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Ticket Resolution Summary Owner Reporter
#43 wontfix Having the possibility of enforcing the addition of a axis to a file ymipsl millour
Description

So far if multiple axes are defined (e.g. axis1, axis2, etc.), but only one is used (e.g.all output fields in file are with axis_ref="axis2"), then it is the only axis written to the file.

Allowing users to specify that alternative axes, although not used, should be included in the output file would be useful.

Maybe by adding a flag output="always" to the axis (or file?) parameters?

#44 fixed problem with xios_field_is_activate ymipsl jgipsl
Description

Concerning XIOS rev 477

The problem is described in the following exemple in ORCHIDEE :

       IF (xios_field_is_active("RootMoist") .OR. xios_field_is_active("DelSoilMoist") .OR. &
            xios_field_is_active("DelIntercept") .OR. xios_field_is_active("DelSWE") .OR. &
            xios_field_is_active("SoilWet")) THEN

          almaoutput=.TRUE.
          WRITE(numout,*) 'almaoutput has been set to true in xios_orchidee_init'
       END IF

Case 1) Everything is fine when these variables are declared only in field_def_orchidee.xml. almaoutput becomes FALSE. See exemple at curie : /ccc/scratch/cont003/dsm/p86ghatt/LMDZOR/XIOS/RUNDIR/TESTING/RUN_rev1960/prod_mpi_omp/TestAlma

Case 2) If one or several of these variables are set in file_def_orchidee.xml but the file is deactivated, the result is almaoutput=TRUE. This is not ok. See here an extract from file_def_orchidee.xml :

<file id="sechiba2" name="sechiba_out_2_xios" output_level="10" output_freq="1d" enabled=".FALSE.">
  <field field_ref="RootMoist" level="1"/>
  <field field_ref="Areas" level="1"/>

Exemple : /ccc/scratch/cont003/dsm/p86ghatt/LMDZOR/XIOS/RUNDIR/TESTING/RUN_rev1960/prod_mpi_omp/TestAlma2

I think the behaviour of xios_field_is_activate was correct in earlier versions of XIOS.

#45 fixed problem including a file containing a context in iodef.xml ymipsl jgipsl
Description

Following exemple does not work :

iodef.xml :

<?xml version="1.0"?>
<simulation>
  <context id="xios">
    <variable_definition>
      <variable_group id="buffer">
            buffer_size = 80000000
            buffer_server_factor_size = 2
         </variable_group>
      <variable_group id="parameters">
        <variable id="using_server" type="boolean">false</variable>
        <variable id="info_level" type="int">0</variable>
      </variable_group>
    </variable_definition>
  </context>

  <context src=".context_orchidee.xml"/>

</simulation>

context_orchidee.xml :

  <context id="orchidee">
    <field_definition src="./field_def_orchidee.xml"/>
    <file_definition src="./file_def_orchidee.xml"/>

    <domain_definition>
      <domain id="domain_landpoints"/>
    </domain_definition>

    <axis_definition>
      <!-- Vertical axis and extra dimensions in sechiba -->
      <axis id="veget" standard_name="model_level_number" long_name="Vegetation types" unit="1"/>
      <axis id="laiax" standard_name="model_level_number" long_name="Nb LAI" unit="1"/>
      <axis id="solth" standard_name="model_level_number" long_name="Soil levels" unit="m"/>
      <axis id="soiltyp" standard_name="model_level_number" long_name="Soil types" unit="1"/>
      <axis id="nobio" standard_name="model_level_number" long_name="Other surface types" unit="1"/>
      <axis id="albtyp" standard_name="model_level_number" long_name="Albedo types" unit="1"/>
      <axis id="solay" standard_name="model_level_number" long_name="Hydrol soil levels" unit="m"/>
      <!-- Vertical axis and extra dimensions in stomate -->
      <axis id="PFT" standard_name="model_level_number" long_name="Plant functional type" unit="1"/>
      <axis id="P10" standard_name="model_level_number" long_name="Pool 10 years" unit="1"/>
      <axis id="P100" standard_name="model_level_number" long_name="Pool 100 years" unit="1"/>
      <axis id="P11" standard_name="model_level_number" long_name="Pool 10 years + 1" unit="1"/>
      <axis id="P101" standard_name="model_level_number" long_name="Pool 100 years + 1" unit="1"/>
    </axis_definition>
  </context>

The same example works if putting the contents from the file context_orchidee.xml directly into iodef.xml instead of including the file by src.

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