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#64 fixed Compile error when using option netcdf4_internal on Bull Intel with mpiifort ymipsl ssenesi

In that case, with release 549, I get a 'catastrophic error' (I didn't choose that qualifier myself !) :

fcm_internal compile:C netcdf /home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4/mmapio.c mmapio.o 1 mpiicc -o mmapio.o -DUSING_NETCDF_PAR -DUSING_NETCDF_INTERNAL -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/inc -ansi -diag-disable 1125 -diag-disable 279 -openmp -openmp-threadprivate compat -openmp-report2 -O3 -D BOOST_DISABLE_ASSERTS -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4 -I/opt/softs/libraries/ICC13.1.4.183/hdf5-1.8.11_par/include -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/src_netcdf -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/boost/include -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/rapidxml/include -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/blitz/include -c /home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4/mmapio.c /home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4/mmapio.c(38): catastrophic error: #error directive: mmap not fully implemented: missing MAP_ANONYMOUS

#error mmap not fully implemented: missing MAP_ANONYMOUS

#63 invalid Complementing field definition by sourcing from an alternate file does not work ymipsl ssenesi

When wanting to add some field definition by sourcing an alternate file, you should be able to write :

<field_definition> <field id="default_field"domain_ref="FULL"></field_definition> <field_definition id="field_definition" src="./surfex_base.xml" />

where the content of surfex_base.xml is e.g. : <field_definition > <field id="LE" name="leprime" /> </field_definition>

This crashes XIOS with "MPI_ERR_COMM: invalid communicator" (while putting the equivalent content at the same place in the master xml file works fine)

#62 fixed Feeding a 2D global grid with processes working 1D is not working ymipsl ssenesi

Attached source test1d.90 is a modified version of test_complete.f90. It reduces nj_glo to a value of 3 (instead of 100°. Next, it defines "domain_1" as being the same global domain as "domain_A", being fed by processes which work on the same 2D sub-domains as for domain_A, except that they declare themselves to Xios as being 1D sub-domains, and they provide i_index and j_index for describing the mapping of the 1D local data to the 2D global domain.

Execution results in incorrect data in field_1 (which actually receive, at some location, values from field_A at llm=3) . This may be due to misunderstanding in the API arguments in this configuration

iodef.xml and result file are also attached

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