and downward
-    radiative (shortwave and infrared fluxes) as input parameters.
-
-  * The analysis of various data sources shows that, except for shortwave
-    radiation, ERA-I data generally displays the best agreement to the
-    |gtma|_
-    data, despite systematic biases and underestimated variability
-    |pkbetal2012|_.
-    The |isccpbrowse|_ provides the best shortwave data.
-    **TropFlux hence uses bias and amplitude corrected ERA-I (10m-winds, 2m-air
-    and sea temperature, 2m-air relative humidity and downward radiative
-    fluxes) and ISCCP (shortwave radiation) fluxes.**
-    All bias corrections are derived on the basis of comparisons with
-    the
-    |gtma|_
-    data, and are described in detail in
-    |pkbetal2012|_.
-
-  * **An additional climatological surface temperature-dependent gustiness
-    is applied to wind speed, in order to account for unresolved (sub-daily
-    and subgrid-scale) variability.**
-
-  * Since ISCCP shortwave data
-    is not updated on a regular basis, we provide an alternative shortwave
-    flux estimate that is less accurate, but available until present.
-    This estimate uses the ISCCP shortwave climatology plus anomalies that are
-    linearly related to |noaaolr|_ the anomalies with respect to the seasonal cycle.
-    Such an estimate is almost as good as ISCCP in deep atmospheric convection
-    regions such as the ITCZ or Indo-Pacific warm pool.
-    It does not perform as well as ISCCP in regions of low clouds such as the
-    eastern equatorial Pacific and Atlantic oceans, but is in any case better
-    than most available re-analyses in those regions
-    (|pkbetal2012|_).
-    The net surface shortwave that is provided in TropFlux data files is based
-    on ISCCP data over the entire period for which it is available (July 1983
-    to December 2009 at the time of writing), with a linear transition to
-    OLR-derived shortwave over a three months window at the edges of the
-    ISCCP-availability window.
Index: unk/adm/website/documentation.rst
===================================================================
--- /trunk/adm/website/documentation.rst	(revision 204)
+++ 	(revision )
@@ -1,70 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. papers which describe TropFlux dataset
-..
-.. SEE ALSO
-.. ========
-..
-.. publication, bibliography
-..
-.. TODO
-.. ====
-..
-.. link with gen_bib
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20130725T124235Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * wind stresses paper published (submitted in 2012 but published in 2013)
-..   * CLIVAR 58 published
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-..  - jv 20120222
-..
-..   * consistent citation format for Praveen Kumar et al. (2011)
-..
-.. - fplod 20120219
-..
-..   * add PraveenkumarVialardEtAl:CD:2012 and PraveenkumarVialardEtAl:CE:2012
-..
-.. - fplod 20110623T152527Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation from JV text (email)
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _documentation:
-
-Documentation
-=============
-
-The following papers present the TropFlux data :
-
- - Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden, 2012: *TropFlux: Air-Sea Fluxes for the Global Tropical Oceans - Description and evaluation*, Climate Dynamics, 38, 1521-1543, `doi:10.1007/s00382-011-1115-0 <http://dx.doi.org/10.1007/s00382-011-1115-0>`_, `TropFlux_paper_accepted_r.pdf <http://www.locean-ipsl.upmc.fr/~tropflux/papers/TropFlux_paper_accepted_r.pdf>`_
-
- - Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden,
-   M.F. Cronin and K. Gopala Reddy, 2012: *Evaluation of Air-sea heat and
-   momentum fluxes for the tropical oceans and introduction of TropFlux*,
-   CLIVAR exchanges, Issue 58, February 2012,
-   `tropflux_clivar_final_acc.pdf <http://www.locean-ipsl.upmc.fr/~tropflux/papers/tropflux_clivar_final_acc.pdf>`_
-
- - Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden,
-   M.F. Cronin and F. Pinsard and K. Gopala Reddy, 2013: *TropFlux wind
-   stresses over the tropical oceans: evaluation and comparison with other
-   products*, Climate Dynamics , 40(7-8), 2049-2071, `doi:10.1007/s00382-012-1455-4 <http://dx.doi.org/10.1007/s00382-012-1455-4>`_,
-   `tropflux_stress_submitted_r.pdf <http://www.locean-ipsl.upmc.fr/~tropflux/papers/tropflux_stress_submitted_r.pdf>`_
Index: /trunk/adm/website/index.rst
===================================================================
--- /trunk/adm/website/index.rst	(revision 204)
+++ /trunk/adm/website/index.rst	(revision 205)
@@ -9,7 +9,4 @@
 .. ====
 ..
-.. solve overview and index confusion : end-user should first see overview
-.. (asked by jv)
-..
 .. EVOLUTIONS
 .. ==========
@@ -18,4 +15,8 @@
 ..
 .. $URL$
+..
+.. - fplod 20140326T114146Z callisto.locean-ipsl.upmc.fr (Linux)
+..
+..   * only one page : cf. incois
 ..
 .. - fplod 20120229
@@ -52,20 +53,38 @@
 
 .. meta::
-   :robots: noindex,nofollow,noarchive
+   :robots: noindex, nofollow, noarchive
 
-.. _contents:
+.. image:: _static/stress_netflux_clim_1989_2010_v4_jv.jpg
+   :align: center
+   :width: 90%
+   :alt: tropflux banner
 
-TropFlux documentation contents
-===============================
+.. image:: _static/sponso_IRD.jpg
+   :align: left
+   :target: http://www.ird.fr/">
+   :alt: IRD logo
+   :width: 10%
+.. image:: _static/nio_logo.jpg
+   :target: http://www.nio.org/">
+   :alt: NIO logo
+   :width: 10%
+.. image:: _static/incois_logo.jpg
+   :target: http://www.incois.gov.in/">
+   :alt: INCOIS logo
+   :width: 10%
+.. image:: _static/sponso_locean.jpg
+   :target: http://www.locean-ipsl.upmc.fr">
+   :alt: LOCEAN logo
+   :width: 10%
+.. image:: _static/sponso_simon.jpg
+   :target: http://www.ipsl.fr">
+   :alt: IPSL logo
+   :width: 10%
 
-.. toctree::
-   :maxdepth: 1
+.. warning::
 
-   overview
-   motivation
-   description
-   selected_results
-   data_access
-   documentation
-   publications
-   contact
+   The TropFlux product is now produced at INCOIS (link to http://www.incois.gov.in ) and
+   the TropFlux website has been migrated to the following address:
+   http://www.incois.gov.in/tropflux
+
+   Data, updates and information about this product can hence be found at the link above.
Index: unk/adm/website/motivation.rst
===================================================================
--- /trunk/adm/website/motivation.rst	(revision 204)
+++ 	(revision )
@@ -1,146 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. motivation
-..
-.. TODO
-.. ====
-..
-.. bold is implemented with either ** .. ** and :strong:`..`, but with none
-.. of these way I manage to mix text and hyperlink
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20130102T090053Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * remove new refs (move in publications.rst)
-..
-.. - fplod 20121227T174453Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * add new refs (sort with lastname of the first author)
-..   * add doi to McPhadenEtAL:JC:2010
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - jv 20120222
-..
-..   * typos
-..
-.. - jv 20120221
-..
-..   * add full references and doi links when available
-..
-..
-.. - fplod 20120219
-..
-..   * fix links
-..   * add section level
-..   * add bold texts
-..
-.. - fplod 20120217
-..
-..   * creation from motivation.odt
-..     transform to ReStructuredText using odt2sphinx + hand correction 
-..     (diacritical, punctuations, short lines, links !!)
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _motivation:
-
-Motivation
-==========
-
-Importance of air-sea fluxes in the tropics
-+++++++++++++++++++++++++++++++++++++++++++
-
-The tropics play an important role in the earth's climate and energy cycle.
-The tropical oceans gain heat from downward shortwave radiation, allowing for
-very high surface temperature (above 28Â°C) in the Indo-Pacific and
-Atlantic warm pools.
-This high sea surface temperature can cause the atmospheric boundary layer to
-destabilize through upward latent and sensible fluxes and by providing
-moisture through evaporation, leading to the development of deep atmospheric
-convection.
-These air-sea interactions are crucial in setting up the Walker circulation,
-an essential component of the earth climate.
-These interactions are also active through a continuum of time scales, from
-diurnal to interannual, and are involved in many tropical climate modes.
-At the intraseasonal timescale, for example, air-sea heat fluxes play a
-central role in theories of the Madden and Julian Oscillation, and in the
-monsoon active and break phases (Sobel et al. 2008).
-At the interannual timescale, air-sea momentum fluxes play a key role in the
-Bjerknes feedback, a positive feedback between the surface wind signal related
-to deep atmospheric convection and its dynamical oceanic response, which is
-critical to phenomena like El NiÃ±o (e.g. McPhaden et al. 2006) and the Indian
-Ocean Dipole (Webster et al. 1999; Saji et al. 1999).
-Those examples illustrate how an accurate knowledge of air-sea heat and
-momentum fluxes is required to understand the main modes of tropical climate
-variability.
-**The TropFlux project aims at providing state of the art heat and momentum
-fluxes that resolve the main phenomena of the tropical climate, at
-intraseasonal (Madden-Julian Oscillation, monsoon active and break phases),
-seasonal and interannual (El NiÃ±o, Indian Ocean Dipole ...) time scales.**
-
-
-Why a new air-sea flux product?
-+++++++++++++++++++++++++++++++
-
-  * Air-sea fluxes derived from in situ observations are extremely useful
-    for establishing reference climatologies, but do not allow resolving
-    intraseasonal variations due to limited data coverage
-
-
-  * Air-sea fluxes obtained from re-analyses generally suffer from systematic
-    biases, and do not perform extremely well for surface shortwave
-    fluxes (|pkbetal2012|_)
-
-  * The |oaflux|_ project is a very useful initiative that delivers high-quality surface heat
-    fluxes from a synthesis of various re-analyses, satellite observations
-    and in situ datasets. Unfortunately, OAFlux does not provide momentum
-    fluxes so-far, and the availability of its net heat fluxes is conditioned
-    by the availability of high quality
-    |isccp|_ shortwave surface fluxes,
-    which are only updated once every year or so.
-
-:strong:`The TropFlux project aims at providing timely (i.e. a few months behind
-present) estimates of both momentum and net heat flux (and their components).
-These fluxes should compare well to the largest observational database of
-estimates of air-sea fluxes in the tropics:`
-|gtma|_
-:strong:`(McPhaden et al. 2010).`
-
-
-References
-++++++++++
-
-.. [McPhadenEtAL:Science:2006]_
-
-McPhaden, M.J.,S. E. Zebiak, and, M.H. Glantz, 2006: *ENSO as an integrating concept in Earth science*, Science, `doi:10.1126/science.1132588 <http://dx.doi.org/10.1126/science.1132588>`_
-
-.. [McPhadenEtAL:JC:2010]_
-
-McPhaden, M.J., K. Ando, B. Bourles H.P. Freitag, R. Lumpkin, Y. Masumoto, V.S.N. Murty, P. Nobre, M. Ravichandran, J. Vialard, D. Vousden, and W. Yu, 2010: *The global tropical moored buoy array*, In Proceedings of the "OceanObs'09: Sustained Ocean Observations and Information for Society" Conference (Vol. 2), Venice, Italy, 21-25 September 2009, Hall, J., D.E. Harrison, and D. Stammer, Eds., ESA Publication WPP-306, `doi:10.5270/OceanObs09.cwp.61 <http://dx.doi.org/10.5270/OceanObs09.cwp.61>`_.
-
-.. [SajiEtAl:Nature:1999]_
-
-Saji NH, Goswami BN, Vinayachandran PN, Yamagata T, 1999: *A dipole mode in the tropical Indian Ocean*, Nature, `doi:10.1038/43855 <http://dx.doi.org/10.1038/43855>`_
-
-.. [SobelEtAl:NatureGeo:2008]_
-
-Sobel, A.H., E.D. Maloney, G. Bellon and D.M. Frierson, 2008: *The role of surface fluxes in tropical intraseasonal oscillations*, Nature Geo., `doi:10.1038/ngeo312 <http://dx.doi.org/10.1038/ngeo312>`_
-
-.. [WebsterEtAl:NatureGeo:2008]_
-
-Webster, P. J., Moore, A. M, Loschnigg, J. P, and Leben, R. R, 1999: *Coupled oceanic-atmospheric dynamics in the Indian Ocean during 1997-98*, Nature, `doi:10.1038/43848 <http://dx.doi.org/10.1038/43848>`_
Index: unk/adm/website/overview.rst
===================================================================
--- /trunk/adm/website/overview.rst	(revision 204)
+++ 	(revision )
@@ -1,115 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. overview
-..
-.. TODO
-.. ====
-..
-.. outline overview vs home/index
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20121221T174433Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * introducing update until July 2012 included
-..
-..
-.. - jv 20120229
-..
-..   * Mention LOCEAN in last sentence
-..
-.. - fplod 20120223
-..
-..   * typo
-..
-.. - fplod 20120222
-..
-..   * links and associated text are now defined in :ref:`prolog.rst`
-..
-.. - jv 20120222
-..
-..   * correct a few typos
-..
-..
-.. - jv    20120221
-..
-..   * correct a few typos
-..
-.. - fplod 20120219
-..
-..   * modif according to overview.odt provided by jv
-..   * cut long lines
-..
-..
-.. - fplod 20120208
-..
-..   * replace 1989 by 1979 and 2010, by sept 2011
-..
-.. - fplod 20110623T160124Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add JV text
-..
-.. - fplod 20110407T083446Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation (draft) from networkx/networkx/doc/source/overview
-..
-.. -
-
-.. _overview:
-
-Overview
-========
-
-The TropFlux project aims at providing daily, timely, accurate air-sea heat
-and momentum flux data for the entire 30Â°N-30Â°S region.
-
-Wind stresses and the four components of net surface heat flux are currently
-available for the entire 1979 to March 2013 period.
-We are currently working on a regular (~monthly) update of the
-TropFlux product until 3-4 months behind realtime.
-
-TropFlux is largely derived from a combination of
-|erai|_
-re-analysis data for turbulent and longwave fluxes, and
-|isccp|_
-surface radiation data for shortwave flux.
-All input products are bias- and amplitude-corrected on the basis of
-|gtma|_
-data, before surface net heat flux and wind stresses are computed using the
-|coare|_.
-A precise description of the flux computation procedure, as well as a
-detailed evaluation against other timely, daily air-sea heat flux
-alternatives (OAFLUX, NCEP, NCEP2, ERA-I) is provided in
-|pkbetal2012|_.
-The wind stress product is described, evaluated and compared against other
-widely used products (QuikSCAT, NCEP, NCEP2, ERA-I) in
-|pkbetal2013|_
-
-We believe that this product offers the following advantages:
-
- - better variability and less biases than re-analysis fluxes (and equivalent
-   or slightly better than the best performing products:
-   |oaflux|_ for heat fluxes and
-   |erai|_
-   for wind stresses) ,
- - available until March 2013, and soon updated every month, lagging
-   realtime by ~3 months,
- - a simple estimate of surface shortwave radiation is provided from OLR
-   data, as a near-realtime alternative to the more accurate but irregularly
-   updated ISCCP data.
-
-The TropFlux product has been developed under a collaboration between the
-`Laboratoire d'OcÃ©anographie: ExpÃ©rimentation et Approches NumÃ©riques (LOCEAN) <http://www.locean-ipsl.upmc.fr/>`_ from
-`Institut Pierre Simon Laplace <http://www.ipsl.fr/>`_, France and
-`National Institute of Oceanography/CSIR <http://www.nio.org/>`_, India.
-Bilateral scientific visits to France and India have been supported by
-`Institut de Recherche pour le DÃ©veloppement <http://www.ird.fr/>`_, France.
-
Index: unk/adm/website/prolog.rst
===================================================================
--- /trunk/adm/website/prolog.rst	(revision 204)
+++ 	(revision )
@@ -1,57 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. definition of links and associated text
-..
-.. SEE ALSO
-.. ========
-..
-.. :ref:`conf.py`
-..
-.. TODO
-.. ====
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20130725T132533Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * wind stresses paper published (submitted in 2012 but published in 2013)
-..
-.. - fplod 20120412
-..
-..   * published paper new year
-..
-.. - fplod 20120222
-..
-..   * creation
-..
-.. -
-
-.. |pkbetal2012| replace:: Praveen Kumar et al. 2012
-.. _pkbetal2012: http://www.locean-ipsl.upmc.fr/~tropflux/papers/TropFlux_paper_accepted_r.pdf
-.. |pkbetal2013| replace:: Praveen Kumar et al. 2013
-.. _pkbetal2013: http://www.locean-ipsl.upmc.fr/~tropflux/papers/tropflux_stress_submitted_r.pdf
-.. |gtma| replace:: Global Tropical Moored Buoy Array
-.. _gtma: http://www.pmel.noaa.gov/tao/global/global.html
-.. |rama| replace:: RAMA
-.. _rama: http://www.pmel.noaa.gov/tao/rama/
-.. |erai| replace:: ERA-I
-.. _erai: http://www.ecmwf.int/research/era/do/get/era-interim
-.. |isccp| replace:: ISCCP
-.. _isccp: http://isccp.giss.nasa.gov/
-.. |coare| replace:: COARE v3 bulk algorithm
-.. _coare: http://www.coaps.fsu.edu/COARE/flux_algor/
-.. |oaflux| replace:: OAFLUX
-.. _oaflux: http://oaflux.whoi.edu/
-.. |isccpbrowse| replace:: ISCCP
-.. _isccpbrowse: http://isccp.giss.nasa.gov/projects/browse_fc.html
-.. |noaaolr| replace:: NOAA Outgoing Longwave Radiation
-.. _noaaolr: http://www.esrl.noaa.gov/psd/data/gridded/data.interp_OLR.html
-
Index: unk/adm/website/publications.rst
===================================================================
--- /trunk/adm/website/publications.rst	(revision 204)
+++ 	(revision )
@@ -1,208 +1,0 @@
-.. +
-..
-..
-.. SEE ALSO
-.. ========
-..
-.. :ref:`bibliography_web.rst`
-.. :ref:`bibliotropflux.xml`
-..
-.. TODO
-.. ====
-..
-.. either look for improvement of citation within docutils or
-.. (favourite option .. in progress) connect sphinx and superbib
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20130725T103434Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * add some 2013 references given by pkb
-..   * wind stresses paper published (submitted in 2012 but published in 2013)
-..   * published works
-..
-.. - fplod 20130102T090053Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * add new refs (were in motivations.rst)
-..
-.. - fplod 20121221T173124Z cratos.locean-ipsl.upmc.fr (Linux)
-..
-..   * sort by year and lastname of the first author
-..
-.. - fplod 20120412T123443Z cratos (Linux)
-..
-..   * replace PraveenkumarVialardEtAl:CD:2011 by
-..     PraveenkumarVialardEtAl:CD:2012 and update
-..
-.. - fplod 20120326
-..
-..   * add RavichandranGirishkumareTAl:DSR:2012online
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20120228
-..
-..   * typo
-..   * add++
-..
-.. - fplod 20120216
-..
-..   * add submitted PraveenkumarVialardEtAl:CD:2012 PDF
-..
-.. - fplod 20120215
-..
-..   * PraveenkumarVialardEtAl:CD:2012 submitted and new co-author
-..
-.. - fplod 20120213
-..
-..   * add temporary clivar PDF
-..
-.. - fplod 20120209
-..
-..   * add clivar in press
-..
-.. - fplod 20120208
-..
-..   * add in prep publication
-..   * add missing DOIs
-..
-.. - fplod 20111021T160012Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * add Foltz2011 and Drushka2011 asked by pkb
-..
-.. - fplod 20110701T152418Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * no more usage references defined in bibliography.rst because
-..     citation are ugly (only [bibkey]). In fact it is not a Sphinx pb but
-..     a docutils's one
-..     Now I copy bibliography.rst !
-..
-.. - fplod 20110623T152527Z aedon.locean-ipsl.upmc.fr (Darwin)
-..
-..   * creation from JV text (email)
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. _publications:
-
-Publications
-============
-
-The following publications use the TropFlux data:
-
-2013
-----
-
-.. [PraveenkumarVialardEtAl:CD:2013]_
-
-Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden, M. F. Cronin, F. Pinsard and K. Gopala Reddy, 2013: *TropFlux wind stresses over the tropical oceans: evaluation and comparison with other products*, Climate Dynamics, 40(7-8), 2049-2071, `doi:10.1007/s00382-012-1455-4 <http://dx.doi.org/10.1007/s00382-012-1455-4>`_, `tropflux_stress_submitted_r.pdf <http://www.locean-ipsl.upmc.fr/~tropflux/papers/tropflux_stress_submitted_r.pdf>`_
-
-.. [KurianEtAl:OD:2013]_
-
-Kurian N., et al., 2013: *Processes of India's offshore summer intraseasonal sea surface temperature variability*, Ocean Dynamics, `doi:10.1007/s10236-013-0604-6 <http://dx.doi.org/10.1007/s10236-013-0604-6>`_
-
-.. [WangDickinsonEtAl:RG:2013]_
-
-Wang K., R. E. Dickinson, 2013: *Global atmospheric downward longwave radiation at the surface from ground-based observations, satellite retrievals, and reanalyses*, Reviews of Geophysics, `doi:10.1002/rog.20009 <http://dx.doi.org/10.1002/rog.20009>`_
-
-.. [RahamanRavichandranEtAl:CD:2013]_
-
-Rahaman H., M. Ravichandran, 2013: *Evaluation of near-surface air temperature and specific humidity from hybrid global products and their impact on latent heat flux in the North Indian Ocean*, Climate Dynamics, `doi:10.1002/jgrc.20085 <http://dx.doi.org/10.1002/jgrc.20085>`_
-
-.. [FeiyanQinyuEtAl:JOUC:2013]_
-
-Feiyan Guo, Qinyu Liu, Xiao-Tong Zheng, Shan Sun, 2013: *The role of barrier layer in southeastern Arabian Sea during the development of positive Indian Ocean Dipole events*, Journal of Ocean University of China, 12, pp 245-252, `doi:10.1007/s11802-013-2170-4 <http://dx.doi.org/10.1007/s11802-013-2170-4>`_
-
-.. [GirishkumarRavichandranEtAl:JGR:2013]_
-
-Girishkumar M. S., M. Ravichandran, M. J. McPhaden, 2013: *Temperature inversions and their influence on the mixed layer heat budget during the winters of 2006-2007 and 2007-2008 in the Bay of Bengal*, Journal of Geophysical Research: Oceans, 118, 2426-2437, `doi:10.1002/jgrc.20192 <http://dx.doi.org/10.1002/jgrc.20192>`_
-
-.. [FengMcphadenEtAl:SR:2013]_
-
-Ming Feng, Michael J. McPhaden, Shang-Ping Xie and Jan Hafner, 2013: *La Niña forces unprecedented Leeuwin Current warming in 2011*, Scientific Reports 3, Article number: 1277, `doi:10.1038/srep01277 <http://dx.doi.org/10.1038/srep01277>`_
-
-.. [ZilbermanRoemmichEtAl:JC:2013]_
-
-Zilberman N. V., D. H. Roemmich, and S. T. Gille, 2013: *The Mean and the Time Variability of the Shallow Meridional Overturning Circulation in the Tropical South Pacific Ocean*, J. Climate, 26, 4069-4087, `doi:10.1175/JCLI-D-12-00120.1 <http://dx.doi.org/10.1175/JCLI-D-12-00120.1>`_
-
-.. [SharmilaPillaiEtAl:CD:2013]_
-
-Sharmila S., P. A. Pillai, S. Joseph, M. Roxy, R. P. M. Krishna, R. Chattopadhyay, S. Abhilash, A. K. Sahai, B. N. Goswami, 2013: *Role of ocean-atmosphere interaction on northward propagation of Indian summer monsoon intra-seasonal oscillations (MISO)*, Climate Dynamics, `doi:10.1007/s00382-013-1854-1 <http://dx.doi.org/10.1007/s00382-013-1854-1>`_
-
-2012
-----
-
-.. [BalaguruChangEtAl:PNAS:2012]_
-
-Karthik Balaguru, Ping Chang, R. Saravanan, L. Ruby Leung, Zhao Xu, Mingkui Li, and Jen-Shan Hsieh, 2012: *Ocean barrier layers' effect on tropical cyclone intensification*, PNAS early edition, http://www.pnas.org/lookup/suppl/doi:10.1073/pnas.1201364109/-/DCSupplemental
-
-.. [HarikumarBalakrishnanNairEtAl:JAOT:2012]_
-
-Harikumar R., T.M. Balakrishnan Nair, G.S. Bhat, Shailesh Nayak, Venkat Shesu Reddem and S.S.C. Shenoi, 2012: *Ship-mounted real-time surface observational system on board Indian Vessels for validation and refinement of model forcing fields*, JAOT, `doi:10.1175/JTECH-D-11-00212.1 <http://dx.doi.org/10.1175/JTECH-D-11-00212.1>`_
-
-.. [NeethuChackoRavichandranEtAl:OD:2012]_
-
-Neethu Chacko, M. Ravichandran, R. R. Rao and S. S. C. Shenoi, 2012: *An anomalous cooling event observed in the Bay of Bengal during June 2009*, Ocean dynamics, `doi:10.1007/s10236-012-0525-9 <http://dx.doi.org/10.1007/s10236-012-0525-9>`_
-
-.. [PraveenkumarVialardEtAl:CE:2012]_
-
-Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty, M. J. McPhaden, M. F. Cronin and K. Gopala Reddy, 2012: *Evaluation of Air-sea heat and momentum fluxes for the tropical oceans and introduction of TropFlux*, CLIVAR exchanges, Issue 58, February 2012, `tropflux_clivar_final_acc.pdf <http://www.locean-ipsl.upmc.fr/~tropflux/papers/tropflux_clivar_final_acc.pdf>`_
-
-.. [PraveenkumarVialardEtAl:CD:2012]_
-
-Praveen Kumar, B., J. Vialard, M. Lengaigne, V. S. N. Murty and M. J. McPhaden, 2012: *TropFlux: Air-Sea Fluxes for the Global Tropical Oceans - Description and evaluation*, Climate Dynamics, 38, 1521-1543, `doi:10.1007/s00382-011-1115-0 <http://dx.doi.org/10.1007/s00382-011-1115-0>`_, `TropFlux_paper_accepted_r.pdf <http://www.locean-ipsl.upmc.fr/~tropflux/papers/TropFlux_paper_accepted_r.pdf>`_
-
-.. [RavichandranGirishkumarEtAl:DSR:2012]_
-
-Ravichandran, M. , M. S. Girishkumar and Stephen Riser, 2012: *Observed variability of chlorophyll-a using Argo profiling floats in the South Eastern Arabian Sea*, Deep Sea Research Part I: Oceanographic Research Papers, 65, 15-25, `doi:10.1016/j.dsr.2012.03.003 <http://dx.doi.org/10.1016/j.dsr.2012.03.003>`_
-
-
-.. [RoxyTanomotoEtAl:CD:2012]_
-
-Roxy, M., Y. Tanomoto, B. Preethi, P. Terray, R. Krishnan, 2012: *Intraseasonal SST-precipitation relationship and its spatial variability over the tropical summer monsoon region*, Clim Dyn., `doi:10.1007/s00382-012-1547-1 <http://dx.doi.org/10.1007/s00382-012-1547-1>`_
-
-.. [VialardDrushkaEtAl:CD:2012]_
-
-Vialard, J., K. Drushka, H. Bellenger, M. Lengaigne, S. Pous and J-P. Duvel, 2012: *Understanding Madden-Julian-Induced sea surface temperature variations in the North Western Australian Basin*, Clim. Dyn., http://link.springer.com/article/10.1007%2Fs00382-012-1541-7
-
-.. [VishnuVarikodenEtAl:CS:2012]_
-
-Vishnu R., Hamza Varikoden, V. Anil Kumar, S. Murali Das, G. Mohan Kumar and V N. Subi Symon, 2012: *Abnormal modulation of atmospheric parameters during the tsunami of 2004*, Current Science, Vol 102, NO. 11
-
-
-2011
-----
-
-.. [DrushkaSprintallEtAL:JC:2011]_
-
-Drushka K., J. Sprintall, S. T. Gille and Susan Wijffels, 2011: *In-situ observations of Madden-Julian Oscillation mixed layer dynamics in the Indian and Western Pacific Oceans*, J. Clim., `doi:10.1175/JCLI-D-11-00203.1 <http://dx.doi.org/10.1175/JCLI-D-11-00203.1>`_
-
-.. [FoltzMcPhadenEtAL:JC:2011]_
-
-Foltz G. R., M. J. McPhaden and R. Lumpkin, 2011: *A strong Atlantic Meridional Mode event in 2009: The role of mixed layer dynamics*, J. Clim., `doi:10.1175/JCLI-D-11-00150.1 <http://dx.doi.org/10.1175/JCLI-D-11-00150.1>`_
-
-.. [JayakumarVialardEtAl:CD:2011]_
-
-Jayakumar, A., J. Vialard, M. Lengaigne, C. Gnanaseelan, J. P. McCreary and B. Praveen Kumar, 2011: *Processes controlling the surface temperature signature of the Madden-Julian Oscillation in the thermocline ridge of the Indian Ocean*, Clim. Dyn., 37(11-12), 2217-2234, `doi:10.1007/s00382-010-0953-5 <http://dx.doi.org/10.1007/s00382-010-0953-5>`_
-
-.. [VialardJayakumarEtAL:CD:2011]_
-
-Vialard, J., A. Jayakumar, C. Gnanaseelan, M. Lengaigne, D. Sengupta and B. N. Goswami, 2011: *Processes of 30-90 day sea surface temperature variability in the Northern Indian Ocean during boreal summer*, Climate Dynamics, 38(9-10), 1901-1916, `doi:10.1007/s00382-011-1015-3 <http://dx.doi.org/10.1007/s00382-011-1015-3>`_
-
-2010
-----
-
-.. [FoltzVialardEtAl:JC:2010]_
-
-Foltz, G. R., J. Vialard, Praveen Kumar B. and M. J. McPhaden, 2010: *Seasonal mixed layer heat balance of the southwestern tropical Indian Ocean*, J. Clim., 23, 947-965, `doi:10.1175/2009JCLI3268.1 <http://dx.doi.org/10.1175/2009JCLI3268.1>`_
-
Index: unk/adm/website/selected_results.rst
===================================================================
--- /trunk/adm/website/selected_results.rst	(revision 204)
+++ 	(revision )
@@ -1,205 +1,0 @@
-.. +
-..
-.. DESCRIPTION
-.. ===========
-..
-.. selected results
-..
-.. TODO
-.. ====
-..
-.. Why is there a blank space above figure 1? (jv)
-..
-..   solved with sphinx >= 1.0.8  (tested with 1.1.2 but not yet available on
-..   cratos)
-..   see http://sphinx.pocoo.org/changes.html
-..   "#644: Fix spacing of centred figures in HTML output"
-..
-.. The units look ugly in the caption of figure 6 (jv)
-.. might a pb on latex configuration
-..
-.. Add full references of the papers at the end (jv)
-..
-.. link to real images (the ones linked here have been provided by jv with no
-.. software)
-..
-.. learn to number the figures and to make a tof (fp)
-..
-.. EVOLUTIONS
-.. ==========
-..
-.. $Id$
-..
-.. $URL$
-..
-.. - fplod 20120229
-..
-..   * add meta robots constraints
-..
-.. - fplod 20120223
-..
-..   * split long lines + one type
-..
-.. - fplod 20120222
-..
-..   * links and associated text are now defined in :ref:`prolog.rst`
-..
-.. - jv 20120221
-..
-..   * image to figure and write all captions, modify text accordingly
-..
-.. - fplod 20120221
-..
-..   * transform one image to a figure with caption and legend
-..     thanks to http://docutils.sourceforge.net/docs/ref/rst/directives.html
-..
-.. - fplod 20120219
-..
-..   * add some images
-..   * split long lines
-..   * units in math
-..   * from selected_results.odt
-..     transform to MediaWiki by OpenOffice and hand transformation to
-..     ReStructuredText (diacritical, punctuations, short lines, links !!)
-..
-.. -
-
-.. meta::
-   :robots: noindex,nofollow,noarchive
-
-.. selected_results:
-
-Selected results
-================
-
-Evaluation of the TropFlux product
-++++++++++++++++++++++++++++++++++
-
-In |pkbetal2012|_ and |pkbetal2013|_, we have evaluated various widely
-used surface heat flux / wind stress products (TropFlux, NCEP, NCEP2,
-ERA-I and OAFLUX / QuikSCAT) against surface fluxes derived from
-|gtma|_ data.
-While this does not constitute an independent validation (most of these
-products use |gtma|_ data in their derivation), this is at least a test
-of the capacity of each product to fit the largest repository of air-sea
-flux data in the tropics.
-
-.. figure:: correlation.png
-   :alt: Validation statistics to global tropical moored array data.
-   :align: center
-
-   Caption figure 1 : correlation and rms-difference of various daily net
-   heat flux / wind stress module products to
-   global tropical moored buoy array daily data (computed at each site
-   and then averaged across the sites).
-
-Figure 1 shows that, for both wind stress and net heat fluxes, TropFlux is
-the product that
-displays the highest correlation and lowest rms-difference to observations
-(closely followed by OAFlux heat fluxes and ERA-I wind stresses).
-This is an indication of the very high accuracy of the TropFlux product.
-Additional validations to independent data in
-|pkbetal2012|_
-and
-|pkbetal2013|_
-also seem to suggest that TropFlux is amongst the most accurate tested products.
-
-Tropical climate mean state and variability from TropFlux
-+++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-
-Here, we illustrate briefly how TropFlux captures climatological heat fluxes
-in the tropics, and temporal variability across timescales (in particular at
-interannual and intraseasonal timescales).
-
-.. figure:: netflux_clim_1989_2010_website.jpg
-   :alt: Net Heat Flux climatology from TropFlux (1989-2010)
-   :align: center
-   :width: 80%
-
-   Caption figure 2 : TropFlux net flux climatology (1989-2010).
-
-.. figure:: stress_clim_1989_2010_website.jpg
-   :alt: Momentum Flux climatology from TropFlux (1989-2010)
-   :align: center
-   :width: 80%
-
-   Caption figure 3 : TropFlux wind stress climatology (1989-2010).
-
-The main pattern visible on figure 2 is the large heating of the
-Pacific and Atlantic cold tongues.
-Figure 3 shows very clearly the easterlies in the Tropical Pacific
-and Atlantic Oceans, the monsoon flow in the Indian Ocean, and very weak
-winds in convergence zones (western Pacific, equatorial Indian Ocean,
-eastern Atlantic and Pacific ITCZ).
-
-
-.. figure:: std_netflux_ano_1989_2010_website.jpg
-   :alt: Std of monthly Net Heat Flux anomaly from TropFlux (1989-2010)
-   :align: center
-   :width: 80%
-
-   Caption figure 4 : Standard deviation of TropFlux net heat flux monthly
-   anomalies with respect to the mean seasonal cycle (1989-2010).
-
-.. figure:: std_taux_ano_1989_2010_website.jpg
-   :alt: Std of monthly zonal wind stress anomaly from TropFlux (1989-2010)
-   :align: center
-   :width: 80%
-
-   Caption figure 5 : Standard deviation of TropFlux wind stress monthly
-   anomalies with respect to the mean seasonal cycle (1989-2010).
-
-Figures 4 and 5 show low frequency non-seasonal variability (i.e. interannual
-variability).
-There is of course increased variance toward mid-latitudes due to the effect
-of midlatitude stochastic forcing.
-But interannual wind stress and heat flux
-variations associated with the El Niño phenomenon are very clear close to
-the equator and dateline.
-In the eastern equatorial Indian ocean, there is also a clear interannual
-wind stress variability associated with the Indian Ocean Dipole and remote
-response to El Niño.
-
-Intraseasonal variability
-+++++++++++++++++++++++++
-
-.. figure:: interseasonal.png
-   :alt: Wind stress and net heat flux perturbations associated with monsoon
-         active/break phases.
-   :align: center
-
-   Caption figure 6 : 7-day low-passed a) Outgoing longwave radiation (a proxy
-   of deep
-   atmospheric convection), b) wind stress and c) net air-sea flux at
-   the 15°N, 90°E RAMA mooring during the 2009 monsoon.
-   Low values in the first panel indicate deep atmospheric convection (monsoon
-   active phases, roughly outlined from the grey stripes).
-   The rain rate measured by the mooring is shown in red on panel a.
-   Panels b and c show the
-   |rama|_ mooring-derived air-sea
-   fluxes estimates (thick, red curve) and estimates from the
-   other products in various colors.
-   The root-mean square difference of each product with TPR is indicated on
-   panel b (in  :math:`N.m^-2`) and c (in  :math:`W.m^-2`).
-
-Finally, figure 6 is an illustration of intraseasonal surface
-fluxes variations captured by the TropFlux (and other) products.
-The summer monsoon is associated with intraseasonal variations of the
-convection, at a quasi bi-weekly and at a 30-50 days timescale
-(e.g. Goswami 2005), which modulate rainfall over India.
-Those intraseasonal oscillations have a clear surface temperature response in
-the Bay of Bengal (e.g. Vialard et al. 2012), which may feedback on the
-atmospheric convection (e.g. Sobel et al. 2008).
-The grey stripes on figure 6 are associated with "active" periods of
-intense convection (local minima in OLR values).
-During these periods, there are strong winds in the Bay of Bengal that result
-both in strong wind stresses, and intense latent heat fluxes.
-These intense latent heat fluxes combine with decreased surface shortwave
-radiation (due to clouds), and result in decreased net heat fluxes.
-While all products display qualitatively increased wind stresses and
-decreased heat fluxes for active convection phases, there are non-negligible
-differences between products.
-For the particular intraseasonal event shown here, TropFlux has again the
-lowest rms-difference to
-|rama|_ flux data amongst all products.
-
Index: /trunk/docs/docs_dev/makefile_non_sphinx
===================================================================
--- /trunk/docs/docs_dev/makefile_non_sphinx	(revision 204)
+++ /trunk/docs/docs_dev/makefile_non_sphinx	(revision 205)
@@ -17,5 +17,5 @@
 # :ref:`Makefile`
 #
-# :ref:`<fptools:extract_rst.sh>`
+# :ref:`<extract_rst.sh fptools:extract_rst.sh>`
 #
 # TODO
Index: /trunk/docs/docs_dev/source/guides/bibliography.rst
===================================================================
--- /trunk/docs/docs_dev/source/guides/bibliography.rst	(revision 204)
+++ /trunk/docs/docs_dev/source/guides/bibliography.rst	(revision 205)
@@ -68,6 +68,5 @@
 .. [McPhadenMeyersEtAl:BAMS:2009] McPhaden, M. J., G. Meyers, K. Ando,Y. Masumoto, V. S. N. Murty, M. Ravichandran, F. Syamsudin, J. Vialard, L. Yu, and W. Yu, 2009: RAMA: The Research Moored Array for African-Asian-Australian Monsoon on Analysis and Prediction. Bull. Am. Meteorol. Soc., 90, 459-480, doi:10.1175/2008BAMS2608.1
 
-.. [McPhadenBusalacchiEtAL:JGR:1998] McPhaden, M.J., A.J. Busalacchi, R. Cheney, J.R. Donguy, K.S. Gage, D. Halpern, M. Ji, P. Julian, G. Meyers, G.T. Mitchum, P.P. Niiler, J. Picaut, R.W. Reynolds, N. Smith, K. Takeuchi, 1998: The Tropical Ocean-Global Atmosphere (TOGA) observing system: A decade of progress. J. Geophys. Res., 103, 14, 169-14,24
-0.
+.. [McPhadenBusalacchiEtAL:JGR:1998] McPhaden, M.J., A.J. Busalacchi, R. Cheney, J.R. Donguy, K.S. Gage, D. Halpern, M. Ji, P. Julian, G. Meyers, G.T. Mitchum, P.P. Niiler, J. Picaut, R.W. Reynolds, N. Smith, K. Takeuchi, 1998: The Tropical Ocean-Global Atmosphere (TOGA) observing system: A decade of progress. J. Geophys. Res., 103, 14, 169-14, 240.
 
 .. [AOMIP] Atmospheric Forcing Data - Humidity (AOMIP) http://efdl.cims.nyu.edu/project_aomip/forcing_data/atmosphere/humidity.html
Index: /trunk/docs/docs_dev/source/guides/builddoc.rst
===================================================================
--- /trunk/docs/docs_dev/source/guides/builddoc.rst	(revision 204)
+++ /trunk/docs/docs_dev/source/guides/builddoc.rst	(revision 205)
@@ -30,4 +30,8 @@
 ..
 .. $URL$
+..
+.. - fplod 20140326T150244Z callisto.locean-ipsl.upmc.fr (Linux)
+..
+..   * website locean réduit à sa plus simple expression
 ..
 .. - fplod 20120206
@@ -114,6 +118,5 @@
    cd ${PROJECT}/adm/
    make clean
-   make before
-   make html_user
+   make html
 
 et regarder le résultat dans :file:`./website/_build/html/index.html`.
Index: /trunk/src/t2m_correction_ncdf.pro
===================================================================
--- /trunk/src/t2m_correction_ncdf.pro	(revision 204)
+++ /trunk/src/t2m_correction_ncdf.pro	(revision 205)
@@ -89,5 +89,5 @@
 ;
 ; .. code-block:: bash
-:
+;
 ;    ncks -v time -d time,0,1 /usr/work/incas/fplod/tropflux_d/TropFlux_t2m_19890101_20091231.nc
 ;
Index: /trunk/src/test/average_pb.jnl
===================================================================
--- /trunk/src/test/average_pb.jnl	(revision 204)
+++ /trunk/src/test/average_pb.jnl	(revision 205)
@@ -116,6 +116,6 @@
 LET sst_ave2 = sst[x=66:70@ave,y=6:18@ave,t=01-may-2001:30-jun-2001]
 PLOT sst_ave2
-!++LET/TITLE="SST anomaly x=66:70" sst_anom2 = sst - sst_ave2
-!++PLOT sst_anom2
+! ++LET/TITLE="SST anomaly x=66:70" sst_anom2 = sst - sst_ave2
+! ++PLOT sst_anom2
 !
 ! save data
@@ -123,3 +123,3 @@
 !
 ! save figure++
-!++exit
+! ++exit
Index: /trunk/src/tropflux.pro
===================================================================
--- /trunk/src/tropflux.pro	(revision 204)
+++ /trunk/src/tropflux.pro	(revision 205)
@@ -1,3 +1,3 @@
-+
+;+
 ;
 ; ============
