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nc4_data_output.cpp @ 902

Last change on this file since 902 was 902, checked in by oabramkina, 7 years ago

Sequential version of new functionalities for mesh connectivity:

edge_faces
face_edges
face_face.

Compilation error of version 900 resolved.

Property copyright set to
Software name : XIOS (Xml I/O Server)
http://forge.ipsl.jussieu.fr/ioserver
Creation date : January 2009
Licence : CeCCIL version2
see license file in root directory : Licence_CeCILL_V2-en.txt
or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
CNRS/IPSL (Institut Pierre Simon Laplace)
Project Manager : Yann Meurdesoif
yann.meurdesoif@cea.fr
Property svn:executable set to *

File size: 106.6 KB

Line
1	#include "nc4_data_output.hpp"
2
3	#include <boost/lexical_cast.hpp>
4	#include "attribute_template.hpp"
5	#include "group_template.hpp"
6
7	#include "file.hpp"
8	#include "calendar.hpp"
9	#include "context.hpp"
10	#include "context_server.hpp"
11	#include "netCdfException.hpp"
12	#include "exception.hpp"
13
14	namespace xios
15	{
16	/// ////////////////////// Dfinitions ////////////////////// ///
17	CNc4DataOutput::CNc4DataOutput
18	(const StdString & filename, bool exist)
19	: SuperClass()
20	, SuperClassWriter(filename, exist)
21	, filename(filename)
22	{
23	SuperClass::type = MULTI_FILE;
24	}
25
26	CNc4DataOutput::CNc4DataOutput
27	(const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention,
28	MPI_Comm comm_file,bool multifile, bool isCollective, const StdString& timeCounterName)
29	: SuperClass()
30	, SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName)
31	, comm_file(comm_file)
32	, filename(filename)
33	, isCollective(isCollective)
34	{
35	SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE;
36	}
37
38	CNc4DataOutput::~CNc4DataOutput(void)
39	{ /* Ne rien faire de plus */ }
40
41	///--------------------------------------------------------------
42
43	const StdString & CNc4DataOutput::getFileName(void) const
44	{
45	return (this->filename);
46	}
47
48	//---------------------------------------------------------------
49
50	void CNc4DataOutput::writeDomain_(CDomain* domain)
51	{
52	if (domain->type == CDomain::type_attr::unstructured)
53	{
54	if (SuperClassWriter::useCFConvention)
55	writeUnstructuredDomain(domain) ;
56	else
57	writeUnstructuredDomainUgrid(domain) ;
58	return ;
59	}
60
61	CContext* context = CContext::getCurrent() ;
62	CContextServer* server=context->server ;
63
64	if (domain->IsWritten(this->filename)) return;
65	domain->checkAttributes();
66
67	if (domain->isEmpty())
68	if (SuperClass::type==MULTI_FILE) return;
69
70	std::vector<StdString> dim0, dim1;
71	StdString domid = domain->getDomainOutputName();
72	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
73	if (isWrittenDomain(domid)) return ;
74	else setWrittenDomain(domid);
75
76
77	StdString dimXid, dimYid ;
78
79	bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear);
80	switch (domain->type)
81	{
82	case CDomain::type_attr::curvilinear :
83	dimXid = StdString("x").append(appendDomid);
84	dimYid = StdString("y").append(appendDomid);
85	break ;
86	case CDomain::type_attr::rectilinear :
87	dimXid = StdString("lon").append(appendDomid);
88	dimYid = StdString("lat").append(appendDomid);
89	break;
90	}
91
92	StdString dimVertId = StdString("nvertex").append(appendDomid);
93
94	string lonid,latid,bounds_lonid,bounds_latid ;
95	string areaId = "area" + appendDomid;
96	/*
97	StdString lonid_loc = (server->intraCommSize > 1)
98	? StdString("lon").append(appendDomid).append("_local")
99	: lonid;
100	StdString latid_loc = (server->intraCommSize > 1)
101	? StdString("lat").append(appendDomid).append("_local")
102	: latid;
103	*/
104
105	try
106	{
107	switch (SuperClass::type)
108	{
109	case (MULTI_FILE) :
110	{
111	// if (domain->isEmpty()) return;
112
113	if (server->intraCommSize > 1)
114	{
115	// SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue());
116	// SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue());
117	}
118
119	switch (domain->type)
120	{
121	case CDomain::type_attr::curvilinear :
122	dim0.push_back(dimYid); dim0.push_back(dimXid);
123	lonid = StdString("nav_lon").append(appendDomid);
124	latid = StdString("nav_lat").append(appendDomid);
125	break ;
126	case CDomain::type_attr::rectilinear :
127	lonid = StdString("lon").append(appendDomid);
128	latid = StdString("lat").append(appendDomid);
129	dim0.push_back(dimYid);
130	dim1.push_back(dimXid);
131	break;
132	}
133
134	bounds_lonid = StdString("bounds_lon").append(appendDomid);
135	bounds_latid = StdString("bounds_lat").append(appendDomid);
136
137	SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv);
138	SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv);
139
140	if (domain->hasBounds)
141	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
142
143	if (server->intraCommSize > 1)
144	{
145	this->writeLocalAttributes(domain->zoom_ibegin_srv,
146	domain->zoom_ni_srv,
147	domain->zoom_jbegin_srv,
148	domain->zoom_nj_srv,
149	appendDomid);
150
151	if (singleDomain)
152	this->writeLocalAttributes_IOIPSL(dimXid, dimYid,
153	domain->zoom_ibegin_srv,
154	domain->zoom_ni_srv,
155	domain->zoom_jbegin_srv,
156	domain->zoom_nj_srv,
157	domain->ni_glo,domain->nj_glo,
158	server->intraCommRank,server->intraCommSize);
159	}
160
161	if (domain->hasLonLat)
162	{
163	switch (domain->type)
164	{
165	case CDomain::type_attr::curvilinear :
166	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
167	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
168	break ;
169	case CDomain::type_attr::rectilinear :
170	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
171	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1);
172	break ;
173	}
174
175	this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
176	this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
177
178	if (domain->hasBounds)
179	{
180	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
181	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
182
183	dim0.clear();
184	dim0.push_back(dimYid);
185	dim0.push_back(dimXid);
186	dim0.push_back(dimVertId);
187	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
188	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
189	}
190	}
191
192	dim0.clear();
193	dim0.push_back(dimYid);
194	dim0.push_back(dimXid);
195
196
197	// supress mask if (server->intraCommSize > 1)
198	// supress mask {
199	// supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0);
200	// supress mask
201	// supress mask this->writeMaskAttributes(maskid,
202	// supress mask domain->data_dim.getValue()/*,
203	// supress mask domain->data_ni.getValue(),
204	// supress mask domain->data_nj.getValue(),
205	// supress mask domain->data_ibegin.getValue(),
206	// supress mask domain->data_jbegin.getValue()*/);
207	// supress mask }
208
209	//SuperClassWriter::setDefaultValue(maskid, &dvm);
210
211	if (domain->hasArea)
212	{
213	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
214	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
215	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
216	}
217
218	SuperClassWriter::definition_end();
219
220	if (domain->hasLonLat)
221	{
222	switch (domain->type)
223	{
224	case CDomain::type_attr::curvilinear :
225	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0);
226	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0);
227	break;
228	case CDomain::type_attr::rectilinear :
229	CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ;
230	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0);
231	CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ;
232	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0);
233	break;
234	}
235
236	if (domain->hasBounds)
237	{
238	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0);
239	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0);
240	}
241	}
242
243	if (domain->hasArea)
244	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0);
245
246	SuperClassWriter::definition_start();
247
248	break;
249	}
250	case (ONE_FILE) :
251	{
252	SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni);
253	SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj);
254
255	if (domain->hasBounds)
256	SuperClassWriter::addDimension(dimVertId, domain->nvertex);
257
258	if (domain->hasLonLat)
259	{
260	switch (domain->type)
261	{
262	case CDomain::type_attr::curvilinear :
263	dim0.push_back(dimYid); dim0.push_back(dimXid);
264	lonid = StdString("nav_lon").append(appendDomid);
265	latid = StdString("nav_lat").append(appendDomid);
266	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
267	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
268	break;
269
270	case CDomain::type_attr::rectilinear :
271	dim0.push_back(dimYid);
272	dim1.push_back(dimXid);
273	lonid = StdString("lon").append(appendDomid);
274	latid = StdString("lat").append(appendDomid);
275	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
276	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1);
277	break;
278	}
279
280	bounds_lonid = StdString("bounds_lon").append(appendDomid);
281	bounds_latid = StdString("bounds_lat").append(appendDomid);
282
283	this->writeAxisAttributes
284	(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid);
285	this->writeAxisAttributes
286	(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid);
287
288	if (domain->hasBounds)
289	{
290	SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid);
291	SuperClassWriter::addAttribute("bounds", bounds_latid, &latid);
292
293	dim0.clear();
294	dim0.push_back(dimYid);
295	dim0.push_back(dimXid);
296	dim0.push_back(dimVertId);
297	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
298	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
299	}
300	}
301
302	if (domain->hasArea)
303	{
304	dim0.clear();
305	dim0.push_back(dimYid); dim0.push_back(dimXid);
306	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
307	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
308	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
309	dim0.clear();
310	}
311
312	SuperClassWriter::definition_end();
313
314	switch (domain->type)
315	{
316	case CDomain::type_attr::curvilinear :
317	{
318	std::vector<StdSize> start(2) ;
319	std::vector<StdSize> count(2) ;
320	if (domain->isEmpty())
321	{
322	start[0]=0 ; start[1]=0 ;
323	count[0]=0 ; count[1]=0 ;
324	}
325	else
326	{
327	start[1]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
328	start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin;
329	count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ;
330	}
331
332	if (domain->hasLonLat)
333	{
334	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count);
335	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count);
336	}
337	break;
338	}
339	case CDomain::type_attr::rectilinear :
340	{
341	if (domain->hasLonLat)
342	{
343	std::vector<StdSize> start(1) ;
344	std::vector<StdSize> count(1) ;
345	if (domain->isEmpty())
346	{
347	start[0]=0 ;
348	count[0]=0 ;
349	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count);
350	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count);
351
352	}
353	else
354	{
355	start[0]=domain->zoom_jbegin_srv-domain->global_zoom_jbegin;
356	count[0]=domain->zoom_nj_srv ;
357	CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ;
358	SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count);
359
360	start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
361	count[0]=domain->zoom_ni_srv ;
362	CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ;
363	SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count);
364	}
365	}
366	break;
367	}
368	}
369
370	if (domain->hasBounds)
371	{
372	std::vector<StdSize> start(3);
373	std::vector<StdSize> count(3);
374	if (domain->isEmpty())
375	{
376	start[2] = start[1] = start[0] = 0;
377	count[2] = count[1] = count[0] = 0;
378	}
379	else
380	{
381	start[2] = 0;
382	start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin;
383	start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin;
384	count[2] = domain->nvertex;
385	count[1] = domain->zoom_ni_srv;
386	count[0] = domain->zoom_nj_srv;
387	}
388
389	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0, &start, &count);
390	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0, &start, &count);
391	}
392
393	if (domain->hasArea)
394	{
395	std::vector<StdSize> start(2);
396	std::vector<StdSize> count(2);
397
398	if (domain->isEmpty())
399	{
400	start[0] = 0; start[1] = 0;
401	count[0] = 0; count[1] = 0;
402	}
403	else
404	{
405	start[1] = domain->zoom_ibegin_srv - domain->global_zoom_ibegin;
406	start[0] = domain->zoom_jbegin_srv - domain->global_zoom_jbegin;
407	count[1] = domain->zoom_ni_srv;
408	count[0] = domain->zoom_nj_srv;
409	}
410
411	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count);
412	}
413
414	SuperClassWriter::definition_start();
415	break;
416	}
417	default :
418	ERROR("CNc4DataOutput::writeDomain(domain)",
419	<< "[ type = " << SuperClass::type << "]"
420	<< " not implemented yet !");
421	}
422	}
423	catch (CNetCdfException& e)
424	{
425	StdString msg("On writing the domain : ");
426	msg.append(domid); msg.append("\n");
427	msg.append("In the context : ");
428	msg.append(context->getId()); msg.append("\n");
429	msg.append(e.what());
430	ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg);
431	}
432
433	domain->addRelFile(this->filename);
434	}
435
436	//--------------------------------------------------------------
437
438	void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)
439	{
440	CContext* context = CContext::getCurrent() ;
441	CContextServer* server=context->server ;
442
443	if (domain->IsWritten(this->filename)) return;
444	domain->checkAttributes();
445	if (domain->isEmpty())
446	if (SuperClass::type==MULTI_FILE) return ;
447
448	std::vector<StdString> dim0;
449	StdString domid = domain->getDomainOutputName();
450	StdString domainName = domain->name;
451	domain->assignMesh(domainName);
452	domain->mesh->createMesh(domain->lonvalue_srv, domain->latvalue_srv, domain->bounds_lon_srv, domain->bounds_lat_srv);
453	//domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue_srv, domain->latvalue_srv, domain->bounds_lon_srv, domain->bounds_lat_srv);
454
455	StdString node_x = domainName + "_node_x";
456	StdString node_y = domainName + "_node_y";
457
458	StdString edge_x = domainName + "_edge_x";
459	StdString edge_y = domainName + "_edge_y";
460	StdString edge_nodes = domainName + "_edge_nodes";
461
462	StdString face_x = domainName + "_face_x";
463	StdString face_y = domainName + "_face_y";
464	StdString face_nodes = domainName + "_face_nodes";
465	StdString face_edges = domainName + "_face_edges";
466	StdString edge_faces = domainName + "_edge_face_links";
467	StdString face_faces = domainName + "_face_links";
468
469	StdString dimNode = "n" + domainName + "_node";
470	StdString dimEdge = "n" + domainName + "_edge";
471	StdString dimFace = "n" + domainName + "_face";
472	StdString dimVertex = "n" + domainName + "_vertex";
473	StdString dimTwo = "Two";
474
475	if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2);
476	if (!isWrittenDomain(domid))
477	{
478	dim0.clear();
479	SuperClassWriter::addVariable(domainName, NC_INT, dim0);
480	SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName);
481	SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName);
482	}
483
484	try
485	{
486	switch (SuperClass::type)
487	{
488	case (ONE_FILE) :
489	{
490	// Adding nodes
491	if (domain->nvertex == 1)
492	{
493	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
494	{
495	SuperClassWriter::addDimension(dimNode, domain->ni_glo);
496	dim0.clear();
497	dim0.push_back(dimNode);
498	SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0);
499	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
500	SuperClassWriter::addAttribute("longname_name", StdString("Longitude of mesh nodes."), &node_x);
501	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
502	SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0);
503	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
504	SuperClassWriter::addAttribute("longname_name", StdString("Latitude of mesh nodes."), &node_y);
505	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
506	}
507	} // domain->nvertex == 1
508
509	// Adding edges and nodes, if nodes have not been defined previously
510	if (domain->nvertex == 2)
511	{
512	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
513	{
514	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodes);
515	dim0.clear();
516	dim0.push_back(dimNode);
517	SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0);
518	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
519	SuperClassWriter::addAttribute("longname_name", StdString("Longitude of mesh nodes."), &node_x);
520	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
521	SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0);
522	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
523	SuperClassWriter::addAttribute("longname_name", StdString("Latitude of mesh nodes."), &node_y);
524	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
525	}
526	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
527	{
528	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
529	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
530	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdges);
531	dim0.clear();
532	dim0.push_back(dimEdge);
533	SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0);
534	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
535	SuperClassWriter::addAttribute("longname_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
536	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
537	SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0);
538	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
539	SuperClassWriter::addAttribute("longname_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
540	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
541	dim0.clear();
542	dim0.push_back(dimEdge);
543	dim0.push_back(dimTwo);
544	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
545	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
546	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
547	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
548	}
549	} // domain->nvertex == 2
550
551	// Adding faces, edges, and nodes, if edges and nodes have not been defined previously
552	if (domain->nvertex > 2)
553	{
554	// Nodes
555	if (!SuperClassWriter::varExist(node_x) \|\| !SuperClassWriter::varExist(node_y))
556	{
557	SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodes);
558	dim0.clear();
559	dim0.push_back(dimNode);
560	SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0);
561	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x);
562	SuperClassWriter::addAttribute("longname_name", StdString("Longitude of mesh nodes."), &node_x);
563	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x);
564	SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0);
565	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y);
566	SuperClassWriter::addAttribute("longname_name", StdString("Latitude of mesh nodes."), &node_y);
567	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y);
568	}
569	if (!SuperClassWriter::varExist(edge_x) \|\| !SuperClassWriter::varExist(edge_y))
570	{
571	SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName);
572	SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName);
573	SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdges);
574	dim0.clear();
575	dim0.push_back(dimEdge);
576	SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0);
577	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x);
578	SuperClassWriter::addAttribute("longname_name", StdString("Characteristic longitude of mesh edges."), &edge_x);
579	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x);
580	SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0);
581	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y);
582	SuperClassWriter::addAttribute("longname_name", StdString("Characteristic latitude of mesh edges."), &edge_y);
583	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y);
584	dim0.clear();
585	dim0.push_back(dimEdge);
586	dim0.push_back(dimTwo);
587	SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0);
588	SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes);
589	SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes);
590	SuperClassWriter::addAttribute("start_index", 0, &edge_nodes);
591	}
592	SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName);
593	SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName);
594	SuperClassWriter::addDimension(dimFace, domain->mesh->nbFaces);
595	SuperClassWriter::addDimension(dimVertex, domain->mesh->nvertex);
596	dim0.clear();
597	dim0.push_back(dimFace);
598	SuperClassWriter::addVariable(face_x, NC_FLOAT, dim0);
599	SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x);
600	SuperClassWriter::addAttribute("longname_name", StdString("Characteristic longitude of mesh faces."), &face_x);
601	SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x);
602	SuperClassWriter::addVariable(face_y, NC_FLOAT, dim0);
603	SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y);
604	SuperClassWriter::addAttribute("longname_name", StdString("Characteristic latitude of mesh faces."), &face_y);
605	SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y);
606	dim0.clear();
607	dim0.push_back(dimFace);
608	dim0.push_back(dimVertex);
609	SuperClassWriter::addVariable(face_nodes, NC_INT, dim0);
610	SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes);
611	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes);
612	SuperClassWriter::addAttribute("start_index", 0, &face_nodes);
613	dim0.clear();
614	dim0.push_back(dimFace);
615	dim0.push_back(dimVertex);
616	SuperClassWriter::addVariable(face_edges, NC_INT, dim0);
617	SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges);
618	SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges);
619	SuperClassWriter::addAttribute("start_index", 0, &face_edges);
620	dim0.clear();
621	dim0.push_back(dimEdge);
622	dim0.push_back(dimTwo);
623	SuperClassWriter::addVariable(edge_faces, NC_INT, dim0);
624	SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces);
625	SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces);
626	SuperClassWriter::addAttribute("start_index", 0, &edge_faces);
627	SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces);
628	SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces);
629	dim0.clear();
630	dim0.push_back(dimFace);
631	dim0.push_back(dimVertex);
632	SuperClassWriter::addVariable(face_faces, NC_INT, dim0);
633	SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces);
634	SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces);
635	SuperClassWriter::addAttribute("start_index", 0, &face_faces);
636	SuperClassWriter::addAttribute("flag_values", -1, &face_faces);
637	SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces);
638	} // domain->nvertex > 2
639
640	SuperClassWriter::definition_end();
641
642	std::vector<StdSize> start(1) ;
643	std::vector<StdSize> count(1) ;
644	if (domain->isEmpty())
645	{
646	start[0]=0 ;
647	count[0]=0 ;
648	}
649	else
650	{
651	start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
652	count[0]=domain->zoom_ni_srv ;
653	}
654
655	if (!isWrittenDomain(domid))
656	{
657	if (domain->nvertex == 1)
658	{
659	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &start, &count);
660	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &start, &count);
661	}
662	else if (domain->nvertex == 2)
663	{
664	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0);
665	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0);
666	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0);
667	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0);
668	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes);
669	}
670	else
671	{
672	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0);
673	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0);
674	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0);
675	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0);
676	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes);
677	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0);
678	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0);
679	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes);
680	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges);
681	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces);
682	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces);
683	}
684	setWrittenDomain(domid);
685	} // !isWrittenDomain
686	else
687	{
688	if (domain->nvertex == 1)
689	{
690	if ( (!domain->mesh->edgesAreWritten) && (!domain->mesh->facesAreWritten) )
691	{
692	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0);
693	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0);
694	}
695	}
696	if (domain->nvertex == 2)
697	{
698	if (!domain->mesh->facesAreWritten)
699	{
700	if (!domain->mesh->nodesAreWritten)
701	{
702	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0);
703	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0);
704	}
705	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0);
706	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0);
707	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes);
708	}
709	}
710	if (domain->nvertex > 2)
711	{
712	if (!domain->mesh->edgesAreWritten)
713	{
714	if (!domain->mesh->nodesAreWritten)
715	{
716	SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0);
717	SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0);
718	}
719	SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0);
720	SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0);
721	SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes);
722	}
723	SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0);
724	SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0);
725	SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes);
726	SuperClassWriter::writeData(domain->mesh->face_edges, face_edges);
727	SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces);
728	SuperClassWriter::writeData(domain->mesh->face_faces, face_faces);
729	}
730	}// isWrittenDomain
731
732	SuperClassWriter::definition_start();
733
734	break;
735	} // ONE_FILE
736
737	case (MULTI_FILE) :
738	{
739	break;
740	}
741
742	default :
743	ERROR("CNc4DataOutput::writeDomain(domain)",
744	<< "[ type = " << SuperClass::type << "]"
745	<< " not implemented yet !");
746	} // switch
747	} // try
748
749	catch (CNetCdfException& e)
750	{
751	StdString msg("On writing the domain : ");
752	msg.append(domid); msg.append("\n");
753	msg.append("In the context : ");
754	msg.append(context->getId()); msg.append("\n");
755	msg.append(e.what());
756	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
757	}
758
759	domain->addRelFile(this->filename);
760	}
761
762	//--------------------------------------------------------------
763
764	void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)
765	{
766	CContext* context = CContext::getCurrent() ;
767	CContextServer* server=context->server ;
768
769	if (domain->IsWritten(this->filename)) return;
770	domain->checkAttributes();
771
772	if (domain->isEmpty())
773	if (SuperClass::type==MULTI_FILE) return ;
774
775	std::vector<StdString> dim0, dim1;
776	StdString domid = domain->getDomainOutputName();
777	if (isWrittenDomain(domid)) return ;
778	else setWrittenDomain(domid);
779
780	StdString appendDomid = (singleDomain) ? "" : "_"+domid ;
781
782	StdString dimXid = StdString("cell").append(appendDomid);
783	StdString dimVertId = StdString("nvertex").append(appendDomid);
784
785	string lonid,latid,bounds_lonid,bounds_latid ;
786	string areaId = "area" + appendDomid;
787
788	try
789	{
790	switch (SuperClass::type)
791	{
792	case (MULTI_FILE) :
793	{
794	dim0.push_back(dimXid);
795	SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv);
796
797	lonid = StdString("lon").append(appendDomid);
798	latid = StdString("lat").append(appendDomid);
799	bounds_lonid = StdString("bounds_lon").append(appendDomid);
800	bounds_latid = StdString("bounds_lat").append(appendDomid);
801	if (domain->hasLonLat)
802	{
803	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
804	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
805	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
806	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
807	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
808	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
809	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
810	}
811	dim0.clear();
812	if (domain->hasBounds)
813	{
814	dim0.push_back(dimXid);
815	dim0.push_back(dimVertId);
816	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
817	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
818	}
819
820	dim0.clear();
821	dim0.push_back(dimXid);
822	if (domain->hasArea)
823	{
824	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
825	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
826	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
827	}
828
829	SuperClassWriter::definition_end();
830
831	if (domain->hasLonLat)
832	{
833	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0);
834	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0);
835	if (domain->hasBounds)
836	{
837	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0);
838	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0);
839	}
840	}
841
842	if (domain->hasArea)
843	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0);
844
845	SuperClassWriter::definition_start();
846	break ;
847	}
848
849	case (ONE_FILE) :
850	{
851	lonid = StdString("lon").append(appendDomid);
852	latid = StdString("lat").append(appendDomid);
853	bounds_lonid = StdString("bounds_lon").append(appendDomid);
854	bounds_latid = StdString("bounds_lat").append(appendDomid);
855	dim0.push_back(dimXid);
856	SuperClassWriter::addDimension(dimXid, domain->ni_glo);
857	if (domain->hasLonLat)
858	{
859	SuperClassWriter::addVariable(latid, NC_FLOAT, dim0);
860	SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0);
861
862	this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid);
863	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid);
864	this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid);
865	if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid);
866	if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex);
867	}
868	dim0.clear();
869
870	if (domain->hasBounds)
871	{
872	dim0.push_back(dimXid);
873	dim0.push_back(dimVertId);
874	SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0);
875	SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0);
876	}
877
878	if (domain->hasArea)
879	{
880	dim0.clear();
881	dim0.push_back(dimXid);
882	SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0);
883	SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId);
884	SuperClassWriter::addAttribute("units", StdString("m2"), &areaId);
885	}
886
887	SuperClassWriter::definition_end();
888
889	std::vector<StdSize> start(1), startBounds(2) ;
890	std::vector<StdSize> count(1), countBounds(2) ;
891	if (domain->isEmpty())
892	{
893	start[0]=0 ;
894	count[0]=0 ;
895	startBounds[1]=0 ;
896	countBounds[1]=domain->nvertex ;
897	startBounds[0]=0 ;
898	countBounds[0]=0 ;
899	}
900	else
901	{
902	start[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
903	count[0]=domain->zoom_ni_srv ;
904	startBounds[0]=domain->zoom_ibegin_srv-domain->global_zoom_ibegin;
905	startBounds[1]=0 ;
906	countBounds[0]=domain->zoom_ni_srv ;
907	countBounds[1]=domain->nvertex ;
908	}
909
910	if (domain->hasLonLat)
911	{
912	SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count);
913	SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count);
914	if (domain->hasBounds)
915	{
916	SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0,&startBounds,&countBounds);
917	SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0,&startBounds,&countBounds);
918	}
919	}
920
921	if (domain->hasArea)
922	SuperClassWriter::writeData(domain->area_srv, areaId, isCollective, 0, &start, &count);
923
924	SuperClassWriter::definition_start();
925
926	break;
927	}
928	default :
929	ERROR("CNc4DataOutput::writeDomain(domain)",
930	<< "[ type = " << SuperClass::type << "]"
931	<< " not implemented yet !");
932	}
933	}
934	catch (CNetCdfException& e)
935	{
936	StdString msg("On writing the domain : ");
937	msg.append(domid); msg.append("\n");
938	msg.append("In the context : ");
939	msg.append(context->getId()); msg.append("\n");
940	msg.append(e.what());
941	ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg);
942	}
943	domain->addRelFile(this->filename);
944	}
945	//--------------------------------------------------------------
946
947	void CNc4DataOutput::writeAxis_(CAxis* axis)
948	{
949	if (axis->IsWritten(this->filename)) return;
950	axis->checkAttributes();
951	int zoom_size_srv = axis->zoom_size_srv;
952	int zoom_begin_srv = axis->zoom_begin_srv;
953	int zoom_size = (MULTI_FILE == SuperClass::type) ? zoom_size_srv
954	: axis->global_zoom_n;
955	int zoom_begin = (MULTI_FILE == SuperClass::type) ? zoom_begin_srv
956	: axis->global_zoom_begin;
957
958	if ((0 == zoom_size_srv) && (MULTI_FILE == SuperClass::type)) return;
959
960	std::vector<StdString> dims;
961	StdString axisid = axis->getAxisOutputName();
962	if (isWrittenAxis(axisid)) return ;
963	else setWrittenAxis(axisid);
964
965	try
966	{
967	SuperClassWriter::addDimension(axisid, zoom_size);
968	if (axis->hasValue)
969	{
970	dims.push_back(axisid);
971	SuperClassWriter::addVariable(axisid, NC_FLOAT, dims);
972
973	if (!axis->name.isEmpty())
974	SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid);
975
976	if (!axis->standard_name.isEmpty())
977	SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid);
978
979	if (!axis->long_name.isEmpty())
980	SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid);
981
982	if (!axis->unit.isEmpty())
983	SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid);
984
985	if (!axis->positive.isEmpty())
986	{
987	SuperClassWriter::addAttribute("axis", string("Z"), &axisid);
988	SuperClassWriter::addAttribute("positive",
989	(axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"),
990	&axisid);
991	}
992
993	StdString axisBoundsId = axisid + "_bounds";
994	if (!axis->bounds.isEmpty())
995	{
996	dims.push_back("axis_nbounds");
997	SuperClassWriter::addVariable(axisBoundsId, NC_FLOAT, dims);
998	SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid);
999	}
1000
1001	SuperClassWriter::definition_end();
1002
1003	switch (SuperClass::type)
1004	{
1005	case MULTI_FILE:
1006	{
1007	CArray<double,1> axis_value(zoom_size_srv);
1008	for (int i = 0; i < zoom_size_srv; i++) axis_value(i) = axis->value_srv(i);
1009	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0);
1010
1011	if (!axis->bounds.isEmpty())
1012	SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0);
1013
1014	SuperClassWriter::definition_start();
1015
1016	break;
1017	}
1018	case ONE_FILE:
1019	{
1020	CArray<double,1> axis_value(zoom_size_srv);
1021	axis_value = axis->value_srv;
1022
1023	std::vector<StdSize> start(1), startBounds(2) ;
1024	std::vector<StdSize> count(1), countBounds(2) ;
1025	start[0] = startBounds[0] = zoom_begin_srv-axis->global_zoom_begin;
1026	count[0] = countBounds[0] = zoom_size_srv;
1027	startBounds[1] = 0;
1028	countBounds[1] = 2;
1029	SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count);
1030
1031	if (!axis->bounds.isEmpty())
1032	SuperClassWriter::writeData(axis->bound_srv, axisBoundsId, isCollective, 0, &startBounds, &countBounds);
1033
1034	SuperClassWriter::definition_start();
1035
1036	break;
1037	}
1038	default :
1039	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)",
1040	<< "[ type = " << SuperClass::type << "]"
1041	<< " not implemented yet !");
1042	}
1043	}
1044	}
1045	catch (CNetCdfException& e)
1046	{
1047	StdString msg("On writing the axis : ");
1048	msg.append(axisid); msg.append("\n");
1049	msg.append("In the context : ");
1050	CContext* context = CContext::getCurrent() ;
1051	msg.append(context->getId()); msg.append("\n");
1052	msg.append(e.what());
1053	ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg);
1054	}
1055	axis->addRelFile(this->filename);
1056	}
1057
1058	void CNc4DataOutput::writeScalar_(CScalar* scalar)
1059	{
1060	if (scalar->IsWritten(this->filename)) return;
1061	scalar->checkAttributes();
1062	int scalarSize = 1;
1063
1064	StdString scalaId = scalar->getScalarOutputName();
1065	if (isWrittenAxis(scalaId)) return ;
1066	else setWrittenAxis(scalaId);
1067
1068	try
1069	{
1070	if (!scalar->value.isEmpty())
1071	{
1072	// dims.push_back(scalaId);
1073	std::vector<StdString> dims;
1074	SuperClassWriter::addVariable(scalaId, NC_FLOAT, dims);
1075
1076	if (!scalar->name.isEmpty())
1077	SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId);
1078
1079	if (!scalar->standard_name.isEmpty())
1080	SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId);
1081
1082	if (!scalar->long_name.isEmpty())
1083	SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId);
1084
1085	if (!scalar->unit.isEmpty())
1086	SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId);
1087
1088	SuperClassWriter::definition_end();
1089
1090	switch (SuperClass::type)
1091	{
1092	case MULTI_FILE:
1093	{
1094	CArray<double,1> scalarValue(scalarSize);
1095	scalarValue(0) = scalar->value;
1096	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0);
1097	SuperClassWriter::definition_start();
1098
1099	break;
1100	}
1101	case ONE_FILE:
1102	{
1103	CArray<double,1> scalarValue(scalarSize);
1104	scalarValue(0) = scalar->value;
1105
1106	std::vector<StdSize> start(1);
1107	std::vector<StdSize> count(1);
1108	start[0] = 0;
1109	count[0] = 1;
1110	SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count);
1111	SuperClassWriter::definition_start();
1112
1113	break;
1114	}
1115	default :
1116	ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)",
1117	<< "[ type = " << SuperClass::type << "]"
1118	<< " not implemented yet !");
1119	}
1120	}
1121	}
1122	catch (CNetCdfException& e)
1123	{
1124	StdString msg("On writing the scalar : ");
1125	msg.append(scalaId); msg.append("\n");
1126	msg.append("In the context : ");
1127	CContext* context = CContext::getCurrent() ;
1128	msg.append(context->getId()); msg.append("\n");
1129	msg.append(e.what());
1130	ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg);
1131	}
1132	scalar->addRelFile(this->filename);
1133	}
1134
1135	//--------------------------------------------------------------
1136
1137	void CNc4DataOutput::writeGridCompressed_(CGrid* grid)
1138	{
1139	if (grid->isScalarGrid() \|\| grid->isWrittenCompressed(this->filename)) return;
1140
1141	try
1142	{
1143	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1144	std::vector<StdString> domainList = grid->getDomainList();
1145	std::vector<StdString> axisList = grid->getAxisList();
1146	std::vector<StdString> scalarList = grid->getScalarList();
1147	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1148
1149	std::vector<StdString> dims;
1150
1151	if (grid->isCompressible())
1152	{
1153	StdString varId = grid->getId() + "_points";
1154
1155	int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes();
1156	SuperClassWriter::addDimension(varId, nbIndexes);
1157
1158	dims.push_back(varId);
1159	SuperClassWriter::addVariable(varId, NC_INT, dims);
1160
1161	StdOStringStream compress;
1162	for (int i = numElement - 1; i >= 0; --i)
1163	{
1164	if (2 == axisDomainOrder(i))
1165	{
1166	CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]);
1167	StdString domId = domain->getDomainOutputName();
1168	StdString appendDomId = singleDomain ? "" : "_" + domId;
1169
1170	switch (domain->type)
1171	{
1172	case CDomain::type_attr::curvilinear:
1173	compress << "y" << appendDomId << " x" << appendDomId;
1174	break;
1175	case CDomain::type_attr::rectilinear:
1176	compress << "lat" << appendDomId << " lon" << appendDomId;
1177	break;
1178	case CDomain::type_attr::unstructured:
1179	compress << "cell" << appendDomId;
1180	break;
1181	}
1182	++idxDomain;
1183	}
1184	else if (1 == axisDomainOrder(i))
1185	{
1186	CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]);
1187	compress << axis->getAxisOutputName();
1188	++idxAxis;
1189	}
1190	else
1191	{
1192	CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]);
1193	compress << scalar->getScalarOutputName();
1194	++idxScalar;
1195	}
1196
1197	if (i != 0) compress << ' ';
1198	}
1199	SuperClassWriter::addAttribute("compress", compress.str(), &varId);
1200
1201	grid->computeCompressedIndex();
1202
1203	CArray<int, 1> indexes(grid->getNumberWrittenIndexes());
1204	std::map<int, CArray<size_t, 1> >::const_iterator it;
1205	for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it)
1206	{
1207	const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first];
1208	for (int i = 0; i < it->second.numElements(); i++)
1209	indexes(compressedIndexes(i)) = it->second(i);
1210	}
1211
1212	switch (SuperClass::type)
1213	{
1214	case (MULTI_FILE):
1215	{
1216	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1217	break;
1218	}
1219	case (ONE_FILE):
1220	{
1221	if (grid->doGridHaveDataDistributed())
1222	grid->getDistributionServer()->computeGlobalIndex(indexes);
1223
1224	std::vector<StdSize> start, count;
1225	start.push_back(grid->getOffsetWrittenIndexes());
1226	count.push_back(grid->getNumberWrittenIndexes());
1227
1228	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1229	break;
1230	}
1231	}
1232	}
1233	else
1234	{
1235	for (int i = 0; i < numElement; ++i)
1236	{
1237	StdString varId, compress;
1238	CArray<int, 1> indexes;
1239	bool isDistributed;
1240	StdSize nbIndexes, totalNbIndexes, offset;
1241	int firstGlobalIndex;
1242
1243	if (2 == axisDomainOrder(i))
1244	{
1245	CDomain* domain = CDomain::get(domainList[idxDomain]);
1246	StdString domId = domain->getDomainOutputName();
1247
1248	if (!domain->isCompressible()
1249	\|\| domain->type == CDomain::type_attr::unstructured
1250	\|\| domain->isWrittenCompressed(this->filename)
1251	\|\| isWrittenCompressedDomain(domId))
1252	continue;
1253
1254	StdString appendDomId = singleDomain ? "" : "_" + domId;
1255
1256	varId = domId + "_points";
1257	switch (domain->type)
1258	{
1259	case CDomain::type_attr::curvilinear:
1260	compress = "y" + appendDomId + " x" + appendDomId;
1261	break;
1262	case CDomain::type_attr::rectilinear:
1263	compress = "lat" + appendDomId + " lon" + appendDomId;
1264	break;
1265	}
1266
1267	const std::vector<int>& indexesToWrite = domain->getIndexesToWrite();
1268	indexes.resize(indexesToWrite.size());
1269	for (int n = 0; n < indexes.numElements(); ++n)
1270	indexes(n) = indexesToWrite[n];
1271
1272	isDistributed = domain->isDistributed();
1273	nbIndexes = domain->getNumberWrittenIndexes();
1274	totalNbIndexes = domain->getTotalNumberWrittenIndexes();
1275	offset = domain->getOffsetWrittenIndexes();
1276	firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo;
1277
1278	domain->addRelFileCompressed(this->filename);
1279	setWrittenCompressedDomain(domId);
1280	++idxDomain;
1281	}
1282	else if (1 == axisDomainOrder(i))
1283	{
1284	CAxis* axis = CAxis::get(axisList[idxAxis]);
1285	StdString axisId = axis->getAxisOutputName();
1286
1287	if (!axis->isCompressible()
1288	\|\| axis->isWrittenCompressed(this->filename)
1289	\|\| isWrittenCompressedAxis(axisId))
1290	continue;
1291
1292	varId = axisId + "_points";
1293	compress = axisId;
1294
1295	const std::vector<int>& indexesToWrite = axis->getIndexesToWrite();
1296	indexes.resize(indexesToWrite.size());
1297	for (int n = 0; n < indexes.numElements(); ++n)
1298	indexes(n) = indexesToWrite[n];
1299
1300	isDistributed = axis->isDistributed();
1301	nbIndexes = axis->getNumberWrittenIndexes();
1302	totalNbIndexes = axis->getTotalNumberWrittenIndexes();
1303	offset = axis->getOffsetWrittenIndexes();
1304	firstGlobalIndex = axis->begin;
1305
1306	axis->addRelFileCompressed(this->filename);
1307	setWrittenCompressedAxis(axisId);
1308	++idxAxis;
1309	}
1310	else
1311	{
1312	}
1313
1314	if (!varId.empty())
1315	{
1316	SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes);
1317
1318	dims.clear();
1319	dims.push_back(varId);
1320	SuperClassWriter::addVariable(varId, NC_INT, dims);
1321
1322	SuperClassWriter::addAttribute("compress", compress, &varId);
1323
1324	switch (SuperClass::type)
1325	{
1326	case (MULTI_FILE):
1327	{
1328	indexes -= firstGlobalIndex;
1329	SuperClassWriter::writeData(indexes, varId, isCollective, 0);
1330	break;
1331	}
1332	case (ONE_FILE):
1333	{
1334	std::vector<StdSize> start, count;
1335	start.push_back(offset);
1336	count.push_back(nbIndexes);
1337
1338	SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count);
1339	break;
1340	}
1341	}
1342	}
1343	}
1344
1345	if (!dims.empty())
1346	grid->computeCompressedIndex();
1347	}
1348
1349	grid->addRelFileCompressed(this->filename);
1350	}
1351	catch (CNetCdfException& e)
1352	{
1353	StdString msg("On writing compressed grid : ");
1354	msg.append(grid->getId()); msg.append("\n");
1355	msg.append("In the context : ");
1356	CContext* context = CContext::getCurrent();
1357	msg.append(context->getId()); msg.append("\n");
1358	msg.append(e.what());
1359	ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg);
1360	}
1361	}
1362
1363	//--------------------------------------------------------------
1364
1365	void CNc4DataOutput::writeTimeDimension_(void)
1366	{
1367	try
1368	{
1369	SuperClassWriter::addDimension(getTimeCounterName());
1370	}
1371	catch (CNetCdfException& e)
1372	{
1373	StdString msg("On writing time dimension : time_couter\n");
1374	msg.append("In the context : ");
1375	CContext* context = CContext::getCurrent() ;
1376	msg.append(context->getId()); msg.append("\n");
1377	msg.append(e.what());
1378	ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg);
1379	}
1380	}
1381
1382	//--------------------------------------------------------------
1383
1384	void CNc4DataOutput::writeField_(CField* field)
1385	{
1386	CContext* context = CContext::getCurrent() ;
1387	CContextServer* server=context->server ;
1388
1389	std::vector<StdString> dims, coodinates;
1390	CGrid* grid = field->grid;
1391	if (!grid->doGridHaveDataToWrite())
1392	if (SuperClass::type==MULTI_FILE) return ;
1393
1394	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1395	int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0;
1396	std::vector<StdString> domainList = grid->getDomainList();
1397	std::vector<StdString> axisList = grid->getAxisList();
1398	std::vector<StdString> scalarList = grid->getScalarList();
1399
1400	StdString timeid = getTimeCounterName();
1401	StdString dimXid,dimYid;
1402	std::deque<StdString> dimIdList, dimCoordList;
1403	bool hasArea = false;
1404	StdString cellMeasures = "area:";
1405	bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output;
1406
1407	for (int i = 0; i < numElement; ++i)
1408	{
1409	if (2 == axisDomainOrder(i))
1410	{
1411	CDomain* domain = CDomain::get(domainList[idxDomain]);
1412	StdString domId = domain->getDomainOutputName();
1413	StdString appendDomId = singleDomain ? "" : "_" + domId ;
1414
1415	if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured)
1416	{
1417	dimIdList.push_back(domId + "_points");
1418	field->setUseCompressedOutput();
1419	}
1420
1421	switch (domain->type)
1422	{
1423	case CDomain::type_attr::curvilinear:
1424	if (!compressedOutput \|\| !domain->isCompressible())
1425	{
1426	dimXid = StdString("x").append(appendDomId);
1427	dimIdList.push_back(dimXid);
1428	dimYid = StdString("y").append(appendDomId);
1429	dimIdList.push_back(dimYid);
1430	}
1431	dimCoordList.push_back(StdString("nav_lon").append(appendDomId));
1432	dimCoordList.push_back(StdString("nav_lat").append(appendDomId));
1433	break ;
1434	case CDomain::type_attr::rectilinear:
1435	if (!compressedOutput \|\| !domain->isCompressible())
1436	{
1437	dimXid = StdString("lon").append(appendDomId);
1438	dimIdList.push_back(dimXid);
1439	dimYid = StdString("lat").append(appendDomId);
1440	dimIdList.push_back(dimYid);
1441	}
1442	break ;
1443	case CDomain::type_attr::unstructured:
1444	{
1445	if (SuperClassWriter::useCFConvention)
1446	{
1447	dimXid = StdString("cell").append(appendDomId);
1448	dimIdList.push_back(dimXid);
1449	dimCoordList.push_back(StdString("lon").append(appendDomId));
1450	dimCoordList.push_back(StdString("lat").append(appendDomId));
1451	}
1452	else
1453	{
1454	StdString domainName = domain->name;
1455	if (domain->nvertex == 1)
1456	{
1457	dimXid = "n" + domainName + "_node";
1458	dimIdList.push_back(dimXid);
1459	dimCoordList.push_back(StdString(domainName + "_node_x"));
1460	dimCoordList.push_back(StdString(domainName + "_node_y"));
1461	}
1462	else if (domain->nvertex == 2)
1463	{
1464	dimXid = "n" + domainName + "_edge";
1465	dimIdList.push_back(dimXid);
1466	dimCoordList.push_back(StdString(domainName + "_edge_x"));
1467	dimCoordList.push_back(StdString(domainName + "_edge_y"));
1468	}
1469	else
1470	{
1471	dimXid = "n" + domainName + "_face";
1472	dimIdList.push_back(dimXid);
1473	dimCoordList.push_back(StdString(domainName + "_face_x"));
1474	dimCoordList.push_back(StdString(domainName + "_face_y"));
1475	}
1476	} // ugrid convention
1477	} // case unstructured domain
1478	}
1479
1480	if (domain->hasArea)
1481	{
1482	hasArea = true;
1483	cellMeasures += " area" + appendDomId;
1484	}
1485	++idxDomain;
1486	}
1487	else if (1 == axisDomainOrder(i))
1488	{
1489	CAxis* axis = CAxis::get(axisList[idxAxis]);
1490	StdString axisId = axis->getAxisOutputName();
1491
1492	if (compressedOutput && axis->isCompressible())
1493	{
1494	dimIdList.push_back(axisId + "_points");
1495	field->setUseCompressedOutput();
1496	}
1497	else
1498	dimIdList.push_back(axisId);
1499
1500	dimCoordList.push_back(axisId);
1501	++idxAxis;
1502	}
1503	else // scalar
1504	{
1505	/* Do nothing here */
1506	}
1507	}
1508
1509	/*
1510	StdString lonid_loc = (server->intraCommSize > 1)
1511	? StdString("lon").append(appendDomid).append("_local")
1512	: lonid;
1513	StdString latid_loc = (server->intraCommSize > 1)
1514	? StdString("lat").append(appendDomid).append("_local")
1515	: latid;
1516	*/
1517	StdString fieldid = field->getFieldOutputName();
1518
1519	nc_type type ;
1520	if (field->prec.isEmpty()) type = NC_FLOAT ;
1521	else
1522	{
1523	if (field->prec==2) type = NC_SHORT ;
1524	else if (field->prec==4) type = NC_FLOAT ;
1525	else if (field->prec==8) type = NC_DOUBLE ;
1526	}
1527
1528	bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once);
1529
1530	if (wtime)
1531	{
1532
1533	//StdOStringStream oss;
1534	// oss << "time_" << field->operation.getValue()
1535	// << "_" << field->getRelFile()->output_freq.getValue();
1536	//oss
1537	if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant"));
1538	else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered"));
1539	dims.push_back(timeid);
1540	}
1541
1542	if (compressedOutput && grid->isCompressible())
1543	{
1544	dims.push_back(grid->getId() + "_points");
1545	field->setUseCompressedOutput();
1546	}
1547	else
1548	{
1549	while (!dimIdList.empty())
1550	{
1551	dims.push_back(dimIdList.back());
1552	dimIdList.pop_back();
1553	}
1554	}
1555
1556	while (!dimCoordList.empty())
1557	{
1558	coodinates.push_back(dimCoordList.back());
1559	dimCoordList.pop_back();
1560	}
1561
1562	try
1563	{
1564	SuperClassWriter::addVariable(fieldid, type, dims);
1565
1566	if (!field->standard_name.isEmpty())
1567	SuperClassWriter::addAttribute
1568	("standard_name", field->standard_name.getValue(), &fieldid);
1569
1570	if (!field->long_name.isEmpty())
1571	SuperClassWriter::addAttribute
1572	("long_name", field->long_name.getValue(), &fieldid);
1573
1574	if (!field->unit.isEmpty())
1575	SuperClassWriter::addAttribute
1576	("units", field->unit.getValue(), &fieldid);
1577
1578	if (!field->valid_min.isEmpty())
1579	SuperClassWriter::addAttribute
1580	("valid_min", field->valid_min.getValue(), &fieldid);
1581
1582	if (!field->valid_max.isEmpty())
1583	SuperClassWriter::addAttribute
1584	("valid_max", field->valid_max.getValue(), &fieldid);
1585
1586	if (!field->scale_factor.isEmpty())
1587	SuperClassWriter::addAttribute
1588	("scale_factor", field->scale_factor.getValue(), &fieldid);
1589
1590	if (!field->add_offset.isEmpty())
1591	SuperClassWriter::addAttribute
1592	("add_offset", field->add_offset.getValue(), &fieldid);
1593
1594	SuperClassWriter::addAttribute
1595	("online_operation", field->operation.getValue(), &fieldid);
1596
1597	// write child variables as attributes
1598
1599
1600	vector<CVariable*> listVars = field->getAllVariables() ;
1601	for (vector<CVariable>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(it, fieldid) ;
1602
1603
1604	if (wtime)
1605	{
1606	CDuration freqOp = field->freq_op.getValue();
1607	freqOp.solveTimeStep(*context->calendar);
1608	StdString freqOpStr = freqOp.toStringUDUnits();
1609	SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid);
1610
1611	CDuration freqOut = field->getRelFile()->output_freq.getValue();
1612	freqOut.solveTimeStep(*context->calendar);
1613	SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid);
1614
1615	StdString cellMethods = "time: ";
1616	if (field->operation.getValue() == "instant") cellMethods += "point";
1617	else if (field->operation.getValue() == "average") cellMethods += "mean";
1618	else if (field->operation.getValue() == "accumulate") cellMethods += "sum";
1619	else cellMethods += field->operation;
1620	if (freqOp.resolve(context->calendar) != freqOut.resolve(context->calendar))
1621	cellMethods += " (interval: " + freqOpStr + ")";
1622	SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid);
1623	}
1624
1625	if (hasArea)
1626	SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid);
1627
1628	if (!field->default_value.isEmpty())
1629	{
1630	double default_value = field->default_value.getValue();
1631	float fdefault_value = (float)default_value;
1632	if (type == NC_DOUBLE)
1633	SuperClassWriter::setDefaultValue(fieldid, &default_value);
1634	else
1635	SuperClassWriter::setDefaultValue(fieldid, &fdefault_value);
1636	}
1637	else
1638	SuperClassWriter::setDefaultValue(fieldid, (double*)NULL);
1639
1640	if (field->compression_level.isEmpty())
1641	field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level;
1642	SuperClassWriter::setCompressionLevel(fieldid, field->compression_level);
1643
1644	{ // Ecriture des coordonnes
1645
1646	StdString coordstr; //boost::algorithm::join(coodinates, " ")
1647	std::vector<StdString>::iterator
1648	itc = coodinates.begin(), endc = coodinates.end();
1649
1650	for (; itc!= endc; itc++)
1651	{
1652	StdString & coord = *itc;
1653	if (itc+1 != endc)
1654	coordstr.append(coord).append(" ");
1655	else coordstr.append(coord);
1656	}
1657
1658	SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid);
1659
1660	}
1661	}
1662	catch (CNetCdfException& e)
1663	{
1664	StdString msg("On writing field : ");
1665	msg.append(fieldid); msg.append("\n");
1666	msg.append("In the context : ");
1667	msg.append(context->getId()); msg.append("\n");
1668	msg.append(e.what());
1669	ERROR("CNc4DataOutput::writeField_(CField* field)", << msg);
1670	}
1671	} // writeField_()
1672
1673	//--------------------------------------------------------------
1674
1675	void CNc4DataOutput::writeFile_ (CFile* file)
1676	{
1677	StdString filename = file->getFileOutputName();
1678	StdString description = (!file->description.isEmpty())
1679	? file->description.getValue()
1680	: StdString("Created by xios");
1681
1682	singleDomain = (file->nbDomains == 1);
1683
1684	try
1685	{
1686	if (SuperClassWriter::useCFConvention)
1687	this->writeFileAttributes(filename, description,
1688	StdString("CF-1.5"),
1689	StdString("An IPSL model"),
1690	this->getTimeStamp());
1691	else
1692	this->writeFileAttributes(filename, description,
1693	StdString("UGRID"),
1694	StdString("An IPSL model"),
1695	this->getTimeStamp());
1696
1697
1698	if (!appendMode)
1699	SuperClassWriter::addDimension("axis_nbounds", 2);
1700	}
1701	catch (CNetCdfException& e)
1702	{
1703	StdString msg("On writing file : ");
1704	msg.append(filename); msg.append("\n");
1705	msg.append("In the context : ");
1706	CContext* context = CContext::getCurrent() ;
1707	msg.append(context->getId()); msg.append("\n");
1708	msg.append(e.what());
1709	ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg);
1710	}
1711	}
1712
1713	void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)
1714	{
1715	StdString name = var->getVariableOutputName();
1716
1717	try
1718	{
1719	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
1720	addAttribute(name, var->getData<int>(), &fieldId);
1721	else if (var->type.getValue() == CVariable::type_attr::t_int16)
1722	addAttribute(name, var->getData<short int>(), &fieldId);
1723	else if (var->type.getValue() == CVariable::type_attr::t_float)
1724	addAttribute(name, var->getData<float>(), &fieldId);
1725	else if (var->type.getValue() == CVariable::type_attr::t_double)
1726	addAttribute(name, var->getData<double>(), &fieldId);
1727	else if (var->type.getValue() == CVariable::type_attr::t_string)
1728	addAttribute(name, var->getData<string>(), &fieldId);
1729	else
1730	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)",
1731	<< "Unsupported variable of type " << var->type.getStringValue());
1732	}
1733	catch (CNetCdfException& e)
1734	{
1735	StdString msg("On writing attributes of variable with name : ");
1736	msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n");
1737	msg.append("In the context : ");
1738	CContext* context = CContext::getCurrent() ;
1739	msg.append(context->getId()); msg.append("\n");
1740	msg.append(e.what());
1741	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg);
1742	}
1743	}
1744
1745	void CNc4DataOutput::writeAttribute_ (CVariable* var)
1746	{
1747	StdString name = var->getVariableOutputName();
1748
1749	try
1750	{
1751	if (var->type.getValue() == CVariable::type_attr::t_int \|\| var->type.getValue() == CVariable::type_attr::t_int32)
1752	addAttribute(name, var->getData<int>());
1753	else if (var->type.getValue() == CVariable::type_attr::t_int16)
1754	addAttribute(name, var->getData<short int>());
1755	else if (var->type.getValue() == CVariable::type_attr::t_float)
1756	addAttribute(name, var->getData<float>());
1757	else if (var->type.getValue() == CVariable::type_attr::t_double)
1758	addAttribute(name, var->getData<double>());
1759	else if (var->type.getValue() == CVariable::type_attr::t_string)
1760	addAttribute(name, var->getData<string>());
1761	else
1762	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)",
1763	<< "Unsupported variable of type " << var->type.getStringValue());
1764	}
1765	catch (CNetCdfException& e)
1766	{
1767	StdString msg("On writing attributes of variable with name : ");
1768	msg.append(name); msg.append("\n");
1769	msg.append("In the context : ");
1770	CContext* context = CContext::getCurrent() ;
1771	msg.append(context->getId()); msg.append("\n");
1772	msg.append(e.what());
1773	ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg);
1774	}
1775	}
1776
1777	void CNc4DataOutput::syncFile_ (void)
1778	{
1779	try
1780	{
1781	SuperClassWriter::sync() ;
1782	}
1783	catch (CNetCdfException& e)
1784	{
1785	StdString msg("On synchronizing the write among processes");
1786	msg.append("In the context : ");
1787	CContext* context = CContext::getCurrent() ;
1788	msg.append(context->getId()); msg.append("\n");
1789	msg.append(e.what());
1790	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
1791	}
1792	}
1793
1794	void CNc4DataOutput::closeFile_ (void)
1795	{
1796	try
1797	{
1798	SuperClassWriter::close() ;
1799	}
1800	catch (CNetCdfException& e)
1801	{
1802	StdString msg("On closing file");
1803	msg.append("In the context : ");
1804	CContext* context = CContext::getCurrent() ;
1805	msg.append(context->getId()); msg.append("\n");
1806	msg.append(e.what());
1807	ERROR("CNc4DataOutput::syncFile_ (void)", << msg);
1808	}
1809
1810	}
1811
1812	//---------------------------------------------------------------
1813
1814	StdString CNc4DataOutput::getTimeStamp(void) const
1815	{
1816	const int buffer_size = 100;
1817	time_t rawtime;
1818	struct tm * timeinfo = NULL;
1819	char buffer [buffer_size];
1820
1821	time ( &rawtime );
1822	timeinfo = localtime ( &rawtime );
1823	strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo);
1824
1825	return (StdString(buffer));
1826	}
1827
1828	//---------------------------------------------------------------
1829
1830	void CNc4DataOutput::writeFieldData_ (CField* field)
1831	{
1832	CContext* context = CContext::getCurrent();
1833	CContextServer* server = context->server;
1834	CGrid* grid = field->grid;
1835
1836	if (!grid->doGridHaveDataToWrite())
1837	if (SuperClass::type == MULTI_FILE \|\| !isCollective) return;
1838
1839	StdString fieldid = field->getFieldOutputName();
1840
1841	StdOStringStream oss;
1842	string timeAxisId;
1843	if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId = "time_instant";
1844	else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId = "time_centered";
1845
1846	StdString timeBoundId = getTimeCounterName() + "_bounds";
1847
1848	StdString timeAxisBoundId;
1849	if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId = "time_instant_bounds";
1850	else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId = "time_centered_bounds";
1851
1852	if (!field->wasWritten())
1853	{
1854	if (appendMode && field->file->record_offset.isEmpty())
1855	{
1856	field->resetNStep(getRecordFromTime(field->last_Write_srv) + 1);
1857	}
1858
1859	field->setWritten();
1860	}
1861
1862
1863	CArray<double,1> time_data(1);
1864	CArray<double,1> time_data_bound(2);
1865	CArray<double,1> time_counter(1);
1866	CArray<double,1> time_counter_bound(2);
1867
1868	bool wtime = (field->getOperationTimeType() != func::CFunctor::once);
1869
1870	if (wtime)
1871	{
1872	Time lastWrite = field->last_Write_srv;
1873	Time lastLastWrite = field->lastlast_Write_srv;
1874
1875	if (field->getOperationTimeType() == func::CFunctor::instant)
1876	time_data(0) = lastWrite;
1877	else if (field->getOperationTimeType() == func::CFunctor::centered)
1878	time_data(0) = (lastWrite + lastLastWrite) / 2;
1879
1880	if (field->getOperationTimeType() == func::CFunctor::instant)
1881	time_data_bound(0) = time_data_bound(1) = lastWrite;
1882	else if (field->getOperationTimeType() == func::CFunctor::centered)
1883	{
1884	time_data_bound(0) = lastLastWrite;
1885	time_data_bound(1) = lastWrite;
1886	}
1887
1888	if (field->file->time_counter == CFile::time_counter_attr::instant)
1889	time_counter(0) = lastWrite;
1890	else if (field->file->time_counter == CFile::time_counter_attr::centered)
1891	time_counter(0) = (lastWrite + lastLastWrite) / 2;
1892	else if (field->file->time_counter == CFile::time_counter_attr::record)
1893	time_counter(0) = field->getNStep() - 1;
1894
1895
1896	if (field->file->time_counter == CFile::time_counter_attr::instant)
1897	time_counter_bound(0) = time_counter_bound(1) = lastWrite;
1898	else if (field->file->time_counter == CFile::time_counter_attr::centered)
1899	{
1900	time_counter_bound(0) = lastLastWrite;
1901	time_counter_bound(1) = lastWrite;
1902	}
1903	else if (field->file->time_counter == CFile::time_counter_attr::record)
1904	time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1;
1905	}
1906
1907	bool isRoot = (server->intraCommRank == 0);
1908
1909	if (!field->scale_factor.isEmpty() \|\| !field->add_offset.isEmpty())
1910	{
1911	double scaleFactor = 1.0;
1912	double addOffset = 0.0;
1913	if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor;
1914	if (!field->add_offset.isEmpty()) addOffset = field->add_offset;
1915	field->scaleFactorAddOffset(scaleFactor, addOffset);
1916	}
1917
1918	try
1919	{
1920	size_t writtenSize;
1921	if (field->getUseCompressedOutput())
1922	writtenSize = grid->getNumberWrittenIndexes();
1923	else
1924	writtenSize = grid->getWrittenDataSize();
1925
1926	CArray<double,1> fieldData(writtenSize);
1927	if (!field->default_value.isEmpty()) fieldData = field->default_value;
1928
1929	if (field->getUseCompressedOutput())
1930	field->outputCompressedField(fieldData);
1931	else
1932	field->outputField(fieldData);
1933
1934	if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData);
1935
1936	switch (SuperClass::type)
1937	{
1938	case (MULTI_FILE) :
1939	{
1940	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1);
1941	if (wtime)
1942	{
1943	SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1);
1944	SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1);
1945	if (field->file->time_counter != CFile::time_counter_attr::none)
1946	{
1947	SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1);
1948	if (field->file->time_counter != CFile::time_counter_attr::record)
1949	SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1);
1950	}
1951	}
1952	break;
1953	}
1954	case (ONE_FILE) :
1955	{
1956	const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal();
1957	const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer();
1958	const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer();
1959
1960	std::vector<StdSize> start, count;
1961
1962	if (field->getUseCompressedOutput())
1963	{
1964	if (grid->isCompressible())
1965	{
1966	start.push_back(grid->getOffsetWrittenIndexes());
1967	count.push_back(grid->getNumberWrittenIndexes());
1968	}
1969	else
1970	{
1971	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
1972	std::vector<StdString> domainList = grid->getDomainList();
1973	std::vector<StdString> axisList = grid->getAxisList();
1974	int numElement = axisDomainOrder.numElements();
1975	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
1976	int idx = nZoomBeginGlobal.size() - 1;
1977
1978	start.reserve(nZoomBeginGlobal.size());
1979	count.reserve(nZoomBeginGlobal.size());
1980
1981
1982	for (int i = numElement - 1; i >= 0; --i)
1983	{
1984	if (2 == axisDomainOrder(i))
1985	{
1986	CDomain* domain = CDomain::get(domainList[idxDomain]);
1987
1988	if (domain->isCompressible())
1989	{
1990	start.push_back(domain->getOffsetWrittenIndexes());
1991	count.push_back(domain->getNumberWrittenIndexes());
1992	idx -= 2;
1993	}
1994	else
1995	{
1996	if ((domain->type) != CDomain::type_attr::unstructured)
1997	{
1998	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
1999	count.push_back(nZoomSizeServer[idx]);
2000	}
2001	--idx;
2002	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2003	count.push_back(nZoomSizeServer[idx]);
2004	--idx;
2005	}
2006	--idxDomain;
2007	}
2008	else if (1 == axisDomainOrder(i))
2009	{
2010	CAxis* axis = CAxis::get(axisList[idxAxis]);
2011
2012	if (axis->isCompressible())
2013	{
2014	start.push_back(axis->getOffsetWrittenIndexes());
2015	count.push_back(axis->getNumberWrittenIndexes());
2016	}
2017	else
2018	{
2019	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2020	count.push_back(nZoomSizeServer[idx]);
2021	}
2022
2023	--idxAxis;
2024	--idx;
2025	}
2026	}
2027	}
2028	}
2029	else
2030	{
2031
2032	CArray<int,1> axisDomainOrder = grid->axis_domain_order;
2033	std::vector<StdString> domainList = grid->getDomainList();
2034	std::vector<StdString> axisList = grid->getAxisList();
2035	int numElement = axisDomainOrder.numElements();
2036	int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1;
2037	int idx = nZoomBeginGlobal.size() - 1;
2038
2039	start.reserve(nZoomBeginGlobal.size());
2040	count.reserve(nZoomBeginGlobal.size());
2041
2042	for (int i = numElement - 1; i >= 0; --i)
2043	{
2044	if (2 == axisDomainOrder(i))
2045	{
2046	CDomain* domain = CDomain::get(domainList[idxDomain]);
2047	if ((domain->type) != CDomain::type_attr::unstructured)
2048	{
2049	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2050	count.push_back(nZoomSizeServer[idx]);
2051	}
2052	--idx ;
2053	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2054	count.push_back(nZoomSizeServer[idx]);
2055	--idx ;
2056	--idxDomain;
2057	}
2058	else if (1 == axisDomainOrder(i))
2059	{
2060	start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]);
2061	count.push_back(nZoomSizeServer[idx]);
2062	--idx;
2063	}
2064	else
2065	{
2066	if (1 == axisDomainOrder.numElements())
2067	{
2068	start.push_back(0);
2069	count.push_back(1);
2070	}
2071	--idx;
2072	}
2073	}
2074	}
2075
2076	SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count);
2077	if (wtime)
2078	{
2079	SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot);
2080	SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot);
2081	if (field->file->time_counter != CFile::time_counter_attr::none)
2082	{
2083	SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1, isRoot);
2084	if (field->file->time_counter != CFile::time_counter_attr::record)
2085	SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot);
2086	}
2087	}
2088
2089	break;
2090	}
2091	}
2092	}
2093	catch (CNetCdfException& e)
2094	{
2095	StdString msg("On writing field data: ");
2096	msg.append(fieldid); msg.append("\n");
2097	msg.append("In the context : ");
2098	msg.append(context->getId()); msg.append("\n");
2099	msg.append(e.what());
2100	ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg);
2101	}
2102	}
2103
2104	//---------------------------------------------------------------
2105
2106	void CNc4DataOutput::writeTimeAxis_
2107	(CField* field,
2108	const boost::shared_ptr<CCalendar> cal)
2109	{
2110	StdOStringStream oss;
2111
2112	if (field->getOperationTimeType() == func::CFunctor::once) return ;
2113
2114	// oss << "time_" << field->operation.getValue()
2115	// << "_" << field->getRelFile()->output_freq.getValue();
2116
2117	// StdString axisid = oss.str();
2118	// if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ;
2119	// else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ;
2120
2121	StdString axisid("time_centered") ;
2122	StdString axisBoundId("time_centered_bounds");
2123	StdString timeid(getTimeCounterName());
2124	StdString timeBoundId("axis_nbounds");
2125
2126	if (field->getOperationTimeType() == func::CFunctor::instant)
2127	{
2128	axisid = "time_instant";
2129	axisBoundId = "time_instant_bounds";
2130	}
2131
2132	try
2133	{
2134	// Adding time_instant or time_centered
2135	std::vector<StdString> dims;
2136	dims.push_back(timeid);
2137	if (!SuperClassWriter::varExist(axisid))
2138	{
2139	SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims);
2140
2141	CDate timeOrigin=cal->getTimeOrigin() ;
2142	StdOStringStream oss2;
2143	// oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" "
2144	// <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ;
2145	StdString strInitdate=oss2.str() ;
2146	StdString strTimeOrigin=timeOrigin.toString() ;
2147	this->writeTimeAxisAttributes
2148	(axisid, cal->getType(),
2149	StdString("seconds since ").append(strTimeOrigin),
2150	strTimeOrigin, axisBoundId);
2151	}
2152
2153	// Adding time_instant_bounds or time_centered_bounds variables
2154	if (!SuperClassWriter::varExist(axisBoundId))
2155	{
2156	dims.clear() ;
2157	dims.push_back(timeid);
2158	dims.push_back(timeBoundId);
2159	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2160	}
2161
2162	if (field->file->time_counter != CFile::time_counter_attr::none)
2163	{
2164	// Adding time_counter
2165	axisid = getTimeCounterName();
2166	axisBoundId = getTimeCounterName() + "_bounds";
2167	dims.clear();
2168	dims.push_back(timeid);
2169	if (!SuperClassWriter::varExist(axisid))
2170	{
2171	SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims);
2172	SuperClassWriter::addAttribute("axis", string("T"), &axisid);
2173
2174	if (field->file->time_counter != CFile::time_counter_attr::record)
2175	{
2176	CDate timeOrigin = cal->getTimeOrigin();
2177	StdString strTimeOrigin = timeOrigin.toString();
2178
2179	this->writeTimeAxisAttributes(axisid, cal->getType(),
2180	StdString("seconds since ").append(strTimeOrigin),
2181	strTimeOrigin, axisBoundId);
2182	}
2183	}
2184
2185	// Adding time_counter_bound dimension
2186	if (field->file->time_counter != CFile::time_counter_attr::record)
2187	{
2188	if (!SuperClassWriter::varExist(axisBoundId))
2189	{
2190	dims.clear();
2191	dims.push_back(timeid);
2192	dims.push_back(timeBoundId);
2193	SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims);
2194	}
2195	}
2196	}
2197	}
2198	catch (CNetCdfException& e)
2199	{
2200	StdString msg("On writing time axis data: ");
2201	msg.append("In the context : ");
2202	CContext* context = CContext::getCurrent() ;
2203	msg.append(context->getId()); msg.append("\n");
2204	msg.append(e.what());
2205	ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \
2206	const boost::shared_ptr<CCalendar> cal)", << msg);
2207	}
2208	}
2209
2210	//---------------------------------------------------------------
2211
2212	void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name,
2213	const StdString & calendar,
2214	const StdString & units,
2215	const StdString & time_origin,
2216	const StdString & time_bounds,
2217	const StdString & standard_name,
2218	const StdString & long_name)
2219	{
2220	try
2221	{
2222	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2223	SuperClassWriter::addAttribute("long_name", long_name , &axis_name);
2224	SuperClassWriter::addAttribute("calendar", calendar , &axis_name);
2225	SuperClassWriter::addAttribute("units", units , &axis_name);
2226	SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name);
2227	SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name);
2228	}
2229	catch (CNetCdfException& e)
2230	{
2231	StdString msg("On writing time axis Attribute: ");
2232	msg.append("In the context : ");
2233	CContext* context = CContext::getCurrent() ;
2234	msg.append(context->getId()); msg.append("\n");
2235	msg.append(e.what());
2236	ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \
2237	const StdString & calendar,\
2238	const StdString & units, \
2239	const StdString & time_origin, \
2240	const StdString & time_bounds, \
2241	const StdString & standard_name, \
2242	const StdString & long_name)", << msg);
2243	}
2244	}
2245
2246	//---------------------------------------------------------------
2247
2248	void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name,
2249	const StdString & axis,
2250	const StdString & standard_name,
2251	const StdString & long_name,
2252	const StdString & units,
2253	const StdString & nav_model)
2254	{
2255	try
2256	{
2257	if (!axis.empty())
2258	SuperClassWriter::addAttribute("axis" , axis , &axis_name);
2259
2260	SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name);
2261	SuperClassWriter::addAttribute("long_name" , long_name , &axis_name);
2262	SuperClassWriter::addAttribute("units" , units , &axis_name);
2263	SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name);
2264	}
2265	catch (CNetCdfException& e)
2266	{
2267	StdString msg("On writing Axis Attribute: ");
2268	msg.append("In the context : ");
2269	CContext* context = CContext::getCurrent() ;
2270	msg.append(context->getId()); msg.append("\n");
2271	msg.append(e.what());
2272	ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \
2273	const StdString & axis, \
2274	const StdString & standard_name, \
2275	const StdString & long_name, \
2276	const StdString & units, \
2277	const StdString & nav_model)", << msg);
2278	}
2279	}
2280
2281	//---------------------------------------------------------------
2282
2283	void CNc4DataOutput::writeLocalAttributes
2284	(int ibegin, int ni, int jbegin, int nj, StdString domid)
2285	{
2286	try
2287	{
2288	SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin);
2289	SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni);
2290	SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin);
2291	SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj);
2292	}
2293	catch (CNetCdfException& e)
2294	{
2295	StdString msg("On writing Local Attributes: ");
2296	msg.append("In the context : ");
2297	CContext* context = CContext::getCurrent() ;
2298	msg.append(context->getId()); msg.append("\n");
2299	msg.append(e.what());
2300	ERROR("CNc4DataOutput::writeLocalAttributes \
2301	(int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg);
2302	}
2303
2304	}
2305
2306	void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid,
2307	int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)
2308	{
2309	CArray<int,1> array(2) ;
2310
2311	try
2312	{
2313	SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ;
2314	SuperClassWriter::addAttribute("DOMAIN_number", rank) ;
2315	array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1;
2316	SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ;
2317	array=ni_glo,nj_glo ;
2318	SuperClassWriter::addAttribute("DOMAIN_size_global", array) ;
2319	array=ni,nj ;
2320	SuperClassWriter::addAttribute("DOMAIN_size_local", array) ;
2321	array=ibegin+1,jbegin+1 ;
2322	SuperClassWriter::addAttribute("DOMAIN_position_first", array) ;
2323	array=ibegin+ni-1+1,jbegin+nj-1+1 ;
2324	SuperClassWriter::addAttribute("DOMAIN_position_last",array) ;
2325	array=0,0 ;
2326	SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ;
2327	SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array);
2328	SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ;
2329	/*
2330	SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ;
2331	SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ;
2332	SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ;
2333	SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ;
2334	*/
2335	}
2336	catch (CNetCdfException& e)
2337	{
2338	StdString msg("On writing Local Attributes IOIPSL \n");
2339	msg.append("In the context : ");
2340	CContext* context = CContext::getCurrent() ;
2341	msg.append(context->getId()); msg.append("\n");
2342	msg.append(e.what());
2343	ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \
2344	(int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg);
2345	}
2346	}
2347	//---------------------------------------------------------------
2348
2349	void CNc4DataOutput:: writeFileAttributes(const StdString & name,
2350	const StdString & description,
2351	const StdString & conventions,
2352	const StdString & production,
2353	const StdString & timeStamp)
2354	{
2355	try
2356	{
2357	SuperClassWriter::addAttribute("name" , name);
2358	SuperClassWriter::addAttribute("description", description);
2359	SuperClassWriter::addAttribute("title" , description);
2360	SuperClassWriter::addAttribute("Conventions", conventions);
2361	SuperClassWriter::addAttribute("production" , production);
2362	SuperClassWriter::addAttribute("timeStamp" , timeStamp);
2363	}
2364	catch (CNetCdfException& e)
2365	{
2366	StdString msg("On writing File Attributes \n ");
2367	msg.append("In the context : ");
2368	CContext* context = CContext::getCurrent() ;
2369	msg.append(context->getId()); msg.append("\n");
2370	msg.append(e.what());
2371	ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \
2372	const StdString & description, \
2373	const StdString & conventions, \
2374	const StdString & production, \
2375	const StdString & timeStamp)", << msg);
2376	}
2377	}
2378
2379	//---------------------------------------------------------------
2380
2381	void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name,
2382	int data_dim,
2383	int data_ni,
2384	int data_nj,
2385	int data_ibegin,
2386	int data_jbegin)
2387	{
2388	try
2389	{
2390	SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name);
2391	SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name);
2392	SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name);
2393	SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name);
2394	SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name);
2395	}
2396	catch (CNetCdfException& e)
2397	{
2398	StdString msg("On writing Mask Attributes \n ");
2399	msg.append("In the context : ");
2400	CContext* context = CContext::getCurrent() ;
2401	msg.append(context->getId()); msg.append("\n");
2402	msg.append(e.what());
2403	ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \
2404	int data_dim, \
2405	int data_ni, \
2406	int data_nj, \
2407	int data_ibegin, \
2408	int data_jbegin)", << msg);
2409	}
2410	}
2411
2412	///--------------------------------------------------------------
2413
2414	StdSize CNc4DataOutput::getRecordFromTime(Time time)
2415	{
2416	std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time);
2417	if (it == timeToRecordCache.end())
2418	{
2419	StdString timeAxisBoundsId(getTimeCounterName() + "_bounds");
2420	if (!SuperClassWriter::varExist(timeAxisBoundsId))
2421	timeAxisBoundsId = "time_instant_bounds";
2422
2423	CArray<double,2> timeAxisBounds;
2424	SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective);
2425
2426	StdSize record = 0;
2427	double dtime(time);
2428	for (int n = timeAxisBounds.extent(1) - 1; n >= 0; n--)
2429	{
2430	if (timeAxisBounds(1, n) < dtime)
2431	{
2432	record = n + 1;
2433	break;
2434	}
2435	}
2436	it = timeToRecordCache.insert(std::make_pair(time, record)).first;
2437	}
2438	return it->second;
2439	}
2440
2441	///--------------------------------------------------------------
2442
2443	bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const
2444	{
2445	return (this->writtenDomains.find(domainName) != this->writtenDomains.end());
2446	}
2447
2448	bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const
2449	{
2450	return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end());
2451	}
2452
2453	bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const
2454	{
2455	return (this->writtenAxis.find(axisName) != this->writtenAxis.end());
2456	}
2457
2458	bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const
2459	{
2460	return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end());
2461	}
2462
2463	bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const
2464	{
2465	return (this->writtenScalar.find(scalarName) != this->writtenScalar.end());
2466	}
2467
2468	void CNc4DataOutput::setWrittenDomain(const std::string& domainName)
2469	{
2470	this->writtenDomains.insert(domainName);
2471	}
2472
2473	void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName)
2474	{
2475	this->writtenCompressedDomains.insert(domainName);
2476	}
2477
2478	void CNc4DataOutput::setWrittenAxis(const std::string& axisName)
2479	{
2480	this->writtenAxis.insert(axisName);
2481	}
2482
2483	void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName)
2484	{
2485	this->writtenCompressedAxis.insert(axisName);
2486	}
2487
2488	void CNc4DataOutput::setWrittenScalar(const std::string& scalarName)
2489	{
2490	this->writtenScalar.insert(scalarName);
2491	}
2492	} // namespace xios

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source: XIOS/trunk/src/io/nc4_data_output.cpp @ 902

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