1 | #!/bin/bash |
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2 | |
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3 | #on veut archiver les fichiers Debug. |
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4 | #Ils seront tous regroupes dans un repertoire DEBUG commun |
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5 | # on les renommes (repertoire DEBUG) de la meme maniere que les fichiers restart |
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6 | # puis on les archive via tar par periode |
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7 | #Creation des listes dans un repertoire debug_tar |
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8 | |
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9 | config_card=${1} |
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10 | LISTE_DMNFS=${2} |
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11 | |
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12 | |
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13 | export JOB_DIR=${JOB_DIR:-${TMP_MIGR_DATA}} |
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14 | export IGCM_DEM=${IGCM_DEM:-${SCRATCHDIR}/IGCM_DEM} |
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15 | export IGCM_TMP=${IGCM_TMP:-${IGCM_DEM}/tmp} |
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16 | mkdir -p ${IGCM_DEM} |
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17 | mkdir -p ${IGCM_TMP} |
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18 | clean_tmp=${clean_tmp:-yes} |
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19 | EXE_DIR=$(dirname ${0}) |
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20 | SCRIPT_NAME=$(basename ${0} ) |
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21 | |
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22 | source ${EXE_DIR}/DEM_utilities.sh |
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23 | |
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24 | # gpdebug : verif si le present script a ete execute jusqu'au bout ######### |
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25 | MonitoringInfo="${SCRIPT_NAME}-->OK" |
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26 | simuMonitoring_check "$MonitoringInfo" "$config_card" |
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27 | |
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28 | DEM_log -0 "Demarrage de ${SCRIPT_NAME}" |
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29 | |
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30 | #### 0- lecture de config.card |
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31 | #### on veut les renseignements suivants : |
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32 | #### JobName, PATH_SIMUL, DateBegin et DateEnd |
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33 | eval $(grep JobName ${config_card}) |
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34 | eval $(grep PATH_SIMUL_FULL ${config_card}) |
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35 | eval $(grep DateBegin ${config_card}) |
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36 | eval $(grep DateEnd ${config_card}) |
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37 | eval $(grep IGCM_DEM_SIMU ${config_card}) |
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38 | |
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39 | |
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40 | #### Preparation de l'environnement |
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41 | # repertoire dans lequel seront renommes les fichiers de debug |
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42 | STORE_DEBUG=$IGCM_DEM_SIMU/DEBUG |
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43 | mkdir -p ${STORE_DEBUG} |
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44 | |
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45 | # repertoire dans lequel nous stockerons les listes de debug a archiver |
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46 | DEBUG_TAR=$IGCM_DEM_SIMU/debug_tar |
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47 | mkdir -p ${DEBUG_TAR} |
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48 | STORE_CP=$IGCM_DEM_SIMU/store_cp |
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49 | mkdir -p ${STORE_CP} |
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50 | |
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51 | # lecture de periodpack dans ${IGCM_DEM_SIMU}/period_pack.txt |
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52 | period_pack=`awk '{print $0} ' ${IGCM_DEM_SIMU}/period_pack.txt` |
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53 | |
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54 | #### 1- renommer les fichiers ###### |
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55 | DEM_log -1 "Renommer les fichiers de Debug" |
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56 | |
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57 | cd ${STORE_DEBUG} |
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58 | if [ "x${STORE_DEBUG}" != "x" ] |
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59 | then |
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60 | rm -rf * |
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61 | fi |
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62 | # On copie les fichiers de Debug sur le scratchdir en changeant le nom et conservant la date |
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63 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Debug | grep "f "| awk '{print $3}' | sed '/^.*Debug$/d' | sort >> ${IGCM_TMP}/${$}.liste_debug_files.txt |
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64 | |
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65 | # Test si il y a un repertoire Debug |
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66 | listDebugNbLines=`cat ${IGCM_TMP}/${$}.liste_debug_files.txt | wc -l ` |
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67 | if [ "x${listDebugNbLines}" == "x0" ] |
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68 | then |
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69 | DEM_log -0 "Pas de repertoire Debug pour cette simulation" |
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70 | else |
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71 | # cas particulier : les fichiers Bands sont conserves sans etre archives |
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72 | grep ${JobName}_Bands ${IGCM_TMP}/${$}.liste_debug_files.txt >> ${STORE_CP}/cp_files.list |
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73 | sed "/${JobName}_Bands/d" ${IGCM_TMP}/${$}.liste_debug_files.txt > ${IGCM_TMP}/${$}.liste_debug_files.txt_tmp |
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74 | mv ${IGCM_TMP}/${$}.liste_debug_files.txt_tmp ${IGCM_TMP}/${$}.liste_debug_files.txt |
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75 | |
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76 | # on s assure que les fichiers restant sont bien des fichiers dans Debug et pas des fichiers dans des sous-repertoires" |
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77 | for file in `cat ${IGCM_TMP}/${$}.liste_debug_files.txt ` ; do |
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78 | dir=$( echo $file | sed -e "s%.*Debug/%%") |
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79 | testdir=$(dirname ${dir}) |
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80 | if [ $testdir != "." ]; then |
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81 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_debug_files.txt) >> ${IGCM_TMP}/${$}.liste_no_debug_files.txt |
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82 | fi |
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83 | done |
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84 | if [ -f ${IGCM_TMP}/${$}.liste_no_debug_files.txt ]; then |
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85 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_debug_files.txt ${IGCM_TMP}/${$}.liste_no_debug_files.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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86 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_debug_files.txt |
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87 | rm -f ${IGCM_TMP}/${$}.liste_no_debug_files.txt |
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88 | fi |
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89 | gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${IGCM_TMP}/${$}.liste_debug_files.txt |
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90 | #on fait de meme avec les fichiers out_gcm.e stockes dans le repertoire Out/ qui seront prefixes par Out_ |
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91 | rm -f ${IGCM_TMP}/${$}.liste_debug_files.txt |
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92 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep -w Out | awk '{print $3}' | sed '/^.*Out$/d' > ${IGCM_TMP}/${$}.liste_debug_files.txt |
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93 | gawk -F/ '{dest_name=$(NF-1)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${IGCM_TMP}/${$}.liste_debug_files.txt |
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94 | |
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95 | |
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96 | ls -l ${STORE_DEBUG} > ${IGCM_TMP}/${$}.new_liste_debug_files.txt |
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97 | |
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98 | |
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99 | #creation des listes en fonction des suffixes |
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100 | if [ "x${ON_IDRIS}" == "xno" ] |
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101 | then |
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102 | awk '{if (NR >1) print $9}' ${IGCM_TMP}/${$}.new_liste_debug_files.txt > ${IGCM_TMP}/${$}.new_liste_debug_files.txt_tmp |
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103 | else |
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104 | awk '{if (NR >1) print $8}' ${IGCM_TMP}/${$}.new_liste_debug_files.txt > ${IGCM_TMP}/${$}.new_liste_debug_files.txt_tmp |
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105 | fi |
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106 | sort ${IGCM_TMP}/${$}.new_liste_debug_files.txt_tmp > ${IGCM_TMP}/${$}.order_new_liste_debug_files.txt |
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107 | ref=`awk -F_ '{if (NR==1) print $1}' ${IGCM_TMP}/${$}.order_new_liste_debug_files.txt` |
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108 | |
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109 | |
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110 | |
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111 | i=1 |
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112 | for new_file in `awk '{print $0}' ${IGCM_TMP}/${$}.order_new_liste_debug_files.txt`; do |
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113 | new_ref=$( echo ${new_file} | sed -e "s/_.*//") |
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114 | |
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115 | if [ ${new_ref} == ${ref} ]; then |
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116 | echo ${new_file} >> ${IGCM_TMP}/${$}.debug_list_${i}.txt |
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117 | else |
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118 | ref=${new_ref} |
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119 | (( i = $i + 1 )) |
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120 | echo ${new_file} >> ${IGCM_TMP}/${$}.debug_list_${i}.txt |
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121 | fi |
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122 | done |
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123 | |
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124 | j=1 |
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125 | while [[ $j -le $i ]]; do |
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126 | |
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127 | |
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128 | ### 2- creer les listes de fichiers par periode #### |
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129 | DEM_log -1 "Creation des listes de fichiers par periode" |
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130 | ### 2.1- extraire l'annee et le mois de DateBegin ### |
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131 | date_begin=${DateBegin} |
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132 | date_end=${DateEnd} |
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133 | |
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134 | year_begin=$(echo ${date_begin} | cut -c 1-4 ) |
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135 | month_begin=$(echo ${date_begin} | cut -c 5-6 ) |
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136 | year_end=$(echo ${date_end} | cut -c 1-4 ) |
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137 | month_end=$(echo ${date_end} | cut -c 5-6 ) |
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138 | |
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139 | |
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140 | ### 2.2- creation des listes ### |
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141 | date_begin_pack=${date_begin} |
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142 | date_end_simulation=${date_end} |
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143 | |
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144 | month_begin_pack=${month_begin} |
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145 | year_begin_pack=${year_begin} |
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146 | |
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147 | number_pack=1 |
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148 | |
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149 | while [ ${date_begin_pack} -le ${date_end_simulation} ] |
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150 | do |
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151 | |
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152 | DEM_log -1 "On calcule la date de fin du pack " |
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153 | month_end_pack=${month_begin_pack} |
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154 | year_end_pack=`expr ${year_begin_pack} + ${period_pack}` |
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155 | |
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156 | date_end_pack=${year_end_pack}${month_end_pack}01 |
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157 | for file in `awk '{print $1}' ${IGCM_TMP}/${$}.debug_list_${j}.txt`; do |
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158 | extract_date_file=`echo ${file} | sed -e "s/.*\${JobName}_//"` |
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159 | date_file=`echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g'` |
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160 | if [[ "x${date_file}" != "x" && ! -n ${date_file//[0-9]/} ]]; then |
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161 | if [ ${date_file} -lt ${date_end_pack} ] |
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162 | then |
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163 | if [ ${date_file} -ge ${date_begin_pack} ] |
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164 | then |
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165 | echo ${file} >> ${IGCM_TMP}/${$}.liste_pack_debug_${number_pack}.txt |
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166 | grep -v ${file} ${IGCM_TMP}/${$}.debug_list_${j}.txt > ${IGCM_TMP}/${$}.debug_list_${j}.txt.tmp |
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167 | mv ${IGCM_TMP}/${$}.debug_list_${j}.txt.tmp ${IGCM_TMP}/${$}.debug_list_${j}.txt |
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168 | |
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169 | fi |
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170 | fi |
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171 | fi |
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172 | if [ ${date_file} -gt ${date_end_pack} ] |
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173 | then |
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174 | break |
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175 | fi |
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176 | |
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177 | done |
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178 | month_begin_pack=${month_end_pack} |
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179 | year_begin_pack=${year_end_pack} |
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180 | |
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181 | date_begin_pack=${year_begin_pack}${month_begin_pack}01 |
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182 | |
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183 | number_pack=`expr ${number_pack} + 1` |
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184 | done |
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185 | |
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186 | ((j = $j + 1 )) |
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187 | done |
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188 | |
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189 | compt_pack=1 |
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190 | while [[ $compt_pack -le $number_pack ]]; do |
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191 | |
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192 | #on archive les debug - le nom de l'archive contiendra ${yearbegin}${monthbegin}_${yearend}${monthend} |
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193 | # end etant la date du dernier fichier contenu et non pas la premiere date suivant |
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194 | DEM_log -1 "Recherche de la date de fin reel pour nommer l'archive " |
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195 | #On classe par ordre alphabetique les fichiers contenus dans liste_pack_debug |
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196 | #la date du dernier fichier donnera la date de fin du pack |
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197 | if [[ -f ${IGCM_TMP}/${$}.liste_pack_debug_${compt_pack}.txt ]] ; then |
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198 | sort ${IGCM_TMP}/${$}.liste_pack_debug_${compt_pack}.txt > ${IGCM_TMP}/${$}.liste_pack_debug_${compt_pack}.txt.tmp |
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199 | |
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200 | first_file=$(head -n 1 ${IGCM_TMP}/${$}.liste_pack_debug_${compt_pack}.txt.tmp ) |
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201 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
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202 | DateBegin_Debug=$(echo ${extract_date_file}| sed 's%\([0-9]\{8\}\)_.*$%\1%g' ) |
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203 | |
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204 | last_file=$(tail -n 1 ${IGCM_TMP}/${$}.liste_pack_debug_${compt_pack}.txt.tmp ) |
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205 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
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206 | DateEnd_Debug=$( echo ${extract_date_file}| sed 's%.*\([0-9]\{8\}\)_.*$%\1%g' ) |
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207 | mv ${IGCM_TMP}/${$}.liste_pack_debug_${compt_pack}.txt.tmp ${DEBUG_TAR}/${JobName}_debug_${DateBegin_Debug}_${DateEnd_Debug}.list |
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208 | fi |
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209 | |
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210 | |
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211 | |
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212 | DEM_log -1 "On definit le datebegin de la prochaine periode pack" |
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213 | #on definit la periode pack suivante |
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214 | |
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215 | compt_pack=`expr ${compt_pack} + 1` |
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216 | done |
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217 | |
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218 | fi |
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219 | |
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220 | cd ${EXE_DIR} |
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221 | |
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222 | # gpdebug : le script n a pas rencontre d'erreur. On l'inscrit dans le fichier de suivi |
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223 | simuMonitoring_OK "$MonitoringInfo" "$config_card" |
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