source: CONFIG/UNIFORM/v7/IPSLCM7/GENERAL/DRIVER/lmdz.driver @ 6346

Last change on this file since 6346 was 6346, checked in by cetlod, 8 months ago

IPSLCM7_WORK : 1st step of coupling DYNAMICO-LMDZ-ORCHIDEE-NEMO4.2 + Oasis3-mct.5.0
File size: 29.3 KB
Line 
1#!/bin/ksh
2#-----------------------------------------------------------------
3function ATM_Initialize
4{
5    IGCM_debug_PushStack "ATM_Initialize"
6
7
8    # Define the resolution only if the composant ICO for DYNAMICO is not set in config.card
9    if [ X${config_ListOfComponents_ICO} = X ] ; then
10
11        # Read the resolution from the variables ResolAtm set in config.card UserChoices section or from .resol file
12        if [ X$ResolAtm != X ] ; then
13            # ResolAtm is set in config.card
14            RESOL_ATM_3D=${ResolAtm}
15        elif [ -f ${SUBMIT_DIR}/../.resol ] ; then
16            # ResolAtm was not set in config.card, try to read .resol file
17            eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39
18        else
19            IGCM_debug_Exit "ResolAtm is not set in config.card and the .resol file does not exist."
20            IGCM_debug_Verif_Exit
21        fi
22       
23        RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
24        RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
25        RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
26        RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
27        RESOL_ATM=LMD${RESOL_ATM_X}${RESOL_ATM_Y}
28
29        IGCM_debug_Print 1 "The atomsopheric resolution is ${RESOL_ATM_3D} " 
30    else
31        RESOL_ATM_Z=${dynamico_UserChoices_RESOL_ATM_Z}
32        RESOL_NBP=${dynamico_UserChoices_RESOL_NBP}
33    RESOL_ATM="nbp${RESOL_NBP}"
34    fi
35
36    ##- LMDZ physics version
37    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
38    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
39        LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
40    else
41        LMDZ_Physics=AP
42    fi
43    echo LMDZ physics version : ${LMDZ_Physics}
44
45    ##- Create_etat0_limit version
46    ##  Define variable CREATE only if it is set in lmdz.card section UserChoices.
47    ##  This variable is only used in lmdz.card to choose input files.
48    if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
49        IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
50        CREATE=${lmdz_UserChoices_CREATE}
51        echo create_etat0_limit version : ${CREATE}
52    fi
53
54
55    ## - LMDZ choice of config.def file
56    ##   ConfType must be set in lmdz.card
57    ConfType=${lmdz_UserChoices_ConfType}
58
59    IGCM_debug_PopStack "ATM_Initialize"
60}
61
62#-----------------------------------------------------------------
63function ATM_Update
64{
65    IGCM_debug_PushStack "ATM_Update"
66
67    ##-- GHG forcing :
68    ##   If forcing file exist in run directory, read values for the current year
69    ##   and set in config.def. If not use the default value set in config.def
70
71    # Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
72    IGCM_debug_Print 1 "Note that the solaire parameter is here below changed but it is only used by LMDZ for old physics(AP and NPv3.2)"
73    IGCM_debug_Print 1 "For newer physics with iflag_rrtm=1 and ok_suntime_rrtm=y, the solar constant is instead taken from solarforcing.nc file"
74    if [ -f SOLARANDVOLCANOES.txt ] ; then
75        value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
76        if [ X"${value}" = X ] ; then
77            # The grep returned empty variable, stop execution
78            IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
79            IGCM_debug_Verif_Exit
80        fi
81    else
82        value=DEFAULT
83    fi
84    IGCM_comp_modifyDefFile nonblocker config.def solaire $value
85
86    # Read value for eccentricity from file Eccentricity.txt. If file not existing, take DEFAULT value from file.
87    if [ -f Eccentricity.txt ] ; then
88        value=`grep Annee_${year} Eccentricity.txt | awk -F= '{print $2}'`
89        if [ X"${value}" = X ] ; then
90            # The grep returned empty variable, stop execution
91            IGCM_debug_Exit "The file Eccentricity.txt do not contain the current year."
92            IGCM_debug_Verif_Exit
93        fi
94    else
95        value=DEFAULT
96    fi
97    IGCM_comp_modifyDefFile nonblocker config.def R_ecc $value
98
99    # Read value for obliquity from file Obliquity.txt. If file not existing, take DEFAULT value from file.
100    if [ -f Obliquity.txt ] ; then
101        value=`grep Annee_${year} Obliquity.txt | awk -F= '{print $2}'`
102        if [ X"${value}" = X ] ; then
103            # The grep returned empty variable, stop execution
104            IGCM_debug_Exit "The file Obliquity.txt do not contain the current year."
105            IGCM_debug_Verif_Exit
106        fi
107    else
108        value=DEFAULT
109    fi
110    IGCM_comp_modifyDefFile nonblocker config.def R_incl $value
111
112    # Read value for perihelie from file Perihelie.txt. If file not existing, take DEFAULT value from file.
113    if [ -f Perihelie.txt ] ; then
114        value=`grep Annee_${year} Perihelie.txt | awk -F= '{print $2}'`
115        if [ X"${value}" = X ] ; then
116            # The grep returned empty variable, stop execution
117            IGCM_debug_Exit "The file Perihelie.txt do not contain the current year."
118            IGCM_debug_Verif_Exit
119        fi
120    else
121        value=DEFAULT
122    fi
123    IGCM_comp_modifyDefFile nonblocker config.def R_peri $value
124
125    # Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
126    # Calculate co2_ppm_per as co2_ppm*4.
127    if [ -f CO2.txt ] ; then
128        value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
129        if [ X"${value}" = X ] ; then
130            # The grep returned empty variable, stop execution
131            IGCM_debug_Exit "The file CO2.txt do not contain the current year."
132            IGCM_debug_Verif_Exit
133        fi
134        value4=`grep Annee_${year} CO2.txt | awk -F= '{print $2 * 4}'`
135    else
136        value=DEFAULT
137        value4=DEFAULT
138    fi
139    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
140    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm_per $value4
141
142
143    # Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
144    if [ -f CH4.txt ] ; then
145        value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
146        if [ X"${value}" = X ] ; then
147            # The grep returned empty variable, stop execution
148            IGCM_debug_Exit "The file CH4.txt do not contain the current year."
149            IGCM_debug_Verif_Exit
150        fi
151    else
152        value=DEFAULT
153    fi
154    IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
155
156
157    # Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
158    if [ -f N2O.txt ] ; then
159        value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
160        if [ X"${value}" = X ] ; then
161            # The grep returned empty variable, stop execution
162            IGCM_debug_Exit "The file N2O.txt do not contain the current year."
163            IGCM_debug_Verif_Exit
164        fi
165    else
166        value=DEFAULT
167    fi
168    IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
169
170    # Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
171    if [ -f CFC11.txt ] ; then
172        value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
173        if [ X"${value}" = X ] ; then
174            # The grep returned empty variable, stop execution
175            IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
176            IGCM_debug_Verif_Exit
177        fi
178    else
179        value=DEFAULT
180    fi
181    IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
182
183
184    # Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
185    if [ -f CFC12.txt ] ; then
186        value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
187        if [ X"${value}" = X ] ; then
188            # The grep returned empty variable, stop execution
189            IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
190            IGCM_debug_Verif_Exit
191        fi
192    else
193        value=DEFAULT
194    fi
195    IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
196
197
198    ## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
199    LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
200    IGCM_debug_Print 3 "LMDZ_t_coupl "   ${LMDZ_t_coupl}
201    IGCM_comp_modifyDefFile nonblocker config.def t_coupl   ${LMDZ_t_coupl} 
202
203
204
205    ## Activate diagnostic output files and set output_level for each file
206
207    # histmth
208    if [ X${lmdz_UserChoices_output_level_histmth} = X ] || [ X${lmdz_UserChoices_output_level_histmth} = XNONE ] ; then
209        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled FALSE
210        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 0
211    else
212        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled TRUE
213        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level ${lmdz_UserChoices_output_level_histmth} 
214    fi
215
216    # histday
217    if [ X${lmdz_UserChoices_output_level_histday} = X ] || [ X${lmdz_UserChoices_output_level_histday} = XNONE ] ; then
218        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled FALSE
219        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 0
220    else
221        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled TRUE
222        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level ${lmdz_UserChoices_output_level_histday} 
223    fi
224
225    # histhf
226    if [ X${lmdz_UserChoices_output_level_histhf} = X ] || [ X${lmdz_UserChoices_output_level_histhf} = XNONE ] ; then
227        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled FALSE
228        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 0
229    else
230        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled TRUE
231        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level ${lmdz_UserChoices_output_level_histhf} 
232    fi
233
234    # histmthNMC
235    if [ X${lmdz_UserChoices_output_level_histmthNMC} = X ] || [ X${lmdz_UserChoices_output_level_histmthNMC} = XNONE ] ; then
236        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled FALSE
237        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC output_level 0
238    else
239        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled TRUE
240        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC output_level ${lmdz_UserChoices_output_level_histmthNMC} 
241    fi
242
243    # histdayNMC
244    if [ X${lmdz_UserChoices_output_level_histdayNMC} = X ] || [ X${lmdz_UserChoices_output_level_histdayNMC} = XNONE ] ; then
245        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled FALSE
246        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC output_level 0
247    else
248        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled TRUE
249        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC output_level ${lmdz_UserChoices_output_level_histdayNMC} 
250    fi
251
252    # histhfNMC
253    if [ X${lmdz_UserChoices_output_level_histhfNMC} = X ] || [ X${lmdz_UserChoices_output_level_histhfNMC} = XNONE ] ; then
254        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled FALSE
255        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC output_level 0
256    else
257        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled TRUE
258        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC output_level ${lmdz_UserChoices_output_level_histhfNMC} 
259    fi
260
261    # histstrataer
262    if [ X${lmdz_UserChoices_output_level_histstrataer} = X ] || [ X${lmdz_UserChoices_output_level_histstrataer} = XNONE ] ; then
263        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled FALSE
264        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer output_level 0
265    else
266        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled TRUE
267        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer output_level ${lmdz_UserChoices_output_level_histstrataer} 
268    fi
269
270    # histdaystrataer
271    if [ X${lmdz_UserChoices_output_level_histdaystrataer} = X ] || [ X${lmdz_UserChoices_output_level_histdaystrataer} = XNONE ] ; then
272        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled FALSE
273        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer output_level 0
274    else
275        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled TRUE
276        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer output_level ${lmdz_UserChoices_output_level_histstrataer}
277    fi
278
279    # histstn
280    if [ X${lmdz_UserChoices_output_level_histstn} = X ] || [ X${lmdz_UserChoices_output_level_histstn} = XNONE ] ; then
281        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled FALSE
282        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn output_level 0
283    else
284        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled TRUE
285        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn output_level ${lmdz_UserChoices_output_level_histstn} 
286    fi
287
288
289    # histmthCOSP
290    if [ X${lmdz_UserChoices_output_level_histmthCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histmthCOSP} = XNONE ] ; then
291        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled FALSE
292        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP output_level 0
293    else
294        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled TRUE
295        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP output_level ${lmdz_UserChoices_output_level_histmthCOSP} 
296    fi
297
298
299    # histdayCOSP
300    if [ X${lmdz_UserChoices_output_level_histdayCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histdayCOSP} = XNONE ] ; then
301        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled FALSE
302        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP output_level 0
303    else
304        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled TRUE
305        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP output_level ${lmdz_UserChoices_output_level_histdayCOSP} 
306    fi
307
308
309    # histhfCOSP
310    if [ X${lmdz_UserChoices_output_level_histhfCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histhfCOSP} = XNONE ] ; then
311        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled FALSE
312        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP output_level 0
313    else
314        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled TRUE
315        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP output_level ${lmdz_UserChoices_output_level_histhfCOSP} 
316    fi
317
318
319    ## run.def parameters
320
321
322    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
323    if [ ${CumulPeriod} -eq 1 ] ; then
324        IGCM_comp_modifyDefFile blocker run.def raz_date  1
325    else
326        IGCM_comp_modifyDefFile blocker run.def raz_date  0
327    fi
328
329    ##-- Calendar type for LMDZ and create_etat0_limit
330    #    calend is read from both LMDZ dynamics and physics parts of the model
331    case ${config_UserChoices_CalendarType} in
332        leap|gregorian)
333            IGCM_comp_modifyDefFile blocker run.def calend  gregorian ;;
334        noleap)
335            IGCM_comp_modifyDefFile blocker run.def calend  earth_365d ;;
336        360d)
337            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
338        *)
339            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
340    esac
341
342
343    ## -- Modify more calendar related variables.
344    IGCM_comp_modifyDefFile blocker run.def dayref    ${InitDay}
345    # Following variables are read by LMDZ dynamics
346    IGCM_comp_modifyDefFile blocker run.def nday      ${PeriodLengthInDays}
347
348    # Set anneeref different for gcm and create_etat0_limit mode
349    # Test if keyword create_etat0_limit=y is set in dynamico.card or in lmdz.card
350    if [ X${lmdz_UserChoices_create_etat0_limit} = Xy ] || [ X${dynamico_UserChoices_create_etat0_limit} = Xy ] ; then
351       # for case create_etat0_limit : always take current year
352       IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
353       
354       # Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
355       # In more recent versions of LMDZ, this will not be needed.
356           IGCM_comp_modifyDefFile force   run.def use_filtre_fft n
357    else
358        # for case gcm : take first year of simulation
359        IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
360    fi
361
362    ## Determine from the variable ListOfComponents in config.card coupling to external models
363    ## and set corresponding parameters in run.def
364    echo ListOfComponents now running : ${config_ListOfComponents[*]}
365
366    if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
367        echo "Activate ORCHIDEE, set VEGET=y in run.def"
368        IGCM_comp_modifyDefFile blocker run.def VEGET y
369    else
370        echo "No ORCHIDEE, set VEGET=n in run.def"
371        IGCM_comp_modifyDefFile blocker run.def VEGET n
372    fi
373
374    if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
375        echo "Activate coupling to ocean, set type_ocean=couple in run.def"
376        IGCM_comp_modifyDefFile blocker run.def type_ocean couple
377    else
378        echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
379        IGCM_comp_modifyDefFile nonblocker run.def type_ocean force
380    fi
381
382    if [ X${config_UserChoices_ConfigType} = XESMCO2AER ] ; then
383    echo "ESM config, with INCA and CO2i, set type_trac=inco in run.def"
384    IGCM_comp_modifyDefFile blocker run.def type_trac inco
385    IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
386    elif [ X${config_ListOfComponents_CHM} = Xinca ] ; then
387        echo "Activate coupling to INCA, set type_trac=inca in run.def"
388        IGCM_comp_modifyDefFile blocker run.def type_trac inca
389        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
390    elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
391        echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
392        IGCM_comp_modifyDefFile blocker run.def type_trac repr
393        IGCM_comp_modifyDefFile blocker run.def config_inca none
394        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
395    elif [ X${config_UserChoices_ConfigType} = XESMCO2 ] ; then
396        echo "ESM config, set type_trac=co2i in run.def"
397        IGCM_comp_modifyDefFile blocker run.def type_trac co2i
398        IGCM_comp_modifyDefFile blocker run.def config_inca none
399        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1 
400    elif [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
401        echo "No coupling to chemistry model but it is a LMDZ STRATAER configuration, set type_trac=coag in run.def"
402        IGCM_comp_modifyDefFile blocker run.def type_trac coag
403        IGCM_comp_modifyDefFile blocker run.def config_inca none
404        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1 
405    else
406        echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
407        IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
408        IGCM_comp_modifyDefFile blocker run.def config_inca none
409        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 0
410    fi
411
412    # run.def : Activate the new calving
413    if [ ! X${lmdz_UserChoices_cpl_old_calving} = X ]; then
414        IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving ${lmdz_UserChoices_cpl_old_calving}
415    else
416        IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving y
417    fi 
418
419    # physiq.def : Activate the call to phytrac
420    if [ ! X${lmdz_UserChoices_ok_bug_cv_trac} = X ]; then
421        IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac  ${lmdz_UserChoices_ok_bug_cv_trac}
422    else
423        IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac  n
424    fi 
425
426    # config.def : Activate aerosol strato
427    if [ ! X${lmdz_UserChoices_flag_aerosol_strat} = X ]; then
428        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat ${lmdz_UserChoices_flag_aerosol_strat}
429    else
430        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat DEFAULT
431    fi 
432
433    # config.def : Activate direct radiative effect if ok_ade=y
434    if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
435        IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
436    else
437        IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
438    fi 
439
440    # config.def : Activate indirect radiative effect if ok_aie=y
441    if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
442        IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
443    else
444        IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
445    fi 
446
447    # config.def : Activate online aerosol coupled model if aerosol_couple=y
448    if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
449        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
450    else
451        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
452    fi 
453
454    # config.def : Activate online Ozone chemistry coupled model if chemistry_couple=y
455    if [ ! X${lmdz_UserChoices_chemistry_couple} = X ]; then
456        IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple ${lmdz_UserChoices_chemistry_couple}
457    else
458        IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple n
459    fi 
460
461    # config.def : Activate reading of ozone in climatology if read_climoz=2
462    if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
463        IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
464    else
465        IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0     
466    fi 
467
468    # config.def : Choose aerosol use in radiative effect
469    #  type of coupled aerosol =1 (default) =2 => bc  only =3 => pom only =4 => seasalt only
470    # =5 => dust only =6 => all aerosol   
471    if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
472        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
473    else
474        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
475    fi 
476
477    # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
478    if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
479        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
480    else
481        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
482    fi 
483
484    # config.def : Activate COSP
485    if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then
486        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK}
487    else
488        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n
489    fi 
490
491    # config.def : Modify parameter pmagic if it is set in lmdz.card
492    if [ ! X${lmdz_UserChoices_pmagic} = X ]; then
493        IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic}
494    else
495        # Take default value set in config.def
496        IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT
497    fi
498
499    if ( [ X${config_UserChoices_ConfigType} = XESMCO2 ] || [ X${config_UserChoices_ConfigType} = XESMCO2AER ] ) ; then
500        # Set carbon cycle parameters according to parmeters in lmdz.card
501        IGCM_comp_modifyDefFile blocker config.def level_coupling_esm 2
502        IGCM_comp_modifyDefFile blocker config.def carbon_cycle_cpl ${lmdz_UserChoices_carbon_cycle_cpl} 
503        IGCM_comp_modifyDefFile blocker config.def carbon_cycle_tr ${lmdz_UserChoices_carbon_cycle_tr}
504        IGCM_comp_modifyDefFile blocker config.def carbon_cycle_rad ${lmdz_UserChoices_carbon_cycle_rad}
505        IGCM_comp_modifyDefFile nonblocker config.def co2_ppm0 ${lmdz_UserChoices_co2_ppm0} 
506    else
507        # Take default value set in config.def
508        IGCM_comp_modifyDefFile nonblocker config.def level_coupling_esm DEFAULT
509        IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_cpl DEFAULT
510        IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_tr DEFAULT
511        IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_rad DEFAULT
512        IGCM_comp_modifyDefFile nonblocker config.def co2_ppm0 DEFAULT
513    fi
514
515    if ( [ X${config_UserChoices_ConfigType} = XESMCO2 ] ) ; then
516        # Set carbon cycle parameters according to parmeters in lmdz.card
517        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_ocean_cor ${lmdz_UserChoices_read_fco2_ocean_cor}
518        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_ocean_cor ${lmdz_UserChoices_var_fco2_ocean_cor}
519        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_land_cor ${lmdz_UserChoices_read_fco2_land_cor}
520        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_land_cor ${lmdz_UserChoices_var_fco2_land_cor}
521    else
522        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_ocean_cor DEFAULT
523        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_ocean_cor DEFAULT
524        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_land_cor DEFAULT
525        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_land_cor DEFAULT
526    fi
527
528    # config.def : Modify parameter ok_volcan if ok_volcan=y or LMDZ_strataero=y in lmdz.card
529    # Note: ok_volcan is a flag allowing a double-call with/without natural forcing (instead of with/without anthro forcing).
530    if [ ! X${lmdz_UserChoices_ok_volcan} = X ] || [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
531        IGCM_comp_modifyDefFile nonblocker config.def ok_volcan ${lmdz_UserChoices_ok_volcan}
532    else
533        # Take default value set in config.def
534        IGCM_comp_modifyDefFile nonblocker config.def ok_volcan DEFAULT
535    fi
536
537    # physiq.def : Modify parameter tau_gl if it is set in lmdz.card
538    if [ ! X${lmdz_UserChoices_tau_gl} = X ]; then
539        IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl ${lmdz_UserChoices_tau_gl}
540    else
541        # Take default value set in physiq.def
542        IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl DEFAULT
543    fi
544   
545
546    # guide.def : Activate nudging if ok_guide=y set in lmdz.card
547    if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
548        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide  ${lmdz_UserChoices_ok_guide}
549    else
550        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
551    fi
552
553
554    # Specific ByPass option only used with LMDZ dynamcis (without DYNMAICO)
555    if [ X${config_ListOfComponents_ICO} = X ] ; then
556
557        ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
558        ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
559        if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
560            awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
561            IGCM_sys_Mv gcm.def.tmp gcm.def
562            echo
563            IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
564            echo
565            cat gcm.def
566            ByPass_hgardfou_teta=n
567        export lmdz_UserChoices_ByPass_hgardfou_teta=n
568            IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
569        fi
570       
571        ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
572        ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
573        if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
574            sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
575            IGCM_sys_Mv gcm.def.tmp gcm.def
576            echo
577            IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
578            echo
579            cat gcm.def
580            ByPass_hgardfou_mats=n
581            export lmdz_UserChoices_ByPass_hgardfou_mats=n
582            IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
583        fi
584    fi
585
586    # Add include of LMDZ context in iodef.xml
587    # In iodef.xml add on the next line after "COMPONENT CONTEXT"
588    echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
589    # Add inclusion of file context_input_lmdz.xml if this file exists
590    if [ -f context_input_lmdz.xml ] ; then
591        echo '<context id="LMDZ" src="./context_input_lmdz.xml"/>' >> add.tmp
592    fi
593    # Include xml files for output configuration if running with workflow CMIP6
594    if ( [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] || [ X${config_Post_dr2xmlIPSL} = XTRUE ] ) ; then
595        echo '<context id="LMDZ" src="./ping_lmdz.xml"/>' >> add.tmp
596        echo '<context id="LMDZ" src="./dr2xml_lmdz.xml"/>' >> add.tmp
597    fi
598    cp iodef.xml iodef.xml.tmp
599    sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
600    rm iodef.xml.tmp add.tmp
601
602    #Long Name as global attribute (if LongName is not empty)
603    if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
604        listfile=$(ls file_def*lmdz.xml)
605        echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp
606        for file in ${listfile}
607        do
608            cp ${file} ${file}.tmp
609            sed -e "/<file id/r add.tmp" \
610                ${file}.tmp > ${file}
611            rm ${file}.tmp
612        done
613        rm add.tmp
614    fi
615
616    # Compression level (if CompressionLevel is not empty)
617    if [ ! "X${config_UserChoices_CompressionLevel}" = "X" ] ; then
618        echo "NetCDF output files compression level is " ${config_UserChoices_CompressionLevel}
619        listfile=$(ls file_def*lmdz.xml)
620        for file in ${listfile} ; do
621            sed -i -e "s/\(compression_level=\"\)[^\"]*\(\"\)/\1${config_UserChoices_CompressionLevel}\2/" ${file}
622        done
623    fi
624
625
626    # Set interpolated output grid depending on resoultion, only if ICO component is set in config.card
627    if [ ! "X${config_ListOfComponents_ICO}" = "X" ] ; then   
628        if [ ${RESOL_NBP} == 40  ] ; then
629            valuei=144
630            valuej=143
631        elif [ ${RESOL_NBP} == 80  ] ; then
632            valuei=360
633            valuej=180
634        elif [ ${RESOL_NBP} == 160  ] ; then
635            valuei=720
636            valuej=360
637    elif [ ${RESOL_NBP} == 320  ] ; then
638        valuei=1440
639        valuej=720
640        else
641            IGCM_debug_Exit "RESOL_NBP=${RESOL_NBP} is not yet implemented in drivers"
642            IGCM_debug_Verif_Exit
643        fi
644
645        IGCM_debug_Print 1 "Modify output grid parameters for current resolution in context_lmdz.xml"
646        cp context_lmdz.xml context_lmdz.xml.init
647        sed -e "s/ni_glo.*=.*\"144\"/ni_glo=\"${valuei}\"/" \
648            -e "s/nj_glo.*=.*\"143\"/nj_glo=\"${valuej}\"/" \
649            context_lmdz.xml.init > context_lmdz.xml
650    fi
651
652
653    IGCM_debug_PopStack "ATM_Update"
654}
655
656#-----------------------------------
657function ATM_Finalize
658{
659    IGCM_debug_PushStack "ATM_Finalize"
660
661    IGCM_debug_Print 1 "FINALIZE ATM !"
662
663    IGCM_debug_PopStack "ATM_Finalize"
664}
665
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