source: CONFIG/UNIFORM/v5/LMDZOR_v5/GENERAL/DRIVER/lmdz.driver @ 1897

Last change on this file since 1897 was 1897, checked in by jgipsl, 10 years ago

Corrected bug while using experience CREATE :
Added test if file Bands_ exists before coping it.

File size: 24.4 KB
Line 
1#!/bin/ksh
2#-----------------------------------------------------------------
3function LMDZ_sed
4{
5# Usage : LMDZ_sed filedef var_name myvalue
6#         In file filedef modify the line containing var_name=xxx into var_name=myvalue
7    IGCM_debug_PushStack "LMDZ_sed"
8   
9    # Test if the fichier exist
10    if [ ! -f ${1} ] ; then
11        echo "WARNING : ${1} file does not exist. Following will not be done : LMDZ_sed : ${1} ${2} ${3}"
12        return
13    fi
14
15    sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp
16    RET=$?
17    echo "LMDZ_sed : ${1} ${2} ${3}"
18    \mv ${1}.tmp ${1}
19
20    IGCM_debug_PopStack "LMDZ_sed"
21    return $RET
22}
23function LMDZ_sed_default
24{
25# Usage : LMDZ_sed_default filedef var_name
26#         In file filedef modify the line  "var_name=xxx DEFAULT= myvalue"
27#         into "var_name=myvalue"
28    IGCM_debug_PushStack "LMDZ_sed_default"
29
30    DefValue=$( grep ${2} ${1}  | awk -F"DEFAULT.=*" '{print $2}')
31
32    LMDZ_sed  ${1} ${2} $DefValue
33    IGCM_debug_PopStack "LMDZ_sed_default"
34    return $RET
35}
36
37
38function ATM_Initialize
39{
40    IGCM_debug_PushStack "ATM_Initialize"
41
42    RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}')
43
44    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19
45
46    RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
47    RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
48    RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
49    RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
50
51    ##-- Calendar type for LMDZ
52    case ${config_UserChoices_CalendarType} in
53        leap|gregorian)
54            CalendarTypeForLmdz=earth_366d;;
55        noleap)
56            CalendarTypeForLmdz=earth_365d;;
57        360d)
58            CalendarTypeForLmdz=earth_360d;;
59        *)
60            CalendarTypeForLmdz=earth_360d
61    esac
62
63    ##- LMDZ physics version
64    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
65    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
66        LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
67    else
68        LMDZ_Physics=AP
69    fi
70    echo LMDZ physics version : ${LMDZ_Physics}
71
72    ##- Create_etat0_limit version
73    ##  Define variable CREATE only if it is set in lmdz.card section UserChoices.
74    ##  This variable is only used in lmdz.card to choose input files.
75    if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
76        IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
77        CREATE=${lmdz_UserChoices_CREATE}
78        echo create_etat0_limit version : ${CREATE}
79    fi
80
81
82    ## - LMDZ choice of config.def file
83    ##   ConfType must be set in lmdz.card
84    ConfType=${lmdz_UserChoices_ConfType}
85
86    ##- LMDZ output level, to be set in lmdz.card
87    if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
88        # OutLevel is not set. Take default value low.
89        OutLevel=low
90    else
91        OutLevel=${lmdz_UserChoices_OutLevel}
92    fi
93
94    ##-- Output frequency purpose ....
95    ##--  Initialisation  ....
96    ok_mensuel=n
97    ok_journe=n
98    ok_hf=n
99    ok_hf3h=n
100    ok_hf3hm=n
101    ok_stn=n
102
103    case ${config_UserChoices_PeriodLength} in
104        1Y|1y|1M|1m) ok_mensuel=y ;;
105        5D|5d|1D|1d) ok_journe=y ;;
106    esac
107
108    for frequency in ${config_ATM_WriteFrequency} ; do
109        case ${frequency} in
110            1M|1m) ok_mensuel=y ;;
111        esac
112        case ${frequency} in
113            5D|5d|1D|1d) ok_journe=y ;;
114        esac
115        case ${frequency} in
116            HF|hf) ok_hf=y ;;
117        esac
118        case ${frequency} in
119            HF3h|hf3h) ok_hf3h=y ;;
120        esac
121        case ${frequency} in
122            HF3hm|hf3hm) ok_hf3hm=y ;;
123        esac
124        case ${frequency} in
125            STN|stn) ok_stn=y ;;
126        esac
127    done
128
129    ## Read LMDZ_NbPeriod_adjust option in lmdz.card
130    if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then
131        # The variable is not in lmdz.card, set default value
132        LMDZ_NbPeriod_adjust=0
133    else       
134        LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust}
135    fi
136
137    if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
138        LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name}
139    fi
140
141
142    ##  Read LMDZ_COSP_OK in lmdz.card
143    if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then
144        LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK}
145    else
146        LMDZ_COSP_OK=n
147    fi
148    ##  Read LMDZ_COSP_monthly in lmdz.card
149    if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then
150        LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly}
151    else
152        LMDZ_COSP_monthly=n
153    fi
154    ##  Read LMDZ_COSP_daily in lmdz.card
155    if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then
156        LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily}
157    else
158        LMDZ_COSP_daily=n
159    fi
160    ##  Read LMDZ_COSP_hf in lmdz.card
161    if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then
162        LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf}
163    else
164        LMDZ_COSP_hf=n
165    fi
166
167    ##  Read LMDZ_NMC_monthly in lmdz.card
168    if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then
169        LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly}
170    else
171        LMDZ_NMC_monthly=n
172    fi
173
174    ## Read LMDZ_NMC_daily in lmdz.card
175    if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then
176        LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily}
177    else
178        LMDZ_NMC_daily=n
179    fi
180   
181    ## Read LMDZ_NMC_hf in lmdz.card
182    if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then
183        LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf}
184    else
185        LMDZ_NMC_hf=n
186    fi
187
188
189    IGCM_debug_PopStack "ATM_Initialize"
190}
191
192#-----------------------------------------------------------------
193function ATM_Update
194{
195    IGCM_debug_PushStack "ATM_Update"
196
197
198    case ${config_UserChoices_PeriodLength} in
199        *Y|*y) 
200               LMDZ_ecrit_ISCCP=30.
201               LMDZ_periodav=30.
202               if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then
203                  echo Do not consider following warning if your running create_etat0_limit :
204                  echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d
205               fi
206               ;;
207        *)
208               LMDZ_ecrit_ISCCP=${PeriodLengthInDays}.
209               LMDZ_periodav=${PeriodLengthInDays}.
210               ;;
211    esac
212 
213    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
214    if [ ${CumulPeriod} -eq 1 ] ; then
215        RAZ_DATE=1
216    else
217        RAZ_DATE=0
218    fi
219
220    ## Algorithme for special treatment for Bands_xxx file
221    ## For CumulPeriod=1 ;
222    ##        IF NbPeriod_Adjust = 0 ; set LMDZ_adjust=n
223    ##                                IF LMDZ_Bands_file_name was given in lmdz.card THEN Get Bands file directly from server. Store it later with _0 suffix.
224    ##                                IF no LMDZ_Bands_file_name was given, start without Bands file. Store it later with _0 suffix.
225    ##        ELSE set LMDZ_adjust=y ; start without Bands file ; Store it later in PARAM/ directory in submit directory with suffix _1 ;
226    ##
227    ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ;
228    ##       Get Bands file from PARAM/ in submit directory (CumulPeriod-1) ; set LMDZ_adjust=y ; Store Bands file in PARAM/ ;
229    ##
230    ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from PARAM/ ; Do not store ;
231
232    if [ ${CumulPeriod} -eq 1 ] ; then
233        if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
234            if [ ! X${LMDZ_Bands_file_name} = X ] ; then
235                IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
236                IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
237                IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0"
238            fi
239        fi
240    fi
241
242    LMDZ_adjust=n
243    [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y
244
245    RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart
246    [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) 
247
248    # Get Bands file from PARAM directory if file exist
249    if [ ${CumulPeriod} -gt 1 && -f ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} ] ; then
250        IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
251        IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
252    fi
253
254    ##-- GHG forcing :
255    ##   If forcing file exist in run directory, read values for the current year and modify config.def
256    if [ -f SOLARANDVOLCANOES.txt ] ; then
257        IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
258        LMDZ_sed config.def solaire     ${IPCC_SOLAR}
259    else
260        LMDZ_sed_default config.def solaire
261    fi
262    if [ -f CO2.txt ] ; then
263        IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
264        LMDZ_sed config.def co2_ppm     ${IPCC_CO2}
265    else
266        LMDZ_sed_default config.def co2_ppm
267    fi
268
269
270    if [ -f CH4.txt ] ; then
271        IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
272        LMDZ_sed config.def CH4_ppb     ${IPCC_CH4}
273    else
274        LMDZ_sed_default config.def CH4_ppb
275    fi
276    if [ -f N2O.txt ] ; then
277        IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
278        LMDZ_sed config.def N2O_ppb     ${IPCC_N2O}
279    else
280        LMDZ_sed_default config.def N2O_ppb
281    fi
282    if [ -f CFC11.txt ] ; then
283        IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
284        LMDZ_sed config.def CFC11_ppt   ${IPCC_CFC11}
285    else
286        LMDZ_sed_default config.def CFC11_ppt
287    fi
288    if [ -f CFC12.txt ] ; then
289        IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
290        LMDZ_sed config.def CFC12_ppt   ${IPCC_CFC12}
291    else
292        LMDZ_sed_default config.def CFC12_ppt
293    fi
294
295
296    ##-- Add special treatement for CARBON CYCLE
297    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
298        ATM_Carbon_Update
299    fi
300
301
302    ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
303    ##   COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
304    if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] &&  [ ${year} -ge 1979 ]) ; then
305        LMDZ_COSP_daily=y
306    fi
307
308
309    ## output.def parameters
310    #  columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def : 
311    #                                            histmth       histday        histhf    histfh3h   histhf3hm   histstn
312    LMDZ_sed output.def phys_out_filekeys       "${ok_mensuel} ${ok_journe}   ${ok_hf}  ${ok_hf3h} ${ok_hf3hm} ${ok_stn}"
313    LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP}
314    LMDZ_sed output.def ok_cosp     ${LMDZ_COSP_OK}
315    LMDZ_sed output.def ok_mensuelCOSP  ${LMDZ_COSP_monthly}
316    LMDZ_sed output.def ok_journeCOSP   ${LMDZ_COSP_daily}
317    LMDZ_sed output.def ok_hfCOSP   ${LMDZ_COSP_hf}
318    LMDZ_sed output.def ok_histNMC  "${LMDZ_NMC_monthly} ${LMDZ_NMC_daily} ${LMDZ_NMC_hf}"
319
320    ## gcm.def parameters :
321    # Modification only for new physics
322    if [ X${LMDZ_Physics} = X"NPv3.1" ] ; then
323        LMDZ_sed gcm.def iphysiq     5
324    else
325        LMDZ_sed_default gcm.def iphysiq
326    fi
327
328
329    ## run.def parameters
330    LMDZ_sed run.def dayref   ${InitDay}
331    LMDZ_sed run.def calend   ${CalendarTypeForLmdz}
332    LMDZ_sed run.def nday     ${PeriodLengthInDays}
333    LMDZ_sed run.def raz_date ${RAZ_DATE}
334    LMDZ_sed run.def periodav ${LMDZ_periodav}
335    LMDZ_sed run.def adjust   ${LMDZ_adjust}
336
337    # Set anneeref different for gcm and ce0l
338    # Test if executable create_etat0_limit is present and lmdz.x is not present
339    if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
340        # for case ce0l : always take current year
341        LMDZ_sed run.def anneeref ${year}
342    else
343        # for case gcm : take first year of simulation
344        LMDZ_sed run.def anneeref ${InitYear}
345    fi
346
347    # Activate creation of file grilles_gcm.nc only at first period
348    if [ ${CumulPeriod} -eq 1 ] ; then
349        LMDZ_sed run.def grilles_gcm_netcdf y
350    else
351        LMDZ_sed run.def grilles_gcm_netcdf n
352    fi
353
354    ## Determine from the variable ListOfComponents in config.card coupling to external models
355    ## and set corresponding parameters in run.def
356    echo ListOfComponents now running : ${config_ListOfComponents[*]}
357
358    if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
359        echo "Activate ORCHIDEE, set VEGET=y in run.def"
360        LMDZ_sed run.def VEGET y
361    else
362        echo "No ORCHIDEE, set VEGET=n in run.def"
363        LMDZ_sed run.def VEGET n
364    fi
365
366    if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
367        echo "Activate coupling to ocean, set type_ocean=couple in run.def"
368        LMDZ_sed run.def type_ocean couple
369    else
370        echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
371        LMDZ_sed run.def type_ocean force
372    fi
373
374    if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
375        echo "Activate coupling to INCA, set type_trac=inca in run.def"
376        LMDZ_sed run.def type_trac inca
377    elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
378        echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
379        LMDZ_sed run.def type_trac repr
380        LMDZ_sed run.def config_inca none
381    else
382        echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
383        LMDZ_sed run.def type_trac lmdz
384        LMDZ_sed run.def config_inca none
385    fi
386
387
388    # config.def : If running with Reprobus, desactivate ok_ade, ok_aie and read_climoz
389    if [ X${config_ListOfComponents_CHM} = Xreprobus ]  ; then
390        LMDZ_sed config.def ok_ade n
391        LMDZ_sed config.def ok_aie n
392        LMDZ_sed config.def aerosol_couple n
393        LMDZ_sed config.def read_climoz 0
394    elif [ X${config_ListOfComponents_CHM} = Xinca ]; then
395        case ${CHEM} in
396            AER)
397                LMDZ_sed config.def ok_ade y
398                LMDZ_sed config.def ok_aie n
399                LMDZ_sed config.def aerosol_couple y
400                LMDZ_sed config.def read_climoz 0
401                ;;
402            NMHC_AER)
403                LMDZ_sed config.def ok_ade y
404                LMDZ_sed config.def ok_aie n
405                LMDZ_sed config.def aerosol_couple y
406                LMDZ_sed config.def read_climoz 0
407                ;;
408            GES)
409                LMDZ_sed config.def ok_ade n
410                LMDZ_sed config.def ok_aie n
411                LMDZ_sed config.def aerosol_couple n
412                LMDZ_sed config.def read_climoz 0
413        esac
414
415    else
416        LMDZ_sed config.def ok_ade y
417        LMDZ_sed config.def ok_aie y
418        LMDZ_sed config.def aerosol_couple n
419        LMDZ_sed config.def read_climoz 2
420    fi
421
422    # guide.def : Activate nudging if ok_guide=y set in lmdz.card
423    if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
424        LMDZ_sed guide.def ok_guide  ${lmdz_UserChoices_ok_guide}
425    else
426        LMDZ_sed guide.def ok_guide n
427    fi
428
429    ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
430    ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
431    if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
432        awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
433        IGCM_sys_Mv gcm.def.tmp gcm.def
434        echo
435        IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
436        echo
437        cat gcm.def
438        ByPass_hgardfou_teta=n
439        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
440    fi
441
442    ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
443    ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
444    if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
445        sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
446        IGCM_sys_Mv gcm.def.tmp gcm.def
447        echo
448        IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
449        echo
450        cat gcm.def
451        ByPass_hgardfou_mats=n
452        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
453    fi
454
455    if ( ${FirstInitialize} ) ; then
456        if [ -f start.nc ] && [ -f startphy.nc ] ; then
457            # The restart files already exist. They have been copied from a previous run or from a CREATE job
458            echo "Restart files for LMDZ have been copied from a previous run"
459        elif [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
460            # Do nothing because it is the program for creating restart files that is running and not LMDZ
461            echo "create_etat0_limit.e will create initial start files"
462        else
463            # Restart files have to be created
464            echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ"
465            if [ ${DRYRUN} -le 2 ] ; then
466                ##-- suppression of ozone file construction --
467                cp config.def config.def.save
468                LMDZ_sed config.def read_climoz 0
469                IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/.
470                if [ ${DRYRUN} -le 1 ] ; then
471                    ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e
472                    IGCM_sys_Put_Out start.nc    ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc
473                    IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc
474                fi
475                IGCM_sys_Mv config.def.save config.def
476            else
477                echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated"
478                echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack
479            fi
480        fi
481    fi
482
483    IGCM_debug_PopStack "ATM_Update"
484}
485
486#-----------------------------------
487function ATM_Finalize
488{
489    IGCM_debug_PushStack "ATM_Finalize"
490
491    # If the file exist, copy Bands_ file to PARAM/ in submit directory. This file will be used for the simulation.
492    # Copy also the same file into ATM/Restart at ARCHIVE directory for backup.
493    if [ -f Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ] ; then
494      if [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] ; then
495        IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
496        IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
497      elif [ ${CumulPeriod} -eq 1 ] && [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
498        # Special case : first period and no adjust => Save bands file with suffix _0
499        IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
500        IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
501      fi
502    fi
503
504    # Add special treatement for CARBON CYCLE
505    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
506        ATM_Carbon_Finalize
507    fi
508
509    echo FINALIZE ATM !
510
511    IGCM_debug_PopStack "ATM_Finalize"
512}
513
514
515
516function ATM_Carbon_Update
517{
518    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
519
520    IGCM_debug_PushStack "ATM_Carbon_Update"
521
522    typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
523    typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
524    typeset PathCO2log
525    typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
526   
527    if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
528        ##--Initialization of fluxes to an undefined value at the first run
529        UndefinedValueCo2=-9999
530        InitPeriodCo2=0
531        InitDateBeginCo2=${UndefinedValueCo2}
532        InitYearCo2=$(( ${year} - 1 )) 
533        InitDateEndCo2=${InitYearCo2}1231
534        fCO2_ff=${UndefinedValueCo2} 
535        CO2SBG=${UndefinedValueCo2}
536        CO2LU=${UndefinedValueCo2}
537        CO2MBG=${UndefinedValueCo2}
538        CO2_ppm_prec=${UndefinedValueCo2}
539        # Get the initial value of atmosp. pco2
540        CO2_ppm=${lmdz_UserChoices_co2_init}
541       
542        IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
543        IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
544       
545        # Save CO2 values in ExeCpuLog variable contents 5 fields
546        echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
547            gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
548                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
549       
550        # Get the path where the log file co2.log is
551        PathCO2log=${SUBMIT_DIR} 
552        # Get Previous line in co2.log
553        PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
554       
555    else
556       
557        # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
558        # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
559        #SubmitRestartPath=
560        if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
561            IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
562            PathCO2log=${config_ATM_SubmitRestartPath}
563            Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
564            PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
565           
566            IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
567            IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
568           
569            # Save Last Line of control in new co2.log file
570            InitPeriodCo2=0   
571            InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' )
572            InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' )
573            fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' )
574            CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' )
575            CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' )
576            CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' )
577            CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' )
578            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
579           
580            echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
581                gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
582                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
583        else
584           # Get restart line in co2.log
585            PathCO2log=${SUBMIT_DIR}
586            PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
587           # Get the value of atmosp. pco2 in co2.log
588            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
589        fi
590       
591    fi
592   
593    if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
594            # Modify co2_ppm in config.def only for historical run
595            # If not historical run, keep co2_ppm value set earlier by LMDZ_sed
596        LMDZ_sed config.def co2_ppm     ${CO2_ppm}
597    fi
598    IGCM_debug_PopStack "ATM_Carbon_Update"
599}
600
601
602function ATM_Carbon_Finalize
603{
604    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
605
606    IGCM_debug_PushStack "ATM_Carbon_Finalize"
607
608    typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
609   
610        # Fossil fuel emission
611    if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
612            # For Control, no fossil fuel emission :
613        fCO2_ff=0
614        echo "Fossil Fuel for control run  :" ${fCO2_ff}
615    else
616            # For historical, get the fossile fuel file :
617        fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
618        echo "Fossil Fuel for historical run  :" ${fCO2_ff}
619    fi
620   
621        # Get the value of ocean carbon flux
622    CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
623    CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" )
624    echo "Ocean carbon flux  :" ${CO2MBG}
625   
626        # Get the value of land fluxes
627    set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
628    CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" )
629    CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" )
630    CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" )
631    echo "Land carbon flux (NEP)         :" ${CO2SRF}
632    echo "LU flux          (FLUC)        :" ${CO2LU}
633    echo "Total Land carbon flux (NBP)   :" ${CO2SBG}
634   
635        # Previous CO2
636    CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
637    echo "Previous CO2  :" ${CO2_ppm_prec}
638   
639        # Formula
640    CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l )
641    echo "New CO2  :" ${CO2_ppm}
642   
643        # Save CO2 values in ExeCpuLog variable contents 5 fields
644    echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
645        gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
646                           $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
647   
648    IGCM_debug_PopStack "ATM_Carbon_Finalize"
649}
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