Changeset 2878


Ignore:
Timestamp:
06/07/16 16:08:38 (5 years ago)
Author:
cetlod
Message:

Update namelist parameters file, sources files & xml files according to new NEMO revision

Location:
CONFIG/UNIFORM/v6/IPSLCM6
Files:
4 deleted
9 edited

Legend:

Unmodified
Added
Removed
  • CONFIG/UNIFORM/v6/IPSLCM6/AA_make

    r2876 r2878  
    9494 
    9595orca1lim3: ../../modeles/NEMOGCM/CONFIG 
    96         (cd ../../modeles/NEMOGCM/CONFIG ; cp ../../../config/IPSLCM6/SOURCES/NEMO/*.*90 ORCA1_LIM3_PISCES/MY_SRC/ ; cp ../../../config/IPSLCM6/SOURCES/NEMO/arch-${FCM_ARCH}.fcm ../ARCH/. ; cp ../../../config/IPSLCM6/SOURCES/NEMO/*.cfg ../TOOLS/COMPILE/. ; ./makenemo -m ${FCM_ARCH} -n ORCA1_LIM3_PISCES -d "OPA_SRC LIM_SRC_3 NST_SRC TOP_SRC" -j16 add_key "key_oasis3 key_top key_pisces key_diahth"  del_key "key_mpp_rep key_nosignedzero                  " ; cp ORCA1_LIM3_PISCES/BLD/bin/nemo.exe ../../../bin/opa ; ) 
     96        (cd ../../modeles/NEMOGCM/CONFIG ; cp ../../../config/IPSLCM6/SOURCES/NEMO/*.*90 ORCA1_LIM3_PISCES/MY_SRC/ ; cp ../../../config/IPSLCM6/SOURCES/NEMO/arch-${FCM_ARCH}.fcm ../ARCH/. ; cp ../../../config/IPSLCM6/SOURCES/NEMO/*.cfg ../TOOLS/COMPILE/. ; ./makenemo -m ${FCM_ARCH} -n ORCA1_LIM3_PISCES -d "OPA_SRC LIM_SRC_3 NST_SRC TOP_SRC" -j16 add_key "key_oasis3 key_diahth"  del_key "key_mpp_rep key_nosignedzero                  " ; cp ORCA1_LIM3_PISCES/BLD/bin/nemo.exe ../../../bin/opa ; ) 
    9797 
    9898orca1lim3nopisces: ../../modeles/NEMOGCM/CONFIG 
  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/pdControl/COMP/opa9.card

    r2876 r2878  
    2626            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc               ,  . ), \ 
    2727            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/weights_reg05_2_eorca1_bilinear.nc                   ,  . ), \ 
     28            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/mixing_power_bot.nc                                  ,  . ), \ 
     29            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/mixing_power_pyc.nc                                  ,  . ), \ 
     30            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/mixing_power_cri.nc                                  ,  . ), \ 
     31            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/decay_scale_bot.nc                                   ,  . ), \ 
     32            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/decay_scale_cri.nc                                   ,  . ), \ 
    2833            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/vosaline_360x180-ORCA1_WOA13_climatemonth.nc         , sali_ref_clim_monthly.nc ) 
    2934 
  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/piControl/COMP/opa9.card

    r2876 r2878  
    2626            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc               ,  . ), \ 
    2727            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/weights_reg05_2_eorca1_bilinear.nc                   ,  . ), \ 
     28            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/mixing_power_bot.nc                                  ,  . ), \ 
     29            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/mixing_power_pyc.nc                                  ,  . ), \ 
     30            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/mixing_power_cri.nc                                  ,  . ), \ 
     31            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/decay_scale_bot.nc                                   ,  . ), \ 
     32            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/decay_scale_cri.nc                                   ,  . ), \ 
    2833            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/vosaline_360x180-ORCA1_WOA13_climatemonth.nc         , sali_ref_clim_monthly.nc ) 
    2934 
  • CONFIG/UNIFORM/v6/IPSLCM6/GENERAL/PARAM/field_def_nemo.xml

    r2789 r2878  
    259259         <field id="v_imasstr"    long_name="Sea-ice mass transport along j-axis"                          standard_name="sea_ice_y_transport"                                unit="kg/s"         /> 
    260260         <field id="emp_x_sst"    long_name="Concentration/Dilution term on SST"                                                                                              unit="kg*degC/m2/s" /> 
    261          <field id="emp_x_sss"    long_name="Concentration/Dilution term on SSS"                                                                                              unit="kg*1e-3/m2/s" />         
     261         <field id="emp_x_sss"    long_name="Concentration/Dilution term on SSS"                                                                                              unit="kg*1e-3/m2/s" />    
     262         <field id="rnf_x_sst"    long_name="Runoff term on SST"                                                                                                              unit="kg*degC/m2/s" /> 
     263         <field id="rnf_x_sss"    long_name="Runoff term on SSS"                                                                                                              unit="kg*1e-3/m2/s" />      
    262264        
    263265         <field id="iceconc"      long_name="ice concentration"                                            standard_name="sea_ice_area_fraction"                              unit="%"            /> 
     
    311313         <field id="sfxsni"       long_name="salt flux from snow-ice formation"                            unit="1e-3*kg/m2/day" /> 
    312314         <field id="sfxopw"       long_name="salt flux from open water ice formation"                      unit="1e-3*kg/m2/day" /> 
     315         <field id="sfxsub"       long_name="salt flux from sublimation"                                   unit="1e-3*kg/m2/day" /> 
    313316         <field id="sfx"          long_name="salt flux total"                                              unit="1e-3*kg/m2/day" /> 
    314317 
  • CONFIG/UNIFORM/v6/IPSLCM6/GENERAL/PARAM/file_def_nemo-opa.xml

    r2876 r2878  
    3737        
    3838        <file id="file2" name_suffix="_scalar" description="scalar variables" enabled=".true." > 
    39       <field field_ref="voltot"  grid_ref="grid_1point"     name="scvoltot"  /> 
    40       <field field_ref="sshtot"  grid_ref="grid_1point"     name="scsshtot"  /> 
    41       <field field_ref="sshsteric" grid_ref="grid_1point"   name="scsshste"  /> 
    42       <field field_ref="sshthster" grid_ref="grid_1point"   name="scsshtst"  /> 
    43       <field field_ref="masstot"   grid_ref="grid_1point"   name="scmastot"  /> 
    44       <field field_ref="temptot"   grid_ref="grid_1point"   name="sctemtot"  /> 
    45       <field field_ref="saltot"    grid_ref="grid_1point"   name="scsaltot"  /> 
     39           <field field_ref="voltot"      grid_ref="grid_1point"     name="scvoltot"  /> 
     40           <field field_ref="sshtot"      grid_ref="grid_1point"     name="scsshtot"  /> 
     41           <field field_ref="sshsteric"  grid_ref="grid_1point"   name="scsshste"  /> 
     42           <field field_ref="sshthster"  grid_ref="grid_1point"   name="scsshtst"  /> 
     43           <field field_ref="masstot"     grid_ref="grid_1point"   name="scmastot"  /> 
     44           <field field_ref="temptot"     grid_ref="grid_1point"   name="sctemtot"  /> 
     45           <field field_ref="saltot"      grid_ref="grid_1point"   name="scsaltot"  /> 
    4646 
    4747          <field field_ref="bgtemper"     grid_ref="grid_1point" name="bgtemper"    /> 
     
    179179      <!-- <field field_ref="28d"           level="1" /> --> 
    180180      <field field_ref="hc300"         level="1" /> 
     181      <!-- next variables are additional for PISCES offline--> 
     182          <field field_ref="hdiv"         name="hdivtr"   long_name="horizontal divergence transport"      operation="average" freq_op="1mo" > @hdiv * @e3t </field> 
     183          <field field_ref="wspd"         name="windsp"  /> 
     184          <field field_ref="empbmr"       name="wfob"     long_name="water_flux_into_sea_water at prev time-step"    /> 
     185          <field field_ref="fmmflx"       name="fmmflx"  /> 
     186          <field field_ref="iceconc"      name="siconc"  /> 
    181187        </file> 
    182188 
     
    186192          <field field_ref="uoce"         name="uo"      long_name="sea_water_x_velocity" operation="average" freq_op="1mo" > @uoce_e3u / @e3u </field> 
    187193          <field field_ref="utau"         name="tauuo"   long_name="surface_downward_x_stress" /> 
     194          <field field_ref="uocetr_eff"   name="uocetr_eff"  /> 
     195          <field field_ref="ahu_bbl"       /> 
    188196      <!-- available with key_diaar5 --> 
    189197      <field field_ref="u_masstr"     name="vozomatr"  /> 
     
    197205          <field field_ref="voce"         name="vo"      long_name="sea_water_y_velocity" operation="average" freq_op="1mo" > @voce_e3v / @e3v </field> 
    198206          <field field_ref="vtau"         name="tauvo"   long_name="surface_downward_y_stress" /> 
     207          <field field_ref="vocetr_eff"   name="vocetr_eff"  /> 
     208          <field field_ref="ahv_bbl"       /> 
    199209      <!-- available with key_diaar5 --> 
    200210      <field field_ref="v_masstr"     name="vomematr"  /> 
     
    208218          <field field_ref="avt"          name="difvho"  long_name="ocean_vertical_heat_diffusivity" /> 
    209219          <field field_ref="w_masstr"     name="vovematr"  /> 
     220          <field field_ref="logavs"       name="difvsolog"  long_name="ocean_vertical_salt_diffusivity" operation="average" freq_op="1mo" > exp( @logavs ) </field> 
     221          <field field_ref="aht2d"        name="ahtt"   /> 
     222          <field field_ref="aht2d_eiv"    name="aeiv"   /> 
    210223        </file> 
    211224 
     
    374387      <field field_ref="avt"          name="difvho"  long_name="ocean_vertical_heat_diffusivity" /> 
    375388      <field field_ref="wocetr_eff"   name="wocetr_eff"  /> 
     389      <field field_ref="avt_evd"      name="avt_evd"    /> 
     390      <field field_ref="av_wave"      name="av_wave"    /> 
     391      <field field_ref="bn2"          name="bn2"        /> 
     392      <field field_ref="bflx_tmx"     name="bflx_tmx"   /> 
     393      <field field_ref="pcmap_tmx"    name="pcmap_tmx"  /> 
     394      <field field_ref="emix_tmx"     name="emix_tmx"   /> 
     395      <field field_ref="av_ratio"     name="av_ratio"   /> 
    376396    </file> 
    377397 
  • CONFIG/UNIFORM/v6/IPSLCM6/GENERAL/PARAM/file_def_nemo-pisces.xml

    r2876 r2878  
    146146        <field field_ref="EPCAL100"  name="EPCAL100"  /> 
    147147        <field field_ref="xfracal"   name="xfracal"  /> 
    148         <field field_ref="GRAZ1"     name="GRAZT" operation="average" freq_op="1y" > @GRAZ1 + @GRAZ2 </field>  
    149148    </file> 
    150149 
  • CONFIG/UNIFORM/v6/IPSLCM6/GENERAL/PARAM/namelist_ORCA1_cfg

    r2825 r2878  
    129129   sn_chl      ='merged_ESACCI_BIOMER4V1R1_CHL_REG05',  -1  , 'CHLA' , .true. , .true. , 'yearly' , 'weights_reg05_2_eorca1_bilinear.nc' , '' , '' 
    130130   ln_traqsr   = .true.    !  Light penetration (T) or not (F) 
    131    nn_chldta   =      2    !  RGB : 2D Chl data (=1), 3D Chl data (=2) or cst value (=0) 
     131   ln_qsr_rgb  = .false.   !  RGB (Red-Green-Blue) light penetration 
     132   ln_qsr_2bd  = .false.   !  2 bands              light penetration 
     133   ln_qsr_bio  = .true.    !  bio-model light penetration 
    132134/ 
    133135!----------------------------------------------------------------------- 
     
    346348/ 
    347349!----------------------------------------------------------------------- 
     350&namzdf_tmx_new    !   new tidal mixing parameterization                ("key_zdftmx_new") 
     351!----------------------------------------------------------------------- 
     352   nn_zpyc     = 2         !  pycnocline-intensified dissipation scales as N (=1) or N^2 (=2) 
     353   ln_mevar    = .true.    !  variable (T) or constant (F) mixing efficiency 
     354   ln_tsdiff   = .true.    !  account for differential T/S mixing (T) or not (F) 
     355/ 
     356!----------------------------------------------------------------------- 
    348357&namsol        !   elliptic solver / island / free surface 
    349358!----------------------------------------------------------------------- 
  • CONFIG/UNIFORM/v6/IPSLCM6/GENERAL/POST/monitoring01_pisces_ORCA1.cfg

    r2837 r2878  
    3939#  field | files patterns | files additionnal  | operations | title | units | calcul of area 
    4040#----------------------------------------------------------------------------------------------------------------- 
     41 no3_global  | "NO3"      | "eORCA1.1_grid.nc"  | "(NO3[d=1,k=1])"               | "Nitrate Concentration at surface"      | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     42 dic_global  | "DIC"      | "eORCA1.1_grid.nc"  | "(DIC[d=1,k=1])"               | "DIC Concentration at surface"          | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     43 alk_global  | "Alkalini" | "eORCA1.1_grid.nc"  | "(Alkalini[d=1,k=1])"          | "Alkalinity Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     44 o2_global   | "O2"       | "eORCA1.1_grid.nc"  | "(O2[d=1,k=1])"                | "Oxygen Concentration at surface"       | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     45 si_global   | "Si"       | "eORCA1.1_grid.nc"  | "(Si[d=1,k=1])"                | "Silicate Concentration at surface"     | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     46 po4_global  | "PO4"      | "eORCA1.1_grid.nc"  | "(PO4[d=1,k=1])"               | "Phosphorus Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     47 cflx_global | "Cflx"     | "eORCA1.1_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"            | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
     48 epc_global  | "EPC100"   | "eORCA1.1_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"        | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    4149#----------------------------------------------------------------------------------------------------------------- 
    42  no3_global  | "NO3"      | "eORCA1.1_grid.nc"  | "(NO3[d=1])"                   | "Nitrate Concentration (GLOBAL)"      | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    43  dic_global  | "DIC"      | "eORCA1.1_grid.nc"  | "(DIC[d=1])"                   | "DIC Concentration (GLOBAL)"          | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    44  alk_global  | "Alkalini" | "eORCA1.1_grid.nc"  | "(Alkalini[d=1])"              | "Alkalinity Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    45  o2_global   | "O2"       | "eORCA1.1_grid.nc"  | "(O2[d=1])"                    | "Oxygen Concentration (GLOBAL)"       | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    46  si_global   | "Si"       | "eORCA1.1_grid.nc"  | "(Si[d=1])"                    | "Silicate Concentration (GLOBAL)"     | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    47  po4_global  | "PO4"      | "eORCA1.1_grid.nc"  | "(PO4[d=1])"                   | "Phosphorus Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    48  cflx_global | "Cflx"     | "eORCA1.1_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"          | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    49  epc_global  | "EPC100"   | "eORCA1.1_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"      | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    50 #----------------------------------------------------------------------------------------------------------------- 
  • CONFIG/UNIFORM/v6/IPSLCM6/GENERAL/POST/monitoring01_pisces_ORCA2.cfg

    r2837 r2878  
    3939#  field | files patterns | files additionnal  | operations | title | units | calcul of area 
    4040#----------------------------------------------------------------------------------------------------------------- 
    41  no3_global  | "NO3"      | "ORCA2.3_grid.nc"  | "(NO3[d=1])"                   | "Nitrate Concentration (GLOBAL)"      | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    42  dic_global  | "DIC"      | "ORCA2.3_grid.nc"  | "(DIC[d=1])"                   | "DIC Concentration (GLOBAL)"          | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    43  alk_global  | "Alkalini" | "ORCA2.3_grid.nc"  | "(Alkalini[d=1])"              | "Alkalinity Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    44  o2_global   | "O2"       | "ORCA2.3_grid.nc"  | "(O2[d=1])"                    | "Oxygen Concentration (GLOBAL)"       | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    45  si_global   | "Si"       | "ORCA2.3_grid.nc"  | "(Si[d=1])"                    | "Silicate Concentration (GLOBAL)"     | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    46  po4_global  | "PO4"      | "ORCA2.3_grid.nc"  | "(PO4[d=1])"                   | "Phosphorus Concentration (GLOBAL)"   | "mmol/m3"    | "mask[d=2]*volume[d=2]" 
    47  cflx_global | "Cflx"     | "ORCA2.3_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"          | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    48  epc_global  | "EPC100"   | "ORCA2.3_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"      | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
     41 no3_global  | "NO3"      | "ORCA2.3_grid.nc"  | "(NO3[d=1,k=1])"               | "Nitrate Concentration at surface"      | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     42 dic_global  | "DIC"      | "ORCA2.3_grid.nc"  | "(DIC[d=1,k=1])"               | "DIC Concentration at surface"          | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     43 alk_global  | "Alkalini" | "ORCA2.3_grid.nc"  | "(Alkalini[d=1,k=1])"          | "Alkalinity Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     44 o2_global   | "O2"       | "ORCA2.3_grid.nc"  | "(O2[d=1,k=1])"                | "Oxygen Concentration at surface"       | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     45 si_global   | "Si"       | "ORCA2.3_grid.nc"  | "(Si[d=1,k=1])"                | "Silicate Concentration at surface"     | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     46 po4_global  | "PO4"      | "ORCA2.3_grid.nc"  | "(PO4[d=1,k=1])"               | "Phosphorus Concentration  at surface"  | "mmol/m3"    | "mask[d=2,k=1]*area[d=2]" 
     47 cflx_global | "Cflx"     | "ORCA2.3_grid.nc"  | "(Cflx[d=1]*3600*24*365*12)"   | "Ocean carbon flux (GLOBAL)"            | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
     48 epc_global  | "EPC100"   | "ORCA2.3_grid.nc"  | "(EPC100[d=1]*3600*24*365*12)" | "Carbon export at 100m (GLOBAL)"        | "gC/m2/yr"   | "mask[k=1,d=2]*area[d=2]" 
    4949#----------------------------------------------------------------------------------------------------------------- 
Note: See TracChangeset for help on using the changeset viewer.