source: CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/file_def_nemo-pisces.xml @ 3512

Last change on this file since 3512 was 3512, checked in by cetlod, 4 years ago

Update NEMO_v6 configuration

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1    <!-- $id$ -->
2   
3    <!--
4
5============================================================================================================
6=                                           output files definition                                        =
7=                                            Define your own files ocean biogeochemistry                                         =
8=                                         put the variables you want...                                    =
9============================================================================================================
10    -->
11   
12    <file_definition type="one_file" name="@expname@_@freq@" sync_freq="1d" min_digits="4">
13   
14      <file_group id="1ts_pis" output_freq="1ts"  output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
15      <file_group id="1h_pis" output_freq="1h"  output_level="10" enabled=".TRUE."/> <!-- 1h files -->
16      <file_group id="2h_pis" output_freq="2h"  output_level="10" enabled=".TRUE."/> <!-- 2h files -->
17      <file_group id="3h_pis" output_freq="3h"  output_level="10" enabled=".TRUE."/> <!-- 3h files -->     
18      <file_group id="4h_pis" output_freq="4h"  output_level="10" enabled=".TRUE."/> <!-- 4h files -->
19      <file_group id="6h_pis" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->     
20      <file_group id="1d_pis" output_freq="1d"  output_level="10" enabled="_AUTO_" >  <!-- 1d files -->   
21 
22        <file id="file20" name_suffix="_bioscalar" description="pisces sms variables" >
23          <field field_ref="tdenit"   name="tdenit"   grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
24          <field field_ref="tnfix"    name="tnfix"    grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
25          <field field_ref="tcflx"    name="tcflx"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
26          <field field_ref="tcflxcum" name="tcflxcum" grid_ref="grid_1point" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field>
27          <field field_ref="tcexp"    name="tcexp"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field>
28          <field field_ref="tintpp"   name="tintpp"   grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field>
29          <field field_ref="pno3tot"  name="pno3tot"  grid_ref="grid_1point" unit="umolN"  operation="instant" > pno3tot * 16. / 122. * 1e6 </field>
30          <field field_ref="ppo4tot"  name="ppo4tot"  grid_ref="grid_1point" unit="umolP"  operation="instant" > ppo4tot * 1. / 122. * 1e6 </field>
31          <field field_ref="psiltot"  name="psiltot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > psiltot * 1e6  </field>
32          <field field_ref="palktot"  name="palktot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > palktot * 1e6  </field>
33          <field field_ref="pfertot"  name="pfertot"  grid_ref="grid_1point" unit="nmolFe" operation="instant" > pfertot * 1e9  </field>
34        </file>
35
36      </file_group> 
37
38      <file_group id="5d_pis" output_freq="5d"  output_level="10" enabled=".TRUE."/>  <!-- 5d files -->   
39       
40      <file_group id="1m_pis" output_freq="1mo" output_level="10" enabled="_AUTO_"> <!-- real monthly files -->
41
42       <file id="file21" name_suffix="_ptrc_T" description="pisces sms variables" >
43          <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1mo" > @DIC_E3T / @e3t </field>
44          <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1mo" > @Alkalini_E3T / @e3t </field>
45          <field field_ref="O2"        name="O2"       operation="average" freq_op="1mo" > @O2_E3T / @e3t </field>
46          <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1mo" > @CaCO3_E3T / @e3t </field>
47          <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1mo" > @PO4_E3T / @e3t </field>
48          <field field_ref="POC"       name="POC"      operation="average" freq_op="1mo" > @POC_E3T / @e3t </field>
49          <field field_ref="Si"        name="Si"       operation="average" freq_op="1mo" > @Si_E3T / @e3t </field>
50          <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1mo" > @PHY_E3T / @e3t </field>
51          <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1mo" > @ZOO_E3T / @e3t </field>
52          <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1mo" > @DOC_E3T / @e3t </field>
53          <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1mo" > @PHY2_E3T / @e3t </field>
54          <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1mo" > @ZOO2_E3T / @e3t </field>
55          <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1mo" > @DSi_E3T / @e3t </field>
56          <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1mo" > @Fer_E3T / @e3t </field>
57          <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1mo" > @BFe_E3T / @e3t </field>
58          <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1mo" > @GOC_E3T / @e3t </field>
59          <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1mo" > @SFe_E3T / @e3t </field>
60          <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1mo" > @DFe_E3T / @e3t </field>
61          <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1mo" > @GSi_E3T / @e3t </field>
62          <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1mo" > @NFe_E3T / @e3t </field>
63          <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1mo" > @NCHL_E3T / @e3t </field>
64          <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1mo" > @DCHL_E3T / @e3t </field>
65          <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1mo" > @NO3_E3T / @e3t </field>
66          <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1mo" > @NH4_E3T / @e3t </field>
67    </file>
68
69   <file id="file22" name_suffix="_diad_T" description="additional pisces diagnostics" >
70        <field field_ref="PH"         name="PH" />
71        <field field_ref="CO3"        name="CO3" />
72        <field field_ref="CO3sat"     name="CO3sat" />
73        <field field_ref="PAR"        name="PAR"   />
74        <field field_ref="PCAL"       name="PCAL"   />
75        <field field_ref="Cflx"       name="Cflx"  />
76        <field field_ref="Oflx"       name="Oflx"  />
77        <field field_ref="Dpco2"      name="Dpco2"   />
78        <field field_ref="Dpo2"       name="Dpo2"   />
79        <field field_ref="Heup"      name="Heup"  />
80        <field field_ref="Irondep"   name="Irondep"  />
81        <field field_ref="Ironsed"   name="Ironsed"  />
82        <field field_ref="Nfix"      name="Nfix"  />
83        <field field_ref="LNnut"     name="LNnut"  />
84        <field field_ref="LDnut"     name="LDnut"  />
85        <field field_ref="LNFe"      name="LNFe"  />
86        <field field_ref="LDFe"      name="LDFe"  />
87        <field field_ref="LNlight"   name="LNlight"  />
88        <field field_ref="LDlight"   name="LDlight"  />
89        <field field_ref="TPP"       name="TPP"  />
90        <field field_ref="INTPP"     name="INTPP"  />
91        <field field_ref="INTPNEW"     name="INTPNEW"  />
92        <field field_ref="TPNEW"      name="TPNEW"  />
93        <field field_ref="EPC100"    name="EPC100"  />
94        <field field_ref="EPFE100"   name="EPFE100"  />
95        <field field_ref="EPSI100"   name="EPSI100"  />
96        <field field_ref="EPCAL100"  name="EPCAL100"  />
97    </file>
98
99
100      <file id="file23" name_suffix="_bioscalar" description="pisces sms variables" >
101          <field field_ref="tdenit"   name="tdenit"   grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
102          <field field_ref="tnfix"    name="tnfix"    grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
103          <field field_ref="tcflx"    name="tcflx"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
104          <field field_ref="tcflxcum" name="tcflxcum" grid_ref="grid_1point" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field>
105          <field field_ref="tcexp"    name="tcexp"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field>
106          <field field_ref="tintpp"   name="tintpp"   grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field>
107          <field field_ref="pno3tot"  name="pno3tot"  grid_ref="grid_1point" unit="umolN"  operation="instant" > pno3tot * 16. / 122. * 1e6 </field>
108          <field field_ref="ppo4tot"  name="ppo4tot"  grid_ref="grid_1point" unit="umolP"  operation="instant" > ppo4tot * 1. / 122. * 1e6 </field>
109          <field field_ref="psiltot"  name="psiltot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > psiltot * 1e6  </field>
110          <field field_ref="palktot"  name="palktot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > palktot * 1e6  </field>
111          <field field_ref="pfertot"  name="pfertot"  grid_ref="grid_1point" unit="nmolFe" operation="instant" > pfertot * 1e9  </field>
112        </file>
113
114
115      </file_group>
116
117      <file_group id="2m_pis" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
118      <file_group id="3m_pis" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
119      <file_group id="4m_pis" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
120      <file_group id="6m_pis" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
121
122
123      <file_group id="1y_pis"  output_freq="1y" output_level="10" enabled="_AUTO_"> <!-- real yearly files -->
124
125 
126       <file id="file24" name_suffix="_ptrc_T" description="pisces sms variables" >
127          <field field_ref="DIC"       name="DIC"      operation="average" freq_op="1y" > @DIC_E3T / @e3t </field>
128          <field field_ref="Alkalini"  name="Alkalini" operation="average" freq_op="1y" > @Alkalini_E3T / @e3t </field>
129          <field field_ref="O2"        name="O2"       operation="average" freq_op="1y" > @O2_E3T / @e3t </field>
130          <field field_ref="CaCO3"     name="CaCO3"    operation="average" freq_op="1y" > @CaCO3_E3T / @e3t </field>
131          <field field_ref="PO4"       name="PO4"      operation="average" freq_op="1y" > @PO4_E3T / @e3t </field>
132          <field field_ref="POC"       name="POC"      operation="average" freq_op="1y" > @POC_E3T / @e3t </field>
133          <field field_ref="Si"        name="Si"       operation="average" freq_op="1y" > @Si_E3T / @e3t </field>
134          <field field_ref="PHY"       name="PHY"      operation="average" freq_op="1y" > @PHY_E3T / @e3t </field>
135          <field field_ref="ZOO"       name="ZOO"      operation="average" freq_op="1y" > @ZOO_E3T / @e3t </field>
136          <field field_ref="DOC"       name="DOC"      operation="average" freq_op="1y" > @DOC_E3T / @e3t </field>
137          <field field_ref="PHY2"      name="PHY2"     operation="average" freq_op="1y" > @PHY2_E3T / @e3t </field>
138          <field field_ref="ZOO2"      name="ZOO2"     operation="average" freq_op="1y" > @ZOO2_E3T / @e3t </field>
139          <field field_ref="DSi"       name="DSi"      operation="average" freq_op="1y" > @DSi_E3T / @e3t </field>
140          <field field_ref="Fer"       name="Fer"      operation="average" freq_op="1y" > @Fer_E3T / @e3t </field>
141          <field field_ref="BFe"       name="BFe"      operation="average" freq_op="1y" > @BFe_E3T / @e3t </field>
142          <field field_ref="GOC"       name="GOC"      operation="average" freq_op="1y" > @GOC_E3T / @e3t </field>
143          <field field_ref="SFe"       name="SFe"      operation="average" freq_op="1y" > @SFe_E3T / @e3t </field>
144          <field field_ref="DFe"       name="DFe"      operation="average" freq_op="1y" > @DFe_E3T / @e3t </field>
145          <field field_ref="GSi"       name="GSi"      operation="average" freq_op="1y" > @GSi_E3T / @e3t </field>
146          <field field_ref="NFe"       name="NFe"      operation="average" freq_op="1y" > @NFe_E3T / @e3t </field>
147          <field field_ref="NCHL"      name="NCHL"     operation="average" freq_op="1y" > @NCHL_E3T / @e3t </field>
148          <field field_ref="DCHL"      name="DCHL"     operation="average" freq_op="1y" > @DCHL_E3T / @e3t </field>
149          <field field_ref="NO3"       name="NO3"      operation="average" freq_op="1y" > @NO3_E3T / @e3t </field>
150          <field field_ref="NH4"       name="NH4"      operation="average" freq_op="1y" > @NH4_E3T / @e3t </field>
151    </file>
152
153   <file id="file25" name_suffix="_diad_T" description="additional pisces diagnostics" >
154        <field field_ref="PH"         name="PH" />
155        <field field_ref="CO3"        name="CO3" />
156        <field field_ref="CO3sat"     name="CO3sat" />
157        <field field_ref="PAR"        name="PAR"   />
158        <field field_ref="PCAL"       name="PCAL"   />
159        <field field_ref="Cflx"       name="Cflx"  />
160        <field field_ref="Oflx"       name="Oflx"  />
161        <field field_ref="Dpco2"      name="Dpco2"   />
162        <field field_ref="Dpo2"       name="Dpo2"   />
163        <field field_ref="Heup"      name="Heup"  />
164        <field field_ref="Irondep"   name="Irondep"  />
165        <field field_ref="Ironsed"   name="Ironsed"  />
166        <field field_ref="Nfix"      name="Nfix"  />
167        <field field_ref="LNnut"     name="LNnut"  />
168        <field field_ref="LDnut"     name="LDnut"  />
169        <field field_ref="LNFe"      name="LNFe"  />
170        <field field_ref="LDFe"      name="LDFe"  />
171        <field field_ref="LNlight"   name="LNlight"  />
172        <field field_ref="LDlight"   name="LDlight"  />
173        <field field_ref="TPP"       name="TPP"  />
174        <field field_ref="INTPP"     name="INTPP"  />
175        <field field_ref="INTPNEW"     name="INTPNEW"  />
176        <field field_ref="TPNEW"      name="TPNEW"  />
177        <field field_ref="EPC100"    name="EPC100"  />
178        <field field_ref="EPFE100"   name="EPFE100"  />
179        <field field_ref="EPSI100"   name="EPSI100"  />
180        <field field_ref="EPCAL100"  name="EPCAL100"  />
181        <field field_ref="xfracal"   name="xfracal"  />
182    </file>
183
184      <file id="file26" name_suffix="_bioscalar" description="pisces sms variables" >
185          <field field_ref="tdenit"   name="tdenit"   grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
186          <field field_ref="tnfix"    name="tnfix"    grid_ref="grid_1point" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
187          <field field_ref="tcflx"    name="tcflx"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
188          <field field_ref="tcflxcum" name="tcflxcum" grid_ref="grid_1point" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field>
189          <field field_ref="tcexp"    name="tcexp"    grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field>
190          <field field_ref="tintpp"   name="tintpp"   grid_ref="grid_1point" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field>
191          <field field_ref="pno3tot"  name="pno3tot"  grid_ref="grid_1point" unit="umolN"  operation="instant" > pno3tot * 16. / 122. * 1e6 </field>
192          <field field_ref="ppo4tot"  name="ppo4tot"  grid_ref="grid_1point" unit="umolP"  operation="instant" > ppo4tot * 1. / 122. * 1e6 </field>
193          <field field_ref="psiltot"  name="psiltot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > psiltot * 1e6  </field>
194          <field field_ref="palktot"  name="palktot"  grid_ref="grid_1point" unit="umolC"  operation="instant" > palktot * 1e6  </field>
195          <field field_ref="pfertot"  name="pfertot"  grid_ref="grid_1point" unit="nmolFe" operation="instant" > pfertot * 1e9  </field>
196    </file>
197
198       <file id="file27" name_suffix="_age" description="Age Inert tracer" >
199          <field field_ref="Age"       name="Age"      operation="average" freq_op="1y" > @Age_E3T / @e3t </field>
200      </file>
201
202      </file_group>
203
204      <file_group id="2y_pis"  output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
205      <file_group id="5y_pis"  output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
206      <file_group id="10y_pis" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
207
208   </file_definition>
209
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