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Ticket Resolution Summary Owner Reporter
#65 fixed Regression caused by automatic detection of buffer size mhnguyen rlacroix

As far as I can tell the automatic detection of buffer size is causing two issues (closely related):

  • XIOS will raise an error if a context has no enabled output file which it has no good reasons to do.
  • XIOS can fail if internal messages are bigger than the estimated output data.

This can probably be solved by always allocating a buffer with a fixed minimum size we know will always be sufficient to allocate the internal messages.

#64 fixed Compile error when using option netcdf4_internal on Bull Intel with mpiifort ymipsl ssenesi

In that case, with release 549, I get a 'catastrophic error' (I didn't choose that qualifier myself !) :

fcm_internal compile:C netcdf /home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4/mmapio.c mmapio.o 1 mpiicc -o mmapio.o -DUSING_NETCDF_PAR -DUSING_NETCDF_INTERNAL -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/inc -ansi -diag-disable 1125 -diag-disable 279 -openmp -openmp-threadprivate compat -openmp-report2 -O3 -D BOOST_DISABLE_ASSERTS -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4 -I/opt/softs/libraries/ICC13.1.4.183/hdf5-1.8.11_par/include -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/src_netcdf -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/boost/include -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/rapidxml/include -I/home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/blitz/include -c /home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4/mmapio.c /home/gmgec/mrgu/senesis/SAVE/XIOS_mt_par/extern/netcdf4/mmapio.c(38): catastrophic error: #error directive: mmap not fully implemented: missing MAP_ANONYMOUS

#error mmap not fully implemented: missing MAP_ANONYMOUS

#63 invalid Complementing field definition by sourcing from an alternate file does not work ymipsl ssenesi

When wanting to add some field definition by sourcing an alternate file, you should be able to write :

<field_definition> <field id="default_field"domain_ref="FULL"></field_definition> <field_definition id="field_definition" src="./surfex_base.xml" />

where the content of surfex_base.xml is e.g. : <field_definition > <field id="LE" name="leprime" /> </field_definition>

This crashes XIOS with "MPI_ERR_COMM: invalid communicator" (while putting the equivalent content at the same place in the master xml file works fine)

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