source: CONFIG/UNIFORM/v6/LMDZORSTRATAER_v6/GENERAL/DRIVER/lmdz.driver @ 6013

Last change on this file since 6013 was 6013, checked in by aclsce, 3 years ago
  • Reset ByPass_hgardfou_teta, ByPass_hgardfou_mats and mesh_mask in following period within the same Job.
File size: 24.4 KB
Line 
1#!/bin/ksh
2#-----------------------------------------------------------------
3function ATM_Initialize
4{
5    IGCM_debug_PushStack "ATM_Initialize"
6
7    RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}')
8
9    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39
10
11    RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
12    RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
13    RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
14    RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
15
16    ##- LMDZ physics version
17    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
18    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
19        LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
20    else
21        LMDZ_Physics=AP
22    fi
23    echo LMDZ physics version : ${LMDZ_Physics}
24
25    ##- Create_etat0_limit version
26    ##  Define variable CREATE only if it is set in lmdz.card section UserChoices.
27    ##  This variable is only used in lmdz.card to choose input files.
28    if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
29        IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
30        CREATE=${lmdz_UserChoices_CREATE}
31        echo create_etat0_limit version : ${CREATE}
32    fi
33
34
35    ## - LMDZ choice of config.def file
36    ##   ConfType must be set in lmdz.card
37    ConfType=${lmdz_UserChoices_ConfType}
38
39    ##- LMDZ output level, to be set in lmdz.card
40    if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
41        # OutLevel is not set. Take default value low.
42        OutLevel=low
43    else
44        OutLevel=${lmdz_UserChoices_OutLevel}
45    fi
46
47    ##-- Output frequency purpose ....
48    ##--  Initialisation  ....
49    ok_mensuel=.FALSE.
50    ok_journe=.FALSE.
51    ok_hf=.FALSE.
52    ok_hf3h=.FALSE.
53    ok_hf3hm=.FALSE.
54    ok_stn=.FALSE.
55
56    case ${config_UserChoices_PeriodLength} in
57        1Y|1y|1M|1m) ok_mensuel=.TRUE. ;;
58        5D|5d|1D|1d) ok_journe=.TRUE. ;;
59    esac
60
61    for frequency in ${config_ATM_WriteFrequency} ; do
62        case ${frequency} in
63            1M|1m) ok_mensuel=.TRUE. ;;
64        esac
65        case ${frequency} in
66            5D|5d|1D|1d) ok_journe=.TRUE. ;;
67        esac
68        case ${frequency} in
69            HF|hf) ok_hf=.TRUE. ;;
70        esac
71        case ${frequency} in
72            HF3h|hf3h) ok_hf3h=.TRUE. ;;
73        esac
74        case ${frequency} in
75            HF3hm|hf3hm) ok_hf3hm=.TRUE. ;;
76        esac
77        case ${frequency} in
78            STN|stn) ok_stn=.TRUE. ;;
79        esac
80    done
81
82    ##  Read LMDZ_COSP_OK in lmdz.card
83    if [ X${lmdz_UserChoices_LMDZ_COSP_OK} = Xy ] ; then
84        ##  LMDZ_COSP_OK=y, now read all other COSP variables
85        ##  Read LMDZ_COSP_monthly in lmdz.card
86        if [ X${lmdz_UserChoices_LMDZ_COSP_monthly} = Xy ] ; then
87            LMDZ_COSP_monthly=.TRUE.
88        else
89            LMDZ_COSP_monthly=.FALSE.
90        fi
91        ##  Read LMDZ_COSP_daily in lmdz.card
92        if [ X${lmdz_UserChoices_LMDZ_COSP_daily} = Xy ] ; then
93            LMDZ_COSP_daily=.TRUE.
94        else
95            LMDZ_COSP_daily=.FALSE.
96        fi
97        ##  Read LMDZ_COSP_hf in lmdz.card
98        if [ X${lmdz_UserChoices_LMDZ_COSP_hf} = Xy ] ; then
99            LMDZ_COSP_hf=.TRUE.
100        else
101            LMDZ_COSP_hf=.FALSE.
102        fi
103    else
104        # LMDZ_COSP_OK=n : All cosp output are deactivated
105        LMDZ_COSP_monthly=.FALSE.
106        LMDZ_COSP_daily=.FALSE.
107        LMDZ_COSP_hf=.FALSE.
108    fi 
109
110    ##  Read LMDZ_NMC_monthly in lmdz.card
111    if [ X${lmdz_UserChoices_LMDZ_NMC_monthly} = Xy ] ; then
112        LMDZ_NMC_monthly=.TRUE.
113    else
114        LMDZ_NMC_monthly=.FALSE.
115    fi
116   
117    ## Read LMDZ_NMC_daily in lmdz.card
118    if [ X${lmdz_UserChoices_LMDZ_NMC_daily} = Xy ] ; then
119        LMDZ_NMC_daily=.TRUE.
120    else
121        LMDZ_NMC_daily=.FALSE.
122    fi
123   
124    ## Read LMDZ_NMC_hf in lmdz.card
125    if [ X${lmdz_UserChoices_LMDZ_NMC_hf} = Xy ] ; then
126        LMDZ_NMC_hf=.TRUE.
127    else
128        LMDZ_NMC_hf=.FALSE.
129    fi
130   
131
132    IGCM_debug_PopStack "ATM_Initialize"
133}
134
135#-----------------------------------------------------------------
136function ATM_Update
137{
138    IGCM_debug_PushStack "ATM_Update"
139
140    ##-- GHG forcing :
141    ##   If forcing file exist in run directory, read values for the current year
142    ##   and set in config.def. If not use the default value set in config.def
143
144    # Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
145    if [ -f SOLARANDVOLCANOES.txt ] ; then
146        value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
147        if [ X"${value}" = X ] ; then
148            # The grep returned empty variable, stop execution
149            IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
150            IGCM_debug_Verif_Exit
151        fi
152    else
153        value=DEFAULT
154    fi
155    IGCM_comp_modifyDefFile nonblocker config.def solaire $value
156
157
158    # Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
159    if [ -f CO2.txt ] ; then
160        value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
161        if [ X"${value}" = X ] ; then
162            # The grep returned empty variable, stop execution
163            IGCM_debug_Exit "The file CO2.txt do not contain the current year."
164            IGCM_debug_Verif_Exit
165        fi
166    else
167        value=DEFAULT
168    fi
169    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
170
171
172    # Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
173    if [ -f CH4.txt ] ; then
174        value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
175        if [ X"${value}" = X ] ; then
176            # The grep returned empty variable, stop execution
177            IGCM_debug_Exit "The file CH4.txt do not contain the current year."
178            IGCM_debug_Verif_Exit
179        fi
180    else
181        value=DEFAULT
182    fi
183    IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
184
185
186    # Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
187    if [ -f N2O.txt ] ; then
188        value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
189        if [ X"${value}" = X ] ; then
190            # The grep returned empty variable, stop execution
191            IGCM_debug_Exit "The file N2O.txt do not contain the current year."
192            IGCM_debug_Verif_Exit
193        fi
194    else
195        value=DEFAULT
196    fi
197    IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
198
199    # Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
200    if [ -f CFC11.txt ] ; then
201        value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
202        if [ X"${value}" = X ] ; then
203            # The grep returned empty variable, stop execution
204            IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
205            IGCM_debug_Verif_Exit
206        fi
207    else
208        value=DEFAULT
209    fi
210    IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
211
212
213    # Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
214    if [ -f CFC12.txt ] ; then
215        value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
216        if [ X"${value}" = X ] ; then
217            # The grep returned empty variable, stop execution
218            IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
219            IGCM_debug_Verif_Exit
220        fi
221    else
222        value=DEFAULT
223    fi
224    IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
225
226
227    ## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
228    LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
229    IGCM_debug_Print 3 "LMDZ_t_coupl "   ${LMDZ_t_coupl}
230    IGCM_comp_modifyDefFile nonblocker config.def t_coupl   ${LMDZ_t_coupl} 
231
232    ##-- Add special treatement for CARBON CYCLE
233    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
234        ATM_Carbon_Update
235    fi
236
237
238    ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
239    ##   COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
240    if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] &&  [ ${year} -ge 1979 ]) ; then
241        LMDZ_COSP_daily=.TRUE.
242    fi
243
244    ## Modifiy
245    IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled ${ok_mensuel}
246   
247    IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled ${ok_journe}
248   
249    if [ X${OutLevel} = Xlow ] || [ X${OutLevel} = Xmedium ] ; then
250        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 2
251    else
252        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 5
253    fi
254   
255    IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled ${ok_hf}
256   
257    if [ X${OutLevel} = Xlow ] ; then
258        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 5
259    elif [ X${OutLevel} = Xmedium ] ; then
260        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 6
261    elif [ X${OutLevel} = Xhigh ] ; then
262        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 7
263    fi
264       
265    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h}
266    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm}
267
268    IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled ${ok_stn}
269
270    IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled ${LMDZ_NMC_monthly}
271    IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled ${LMDZ_NMC_daily}
272    IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled ${LMDZ_NMC_hf}
273   
274    IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled ${LMDZ_COSP_monthly}
275    IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled ${LMDZ_COSP_daily}
276    IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled ${LMDZ_COSP_hf}
277
278    # Activate the histstrataer output file only for configuration with interactive stratospheric aersols
279    # done by setting the key word LMDZ_strataer=y in lmdz.card
280    if [ X${lmdz_UserChoices_LMDZ_strataer} = Xy ] ; then
281        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .TRUE.
282    else
283        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .FALSE.
284    fi
285
286
287    ## run.def parameters
288
289
290    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
291    if [ ${CumulPeriod} -eq 1 ] ; then
292        IGCM_comp_modifyDefFile blocker run.def raz_date  1
293    else
294        IGCM_comp_modifyDefFile blocker run.def raz_date  0
295    fi
296
297    ##-- Calendar type for LMDZ and create_etat0_limit
298    case ${config_UserChoices_CalendarType} in
299        leap|gregorian)
300            IGCM_comp_modifyDefFile blocker run.def calend  gregorian ;;
301        noleap)
302            IGCM_comp_modifyDefFile blocker run.def calend  earth_365d ;;
303        360d)
304            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
305        *)
306            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
307    esac
308
309    IGCM_comp_modifyDefFile blocker run.def dayref    ${InitDay}
310    IGCM_comp_modifyDefFile blocker run.def nday      ${PeriodLengthInDays}
311
312    # Set anneeref different for gcm and ce0l
313    # Test if executable create_etat0_limit is present and lmdz.x is not present
314    if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
315        # for case ce0l : always take current year
316        IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
317
318        # Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
319        # In more recent versions of LMDZ, this will not be needed.
320        IGCM_comp_modifyDefFile force   run.def use_filtre_fft n
321    else
322        # for case gcm : take first year of simulation
323        IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
324    fi
325
326    ## Determine from the variable ListOfComponents in config.card coupling to external models
327    ## and set corresponding parameters in run.def
328    echo ListOfComponents now running : ${config_ListOfComponents[*]}
329
330    if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
331        echo "Activate ORCHIDEE, set VEGET=y in run.def"
332        IGCM_comp_modifyDefFile blocker run.def VEGET y
333    else
334        echo "No ORCHIDEE, set VEGET=n in run.def"
335        IGCM_comp_modifyDefFile blocker run.def VEGET n
336    fi
337
338    if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
339        echo "Activate coupling to ocean, set type_ocean=couple in run.def"
340        IGCM_comp_modifyDefFile blocker run.def type_ocean couple
341    else
342        echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
343        IGCM_comp_modifyDefFile blocker run.def type_ocean force
344    fi
345
346    if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
347        echo "Activate coupling to INCA, set type_trac=inca in run.def"
348        IGCM_comp_modifyDefFile blocker run.def type_trac inca
349    elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
350        echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
351        IGCM_comp_modifyDefFile blocker run.def type_trac repr
352        IGCM_comp_modifyDefFile blocker run.def config_inca none
353    else
354        if [ X${lmdz_UserChoices_LMDZ_strataer} = Xy ] ; then
355            echo "No coupling to chemistry model but it is a LMDZ STRATAER configuration, set type_trac=coag in run.def"
356            IGCM_comp_modifyDefFile blocker run.def type_trac coag
357            IGCM_comp_modifyDefFile blocker run.def config_inca none
358        else
359            echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
360            IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
361            IGCM_comp_modifyDefFile blocker run.def config_inca none
362        fi
363    fi
364
365
366    # config.def : Activate direct radiative effect if ok_ade=y
367    if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
368        IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
369    else
370        IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
371    fi 
372
373    # config.def : Activate indirect radiative effect if ok_aie=y
374    if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
375        IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
376    else
377        IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
378    fi 
379
380    # config.def : Activate online aerosol coupled model if aerosol_couple=y
381    if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
382        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
383    else
384        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
385    fi 
386
387    # config.def : Activate reading of ozone in climatology if read_climoz=2
388    if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
389        IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
390    else
391        IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0     
392    fi 
393
394    # config.def : Choose aerosol use in radiative effect
395    #  type of coupled aerosol =1 (default) =2 => bc  only =3 => pom only =4 => seasalt only
396    # =5 => dust only =6 => all aerosol   
397    if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
398        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
399    else
400        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
401    fi 
402
403    # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
404    if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
405        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
406    else
407        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
408    fi 
409
410    # config.def : Activate COSP
411    if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then
412        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK}
413    else
414        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n
415    fi 
416
417    # config.def : Modify parameter pmagic if it is set in lmdz.card
418    if [ ! X${lmdz_UserChoices_pmagic} = X ]; then
419        IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic}
420    else
421        # Take default value set in config.def
422        IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT
423    fi 
424
425    # guide.def : Activate nudging if ok_guide=y set in lmdz.card
426    if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
427        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide  ${lmdz_UserChoices_ok_guide}
428    else
429        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
430    fi
431
432    ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
433    ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
434    if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
435        awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
436        IGCM_sys_Mv gcm.def.tmp gcm.def
437        echo
438        IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
439        echo
440        cat gcm.def
441        ByPass_hgardfou_teta=n
442    export lmdz_UserChoices_ByPass_hgardfou_teta=n
443        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
444    fi
445
446    ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
447    ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
448    if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
449        sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
450        IGCM_sys_Mv gcm.def.tmp gcm.def
451        echo
452        IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
453        echo
454        cat gcm.def
455        ByPass_hgardfou_mats=n
456        export lmdz_UserChoices_ByPass_hgardfou_mats=n
457        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
458    fi
459
460    # Add include of LMDZ context in iodef.xml
461    # In iodef.xml add on next line after "COMPONENT CONTEXT"
462    #  <context id="LMDZ" src="./context_lmdz.xml"/>
463    echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
464    cp iodef.xml iodef.xml.tmp
465    sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
466    rm iodef.xml.tmp add.tmp
467
468    #Long Name as global attribute (if LongName is not empty)
469    if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
470        listfile=$(ls file_def*lmdz.xml)
471        echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp
472        for file in ${listfile}
473        do
474            cp ${file} ${file}.tmp
475            sed -e "/<file id/r add.tmp" \
476                ${file}.tmp > ${file}
477            rm ${file}.tmp
478        done
479        rm add.tmp
480    fi
481           
482    IGCM_debug_PopStack "ATM_Update"
483}
484
485#-----------------------------------
486function ATM_Finalize
487{
488    IGCM_debug_PushStack "ATM_Finalize"
489
490    # Add special treatement for CARBON CYCLE
491    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
492        ATM_Carbon_Finalize
493    fi
494
495    echo FINALIZE ATM !
496
497    IGCM_debug_PopStack "ATM_Finalize"
498}
499
500
501
502function ATM_Carbon_Update
503{
504    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
505
506    IGCM_debug_PushStack "ATM_Carbon_Update"
507
508    typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
509    typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
510    typeset PathCO2log
511    typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
512   
513    if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
514        ##--Initialization of fluxes to an undefined value at the first run
515        UndefinedValueCo2=-9999
516        InitPeriodCo2=0
517        InitDateBeginCo2=${UndefinedValueCo2}
518        InitYearCo2=$(( ${year} - 1 )) 
519        InitDateEndCo2=${InitYearCo2}1231
520        fCO2_ff=${UndefinedValueCo2} 
521        CO2SBG=${UndefinedValueCo2}
522        CO2LU=${UndefinedValueCo2}
523        CO2MBG=${UndefinedValueCo2}
524        CO2_ppm_prec=${UndefinedValueCo2}
525        # Get the initial value of atmosp. pco2
526        CO2_ppm=${lmdz_UserChoices_co2_init}
527       
528        IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
529        IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
530       
531        # Save CO2 values in ExeCpuLog variable contents 5 fields
532        echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
533            gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
534                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
535       
536        # Get the path where the log file co2.log is
537        PathCO2log=${SUBMIT_DIR} 
538        # Get Previous line in co2.log
539        PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
540       
541    else
542       
543        # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
544        # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
545        #SubmitRestartPath=
546        if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
547            IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
548            PathCO2log=${config_ATM_SubmitRestartPath}
549            Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
550            PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
551           
552            IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
553            IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
554           
555            # Save Last Line of control in new co2.log file
556            InitPeriodCo2=0   
557            InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' )
558            InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' )
559            fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' )
560            CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' )
561            CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' )
562            CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' )
563            CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' )
564            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
565           
566            echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
567                gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
568                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
569        else
570           # Get restart line in co2.log
571            PathCO2log=${SUBMIT_DIR}
572            PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
573           # Get the value of atmosp. pco2 in co2.log
574            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
575        fi
576       
577    fi
578   
579    if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
580        # Modify co2_ppm in config.def only for historical run
581        # If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile
582        IGCM_comp_modifyDefFile force config.def co2_ppm     ${CO2_ppm}
583    fi
584    IGCM_debug_PopStack "ATM_Carbon_Update"
585}
586
587
588function ATM_Carbon_Finalize
589{
590    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
591
592    IGCM_debug_PushStack "ATM_Carbon_Finalize"
593
594    typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
595   
596        # Fossil fuel emission
597    if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
598            # For Control, no fossil fuel emission :
599        fCO2_ff=0
600        echo "Fossil Fuel for control run  :" ${fCO2_ff}
601    else
602            # For historical, get the fossile fuel file :
603        fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
604        echo "Fossil Fuel for historical run  :" ${fCO2_ff}
605    fi
606   
607        # Get the value of ocean carbon flux
608    CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
609    CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" )
610    echo "Ocean carbon flux  :" ${CO2MBG}
611   
612        # Get the value of land fluxes
613    set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
614    CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" )
615    CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" )
616    CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" )
617    echo "Land carbon flux (NEP)         :" ${CO2SRF}
618    echo "LU flux          (FLUC)        :" ${CO2LU}
619    echo "Total Land carbon flux (NBP)   :" ${CO2SBG}
620   
621        # Previous CO2
622    CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
623    echo "Previous CO2  :" ${CO2_ppm_prec}
624   
625        # Formula
626    CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l )
627    echo "New CO2  :" ${CO2_ppm}
628   
629        # Save CO2 values in ExeCpuLog variable contents 5 fields
630    echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
631        gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
632                           $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
633   
634    IGCM_debug_PopStack "ATM_Carbon_Finalize"
635}
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