1 | #!/bin/bash |
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2 | install_dir=$PWD |
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3 | compil_full="false" |
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4 | use_oasis="false" |
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5 | oasis="oasis3_mct" |
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6 | build_path="./" |
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7 | build_dir="./" |
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8 | build_suffixed="false" |
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9 | use_extern_boost="false" |
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10 | use_extern_blitz="false" |
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11 | use_memtrack="false" |
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12 | job="1" |
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13 | netcdf_lib="netcdf4_par" |
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14 | compil_mode="prod" |
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15 | arch_path=$PWD/"arch" |
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16 | arch_default_path=$PWD/"arch" |
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17 | arch_defined="FALSE" |
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18 | arch_path_defined="FALSE" |
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19 | fcm_version=new |
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20 | |
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21 | # Traitement de la ligne de commande |
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22 | while (($# > 0)) |
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23 | do |
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24 | case $1 in |
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25 | "-h"|"--help"|"-help") |
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26 | echo "make_xios - installs XIOS on your architecture" |
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27 | echo "make_xios [options]" |
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28 | echo "options :" |
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29 | echo " [--prod] : compilation in production mode (default)" |
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30 | echo " [--dev] : compilation in development mode" |
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31 | echo " [--debug] : compilation in debug mode" |
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32 | echo " --arch arch : to choose target architecture" |
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33 | echo " [--avail] : to know available target architectures " |
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34 | echo " [--full] : to generate dependencies and recompile from scratch" |
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35 | echo " [--use_oasis 'oasis3' 'oasis3_mct' : default oasis3_mct] : to use Oasis coupler" |
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36 | echo " [--build_path : absolute path to the build directory" |
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37 | echo " [--build_dir : name of the build directory" |
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38 | echo " [--build_suffixed : generate automatically suffixed name of the build directory (e.g. config_X64_CURIE_prod)" |
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39 | echo " [--use_extern_boost : to use external boost library" |
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40 | echo " [--use_extern_blitz : to use external blitz library" |
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41 | echo " [--doc] : to generate Doxygen documentation (not available yet)" |
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42 | echo " [--job ntasks] : to use parallel compilation with ntasks" |
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43 | echo " [--netcdf_lib 'netcdf4_par'/'netcdf4_seq'/'netcdf4_internal' : default netcdf4_par] : choice of netcdf library" |
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44 | echo " [--memtrack full/light] : tracking memory leak - developper only" |
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45 | echo " [--fcm] : fcm version compatibility : 'new'/'old'" |
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46 | echo "Example : ./make_xios --prod --arch PW6_VARGAS" |
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47 | echo "Example : ./make_xios --avail" |
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48 | exit;; |
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49 | "--prod") compil_mode="prod" ; shift ;; |
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50 | "--dev") compil_mode="dev" ; shift ;; |
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51 | "--debug") compil_mode="debug" ; shift ;; |
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52 | "--arch") arch=$2 ; arch_defined="TRUE"; shift ; shift ;; |
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53 | "--arch_path") arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;; |
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54 | "--avail") ls arch/*.fcm | cut -d"-" -f2 | cut -d"." -f1 ; exit ;; |
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55 | "--full") compil_full="true" ; shift ;; |
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56 | "--use_oasis") use_oasis="true" oasis=$2 ; shift ; shift ;; |
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57 | "--build_path") build_path=$2 ; shift ; shift ;; |
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58 | "--build_dir") build_dir=$2 ; shift ; shift ;; |
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59 | "--build_suffixed") build_suffixed="true" ; shift ;; |
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60 | "--use_extern_boost") use_extern_boost="true" ; shift ;; |
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61 | "--use_extern_blitz") use_extern_blitz="true" ; shift ;; |
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62 | "--doc") doc="true" ; shift ;; |
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63 | "--job") job=$2 ; shift ; shift ;; |
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64 | "--netcdf_lib") netcdf_lib=$2 ; shift ; shift ;; |
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65 | "--memtrack") use_memtrack="true" memtrack=$2 ; shift ; shift ;; |
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66 | "--fcm") fcm_version=$2 ; shift ; shift ;; |
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67 | *) code="$1" ; shift ;; |
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68 | esac |
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69 | done |
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70 | |
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71 | # Installation des sources |
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72 | nb_files_gz=`ls $install_dir/tools/archive | grep tar.gz | wc -l` |
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73 | if [ ${nb_files_gz} -ne 0 ] |
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74 | then |
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75 | echo -e "- uncompress archives ..." |
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76 | for tarname in `ls $install_dir/tools/archive/*.tar.gz` ; do |
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77 | if ( [[ ${tarname} == "${install_dir}/tools/archive/boost.tar.gz" ]] && [[ "$use_extern_boost" == "true" ]] ) || ( [[ ${tarname} == "${install_dir}/tools/archive/blitz.tar.gz" ]] && [[ "$use_extern_blitz" == "true" ]] ) |
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78 | then |
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79 | continue |
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80 | fi |
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81 | gunzip -f "$tarname" |
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82 | tar -xf ${tarname%.gz} |
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83 | done |
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84 | fi |
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85 | |
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86 | # Definition of the root directory of the build |
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87 | |
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88 | if [[ "$build_path" == "./" ]]; then |
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89 | install_dir=$PWD |
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90 | else |
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91 | install_dir=${build_path} |
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92 | fi |
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93 | |
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94 | if [[ "$build_suffixed" == "true" ]]; then |
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95 | install_dir="${install_dir}/config_${arch}_${compil_mode}" |
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96 | else |
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97 | install_dir="${install_dir}/${build_dir}" |
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98 | fi |
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99 | |
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100 | mkdir -p $install_dir |
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101 | |
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102 | rm -f ${PWD}/bld_dir.cfg |
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103 | echo "inc ${install_dir}/arch.fcm" >> ${PWD}/bld_dir.cfg |
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104 | echo "inc ${install_dir}/config.fcm" >> ${PWD}/bld_dir.cfg |
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105 | echo "dir::root ${install_dir}" >> ${PWD}/bld_dir.cfg |
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106 | |
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107 | # Vérification de la présence d'un identifiant d'architecture. |
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108 | |
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109 | ############################################################### |
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110 | # lecture des chemins propres a l'architecture de la machine # |
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111 | # et configuration de l'environnement # |
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112 | ############################################################### |
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113 | |
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114 | rm -f .void_file |
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115 | echo > .void_file |
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116 | rm -rf .void_dir |
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117 | mkdir .void_dir |
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118 | |
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119 | if [[ "$arch_defined" == "TRUE" ]] |
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120 | then |
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121 | rm -f ${install_dir}/arch.path |
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122 | rm -f ${install_dir}/arch.fcm |
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123 | rm -f ${install_dir}/arch.env |
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124 | |
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125 | if test -f $arch_path/arch-${arch}.path |
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126 | then |
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127 | ln -s $arch_path/arch-${arch}.path ${install_dir}/arch.path |
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128 | elif test -f $arch_default_path/arch-${arch}.path |
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129 | then |
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130 | ln -s $arch_default_path/arch-${arch}.path ${install_dir}/arch.path |
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131 | fi |
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132 | |
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133 | if test -f $arch_path/arch-${arch}.fcm |
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134 | then |
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135 | ln -s $arch_path/arch-${arch}.fcm ${install_dir}/arch.fcm |
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136 | elif test -f $arch_default_path/arch-${arch}.fcm |
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137 | then |
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138 | ln -s $arch_default_path/arch-${arch}.fcm ${install_dir}/arch.fcm |
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139 | fi |
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140 | |
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141 | if test -f $arch_path/arch-${arch}.env |
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142 | then |
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143 | ln -s $arch_path/arch-${arch}.env ${install_dir}/arch.env |
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144 | elif test -f $arch_default_path/arch-${arch}.env |
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145 | then |
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146 | ln -s $arch_default_path/arch-${arch}.env ${install_dir}/arch.env |
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147 | else |
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148 | ln -s .void_file ${install_dir}/arch.env |
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149 | fi |
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150 | source ${install_dir}/arch.env |
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151 | source ${install_dir}/arch.path |
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152 | else |
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153 | echo "Please choose a target achitecture --> list all available architecture using make_xios --avail!" |
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154 | exit 1 |
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155 | fi |
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156 | |
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157 | # Vérification de la présence d'un mode de compilation. |
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158 | |
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159 | if [[ "$compil_mode" == "prod" ]] |
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160 | then |
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161 | COMPIL_CFLAGS="%PROD_CFLAGS" |
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162 | COMPIL_FFLAGS="%PROD_FFLAGS" |
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163 | elif [[ "$compil_mode" == "dev" ]] |
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164 | then |
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165 | COMPIL_CFLAGS="%DEV_CFLAGS" |
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166 | COMPIL_FFLAGS="%DEV_FFLAGS" |
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167 | elif [[ "$compil_mode" == "debug" ]] |
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168 | then |
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169 | COMPIL_CFLAGS="%DEBUG_CFLAGS" |
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170 | COMPIL_FFLAGS="%DEBUG_FFLAGS" |
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171 | fi |
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172 | |
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173 | rm -r $PWD/extern/netcdf4 |
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174 | |
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175 | if [[ "$netcdf_lib" == "netcdf4_par" ]] |
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176 | then |
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177 | ln -s $PWD/.void_dir $PWD/extern/netcdf4 |
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178 | XIOS_CPPKEY="$XIOS_CPPKEY USING_NETCDF_PAR" |
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179 | elif [[ "$netcdf_lib" == "netcdf4_seq" ]] |
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180 | then |
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181 | ln -s $PWD/.void_dir $PWD/extern/netcdf4 |
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182 | elif [[ "$netcdf_lib" == "netcdf4_internal" ]] |
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183 | then |
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184 | ln -s $PWD/extern/src_netcdf4 $PWD/extern/netcdf4 |
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185 | XIOS_CPPKEY="$XIOS_CPPKEY USING_NETCDF_PAR USING_NETCDF_INTERNAL" |
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186 | export NETCDF_INCDIR="-I${PWD}/extern/netcdf4" |
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187 | export NETCDF_LIBDIR="" |
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188 | export NETCDF_LIB="" |
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189 | else |
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190 | echo "Bad choice for --netcdf_lib argument : choose between 'netcdf4_par','netcdf4_seq' or 'netcdf4_internal'" |
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191 | exit |
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192 | fi |
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193 | |
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194 | if [[ "$use_oasis" == "true" ]] |
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195 | then |
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196 | if [[ "$oasis" == "oasis3_mct" ]] |
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197 | then |
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198 | XIOS_CPPKEY="$XIOS_CPPKEY USE_OMCT" |
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199 | elif [[ "$oasis" == "oasis3" ]] |
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200 | then |
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201 | XIOS_CPPKEY="$XIOS_CPPKEY USE_OASIS" |
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202 | OASIS_INCDIR="-I$PWD/../../prism/X64/build/lib/psmile.MPI1" |
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203 | OASIS_LIBDIR="-L$PWD/../../prism/X64/lib" |
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204 | OASIS_LIB="-lpsmile.MPI1 -lmpp_io" |
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205 | else |
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206 | echo "Bad choice for --use_oasis argument : choose between 'oasis3','oasis3_mct'" |
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207 | exit |
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208 | fi |
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209 | NETCDF_LIB="-lnetcdff -lnetcdf" |
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210 | XIOS_FINCDIR="$OASIS_INCDIR $XIOS_FINCDIR" |
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211 | XIOS_LIB="$OASIS_LIBDIR $OASIS_LIB $XIOS_LIB" |
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212 | fi |
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213 | |
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214 | |
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215 | # Detecting if parallel compression is available : |
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216 | # - NetCDF is HDF5 based and >= 4.7.4 ? |
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217 | # - HDF5 is parallel and >= 1.10.3 ? |
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218 | USE_HDF5=0 |
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219 | if [[ ! -z $NETCDF_INCDIR ]] |
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220 | then |
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221 | NETCDF_LOOKUP=`echo ${NETCDF_INCDIR} | sed 's/\-I/\ /g'` |
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222 | netcdf_meta_file=`find $NETCDF_LOOKUP -name netcdf_meta.h 2> /dev/null` |
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223 | else |
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224 | for dir in `echo $CPATH | sed 's/\:/\ /g'` ; do |
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225 | if [ -f "$dir/netcdf_meta.h" ] |
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226 | then |
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227 | netcdf_meta_file=$dir/netcdf_meta.h |
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228 | break |
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229 | fi |
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230 | done |
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231 | fi |
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232 | if [[ ! -z $netcdf_meta_file ]] |
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233 | then |
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234 | NC_MAJOR=`grep "NC_VERSION_MAJOR" $netcdf_meta_file | awk '{ print $3 }'` |
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235 | NC_MINOR=`grep "NC_VERSION_MINOR" $netcdf_meta_file | awk '{ print $3 }'` |
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236 | NC_PATCH=`grep "NC_VERSION_PATCH" $netcdf_meta_file | awk '{ print $3 }'` |
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237 | if ( [[ "$NC_MAJOR" -ge 5 || ( "$NC_MAJOR" -eq 4 && "$NC_MINOR" -ge 8 )|| ( "$NC_MAJOR" -eq 4 && "$NC_MINOR" -eq 7 && "$NC_PATCH" -ge 4 ) ]] ) |
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238 | then |
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239 | USE_HDF5=`grep NC_HAS_HDF5 $netcdf_meta_file | awk '{ print $3 }'` |
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240 | fi |
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241 | fi |
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242 | |
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243 | if [ "$USE_HDF5" == "1" ] |
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244 | then |
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245 | # https://forum.hdfgroup.org/t/parallel-compression-support-detection/5398 |
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246 | if [[ ! -z $HDF5_LIBDIR ]] |
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247 | then |
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248 | HDF5_LOOKUP=`echo ${HDF5_LIBDIR} | sed 's/\-L/\ /g'` |
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249 | hdf5_settings_file=`find $HDF5_LOOKUP -name libhdf5.settings 2> /dev/null` |
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250 | else |
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251 | for dir in `echo $LD_LIBRARY_PATH | sed 's/\:/\ /g'` ; do |
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252 | if [ -f "$dir/libhdf5.settings" ] |
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253 | then |
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254 | hdf5_settings_file=$dir/libhdf5.settings |
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255 | break |
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256 | fi |
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257 | done |
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258 | fi |
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259 | if [[ ! -z $hdf5_settings_file ]] |
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260 | then |
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261 | HDF5_VERSION=`grep "HDF5 Version" $hdf5_settings_file | awk -F ':' '{ print $2 }'` |
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262 | HDF5_MAJOR_VERSION=`echo $HDF5_VERSION | awk -F '.' '{ print $2 }'` |
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263 | HDF5_MINOR_VERSION=`echo $HDF5_VERSION | awk -F '.' '{ print $3 }'` |
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264 | HDF5_PARALLEL=`grep "Parallel HDF5" $hdf5_settings_file | awk -F ':' '{ print $2 }'` |
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265 | HDF5_DEFLATE=`grep "I/O filters (external)" $hdf5_settings_file | awk -F ':' '{ print $2 }'` |
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266 | if ( [[ "$HDF5_MAJOR_VERSION" -ge 11 || ( "$HDF5_MAJOR_VERSION" -eq 10 && "$HDF5_MINOR_VERSION" -ge 3 ) ]] ) |
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267 | then |
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268 | if [[ "$HDF5_PARALLEL" =~ "yes" && "$HDF5_DEFLATE" =~ "zlib" ]] |
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269 | then |
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270 | XIOS_CPPKEY="$XIOS_CPPKEY PARALLEL_COMPRESSION" |
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271 | fi |
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272 | fi |
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273 | fi # hdf5_settings_file |
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274 | fi |
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275 | if [[ "$XIOS_CPPKEY" =~ "PARALLEL_COMPRESSION" ]] |
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276 | then |
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277 | echo "->Parallel compression is available" |
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278 | else |
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279 | echo "->Parallel compression is NOT available" |
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280 | fi |
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281 | # End "Detecting if parallel compression is available" |
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282 | |
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283 | |
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284 | # Setting path for boost |
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285 | if [[ "$use_extern_boost" == "true" ]] |
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286 | then |
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287 | rm -r $PWD/extern/boost |
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288 | ln -s $PWD/.void_dir $PWD/extern/boost |
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289 | else |
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290 | export BOOST_INCDIR="-I${PWD}/extern/boost" |
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291 | export BOOST_LIBDIR="" |
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292 | export BOOST_LIB="" |
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293 | fi |
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294 | |
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295 | # Setting path for blitz |
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296 | if [[ "$use_extern_blitz" == "true" ]] |
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297 | then |
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298 | rm -r $PWD/extern/blitz |
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299 | ln -s $PWD/.void_dir $PWD/extern/blitz |
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300 | else |
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301 | echo "src::blitz $PWD/extern/blitz/src" >> ${PWD}/bld_dir.cfg |
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302 | export BLITZ_INCDIR="-I${PWD}/extern/blitz" |
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303 | export BLITZ_LIBDIR="" |
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304 | export BLITZ_LIB="" |
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305 | fi |
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306 | |
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307 | |
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308 | if [[ "$use_memtrack" == "true" ]] |
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309 | then |
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310 | XIOS_CPPKEY="$XIOS_CPPKEY XIOS_MEMTRACK" |
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311 | |
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312 | if [[ "$memtrack" == "light" ]] |
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313 | then |
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314 | XIOS_CPPKEY="$XIOS_CPPKEY XIOS_MEMTRACK_LIGHT" |
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315 | elif [[ "$memtrack" == "full" ]] |
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316 | then |
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317 | XIOS_CPPKEY="$XIOS_CPPKEY XIOS_MEMTRACK_FULL" |
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318 | else |
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319 | echo "Bad choice for --memtrack argument : choose between 'light','full'" |
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320 | exit |
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321 | fi |
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322 | fi |
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323 | |
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324 | XIOS_CINCDIR="$NETCDF_INCDIR $HDF5_INCDIR $MPI_INCDIR $BOOST_INCDIR $BLITZ_INCDIR" |
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325 | XIOS_FINCDIR="$NETCDF_INCDIR $XIOS_FINCDIR $MPI_INCDIR $BOOST_INCDIR $BLITZ_INCDIR" |
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326 | |
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327 | XIOS_LIB="$XIOS_LIB $NETCDF_LIBDIR $HDF5_LIBDIR $MPI_LIBDIR $NETCDF_LIB $HDF5_LIB $MPI_LIB" |
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328 | |
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329 | rm -f ${install_dir}/config.fcm |
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330 | echo "%COMPIL_CFLAGS $COMPIL_CFLAGS" >> ${install_dir}/config.fcm |
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331 | echo "%COMPIL_FFLAGS $COMPIL_FFLAGS" >> ${install_dir}/config.fcm |
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332 | echo "%CPP_KEY $XIOS_CPPKEY" >> ${install_dir}/config.fcm |
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333 | |
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334 | echo "%CBASE_INC $XIOS_CINCDIR" >> ${install_dir}/config.fcm |
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335 | echo "%FBASE_INC $XIOS_FINCDIR" >> ${install_dir}/config.fcm |
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336 | echo "%ARCH_LD $XIOS_LIB" >> ${install_dir}/config.fcm |
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337 | |
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338 | echo "=> Using "$compil_mode" mode for compiling under architecture \""$arch"\" !" |
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339 | |
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340 | # Création de la documentation doxygen. |
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341 | if [[ !(-z $doc) ]] |
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342 | then |
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343 | echo -e "- Create Doxygen documentation (disabled)..." |
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344 | #doxygen -s |
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345 | fi |
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346 | |
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347 | make_dir=$PWD |
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348 | |
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349 | if [[ "$fcm_version" == "new" ]] |
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350 | then |
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351 | export PATH=$PWD/tools/FCM_NEW/bin:$PATH |
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352 | elif [[ "$fcm_version" == "old" ]] |
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353 | then |
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354 | export PATH=$PWD/tools/FCM_OLD/bin:$PATH |
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355 | else |
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356 | echo "=> Bad option for --fcm flag : "$fcm_version" , only 'new' or 'old' permitted" |
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357 | fi |
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358 | |
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359 | if [[ "$compil_full" == "true" ]] |
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360 | then |
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361 | fcm build --clean --ignore-lock |
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362 | fcm build -f --ignore-lock -j $job |
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363 | else |
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364 | fcm build --ignore-lock -j $job |
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365 | fi |
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366 | |
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367 | build_exit_status=$? |
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368 | |
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369 | if [[ $build_exit_status == 0 ]] |
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370 | then |
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371 | set nothing |
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372 | # cd $WORKDIR/XIOS_NEMO_COUPLE/modeles/NEMO/WORK |
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373 | # cd $WORKDIR/XIOS_NEMO/modeles/NEMO/WORK |
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374 | # make |
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375 | fi |
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376 | |
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377 | exit $build_exit_status |
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