Changeset 2870


Ignore:
Timestamp:
06/06/16 11:44:36 (5 years ago)
Author:
cetlod
Message:

Update NEMO_v6 configuration to new NEMO revision

Location:
CONFIG/UNIFORM/v6/NEMO_v6
Files:
11 added
5 deleted
21 edited

Legend:

Unmodified
Added
Removed
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/clim/COMP/lim3.card

    r2737 r2870  
    1313[ParametersFiles] 
    1414List=   (${SUBMIT_DIR}/PARAM/namelist_lim3_ref,   namelist_ice_ref),   \ 
    15         (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg) 
     15        (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg),   \ 
     16        (${SUBMIT_DIR}/PARAM/field_def_nemo-lim.xml,   field_def_nemo-lim.xml ),    \ 
     17        (${SUBMIT_DIR}/PARAM/file_def_nemo-lim3.xml,   file_def_nemo-lim.xml ) 
    1618 
    1719[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/clim/COMP/opa9.card

    r2864 r2870  
    4040            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_subbasins_v1.nc, subbasins.nc),\ 
    4141            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc, .),\ 
    42             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_K1_v1.0.nc, K1rowdrg.nc),\ 
    43             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_M2_v1.0.nc, M2rowdrg.nc),\ 
    44             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_maskITF_v1.0.nc, mask_itf.nc),\ 
     42            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_bot.nc, .),\ 
     43            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_pyc.nc, .),\ 
     44            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_cri.nc, .),\ 
     45            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_bot.nc, .),\ 
     46            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_cri.nc, .),\ 
    4547            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_WOA13d1_2_eorca1_bilinear.nc, .),\ 
    4648            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_3D_WOA13d1_2_eorca1_bilinear.nc, .),\ 
     
    5254 
    5355[ParametersFiles] 
    54 List=   (${SUBMIT_DIR}/PARAM/namelist_ref,        namelist_ref),   \ 
    55         (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg),   \ 
    56         (${SUBMIT_DIR}/PARAM/domain_def.xml,      domain_def.xml), \ 
    57         (${SUBMIT_DIR}/PARAM/field_def.xml,       field_def.xml),  \ 
    58         (${SUBMIT_DIR}/PARAM/iodef_lim3.xml,      iodef.xml) 
     56List=   (${SUBMIT_DIR}/PARAM/namelist_ref                       ,  namelist_ref), \ 
     57        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg), \ 
     58        (${SUBMIT_DIR}/PARAM/iodef.xml                          ,  iodef.xml), \ 
     59        (${SUBMIT_DIR}/PARAM/context_nemo.xml                   ,  context_nemo.xml ), \ 
     60        (${SUBMIT_DIR}/PARAM/domain_def_nemo.xml                ,  domain_def_nemo.xml ), \ 
     61        (${SUBMIT_DIR}/PARAM/field_def_nemo-opa.xml             ,  field_def_nemo-opa.xml ), \ 
     62        (${SUBMIT_DIR}/PARAM/file_def_nemo-opa.xml              ,  file_def_nemo-opa.xml ) 
    5963 
    6064 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/clim/COMP/pisces.card

    r2814 r2870  
    2626 
    2727[ParametersFiles] 
    28 List=   (${SUBMIT_DIR}/PARAM/namelist_top_ref         , namelist_top_ref),    \ 
     28List=   (${SUBMIT_DIR}/PARAM/namelist_top_ref                , namelist_top_ref),    \ 
    2929        (${SUBMIT_DIR}/PARAM/namelist_top_${RESOL_OCE}_cfg   , namelist_top_cfg),    \ 
    30         (${SUBMIT_DIR}/PARAM/namelist_pisces_ref      , namelist_pisces_ref), \ 
    31         (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg) 
     30        (${SUBMIT_DIR}/PARAM/namelist_pisces_ref             , namelist_pisces_ref), \ 
     31        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg),     \ 
     32        (${SUBMIT_DIR}/PARAM/field_def_nemo-pisces.xml       ,   field_def_nemo-pisces.xml ), \ 
     33        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml        ,    file_def_nemo-pisces.xml ) 
    3234 
    3335[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/clim/config.card

    r2647 r2870  
    3636#============================ 
    3737#-- Total Number of Processors 
    38 JobNumProcTot=225 
     38JobNumProcTot=512 
    3939#============================ 
    4040#-- Run Options :  
     
    5858Name=nemo 
    5959#D- For each component, Real name of executable 
    60 OCE= (nemo.exe, nemo, 221MPI) 
     60OCE= (nemo.exe, nemo, 496MPI) 
    6161ICE= ("", "", "") 
    6262MBG= ("", "", "") 
    63 IOS= (xios_server.exe, xios.x, 4MPI) 
     63IOS= (xios_server.exe, xios.x, 16MPI) 
    6464#======================================================================== 
    6565#D-- Restarts - 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/ia/COMP/lim3.card

    r2737 r2870  
    1313[ParametersFiles] 
    1414List=   (${SUBMIT_DIR}/PARAM/namelist_lim3_ref,   namelist_ice_ref),   \ 
    15         (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg) 
     15        (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg),   \ 
     16        (${SUBMIT_DIR}/PARAM/field_def_nemo-lim.xml,   field_def_nemo-lim.xml ),    \ 
     17        (${SUBMIT_DIR}/PARAM/file_def_nemo-lim3.xml,   file_def_nemo-lim.xml ) 
    1618 
    1719[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/ia/COMP/opa9.card

    r2864 r2870  
    5050        (${opa9_UserChoices_R_FORCING}/weights_coreII_2_eorca1_bicubic.nc , weights_bicubic.nc) 
    5151 
    52 ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_ahmcoef_v1.0.nc, ahmcoef.nc), \ 
    53             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_bathy_meter_v2.2.nc, bathy_meter.nc), \ 
    54             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_coordinates_v1.0.nc, coordinates.nc), \ 
     52ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/ahmcoef.nc, .), \ 
     53            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/bathy_meter.nc, .), \ 
     54            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/coordinates.nc, . ), \ 
    5555            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/conservative_temperature_WOA13_decav_Reg1L75_clim.nc, .), \ 
    5656            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \ 
     57            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sali_ref_clim_monthly.nc, .), \ 
    5758            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/sss_absolute_salinity_WOA13_decav_Reg1L75_clim.nc, .), \ 
    58             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/absolute_salinity_WOA13_decav_Reg1L75_clim.nc, data_1m_salinity_nomask.nc), \ 
    5959            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Goutorbe_ghflux.nc, .),\ 
    6060            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc, .),\ 
    61             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_subbasins_v1.nc,subbasins.nc),\ 
     61            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/subbasins.nc, .),\ 
    6262            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc, .),\ 
    63             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_K1_v1.0.nc, K1rowdrg.nc),\ 
    64             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_M2_v1.0.nc, M2rowdrg.nc),\ 
    65             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/eORCA_R1_maskITF_v1.0.nc, mask_itf.nc),  \ 
     63            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_bot.nc, .),\ 
     64            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_pyc.nc, .),\ 
     65            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/mixing_power_cri.nc, .),\ 
     66            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_bot.nc, .),\ 
     67            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/decay_scale_cri.nc, .),\ 
    6668            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_WOA13d1_2_eorca1_bilinear.nc, .), \ 
    6769            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/weights_3D_WOA13d1_2_eorca1_bilinear.nc, .), \ 
     
    7072 
    7173 
    72  
    7374[ParametersFiles] 
    74 List=   (${SUBMIT_DIR}/PARAM/namelist_ref,        namelist_ref),   \ 
    75         (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg),   \ 
    76         (${SUBMIT_DIR}/PARAM/domain_def.xml,      domain_def.xml), \ 
    77         (${SUBMIT_DIR}/PARAM/field_def.xml,       field_def.xml),  \ 
    78         (${SUBMIT_DIR}/PARAM/iodef_lim3.xml,      iodef.xml) 
     75List=   (${SUBMIT_DIR}/PARAM/namelist_ref                       ,  namelist_ref), \ 
     76        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg), \ 
     77        (${SUBMIT_DIR}/PARAM/iodef.xml                          ,  iodef.xml), \ 
     78        (${SUBMIT_DIR}/PARAM/context_nemo.xml                   ,  context_nemo.xml ), \ 
     79        (${SUBMIT_DIR}/PARAM/domain_def_nemo.xml                ,  domain_def_nemo.xml ), \ 
     80        (${SUBMIT_DIR}/PARAM/field_def_nemo-opa.xml             ,  field_def_nemo-opa.xml ), \ 
     81        (${SUBMIT_DIR}/PARAM/file_def_nemo-opa.xml              ,  file_def_nemo-opa.xml ) 
    7982 
    8083 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/ia/COMP/pisces.card

    r2737 r2870  
    1010[BoundaryFiles] 
    1111List=   () 
    12 ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/dust_INCA_eORCA_R1.nc, .), \ 
     12ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/DIC_GLODAP_annual_eORCA_R1.nc, .       ), \ 
     13            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Alkalini_GLODAP_annual_eORCA_R1.nc, . ) \ 
     14            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/O2_WOA2009_monthly_eORCA_R1.nc, . ), \ 
     15            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/PO4_WOA2009_monthly_eORCA_R1.nc, .), \ 
     16            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Si_WOA2009_monthly_eORCA_R1.nc, .), \ 
     17            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/DOC_PISCES_monthly_eORCA_R1.nc, .), \ 
     18            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/Fer_PISCES_monthly_eORCA_R1.nc, .), \ 
     19            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/NO3_WOA2009_monthly_eORCA_R1.nc, .), \ 
     20            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/dust_INCA_eORCA_R1.nc, .), \ 
    1321            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/pmarge_etopo_eORCA_R1.nc, .), \ 
    1422            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/river_global_news_eORCA_R1.nc, .), \ 
     
    1826 
    1927[ParametersFiles] 
    20 List=   (${SUBMIT_DIR}/PARAM/namelist_top_ref         , namelist_top_ref),    \ 
     28List=   (${SUBMIT_DIR}/PARAM/namelist_top_ref                , namelist_top_ref),    \ 
    2129        (${SUBMIT_DIR}/PARAM/namelist_top_${RESOL_OCE}_cfg   , namelist_top_cfg),    \ 
    22         (${SUBMIT_DIR}/PARAM/namelist_pisces_ref      , namelist_pisces_ref), \ 
    23         (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg) 
     30        (${SUBMIT_DIR}/PARAM/namelist_pisces_ref             , namelist_pisces_ref), \ 
     31        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg),     \ 
     32        (${SUBMIT_DIR}/PARAM/field_def_nemo-pisces.xml       ,   field_def_nemo-pisces.xml ), \ 
     33        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml        ,    file_def_nemo-pisces.xml ) 
    2434 
    2535[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA1_LIM3_PISCES/ia/config.card

    r2657 r2870  
    3636#============================ 
    3737#-- Total Number of Processors 
    38 JobNumProcTot=225 
     38JobNumProcTot=512 
    3939#============================ 
    4040#-- Run Options :  
     
    4242#============================ 
    4343# config.card configuration options : 
    44 R_BC=$WORKDIR/../../gzi/rgzi002/IGCM/BC 
     44#R_BC=$WORKDIR/../../gzi/rgzi002/IGCM/BC 
    4545#R_INIT=$WORKDIR/../../gzi/rgzi002/IGCM/BC 
    4646#======================================================================== 
     
    5757Name=nemo 
    5858#D- For each component, Real name of executable 
    59 OCE= (nemo.exe, nemo, 221MPI) 
     59OCE= (nemo.exe, nemo, 496MPI) 
    6060ICE= ("", "", "") 
    6161MBG= ("", "", "") 
    62 IOS= (xios_server.exe, xios.x, 4MPI) 
     62IOS= (xios_server.exe, xios.x, 16MPI) 
    6363#======================================================================== 
    6464#D-- Restarts - 
     
    107107[MBG] 
    108108WriteFrequency="1D 1M 1Y" 
    109 Restart= y 
     109Restart= n 
    110110##-- Last day of the experience used as restart 
    111111RestartDate=0169-12-31 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/clim/COMP/lim3.card

    r2656 r2870  
    1313[ParametersFiles] 
    1414List=   (${SUBMIT_DIR}/PARAM/namelist_lim3_ref,   namelist_ice_ref),   \ 
    15         (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg) 
     15        (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg),   \ 
     16        (${SUBMIT_DIR}/PARAM/field_def_nemo-lim.xml,   field_def_nemo-lim.xml ),    \ 
     17        (${SUBMIT_DIR}/PARAM/file_def_nemo-lim3.xml,   file_def_nemo-lim.xml ) 
    1618 
    1719[RestartFiles] 
     
    2628[Post_1M_icemod] 
    2729Patches = () 
    28 GatherWithInternal = (nav_lon, nav_lat, time_counter) 
     30GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds) 
    2931TimeSeriesVars2D = (siconc, sithic, sivtrp, snthic, snvtrp) 
    3032ChunckJob2D = 50Y 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/clim/COMP/opa9.card

    r2864 r2870  
    4646 
    4747[ParametersFiles] 
    48 List=   (${SUBMIT_DIR}/PARAM/namelist_ref             ,  namelist_ref),   \ 
    49         (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg),   \ 
    50         (${SUBMIT_DIR}/PARAM/domain_def.xml,      domain_def.xml), \ 
    51         (${SUBMIT_DIR}/PARAM/field_def.xml,       field_def.xml),  \ 
    52         (${SUBMIT_DIR}/PARAM/iodef_lim3.xml,      iodef.xml) 
     48List=   (${SUBMIT_DIR}/PARAM/namelist_ref                       ,  namelist_ref), \ 
     49        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg), \ 
     50        (${SUBMIT_DIR}/PARAM/iodef.xml                          ,  iodef.xml), \ 
     51        (${SUBMIT_DIR}/PARAM/context_nemo.xml                   ,  context_nemo.xml ), \ 
     52        (${SUBMIT_DIR}/PARAM/domain_def_nemo.xml                ,  domain_def_nemo.xml ), \ 
     53        (${SUBMIT_DIR}/PARAM/field_def_nemo-opa.xml             ,  field_def_nemo-opa.xml ), \ 
     54        (${SUBMIT_DIR}/PARAM/file_def_nemo-opa.xml              ,  file_def_nemo-opa.xml ) 
    5355 
    5456 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/clim/COMP/pisces.card

    r2706 r2870  
    3131        (${SUBMIT_DIR}/PARAM/namelist_top_${RESOL_OCE}_cfg   , namelist_top_cfg),    \ 
    3232        (${SUBMIT_DIR}/PARAM/namelist_pisces_ref             , namelist_pisces_ref), \ 
    33         (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg) 
     33        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg),     \ 
     34        (${SUBMIT_DIR}/PARAM/field_def_nemo-pisces.xml       ,   field_def_nemo-pisces.xml ), \ 
     35        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml        ,    file_def_nemo-pisces.xml ) 
    3436 
    3537[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/ia/COMP/lim3.card

    r2864 r2870  
    1313[ParametersFiles] 
    1414List=   (${SUBMIT_DIR}/PARAM/namelist_lim3_ref,   namelist_ice_ref),   \ 
    15         (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg) 
     15        (${SUBMIT_DIR}/PARAM/namelist_lim3_cfg,   namelist_ice_cfg),   \ 
     16        (${SUBMIT_DIR}/PARAM/field_def_nemo-lim.xml,   field_def_nemo-lim.xml ),    \ 
     17        (${SUBMIT_DIR}/PARAM/file_def_nemo-lim3.xml,   file_def_nemo-lim.xml ) 
    1618 
    1719[RestartFiles] 
     
    2628[Post_1M_icemod] 
    2729Patches = () 
    28 GatherWithInternal = (nav_lon, nav_lat, time_counter) 
     30GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds) 
    2931TimeSeriesVars2D = (siconc, sithic, sivtrp, snthic, snvtrp) 
    3032ChunckJob2D = 50Y 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/ia/COMP/opa9.card

    r2864 r2870  
    6666 
    6767[ParametersFiles] 
    68 List=   (${SUBMIT_DIR}/PARAM/namelist_ref             ,  namelist_ref),   \ 
    69         (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg),   \ 
    70         (${SUBMIT_DIR}/PARAM/domain_def.xml,      domain_def.xml), \ 
    71         (${SUBMIT_DIR}/PARAM/field_def.xml,       field_def.xml),  \ 
    72         (${SUBMIT_DIR}/PARAM/iodef_lim3.xml,      iodef.xml) 
     68List=   (${SUBMIT_DIR}/PARAM/namelist_ref                       ,  namelist_ref), \ 
     69        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_cfg,  namelist_cfg), \ 
     70        (${SUBMIT_DIR}/PARAM/iodef.xml                          ,  iodef.xml), \ 
     71        (${SUBMIT_DIR}/PARAM/context_nemo.xml                   ,  context_nemo.xml ), \ 
     72        (${SUBMIT_DIR}/PARAM/domain_def_nemo.xml                ,  domain_def_nemo.xml ), \ 
     73        (${SUBMIT_DIR}/PARAM/field_def_nemo-opa.xml             ,  field_def_nemo-opa.xml ), \ 
     74        (${SUBMIT_DIR}/PARAM/file_def_nemo-opa.xml              ,  file_def_nemo-opa.xml ) 
    7375 
    7476 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_LIM3_PISCES/ia/COMP/pisces.card

    r2864 r2870  
    3131        (${SUBMIT_DIR}/PARAM/namelist_top_${RESOL_OCE}_cfg   , namelist_top_cfg),    \ 
    3232        (${SUBMIT_DIR}/PARAM/namelist_pisces_ref             , namelist_pisces_ref), \ 
    33         (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg) 
     33        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg, namelist_pisces_cfg),     \ 
     34        (${SUBMIT_DIR}/PARAM/field_def_nemo-pisces.xml       , field_def_nemo-pisces.xml ), \ 
     35        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml        , file_def_nemo-pisces.xml ) 
    3436 
    3537[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_OFF_PISCES/clim/COMP/pisces.card

    r2706 r2870  
    3333 
    3434[ParametersFiles] 
    35 List=   (${SUBMIT_DIR}/PARAM/namelist_ref                    , namelist_ref),    \ 
     35List=   (${SUBMIT_DIR}/PARAM/namelist_ref                                ,  namelist_ref), \ 
    3636        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_offline_cfg            , namelist_cfg),    \ 
    3737        (${SUBMIT_DIR}/PARAM/namelist_top_ref                , namelist_top_ref),    \ 
     
    3939        (${SUBMIT_DIR}/PARAM/namelist_pisces_ref             , namelist_pisces_ref), \ 
    4040        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_offline_cfg, namelist_pisces_cfg),  \ 
    41         (${SUBMIT_DIR}/PARAM/domain_def.xml                  , domain_def.xml), \ 
    42         (${SUBMIT_DIR}/PARAM/field_def.xml                   , field_def.xml),  \ 
    43         (${SUBMIT_DIR}/PARAM/iodef_offline.xml               , iodef.xml) 
     41        (${SUBMIT_DIR}/PARAM/iodef.xml                       ,  iodef.xml), \ 
     42        (${SUBMIT_DIR}/PARAM/context_nemo_offline.xml        ,  context_nemo.xml ), \ 
     43        (${SUBMIT_DIR}/PARAM/domain_def_nemo.xml             ,  domain_def_nemo.xml ), \ 
     44        (${SUBMIT_DIR}/PARAM/field_def_nemo-opa.xml          ,  field_def_nemo-opa.xml ), \ 
     45        (${SUBMIT_DIR}/PARAM/field_def_nemo-pisces.xml       ,  field_def_nemo-opa.xml ), \ 
     46        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml        , file_def_nemo-pisces.xml ) 
     47 
    4448 
    4549[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/EXPERIMENTS/ORCA2_OFF_PISCES/ia/COMP/pisces.card

    r2706 r2870  
    4141 
    4242[ParametersFiles] 
    43 List=   (${SUBMIT_DIR}/PARAM/namelist_ref                    , namelist_ref),    \ 
     43List=   (${SUBMIT_DIR}/PARAM/namelist_ref                                ,  namelist_ref), \ 
    4444        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}${EXPTYPE}_offline_cfg            , namelist_cfg),    \ 
    4545        (${SUBMIT_DIR}/PARAM/namelist_top_ref                , namelist_top_ref),    \ 
     
    4747        (${SUBMIT_DIR}/PARAM/namelist_pisces_ref             , namelist_pisces_ref), \ 
    4848        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_offline_cfg, namelist_pisces_cfg),  \ 
    49         (${SUBMIT_DIR}/PARAM/domain_def.xml                  , domain_def.xml), \ 
    50         (${SUBMIT_DIR}/PARAM/field_def.xml                   , field_def.xml),  \ 
    51         (${SUBMIT_DIR}/PARAM/iodef_offline.xml               , iodef.xml) 
     49        (${SUBMIT_DIR}/PARAM/iodef.xml                       ,  iodef.xml), \ 
     50        (${SUBMIT_DIR}/PARAM/context_nemo_offline.xml        ,  context_nemo.xml ), \ 
     51        (${SUBMIT_DIR}/PARAM/domain_def_nemo.xml             ,  domain_def_nemo.xml ), \ 
     52        (${SUBMIT_DIR}/PARAM/field_def_nemo-opa.xml          ,  field_def_nemo-opa.xml ), \ 
     53        (${SUBMIT_DIR}/PARAM/field_def_nemo-pisces.xml       ,  field_def_nemo-opa.xml ), \ 
     54        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml        , file_def_nemo-pisces.xml ) 
    5255 
    5356[RestartFiles] 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/DRIVER/xios.driver

    r2639 r2870  
    1818    echo UPDATE IOS !!! 
    1919 
    20     sed -e 's/<variable id="using_server"              type="boolean">false/<variable id="using_server" type="boolean">true/' iodef.xml > iodef.xml.tmp 
    21     IGCM_sys_Mv iodef.xml.tmp iodef.xml 
    22  
    2320    IGCM_debug_PopStack "IOS_Update" 
    2421} 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/PARAM/namelist_ORCA1ia_cfg

    r2864 r2870  
    112112   sn_tair     = 't_10'       ,         6         , 'T_10_MOD',   .false.    ,  .false. , 'yearly'  , 'weights_bilinear.nc' , '' 
    113113   sn_humi     = 'q_10'       ,         6         , 'Q_10_MOD',   .false.    ,  .false. , 'yearly'  , 'weights_bilinear.nc' , '' 
    114    sn_prec     = 'precip'     ,        -1         , 'PRC_MOD1',   .true.     ,  .false. , 'yearly'  , 'weights_bilinear.nc' , '' 
     114   sn_prec     = 'precip'     ,        -1         , 'RAIN'    ,   .true.     ,  .false. , 'yearly'  , 'weights_bilinear.nc' , '' 
    115115   sn_snow     = 'snow'       ,        -1         , 'SNOW'    ,   .true.     ,  .false. , 'yearly'  , 'weights_bilinear.nc' , '' 
    116116/ 
     
    314314/ 
    315315!----------------------------------------------------------------------- 
     316&namzdf_tmx_new    !   new tidal mixing parameterization                ("key_zdftmx_new") 
     317!----------------------------------------------------------------------- 
     318   nn_zpyc     = 2         !  pycnocline-intensified dissipation scales as N (=1) or N^2 (=2) 
     319   ln_mevar    = .true.    !  variable (T) or constant (F) mixing efficiency 
     320   ln_tsdiff   = .true.    !  account for differential T/S mixing (T) or not (F) 
     321/ 
     322!----------------------------------------------------------------------- 
    316323&namsol        !   elliptic solver / island / free surface 
    317324!----------------------------------------------------------------------- 
     
    321328!----------------------------------------------------------------------- 
    322329   ln_nnogather=  .true.  ! 
    323    jpni        =    17    !  jpni   number of processors following i (set automatically if < 1) 
    324    jpnj        =    13    !  jpnj   number of processors following j (set automatically if < 1) 
    325    jpnij       =   221    !  jpnij  number of local domains (set automatically if < 1) 
     330   jpni        =    16    !  jpni   number of processors following i (set automatically if < 1) 
     331   jpnj        =    31  !  jpnj   number of processors following j (set automatically if < 1) 
     332   jpnij       =   496    !  jpnij  number of local domains (set automatically if < 1) 
    326333/ 
    327334!----------------------------------------------------------------------- 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/POST/monitoring01_lim3_ORCA1.cfg

    r2829 r2870  
    4444# Temporary fix 
    4545 siconc_north    | "sivolu sithic"  | eORCA1.1_grid.nc | "(sivolu[d=1]/sithic[d=2]"   | "Ice Fraction (NORTH)"            | "-"     | "if lat[d=3] ge 0 then mask[k=1,d=3]*area[d=3]" 
    46  siconc_south    | "sivolu sithic"  | eORCA1.1_grid.nc | "(sivolu[d=1]/sithic[d=2]"   | "Ice Fraction (NORTH)"            | "-"     | "if lat[d=3] le 0 then mask[k=1,d=3]*area[d=3]" 
    47  icesurf_north   | "sivolu sithic"  | eORCA1.1_grid.nc | "(if lat[d=2] ge 0 then sivolu[d=1]/sithic[d=2]*mask[k=1,d=3]*area[d=3])"   | "Ice Volume (NORTH)"    | "m3"    | "2" 
    48  icesurf_south   | "sivolu sithic"  | eORCA1.1_grid.nc | "(if lat[d=2] le 0 then sivolu[d=1]/sithic[d=2]*mask[k=1,d=3]*area[d=3])"   | "Ice Volume (SOUTH)"    | "m3"    | "2" 
     46 siconc_south    | "sivolu sithic"  | eORCA1.1_grid.nc | "(sivolu[d=1]/sithic[d=2]"   | "Ice Fraction (SOUTH)"            | "-"     | "if lat[d=3] le 0 then mask[k=1,d=3]*area[d=3]" 
     47 icesurf_north   | "sivolu sithic"  | eORCA1.1_grid.nc | "(if lat[d=2] ge 0 then sivolu[d=1]/sithic[d=2]*mask[k=1,d=3]*area[d=3])"   | "Ice  Volume (NORTH)"   | "m3"    | "2" 
     48 icesurf_south   | "sivolu sithic"  | eORCA1.1_grid.nc | "(if lat[d=2] le 0 then sivolu[d=1]/sithic[d=2]*mask[k=1,d=3]*area[d=3])"   | "Ice  Volume (SOUTH)"   | "m3"    | "2" 
     49 snowvol_north   | "snvolu"  | eORCA1.1_grid.nc | "(if lat[d=2] ge 0 then snvolu[d=1]*mask[k=1,d=2]*area[d=2])"                      | "Snow Volume (NORTH)"   | "m3"    | "2" 
     50 snowvol_south   | "snvolu"  | eORCA1.1_grid.nc | "(if lat[d=2] le 0 then snvolu[d=1]*mask[k=1,d=2]*area[d=2])"                      | "Snow Volume (SOUTH)"   | "m3"    | "2" 
     51 icevol_north    | "sivolu"  | eORCA1.1_grid.nc | "(if lat[d=2] ge 0 then sivolu[d=1]*mask[k=1,d=2]*area[d=2])"                      | "Ice  Volume (NORTH)"   | "m3"    | "2" 
     52 icevol_south    | "sivolu"  | eORCA1.1_grid.nc | "(if lat[d=2] le 0 then sivolu[d=1]*mask[k=1,d=2]*area[d=2])"                      | "Ice  Volume (SOUTH)"   | "m3"    | "2"   
    4953# 
    50  snowvol_north   | "snvolu"  | eORCA1.1_grid.nc | "(if lat[d=2] ge 0 then snvolu[d=1]*mask[k=1,d=2]*area[d=2])"   | "Snow Volume (NORTH)"   | "m3"    | "2" 
    51  snowvol_south   | "snvolu"  | eORCA1.1_grid.nc | "(if lat[d=3] le 0 then sivolu[d=1]*mask[k=1,d=2]*area[d=2])"   | "Ice Volum  (SOUTH)"    | "m3"    | "2" 
    52  icevol_north    | "sivolu"  | eORCA1.1_grid.nc | "(if lat[d=2] ge 0 then snvolu[d=1]*mask[k=1,d=2]*area[d=2])"   | "Snow Volume (SOUTH)"   | "m3"    | "2" 
    53  icevol_south    | "sivolu"  | eORCA1.1_grid.nc | "(if lat[d=2] le 0 then snvolu[d=1]*mask[k=1,d=2]*area[d=2])"   | "Snow Volume (SOUTH)"   | "m3"    | "2" 
    5454 iicethic_north  | "sithic"  | eORCA1.1_grid.nc | "(sithic[d=1])"   | "Ice thickness (NORTH)"           | "m"     | "if lat[d=2] ge 0 then mask[k=1,d=2]*area[d=2]" 
    5555 iicethic_south  | "sithic"  | eORCA1.1_grid.nc | "(sithic[d=1])"   | "Ice thickness (SOUTH)"           | "m"     | "if lat[d=2] le 0 then mask[k=1,d=2]*area[d=2]" 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/POST/monitoring01_pisces_ORCA1.cfg

    r2836 r2870  
    3939#  field | files patterns | files additionnal  | operations | title | units | calcul of area 
    4040#----------------------------------------------------------------------------------------------------------------- 
     41 no3_global  | "NO3"      | "eORCA1.1_grid.nc"  | "(NO3[d=1,k=1])"               | "Nitrate Concentration at surface"      | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     42 dic_global  | "DIC"      | "eORCA1.1_grid.nc"  | "(DIC[d=1,k=1])"               | "DIC Concentration at surface"          | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     43 alk_global  | "Alkalini" | "eORCA1.1_grid.nc"  | "(Alkalini[d=1,k=1])"          | "Alkalinity Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     44 o2_global   | "O2"       | "eORCA1.1_grid.nc"  | "(O2[d=1,k=1])"                | "Oxygen Concentration at surface"       | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     45 si_global   | "Si"       | "eORCA1.1_grid.nc"  | "(Si[d=1,k=1])"                | "Silicate Concentration at surface"     | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     46 po4_global  | "PO4"      | "eORCA1.1_grid.nc"  | "(PO4[d=1,k=1])"               | "Phosphorus Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     47 cflx_global | "Cflx"     | "eORCA1.1_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"            | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
     48 epc_global  | "EPC100"   | "eORCA1.1_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"        | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    4149#----------------------------------------------------------------------------------------------------------------- 
    42  no3_global  | "NO3"      | "eORCA1.1_grid.nc"  | "(NO3[d=1])"                   | "Nitrate Concentration (GLOBAL)"      | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    43  dic_global  | "DIC"      | "eORCA1.1_grid.nc"  | "(DIC[d=1])"                   | "DIC Concentration (GLOBAL)"          | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    44  alk_global  | "Alkalini" | "eORCA1.1_grid.nc"  | "(Alkalini[d=1])"              | "Alkalinity Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    45  o2_global   | "O2"       | "eORCA1.1_grid.nc"  | "(O2[d=1])"                    | "Oxygen Concentration (GLOBAL)"       | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    46  si_global   | "Si"       | "eORCA1.1_grid.nc"  | "(Si[d=1])"                    | "Silicate Concentration (GLOBAL)"     | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    47  po4_global  | "PO4"      | "eORCA1.1_grid.nc"  | "(PO4[d=1])"                   | "Phosphorus Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    48  cflx_global | "Cflx"     | "eORCA1.1_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"          | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    49  epc_global  | "EPC100"   | "eORCA1.1_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"      | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    50 #----------------------------------------------------------------------------------------------------------------- 
  • CONFIG/UNIFORM/v6/NEMO_v6/GENERAL/POST/monitoring01_pisces_ORCA2.cfg

    r2835 r2870  
    3939#  field | files patterns | files additionnal  | operations | title | units | calcul of area 
    4040#----------------------------------------------------------------------------------------------------------------- 
    41  no3_global  | "NO3"      | "ORCA2.3_grid.nc"  | "(NO3[d=1])"                   | "Nitrate Concentration (GLOBAL)"      | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    42  dic_global  | "DIC"      | "ORCA2.3_grid.nc"  | "(DIC[d=1])"                   | "DIC Concentration (GLOBAL)"          | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    43  alk_global  | "Alkalini" | "ORCA2.3_grid.nc"  | "(Alkalini[d=1])"              | "Alkalinity Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    44  o2_global   | "O2"       | "ORCA2.3_grid.nc"  | "(O2[d=1])"                    | "Oxygen Concentration (GLOBAL)"       | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    45  si_global   | "Si"       | "ORCA2.3_grid.nc"  | "(Si[d=1])"                    | "Silicate Concentration (GLOBAL)"     | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    46  po4_global  | "PO4"      | "ORCA2.3_grid.nc"  | "(PO4[d=1])"                   | "Phosphorus Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    47  cflx_global | "Cflx"     | "ORCA2.3_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"          | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    48  epc_global  | "EPC100"   | "ORCA2.3_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"      | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
     41 no3_global  | "NO3"      | "ORCA2.3_grid.nc"  | "(NO3[d=1,k=1])"               | "Nitrate Concentration at surface"      | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     42 dic_global  | "DIC"      | "ORCA2.3_grid.nc"  | "(DIC[d=1,k=1])"               | "DIC Concentration at surface"          | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     43 alk_global  | "Alkalini" | "ORCA2.3_grid.nc"  | "(Alkalini[d=1,k=1])"          | "Alkalinity Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     44 o2_global   | "O2"       | "ORCA2.3_grid.nc"  | "(O2[d=1,k=1])"                | "Oxygen Concentration at surface"       | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     45 si_global   | "Si"       | "ORCA2.3_grid.nc"  | "(Si[d=1,k=1])"                | "Silicate Concentration at surface"     | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     46 po4_global  | "PO4"      | "ORCA2.3_grid.nc"  | "(PO4[d=1,k=1])"               | "Phosphorus Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     47 cflx_global | "Cflx"     | "ORCA2.3_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"            | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
     48 epc_global  | "EPC100"   | "ORCA2.3_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"        | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    4949#----------------------------------------------------------------------------------------------------------------- 
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