1 | #!/bin/ksh |
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2 | #----------------------------------------------------------------- |
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3 | function LMDZ_sed |
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4 | { |
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5 | IGCM_debug_PushStack "LMDZ_sed" |
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6 | |
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7 | sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp |
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8 | RET=$? |
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9 | echo "LMDZ_sed : ${1} ${2} ${3}" |
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10 | \mv ${1}.tmp ${1} |
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11 | |
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12 | IGCM_debug_PopStack "LMDZ_sed" |
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13 | return $RET |
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14 | } |
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15 | |
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16 | function ATM_Initialize |
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17 | { |
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18 | IGCM_debug_PushStack "ATM_Initialize" |
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19 | |
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20 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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21 | |
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22 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19 |
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23 | |
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24 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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25 | |
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26 | ##-- Calendar type for LMDZ |
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27 | case ${config_UserChoices_CalendarType} in |
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28 | leap|gregorian) |
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29 | CalendarTypeForLmdz=earth_366d;; |
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30 | noleap) |
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31 | CalendarTypeForLmdz=earth_365d;; |
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32 | 360d) |
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33 | CalendarTypeForLmdz=earth_360d;; |
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34 | *) |
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35 | CalendarTypeForLmdz=earth_360d |
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36 | esac |
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37 | |
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38 | ##- LMDZ physics version |
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39 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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40 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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41 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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42 | else |
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43 | LMDZ_Physics=AP |
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44 | fi |
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45 | echo LMDZ physics version : ${LMDZ_Physics} |
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46 | |
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47 | ##- Create_etat0_limit version |
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48 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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49 | CREATE=${lmdz_UserChoices_CREATE} |
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50 | echo create_etat0_limit version : ${CREATE} |
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51 | |
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52 | ## - LMDZ choice of config.def file |
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53 | ## ConfType must be set in lmdz.card |
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54 | ConfType=${lmdz_UserChoices_ConfType} |
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55 | |
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56 | ##- LMDZ output level, to be set in lmdz.card |
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57 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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58 | # OutLevel is not set. Take default value low. |
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59 | OutLevel=low |
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60 | else |
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61 | OutLevel=${lmdz_UserChoices_OutLevel} |
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62 | fi |
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63 | |
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64 | ##-- Output frequency purpose .... |
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65 | ##-- Initialisation .... |
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66 | ok_mensuel=n |
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67 | ok_journe=n |
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68 | ok_hf=n |
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69 | ok_hf3h=n |
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70 | ok_hf3hm=n |
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71 | ok_stn=n |
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72 | |
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73 | case ${config_UserChoices_PeriodLength} in |
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74 | 1Y|1y|1M|1m) ok_mensuel=y ;; |
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75 | 5D|5d|1D|1d) ok_journe=y ;; |
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76 | esac |
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77 | |
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78 | for frequency in ${config_ATM_WriteFrequency} ; do |
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79 | case ${frequency} in |
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80 | 1M|1m) ok_mensuel=y ;; |
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81 | esac |
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82 | case ${frequency} in |
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83 | 5D|5d|1D|1d) ok_journe=y ;; |
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84 | esac |
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85 | case ${frequency} in |
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86 | HF|hf) ok_hf=y ;; |
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87 | esac |
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88 | case ${frequency} in |
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89 | HF3h|hf3h) ok_hf3h=y ;; |
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90 | esac |
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91 | case ${frequency} in |
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92 | HF3hm|hf3hm) ok_hf3hm=y ;; |
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93 | esac |
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94 | case ${frequency} in |
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95 | STN|stn) ok_stn=y ;; |
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96 | esac |
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97 | done |
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98 | |
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99 | ## Read LMDZ_NbPeriod_adjust option in lmdz.card |
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100 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices LMDZ_NbPeriod_adjust |
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101 | LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust} |
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102 | |
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103 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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104 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices LMDZ_Bands_file_name |
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105 | LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name} |
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106 | fi |
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107 | |
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108 | ## Read LMDZ_Freq_aero and LMDZ_Length_aero in lmdz.card |
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109 | LMDZ_Freq_aero=${lmdz_UserChoices_LMDZ_Freq_aero} |
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110 | LMDZ_Length_aero=${lmdz_UserChoices_LMDZ_Length_aero} |
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111 | |
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112 | ## Read LMDZ_COSP_monthly LMDZ_COSP_daily and LMDZ_COSP_hf in lmdz.card |
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113 | LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK} |
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114 | LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly} |
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115 | LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily} |
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116 | LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf} |
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117 | |
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118 | ## Read LMDZ_NMC_monthly LMDZ_NMC_daily and LMDZ_NMC_hf in lmdz.card |
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119 | LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly} |
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120 | LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily} |
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121 | LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf} |
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122 | |
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123 | IGCM_debug_PopStack "ATM_Initialize" |
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124 | } |
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125 | |
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126 | #----------------------------------------------------------------- |
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127 | function ATM_Update |
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128 | { |
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129 | IGCM_debug_PushStack "ATM_Update" |
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130 | |
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131 | |
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132 | case ${config_UserChoices_PeriodLength} in |
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133 | *Y|*y) |
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134 | LMDZ_ecrit_ISCCP=30. |
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135 | LMDZ_periodav=30. |
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136 | if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then |
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137 | echo Do not consider following warning if your running create_etat0_limit : |
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138 | echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d |
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139 | fi |
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140 | ;; |
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141 | *) |
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142 | LMDZ_ecrit_ISCCP=${PeriodLengthInDays}. |
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143 | LMDZ_periodav=${PeriodLengthInDays}. |
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144 | ;; |
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145 | esac |
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146 | |
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147 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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148 | if [ ${CumulPeriod} -eq 1 ] ; then |
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149 | RAZ_DATE=1 |
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150 | else |
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151 | RAZ_DATE=0 |
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152 | fi |
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153 | |
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154 | ## algo : For CumulPeriod=1 ; |
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155 | ## IF NbPeriod_Adjust = 0, Get Bands file directly from server, store it with _0 suffix |
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156 | ## ELSE LMDZ_adjust=y ; save Bands file on file server ; |
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157 | ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; Get Bands file from server (CumulPeriod-1) ; LMDZ_adjust=y ; save Bands file on file server ; |
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158 | ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from server (CumulPeriod=LMDZ_NbPeriod_adjust 0 to force it) ; Use Bands ; |
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159 | |
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160 | if [ ${CumulPeriod} -eq 1 ] ; then |
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161 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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162 | IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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163 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
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164 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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165 | IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0" |
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166 | fi |
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167 | fi |
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168 | |
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169 | LMDZ_adjust=n |
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170 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y |
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171 | |
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172 | RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart |
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173 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) |
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174 | |
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175 | [ ${CumulPeriod} -gt 1 ] && ( IGCM_sys_Get ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ; IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ) |
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176 | |
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177 | ##-- GHG forcing : |
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178 | ## If forcing file exist in run directory, read values for the current year and modify config.def |
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179 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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180 | IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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181 | LMDZ_sed config.def solaire ${IPCC_SOLAR} |
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182 | fi |
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183 | if [ -f CO2.txt ] ; then |
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184 | IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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185 | LMDZ_sed config.def co2_ppm ${IPCC_CO2} |
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186 | fi |
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187 | if [ -f CH4.txt ] ; then |
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188 | IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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189 | LMDZ_sed config.def CH4_ppb ${IPCC_CH4} |
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190 | fi |
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191 | if [ -f N2O.txt ] ; then |
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192 | IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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193 | LMDZ_sed config.def N2O_ppb ${IPCC_N2O} |
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194 | fi |
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195 | if [ -f CFC11.txt ] ; then |
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196 | IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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197 | LMDZ_sed config.def CFC11_ppt ${IPCC_CFC11} |
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198 | fi |
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199 | if [ -f CFC12.txt ] ; then |
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200 | IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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201 | LMDZ_sed config.def CFC12_ppt ${IPCC_CFC12} |
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202 | fi |
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203 | |
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204 | # Add special treatement for CARBON CYCLE |
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205 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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206 | |
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207 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
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208 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
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209 | typeset PathCO2log |
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210 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
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211 | |
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212 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ]) ; then |
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213 | ##--Initialization of fluxes to an undefined value at the first run |
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214 | UndefinedValueCo2=-9999 |
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215 | InitPeriodCo2=0 |
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216 | InitDateBeginCo2=${UndefinedValueCo2} |
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217 | InitYearCo2=$(( ${year} - 1 )) |
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218 | InitDateEndCo2=${InitYearCo2}1231 |
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219 | fCO2_ff=${UndefinedValueCo2} |
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220 | CO2SBG=${UndefinedValueCo2} |
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221 | CO2LU=${UndefinedValueCo2} |
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222 | CO2MBG=${UndefinedValueCo2} |
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223 | CO2_ppm_prec=${UndefinedValueCo2} |
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224 | # Get the initial value of atmosp. pco2 |
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225 | CO2_ppm=${lmdz_UserChoices_co2_init} |
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226 | |
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227 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
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228 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
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229 | |
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230 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
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231 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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232 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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233 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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234 | |
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235 | # Get the path where the log file co2.log is |
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236 | PathCO2log=${SUBMIT_DIR} |
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237 | # Get Previous line in co2.log |
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238 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
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239 | |
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240 | else |
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241 | |
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242 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
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243 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
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244 | #SubmitRestartPath= |
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245 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ]) ; then |
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246 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
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247 | PathCO2log=${config_ATM_SubmitRestartPath} |
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248 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
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249 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
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250 | |
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251 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
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252 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
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253 | |
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254 | # Save Last Line of control in new co2.log file |
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255 | InitPeriodCo2=0 |
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256 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
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257 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
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258 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
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259 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
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260 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
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261 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
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262 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
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263 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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264 | |
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265 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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266 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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267 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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268 | else |
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269 | # Get restart line in co2.log |
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270 | PathCO2log=${SUBMIT_DIR} |
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271 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
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272 | # Get the value of atmosp. pco2 in co2.log |
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273 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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274 | fi |
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275 | |
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276 | fi |
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277 | |
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278 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
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279 | # Modify co2_ppm in config.def only for historical run |
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280 | LMDZ_sed config.def co2_ppm ${CO2_ppm} |
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281 | fi |
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282 | fi |
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283 | # end CARBON_CYCLE |
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284 | |
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285 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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286 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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287 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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288 | LMDZ_COSP_daily=y |
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289 | fi |
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290 | |
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291 | |
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292 | ## output.def parameters |
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293 | # columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def : |
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294 | # histmth histday histhf histfh3h histhf3hm histstn |
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295 | LMDZ_sed output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}" |
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296 | LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP} |
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297 | LMDZ_sed output.def ok_cosp ${LMDZ_COSP_OK} |
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298 | LMDZ_sed output.def ok_mensuelCOSP ${LMDZ_COSP_monthly} |
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299 | LMDZ_sed output.def ok_journeCOSP ${LMDZ_COSP_daily} |
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300 | LMDZ_sed output.def ok_hfCOSP ${LMDZ_COSP_hf} |
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301 | LMDZ_sed output.def ok_histNMC "${LMDZ_NMC_monthly}, ${LMDZ_NMC_daily}, ${LMDZ_NMC_hf}" |
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302 | |
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303 | ## gcm.def parameters : |
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304 | # Modification only for new physics |
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305 | if [ X${LMDZ_Physics} = X"NPv3.0" ] ; then |
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306 | LMDZ_sed gcm.def iphysiq 5 |
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307 | fi |
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308 | |
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309 | |
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310 | ## run.def parameters |
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311 | LMDZ_sed run.def dayref ${InitDay} |
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312 | LMDZ_sed run.def anneeref ${InitYear} |
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313 | LMDZ_sed run.def calend ${CalendarTypeForLmdz} |
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314 | LMDZ_sed run.def nday ${PeriodLengthInDays} |
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315 | LMDZ_sed run.def raz_date ${RAZ_DATE} |
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316 | LMDZ_sed run.def periodav ${LMDZ_periodav} |
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317 | LMDZ_sed run.def adjust ${LMDZ_adjust} |
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318 | |
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319 | |
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320 | ## Determine from the variable ListOfComponents in config.card coupling to external models |
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321 | ## and set corresponding parameters in run.def |
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322 | echo ListOfComponents now running : ${config_ListOfComponents[*]} |
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323 | |
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324 | if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then |
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325 | echo "Activate ORCHIDEE, set VEGET=y in run.def" |
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326 | LMDZ_sed run.def VEGET y |
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327 | else |
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328 | echo "No ORCHIDEE, set VEGET=n in run.def" |
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329 | LMDZ_sed run.def VEGET n |
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330 | fi |
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331 | |
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332 | if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then |
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333 | echo "Activate coupling to ocean, set type_ocean=couple in run.def" |
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334 | LMDZ_sed run.def type_ocean couple |
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335 | else |
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336 | echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def" |
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337 | LMDZ_sed run.def type_ocean force |
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338 | fi |
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339 | |
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340 | if [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
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341 | echo "Activate coupling to INCA, set type_trac=inca in run.def" |
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342 | LMDZ_sed run.def type_trac inca |
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343 | elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then |
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344 | echo "Activate coupling to REPROBUS, set type_trac=repr in run.def" |
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345 | LMDZ_sed run.def type_trac repr |
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346 | else |
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347 | echo "No coupling to chemistry model, set type_trac=lmdz in run.def" |
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348 | LMDZ_sed run.def type_trac lmdz |
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349 | fi |
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350 | |
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351 | |
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352 | # guide.def : Activate nudging if ok_guide set in lmdz.card |
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353 | if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then |
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354 | LMDZ_sed guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
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355 | fi |
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356 | |
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357 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
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358 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta |
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359 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
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360 | if [ ${ByPass_hgardfou_teta} = y ] ; then |
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361 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
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362 | IGCM_sys_Mv gcm.def.tmp gcm.def |
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363 | echo |
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364 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
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365 | echo |
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366 | cat gcm.def |
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367 | ByPass_hgardfou_teta=n |
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368 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
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369 | fi |
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370 | |
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371 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
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372 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats |
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373 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
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374 | if [ ${ByPass_hgardfou_mats} = y ] ; then |
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375 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
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376 | IGCM_sys_Mv gcm.def.tmp gcm.def |
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377 | echo |
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378 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
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379 | echo |
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380 | cat gcm.def |
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381 | ByPass_hgardfou_mats=n |
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382 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
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383 | fi |
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384 | |
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385 | if ( ${FirstInitialize} ) ; then |
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386 | if [ -f start.nc ] && [ -f startphy.nc ] ; then |
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387 | # The restart files already exist. They have been copied from a previous run or from a CREATE job |
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388 | echo "Restart files for LMDZ have been copied from a previous run" |
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389 | elif [ -f create_etat0_limit* ] || [ -f ce0l* ] && ! [ -f lmdz.x ] ; then |
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390 | # Do nothing because it is the program for creating restart files that is running and not LMDZ |
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391 | echo "create_etat0_limit.e will create initial start files" |
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392 | else |
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393 | # Restart files have to be created |
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394 | echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ" |
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395 | if [ ${DRYRUN} -le 2 ] ; then |
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396 | ##-- suppression of ozone file construction -- |
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397 | cp config.def config.def.save |
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398 | LMDZ_sed config.def read_climoz 0 |
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399 | IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/. |
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400 | if [ ${DRYRUN} -le 1 ] ; then |
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401 | ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e |
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402 | IGCM_sys_Put_Out start.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc |
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403 | IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc |
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404 | fi |
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405 | IGCM_sys_Mv config.def.save config.def |
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406 | else |
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407 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated" |
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408 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack |
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409 | fi |
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410 | fi |
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411 | fi |
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412 | |
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413 | IGCM_debug_PopStack "ATM_Update" |
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414 | } |
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415 | |
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416 | #----------------------------------- |
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417 | function ATM_Finalize |
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418 | { |
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419 | IGCM_debug_PushStack "ATM_Finalize" |
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420 | |
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421 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
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422 | |
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423 | |
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424 | # Add special treatement for CARBON CYCLE |
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425 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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426 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
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427 | |
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428 | # Fossil fuel emission |
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429 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
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430 | # For Control, no fossil fuel emission : |
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431 | fCO2_ff=0 |
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432 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
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433 | else |
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434 | # For historical, get the fossile fuel file : |
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435 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
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436 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
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437 | fi |
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438 | |
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439 | # Get the value of ocean carbon flux |
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440 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
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441 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
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442 | echo "Ocean carbon flux :" ${CO2MBG} |
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443 | |
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444 | # Get the value of land fluxes |
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445 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
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446 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
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447 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
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448 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
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449 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
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450 | echo "LU flux (FLUC) :" ${CO2LU} |
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451 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
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452 | |
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453 | # Previous CO2 |
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454 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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455 | echo "Previous CO2 :" ${CO2_ppm_prec} |
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456 | |
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457 | # Formula |
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458 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
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459 | echo "New CO2 :" ${CO2_ppm} |
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460 | |
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461 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
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462 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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463 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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464 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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465 | |
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466 | fi |
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467 | |
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468 | echo FINALIZE ATM ! |
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469 | |
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470 | IGCM_debug_PopStack "ATM_Finalize" |
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471 | } |
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