| 1 | #!/bin/ksh |
|---|
| 2 | # $Id$ |
|---|
| 3 | #--------------------------------------------------------------------- |
|---|
| 4 | #- Installation of jobs according to an environment |
|---|
| 5 | #--------------------------------------------------------------------- |
|---|
| 6 | function ins_job_Usage |
|---|
| 7 | { |
|---|
| 8 | print - " |
|---|
| 9 | ins_job installs the jobs in the directories |
|---|
| 10 | which contain a file config.card |
|---|
| 11 | |
|---|
| 12 | ins_job must be launched on the host |
|---|
| 13 | on which the job will be submitted |
|---|
| 14 | |
|---|
| 15 | Usage : |
|---|
| 16 | ${b_n} [-h] [-v] [-e] [-p project] |
|---|
| 17 | |
|---|
| 18 | Options : |
|---|
| 19 | -h : help |
|---|
| 20 | -v : verbose mode |
|---|
| 21 | -e : turn on ensemble mode (hindcast/forecast or date restart) |
|---|
| 22 | -p project : add default project on curie |
|---|
| 23 | " |
|---|
| 24 | } |
|---|
| 25 | function ins_job_Warning |
|---|
| 26 | { |
|---|
| 27 | [[ ${x_v} = 'verbose' ]] && print - "\n############### WARNING ###############"; |
|---|
| 28 | [[ ${x_v} = 'verbose' ]] && print - "File ${n_f} already exists\nin directory ${j}"; |
|---|
| 29 | [[ ${x_v} = 'verbose' ]] && print - "You must delete this file to update !"; |
|---|
| 30 | } |
|---|
| 31 | |
|---|
| 32 | function ins_job_Check_JobName |
|---|
| 33 | { |
|---|
| 34 | verif=${JobName##[a-zA-Z]*(?([.\-])[a-zA-Z0-9])} |
|---|
| 35 | |
|---|
| 36 | if [ ${#verif} -ne 0 ] ; then |
|---|
| 37 | echo "################ ERROR ################" |
|---|
| 38 | echo "${JobName} is invalid." |
|---|
| 39 | echo "- JobName can only contain alphanumeric characters, \".\" and \"-\"" |
|---|
| 40 | echo "- JobName must start with a letter" |
|---|
| 41 | |
|---|
| 42 | ((NbErr=NbErr+1)) |
|---|
| 43 | |
|---|
| 44 | Status=1 |
|---|
| 45 | else |
|---|
| 46 | Status=0 |
|---|
| 47 | fi |
|---|
| 48 | |
|---|
| 49 | return ${Status} |
|---|
| 50 | } |
|---|
| 51 | |
|---|
| 52 | #- |
|---|
| 53 | # dirname and basename |
|---|
| 54 | #- |
|---|
| 55 | d_n=$(dirname ${0}); b_n=$(basename ${0}); |
|---|
| 56 | #- |
|---|
| 57 | # Retrieving and validation of the options |
|---|
| 58 | #- |
|---|
| 59 | x_v='silencious'; |
|---|
| 60 | x_e=false; |
|---|
| 61 | x_p=false; |
|---|
| 62 | while getopts :hvep: V ; do |
|---|
| 63 | case $V in |
|---|
| 64 | (h) ins_job_Usage; exit 0;; |
|---|
| 65 | (v) x_v='verbose';; |
|---|
| 66 | (e) x_e=true;; |
|---|
| 67 | (p) x_p=true |
|---|
| 68 | ProjectID=${OPTARG} ;; |
|---|
| 69 | (:) echo ${b_n}" : -"${OPTARG}" option : missing value" 1>&2; |
|---|
| 70 | exit 2;; |
|---|
| 71 | (\?) echo ${b_n}" : -"${OPTARG}" option : not supported" 1>&2; |
|---|
| 72 | exit 2;; |
|---|
| 73 | esac |
|---|
| 74 | done |
|---|
| 75 | [ ${x_v} = 'silencious' ] && export DEBUG_sys=false |
|---|
| 76 | shift $(($OPTIND-1)); |
|---|
| 77 | #- |
|---|
| 78 | # Define working files |
|---|
| 79 | #- |
|---|
| 80 | F_MOD=$(cd ${d_n}'/..';/bin/pwd;) |
|---|
| 81 | # [[ ${F_MOD##*/} != 'modipsl' ]] && \ |
|---|
| 82 | # { print - "directory 'modipsl' unreachable"; exit 3; } |
|---|
| 83 | W_W=${d_n}'/../libIGCM' |
|---|
| 84 | [[ ! -d ${W_W} ]] && { print - "${W_W} unreachable"; exit 3; } |
|---|
| 85 | libIGCM=$(cd ${W_W};/bin/pwd;) |
|---|
| 86 | F_JOB=${libIGCM}'/AA_job'; |
|---|
| 87 | [[ ! -f ${F_JOB} ]] && { print - "${F_JOB} unreachable"; exit 3; } |
|---|
| 88 | F_RCI=${libIGCM}'/run.card.init'; |
|---|
| 89 | [[ ! -f ${F_RCI} ]] && { print - "${F_RCI} unreachable"; exit 3; } |
|---|
| 90 | #- |
|---|
| 91 | # Host Name |
|---|
| 92 | #- |
|---|
| 93 | x_t=$(${d_n}/w_i_h) 2>/dev/null; |
|---|
| 94 | { [[ ${?} != 0 ]] && \ |
|---|
| 95 | { print - "\nw_i_h or uname unreachable\n" 1>&2; exit 1; }; } || \ |
|---|
| 96 | [[ ${x_t} = "Unknown" ]] && \ |
|---|
| 97 | { print - "\nLocal_Host not supported\n" 1>&2; exit 1; }; |
|---|
| 98 | #- |
|---|
| 99 | W_W=$(sed -n -e "s/^#-Q- *\([^ ]*\).*$/\1/p" ${F_JOB} | \ |
|---|
| 100 | sort -u | sed -e "/${x_t}/!d"); |
|---|
| 101 | [[ '\?'"${W_W}" != '\?'${x_t} ]] && \ |
|---|
| 102 | { |
|---|
| 103 | print - "\nHost "${x_t}" not supported" 1>&2; |
|---|
| 104 | print - "'default' will be used" 1>&2; |
|---|
| 105 | x_t='default' |
|---|
| 106 | } |
|---|
| 107 | #- |
|---|
| 108 | [[ ${x_v} = 'verbose' ]] && \ |
|---|
| 109 | { |
|---|
| 110 | print - ""; |
|---|
| 111 | print - '--- Host : '${x_t}; |
|---|
| 112 | print - '--- modipsl : '${F_MOD}; |
|---|
| 113 | print - '--- libIGCM : '${libIGCM}; |
|---|
| 114 | print - '--- basic job : '${F_JOB}; |
|---|
| 115 | print - '--- basic card : '${F_RCI}; |
|---|
| 116 | } |
|---|
| 117 | #- |
|---|
| 118 | [[ ${x_v} = 'verbose' ]] && print - "\nInstallation of jobs for '${x_t}'"; |
|---|
| 119 | #- |
|---|
| 120 | # Accessing to functions (without stack) |
|---|
| 121 | #- |
|---|
| 122 | DEBUG_debug=false |
|---|
| 123 | MirrorlibIGCM=false |
|---|
| 124 | TaskType=computing |
|---|
| 125 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
|---|
| 126 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
|---|
| 127 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
|---|
| 128 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
|---|
| 129 | if [ $x_e = 'true' ] ; then |
|---|
| 130 | . ${libIGCM}/libIGCM_ensemble/libIGCM_ensemble.ksh |
|---|
| 131 | fi |
|---|
| 132 | |
|---|
| 133 | NbErr=0 |
|---|
| 134 | |
|---|
| 135 | #- |
|---|
| 136 | # Define Project ID to set up jobs header for Curie (TGCC) |
|---|
| 137 | #- |
|---|
| 138 | if ( ! ${x_p} ) ; then |
|---|
| 139 | if [ X"${x_t}" == "Xcurie" ] ; then |
|---|
| 140 | ProjectID=$( ccc_myproject | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | head -n 1 ) |
|---|
| 141 | ProjectID=${ProjectID:="gen2211"} |
|---|
| 142 | answer="" |
|---|
| 143 | print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u ) ) :" |
|---|
| 144 | read answer |
|---|
| 145 | |
|---|
| 146 | if [ "X${answer}" != "X" ] ; then |
|---|
| 147 | ProjectID=${answer} |
|---|
| 148 | fi |
|---|
| 149 | fi |
|---|
| 150 | else |
|---|
| 151 | if [ X"${x_t}" != "Xcurie" ] ; then |
|---|
| 152 | print - "\nOption -p invalid with this host (${x_t}): it will be ignored" 1>&2; |
|---|
| 153 | fi |
|---|
| 154 | fi |
|---|
| 155 | |
|---|
| 156 | #- |
|---|
| 157 | # Define the pattern string to substitute |
|---|
| 158 | #- |
|---|
| 159 | W_P='#-Q- '; W_W=${W_P}${x_t}; |
|---|
| 160 | #- |
|---|
| 161 | # Extract list of 'config.card' files |
|---|
| 162 | # and create jobs with AA_job |
|---|
| 163 | #- |
|---|
| 164 | F_CFG='config.card'; |
|---|
| 165 | F_CFG_ENS='ensemble.card'; |
|---|
| 166 | SUBMIT_DIR_ENS=$( pwd ) |
|---|
| 167 | for i in $(find ${d_n}/.. -name ${F_CFG} -print) |
|---|
| 168 | do |
|---|
| 169 | j=$(cd ${i%/*};/bin/pwd;) |
|---|
| 170 | n_f=${F_RCI##*/}; |
|---|
| 171 | |
|---|
| 172 | if [ ! X$( echo ${j} | grep EXPERIMENTS ) = X ] ; then |
|---|
| 173 | # Do not treat config.card if it is in sub-directory of EXPERIMENTS |
|---|
| 174 | # Continue to next config.card |
|---|
| 175 | continue |
|---|
| 176 | else |
|---|
| 177 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
|---|
| 178 | fi |
|---|
| 179 | |
|---|
| 180 | # Find out if new structure and set .resol filename |
|---|
| 181 | if [ -d ${j}/EXPERIMENTS ] && [ -d ${j}/GENERAL ] ; then |
|---|
| 182 | # New Structure |
|---|
| 183 | [[ ${x_v} = 'verbose' ]] && echo "This is new configuration structure" |
|---|
| 184 | new_struct=yes |
|---|
| 185 | resolfile=$j/.resol |
|---|
| 186 | else |
|---|
| 187 | # Old Structure |
|---|
| 188 | new_struct=no |
|---|
| 189 | resolfile=$j/../.resol |
|---|
| 190 | fi |
|---|
| 191 | |
|---|
| 192 | # Get all variables declared in section UserChoices in config.card |
|---|
| 193 | IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} UserChoices |
|---|
| 194 | # Set default values |
|---|
| 195 | config_UserChoices_JobClass=mono |
|---|
| 196 | config_UserChoices_JobNumProcTot=1 |
|---|
| 197 | config_UserChoices_ExpType="" |
|---|
| 198 | RESOL_ATM_3D=this_is_a_test_string |
|---|
| 199 | RESOL=this_is_another_test_string |
|---|
| 200 | typeset option |
|---|
| 201 | for option in ${config_UserChoices[*]} ; do |
|---|
| 202 | IGCM_card_DefineVariableFromOption ${j}'/'${F_CFG} UserChoices ${option} |
|---|
| 203 | done |
|---|
| 204 | |
|---|
| 205 | # Find the JobName : JobName might contain the variable RESOL_ATM_3D that will be replaced by what is in .resol file |
|---|
| 206 | if [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL_ATM_3D} ) = X ] ; then |
|---|
| 207 | TRUERESOL=$( tail -1 $resolfile | awk "-F=" '{print $2}' ) |
|---|
| 208 | echo TRUERESOL = $TRUERESOL |
|---|
| 209 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL_ATM_3D}/${TRUERESOL}/" ) |
|---|
| 210 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
|---|
| 211 | elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL} ) = X ] ; then |
|---|
| 212 | TRUERESOL=$( head -1 $resolfile ) |
|---|
| 213 | JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL}/${TRUERESOL}/" ) |
|---|
| 214 | IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName} |
|---|
| 215 | else |
|---|
| 216 | JobName=${config_UserChoices_JobName} |
|---|
| 217 | fi |
|---|
| 218 | |
|---|
| 219 | # Check JobName validity : only alphanumerical characters, "-" and "." are authorized |
|---|
| 220 | ins_job_Check_JobName |
|---|
| 221 | RetCode=$? |
|---|
| 222 | [[ $RetCode -gt 0 ]] && continue |
|---|
| 223 | |
|---|
| 224 | [[ ${x_v} = 'verbose' ]] && echo "JobName=${JobName}" |
|---|
| 225 | |
|---|
| 226 | # Add specific treatment for new type of directory structure |
|---|
| 227 | if [ ${new_struct} == yes ] ; then |
|---|
| 228 | |
|---|
| 229 | if [ "X${config_UserChoices_ExpType}" = X ] ; then |
|---|
| 230 | echo "\nERROR in ${j}/config.card" |
|---|
| 231 | echo "ins_job stops here" |
|---|
| 232 | echo "=> The variable ExpType must be added in config.card in section UserChoices" |
|---|
| 233 | echo "=> ExpType gives the directory for the .card configurtaion files for the wanted experiement. For exemple ExpType=IPSLCM5/historical" |
|---|
| 234 | exit 4 |
|---|
| 235 | else |
|---|
| 236 | [[ ${x_v} = 'verbose' ]] && echo "ExpType= ${config_UserChoices_ExpType}" |
|---|
| 237 | fi |
|---|
| 238 | |
|---|
| 239 | if [ -d ${j}/${JobName} ] ; then |
|---|
| 240 | echo "Directory ${j}/${JobName} exist already, continue next config.card" |
|---|
| 241 | continue |
|---|
| 242 | fi |
|---|
| 243 | echo "=> Submit directory ${JobName} will be created with cards from EXPERIMENTS/${config_UserChoices_ExpType}" |
|---|
| 244 | cp -r ${j}/EXPERIMENTS/${config_UserChoices_ExpType} ${j}/${JobName} |
|---|
| 245 | cp -r ${j}/GENERAL/* ${j}/${JobName}/. |
|---|
| 246 | cp -f ${j}/${F_CFG} ${j}/${JobName}/. |
|---|
| 247 | if [ -f ${F_CFG_ENS} ] ; then |
|---|
| 248 | cp -f ${j}/${F_CFG_ENS} ${j}/${JobName}/. |
|---|
| 249 | SUBMIT_DIR_ENS=${j}/${JobName} |
|---|
| 250 | fi |
|---|
| 251 | rm -f ${j}/${F_CFG} |
|---|
| 252 | rm -f ${j}/${F_CFG_ENS} |
|---|
| 253 | rm -f ${j}/${F_CFG}.bak |
|---|
| 254 | j=${j}/${JobName} |
|---|
| 255 | [[ ${x_v} = 'verbose' ]] && echo new j=$j |
|---|
| 256 | fi |
|---|
| 257 | # end specific treatment for new type directory structure |
|---|
| 258 | |
|---|
| 259 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; } || \ |
|---|
| 260 | { |
|---|
| 261 | [[ ${x_v} = 'verbose' ]] && print - "\nCopying file ${F_RCI}\nin directory ${j}"; |
|---|
| 262 | \cp ${F_RCI} ${j}; |
|---|
| 263 | } |
|---|
| 264 | |
|---|
| 265 | # File name for Job |
|---|
| 266 | n_f='Job_'${JobName}; |
|---|
| 267 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
|---|
| 268 | [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}"; |
|---|
| 269 | sed -e "/^${W_W} */ s///" \ |
|---|
| 270 | -e "/^${W_P}/d" \ |
|---|
| 271 | -e "s%::modipsl::%${F_MOD}%" \ |
|---|
| 272 | -e "s/::Jobname::/${JobName}/" \ |
|---|
| 273 | -e "s/::JobClass::/${config_UserChoices_JobClass}/" \ |
|---|
| 274 | -e "s/::JobNumProcTot::/${config_UserChoices_JobNumProcTot}/" \ |
|---|
| 275 | -e "s/::default_project::/${ProjectID}/" \ |
|---|
| 276 | ${F_JOB} > ${j}'/'${n_f} |
|---|
| 277 | chmod u+x ${j}'/'${n_f} |
|---|
| 278 | done |
|---|
| 279 | #- |
|---|
| 280 | # Extract list of AA_* files in libIGCM |
|---|
| 281 | # and create jobs (for all except AA_job) |
|---|
| 282 | #- |
|---|
| 283 | for i in $(find ${libIGCM} -maxdepth 1 -name "AA_*" -print) |
|---|
| 284 | do |
|---|
| 285 | i_f=${i##*/}; |
|---|
| 286 | [[ ${i_f} = 'AA_job' ]] && { continue; } |
|---|
| 287 | j=${i%/*}; n_f=${i_f#AA_}'.job'; |
|---|
| 288 | [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; } |
|---|
| 289 | [[ ${x_v} = 'verbose' ]] && print - "\nIn directory ${j}\n${i_f} -> ${n_f}" |
|---|
| 290 | sed -e "/^${W_W} */ s///" \ |
|---|
| 291 | -e "s%::modipsl::%${F_MOD}%" \ |
|---|
| 292 | -e "/^${W_P}/d" \ |
|---|
| 293 | -e "s/::default_project::/${ProjectID}/" \ |
|---|
| 294 | ${i} > ${j}'/'${n_f} |
|---|
| 295 | chmod u+x ${j}'/'${n_f} |
|---|
| 296 | done |
|---|
| 297 | #- |
|---|
| 298 | # set default_project in libIGCM_sys_curie.ksh too. |
|---|
| 299 | #- |
|---|
| 300 | if [ X"${x_t}" == "Xcurie" ] ; then |
|---|
| 301 | i=${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh |
|---|
| 302 | sed -i -e "s/::default_project::/${ProjectID}/" ${i} |
|---|
| 303 | fi |
|---|
| 304 | #- |
|---|
| 305 | # Limited to hindcast/forecast and date restart Ensemble for the time being |
|---|
| 306 | if [ ${x_e} = 'true' ] ; then |
|---|
| 307 | #.. Read input data from ensemble.card .. |
|---|
| 308 | SUBMIT_DIR=${SUBMIT_DIR_ENS} |
|---|
| 309 | RUN_DIR="${WORKDIR}/ENSEMBLE" |
|---|
| 310 | # |
|---|
| 311 | # Copy initial things around and define variables (hindcast/forecast case) |
|---|
| 312 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 313 | IGCM_ensemble_Init |
|---|
| 314 | |
|---|
| 315 | if [[ ${ensemble_Ens_PARAMETRIC_active} = 'y' ]] ; then |
|---|
| 316 | echo "WARNING: Parametric Ensemble is not implemented yet..." |
|---|
| 317 | fi |
|---|
| 318 | |
|---|
| 319 | if [[ ${ensemble_Ens_DATE_active} = 'y' ]] ; then |
|---|
| 320 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 321 | IGCM_ensemble_DateInit |
|---|
| 322 | # As it says |
|---|
| 323 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 324 | IGCM_ensemble_DatePeriodicStarts |
|---|
| 325 | # As it says |
|---|
| 326 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 327 | IGCM_ensemble_DateNonPeriodicStarts |
|---|
| 328 | # Clean |
|---|
| 329 | IGCM_sys_Rm -rf ${RUN_DIR} |
|---|
| 330 | fi |
|---|
| 331 | |
|---|
| 332 | if [[ ${ensemble_Ens_PERTURB_active} = 'y' ]] ; then |
|---|
| 333 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 334 | IGCM_ensemble_CastInit |
|---|
| 335 | # As it says |
|---|
| 336 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 337 | IGCM_ensemble_CastPeriodicStarts |
|---|
| 338 | # As it says |
|---|
| 339 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 340 | IGCM_ensemble_CastNonPeriodicStarts |
|---|
| 341 | # Done |
|---|
| 342 | IGCM_sys_Cp ${RUN_DIR}/CreatedDir.txt ${SUBMIT_DIR} |
|---|
| 343 | IGCM_sys_Cd ${SUBMIT_DIR} |
|---|
| 344 | # Clean |
|---|
| 345 | IGCM_sys_Rm -rf ${RUN_DIR} |
|---|
| 346 | fi |
|---|
| 347 | fi |
|---|
| 348 | #- |
|---|
| 349 | [[ ${x_v} = 'verbose' ]] && print - ""; |
|---|
| 350 | #- |
|---|
| 351 | # That's all folks |
|---|
| 352 | #- |
|---|
| 353 | |
|---|
| 354 | if [ ${NbErr} -ne 0 ] ; then |
|---|
| 355 | echo "################ ERROR ################" |
|---|
| 356 | echo "${NbErr} invalid JobName(s) found, check the log" |
|---|
| 357 | fi |
|---|
| 358 | |
|---|
| 359 | |
|---|
| 360 | exit 0; |
|---|
