Ignore:
Timestamp:
03/08/16 13:04:48 (6 years ago)
Author:
jgipsl
Message:

Update to be coherent with LMDZOR_v6 :

  • added vert.def and removed vertical dependencies from gcm.def and physiq.def
  • added new physiq.def_NPv5.4. Note this is still under develeoppement.
  • clean old parameters in orchidee not longer used/existing
  • use file_def_orchidee.xml from ORCHIDEE source model directory
Location:
CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS
Files:
21 edited

Legend:

Unmodified
Added
Removed
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card

    r2694 r2770  
    3333        (${R_IN}/ATM/Rugos.nc, .), \ 
    3434        (${R_IN}/ATM/landiceref.nc, .) 
    35 ### Please, add the o2a.nc file to fit with the coupled configuration associated 
    36 ### Note that this file is different for different versions of the coupled model 
     35 
     36### Optional: Add the o2a.nc file to fit with the coupled configuration for the  
     37### land-sea mask. This file is different for different versions of the coupled model and 
     38### the different resolutions. Choose between following to fit with IPSLCM6 coupled model: 
     39#       (${R_IN}/ATM/IPSLCM6/eORCA1.1xLMD144142/o2a.nc, o2a.nc) 
    3740#       (${R_IN}/ATM/IPSLCM6/ORCA2.3x9695_v1/o2a.nc, o2a.nc) 
    3841 
     42 
    3943[ParametersFiles] 
    40 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    41         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \ 
     44List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def), \ 
     45        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),    \ 
     46        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),   \ 
    4247        (${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \ 
    4348        (${SUBMIT_DIR}/PARAM/run.def, .), \ 
     
    4954 
    5055[OutputText] 
    51 List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, guide.def) 
     56List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def) 
    5257 
    5358[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_clim/COMP/lmdz.card

    r2694 r2770  
    3434        (${R_IN}/ATM/AMIP_2014/sst_bc_clim.nc, amipbc_sst_1x1.nc), \ 
    3535        (${R_IN}/ATM/AMIP_2014/sic_bc_clim.nc, amipbc_sic_1x1.nc) 
    36 ### Please, add the o2a.nc file to fit with the coupled configuration associated 
    37 ### Note that this file is different for different versions of the coupled model 
     36 
     37### Optional: Add the o2a.nc file to fit with the coupled configuration for the  
     38### land-sea mask. This file is different for different versions of the coupled model and 
     39### the different resolutions. Choose between following to fit with IPSLCM6 coupled model: 
     40#       (${R_IN}/ATM/IPSLCM6/eORCA1.1xLMD144142/o2a.nc, o2a.nc) 
    3841#       (${R_IN}/ATM/IPSLCM6/ORCA2.3x9695_v1/o2a.nc, o2a.nc) 
    3942 
     43 
    4044[ParametersFiles] 
    41 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    42         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \ 
     45List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def), \ 
     46        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),    \ 
     47        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),   \ 
    4348        (${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \ 
    4449        (${SUBMIT_DIR}/PARAM/run.def, .), \ 
     
    5055 
    5156[OutputText] 
    52 List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, guide.def) 
     57List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def) 
    5358 
    5459[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card

    r2694 r2770  
    1 # $Id$ 
    2  
    31[Compatibility] 
    42libIGCM=1.0 
     
    75# Physics package to use : 
    86# LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
    9 # LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later 
     7# LMDZ_Physics=NPv3.2 for an early version of the new physics, to be used with LMDZ5/trunk revision 1554 or later 
     8# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later 
    109LMDZ_Physics=AP 
    1110 
     
    8281 
    8382[ParametersFiles] 
    84 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    85         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \ 
     83List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \ 
     84        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
     85        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    8686        (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    8787        (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     
    111111 
    112112[OutputText] 
    113 List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
     113List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, vert.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
    114114 
    115115[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card

    r2694 r2770  
    1010 
    1111VEGET_UPDATE=1Y 
    12 LAND_COVER_CHANGE=y 
    1312 
    1413[InitialStateFiles] 
    1514List=   (${R_IN}/SRF/soils_param.nc,        . ), \ 
    1615        (${R_IN}/SRF/routing.nc,            . ), \ 
     16        (${R_IN}/SRF/albedo/alb_bg_jrctip.nc, . ), \ 
    1717        (${R_IN}/SRF/cartepente2d_15min.nc, .) 
    1818 
     
    2626[ParametersFiles] 
    2727List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\ 
    28         (${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\ 
     28        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\ 
    2929        (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\ 
    3030        (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .) 
     
    3838[OutputFiles] 
    3939List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    40         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \ 
    41         (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE) 
     40        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE) 
    4241 
    4342[Post_1M_sechiba_history] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card

    r2694 r2770  
    2929[Post_1M_stomate_history] 
    3030Patches= () 
    31 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas) 
     31GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas) 
    3232TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
    3333ChunckJob2D = NONE 
     
    3838[Post_1M_stomate_ipcc_history] 
    3939Patches= () 
    40 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC) 
     40GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC) 
    4141TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep) 
    4242ChunckJob2D = NONE 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/lmdz.card

    r2694 r2770  
    55# Physics package to use : 
    66# LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
    7 # LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later 
     7# LMDZ_Physics=NPv3.2 for an early version of the new physics, to be used with LMDZ5/trunk revision 1554 or later 
     8# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later 
    89LMDZ_Physics=AP 
    910 
     
    7475 
    7576[ParametersFiles] 
    76 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    77         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \ 
     77List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \ 
     78        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
     79        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    7880        (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    7981        (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     
    103105 
    104106[OutputText] 
    105 List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
     107List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, vert.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
    106108 
    107109[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/orchidee.card

    r2694 r2770  
    1010 
    1111VEGET_UPDATE=0Y 
    12 LAND_COVER_CHANGE=n 
    1312 
    1413[InitialStateFiles] 
    1514List=   (${R_IN}/SRF/soils_param.nc,        . ), \ 
    1615        (${R_IN}/SRF/routing.nc,            . ), \ 
     16        (${R_IN}/SRF/albedo/alb_bg_jrctip.nc, . ), \ 
    1717        (${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_2000.nc, PFTmap.nc), \ 
    1818        (${R_IN}/SRF/cartepente2d_15min.nc, .) 
     
    2727[ParametersFiles] 
    2828List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\ 
    29         (${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\ 
     29        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\ 
    3030        (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\ 
    3131        (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .) 
     
    3939[OutputFiles] 
    4040List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    41         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \ 
    42         (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE) 
     41        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE) 
    4342 
    4443[Post_1M_sechiba_history] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/stomate.card

    r2694 r2770  
    2929[Post_1M_stomate_history] 
    3030Patches= () 
    31 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas) 
     31GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas) 
    3232TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
    3333ChunckJob2D = NONE 
     
    3838[Post_1M_stomate_ipcc_history] 
    3939Patches= () 
    40 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC) 
     40GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC) 
    4141TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep) 
    4242ChunckJob2D = NONE 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/lmdz.card

    r2694 r2770  
    77# LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
    88# LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later 
     9# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later 
    910LMDZ_Physics=AP 
    10 #LMDZ_Physics=NPv3.1 
    11 #LMDZ_Physics=NPv3.2 
    1211 
    1312# Use XIOS as output library 
     
    6665[InitialStateFiles] 
    6766# start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job 
    68 List=   (${R_IN}/CHM/INCA${RESOL_CHM}/start.nc  , start.nc      ) \ 
    69         (${R_IN}/CHM/INCA${RESOL_CHM}/startphy.nc       , startphy.nc   ) 
    70 # start and starphy for nitrate version  
    71 #List=  (${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc  , start.nc      ) \ 
    72 #       (${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc       , startphy.nc   ) 
     67List=   (${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc  , start.nc      ) \ 
     68        (${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc       , startphy.nc   ) 
    7369 
    7470 
     
    8278 
    8379[ParametersFiles] 
    84 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    85         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \ 
     80List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \ 
     81        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
     82        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    8683        (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    8784        (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     
    110107 
    111108[OutputText] 
    112 List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
     109List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
    113110 
    114111[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card

    r2694 r2770  
    1010 
    1111VEGET_UPDATE=0Y 
    12 LAND_COVER_CHANGE=n 
    1312 
    1413[InitialStateFiles] 
     
    2221ListNonDel= () 
    2322 
     23# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi 
     24#ListNonDel= (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_fertilizer_1995.nc, .), \ 
     25#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_bbg_clim.nc, .), \ 
     26#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nfert.nc, .), \ 
     27#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nmanure.nc, .) 
     28 
    2429[SmoothFiles] 
    2530List= () 
     
    2732[ParametersFiles] 
    2833List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\ 
    29         (${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\ 
     34        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\ 
    3035        (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\ 
    3136        (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .) 
     
    3944[OutputFiles] 
    4045List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    41         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \ 
    42         (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE) 
     46        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE) 
    4347 
    4448[Post_1M_sechiba_history] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/stomate.card

    r2694 r2770  
    2929[Post_1M_stomate_history] 
    3030Patches= () 
    31 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas) 
     31GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas) 
    3232TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
    3333ChunckJob2D = NONE 
     
    3838[Post_1M_stomate_ipcc_history] 
    3939Patches= () 
    40 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC) 
     40GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC) 
    4141TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep) 
    4242ChunckJob2D = NONE 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/CREATE_erai/COMP/lmdz.card

    r2766 r2770  
    3333        (${R_IN}/ATM/Rugos.nc, .), \ 
    3434        (${R_IN}/ATM/landiceref.nc, .) 
    35 ### Please, add the o2a.nc file to fit with the coupled configuration associated 
    36 ### Note that this file is different for different versions of the coupled model 
     35 
     36### Optional: Add the o2a.nc file to fit with the coupled configuration for the  
     37### land-sea mask. This file is different for different versions of the coupled model and 
     38### the different resolutions. Choose between following to fit with IPSLCM6 coupled model: 
     39#       (${R_IN}/ATM/IPSLCM6/eORCA1.1xLMD144142/o2a.nc, o2a.nc) 
    3740#       (${R_IN}/ATM/IPSLCM6/ORCA2.3x9695_v1/o2a.nc, o2a.nc) 
    3841 
    3942[ParametersFiles] 
    40 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    41         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \ 
     43List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def), \ 
     44        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),    \ 
     45        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),   \ 
    4246        (${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \ 
    4347        (${SUBMIT_DIR}/PARAM/run.def, .), \ 
     
    4852 
    4953[OutputText] 
    50 List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, guide.def) 
     54List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def) 
    5155 
    5256[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/lmdz.card

    r2703 r2770  
    77# LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
    88# LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later 
     9# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later 
    910LMDZ_Physics=AP 
    10 #LMDZ_Physics=NPv3.1 
    11 #LMDZ_Physics=NPv3.2 
    1211 
    1312# Use XIOS as output library 
     
    6665[InitialStateFiles] 
    6766# start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job 
    68 List=   (${R_IN}/CHM/INCA${RESOL_CHM}/start.nc  , start.nc      ) \ 
    69         (${R_IN}/CHM/INCA${RESOL_CHM}/startphy.nc       , startphy.nc   ) 
     67List=   (${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc  , start.nc      ) \ 
     68        (${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc       , startphy.nc   ) 
    7069 
    7170 
     
    7978 
    8079[ParametersFiles] 
    81 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    82         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \ 
     80List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \ 
     81        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
     82        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    8383        (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    8484        (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     
    107107 
    108108[OutputText] 
    109 List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
     109List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
    110110 
    111111[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/orchidee.card

    r2765 r2770  
    1010 
    1111VEGET_UPDATE=0Y 
    12 LAND_COVER_CHANGE=n 
    1312 
    1413[InitialStateFiles] 
     
    3332[ParametersFiles] 
    3433List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\ 
    35         (${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\ 
     34        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\ 
    3635        (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\ 
    3736        (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .) 
     
    4544[OutputFiles] 
    4645List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    47         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \ 
    48         (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE) 
     46        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE) 
    4947 
    5048[Post_1M_sechiba_history] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/stomate.card

    r2703 r2770  
    2929[Post_1M_stomate_history] 
    3030Patches= () 
    31 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas) 
     31GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas) 
    3232TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
    3333ChunckJob2D = NONE 
     
    3838[Post_1M_stomate_ipcc_history] 
    3939Patches= () 
    40 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC) 
     40GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC) 
    4141TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep) 
    4242ChunckJob2D = NONE 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/lmdz.card

    r2694 r2770  
    77# LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
    88# LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later 
     9# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later 
    910LMDZ_Physics=AP 
    10 #LMDZ_Physics=NPv3.1 
    11 #LMDZ_Physics=NPv3.2 
    1211 
    1312# Use XIOS as output library 
     
    2423 
    2524# Number of periods where to set parameter adjust=y before switching to adjust=n 
    26 # For adjust=n, set LMDZ_NbPeriod_ajust=0.  
     25# For adjust=n, set LMDZ_NbPeriod_ajust=0. 
    2726LMDZ_NbPeriod_adjust=0 
    2827# LMDZ_NbPeriod_adjust=0 
     
    6665[InitialStateFiles] 
    6766# start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job 
    68 List=   (${R_IN}/CHM/INCA${RESOL_CHM}/start.nc  , start.nc      ) \ 
    69         (${R_IN}/CHM/INCA${RESOL_CHM}/startphy.nc       , startphy.nc   ) 
     67List=   (${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc  , start.nc      ) \ 
     68        (${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc       , startphy.nc   ) 
    7069 
    7170 
     
    7978 
    8079[ParametersFiles] 
    81 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    82         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \ 
     80List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \ 
     81        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
     82        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    8383        (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    8484        (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     
    107107 
    108108[OutputText] 
    109 List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
     109List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
    110110 
    111111[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card

    r2694 r2770  
    1010 
    1111VEGET_UPDATE=0Y 
    12 LAND_COVER_CHANGE=n 
    1312 
    1413[InitialStateFiles] 
     
    2221ListNonDel= () 
    2322 
     23# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi 
     24#ListNonDel= (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_fertilizer_1995.nc, .), \ 
     25#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_bbg_clim.nc, .), \ 
     26#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nfert.nc, .), \ 
     27#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nmanure.nc, .) 
     28 
    2429[SmoothFiles] 
    2530List= () 
     
    2732[ParametersFiles] 
    2833List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\ 
    29         (${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\ 
     34        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\ 
    3035        (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\ 
    3136        (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .) 
     
    3944[OutputFiles] 
    4045List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    41         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \ 
    42         (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE) 
     46        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE) 
    4347 
    4448[Post_1M_sechiba_history] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/stomate.card

    r2694 r2770  
    2929[Post_1M_stomate_history] 
    3030Patches= () 
    31 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas) 
     31GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas) 
    3232TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
    3333ChunckJob2D = NONE 
     
    3838[Post_1M_stomate_ipcc_history] 
    3939Patches= () 
    40 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC) 
     40GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC) 
    4141TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep) 
    4242ChunckJob2D = NONE 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/lmdz.card

    r2694 r2770  
    77# LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources 
    88# LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later 
     9# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later 
    910LMDZ_Physics=AP 
    10 #LMDZ_Physics=NPv3.1 
    11 #LMDZ_Physics=NPv3.2 
    1211 
    1312# Use XIOS as output library 
     
    7978 
    8079[ParametersFiles] 
    81 List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \ 
    82         (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \ 
     80List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \ 
     81        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
     82        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    8383        (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    8484        (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     
    107107 
    108108[OutputText] 
    109 List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
     109List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt) 
    110110 
    111111[OutputFiles] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card

    r2763 r2770  
    1010 
    1111VEGET_UPDATE=0Y 
    12 LAND_COVER_CHANGE=n 
    1312 
    1413[InitialStateFiles] 
     
    3332[ParametersFiles] 
    3433List=   (${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\ 
    35         (${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\ 
     34        (${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\ 
    3635        (${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\ 
    3736        (${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .) 
     
    4544[OutputFiles] 
    4645List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    47         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \ 
    48         (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE) 
     46        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE) 
    4947 
    5048[Post_1M_sechiba_history] 
  • CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/stomate.card

    r2694 r2770  
    2929[Post_1M_stomate_history] 
    3030Patches= () 
    31 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas) 
     31GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas) 
    3232TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
    3333ChunckJob2D = NONE 
     
    3838[Post_1M_stomate_ipcc_history] 
    3939Patches= () 
    40 GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC) 
     40GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC) 
    4141TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep) 
    4242ChunckJob2D = NONE 
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