Context Navigation

source: trunk/libIGCM/AA_job @ 1619

Last change on this file since 1619 was 1619, checked in by acosce, 12 months ago
fix a bug : error message was not in the appropriate section
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 26.8 KB

Line
1	#-Q- curie #!/bin/ksh
2	#-Q- curie ######################
3	#-Q- curie ## CURIE TGCC/CEA ##
4	#-Q- curie ######################
5	#-Q- curie #MSUB -r ::Jobname:: # Job Name
6	#-Q- curie #MSUB -o Script_Output_::Jobname::.000001 # standard output
7	#-Q- curie #MSUB -e Script_Output_::Jobname::.000001 # error output
8	#-Q- curie #MSUB -eo
9	#-Q- curie #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
10	#-Q- curie #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
11	#-Q- curie #MSUB -x # exclusive node. To specify only for MPMD together with the one below
12	#-Q- curie #MSUB -E '--cpu_bind=none'
13	#-Q- curie ##MSUB -E '--distribution cyclic'
14	#-Q- curie #MSUB -T 86400 # Wall clock limit (seconds)
15	#-Q- curie #MSUB -q standard # thin nodes
16	#-Q- curie ##MSUB -U high
17	#-Q- curie #MSUB -U medium
18	#-Q- curie ##MSUB -U low
19	#-Q- curie #MSUB -A ::default_project::
20	#-Q- curie #MSUB -E --no-requeue
21	#-Q- curie # Below specific options that can be activated
22	#-Q- curie ##MSUB -q ivybridge # Option for Airain
23	#-Q- curie
24	#-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
25	#-Q- curie set +x
26	#-Q- irene #!/bin/ksh
27	#-Q- irene ######################
28	#-Q- irene ## IRENE TGCC/CEA ##
29	#-Q- irene ######################
30	#-Q- irene #MSUB -r ::Jobname:: # Job Name
31	#-Q- irene #MSUB -o Script_Output_::Jobname::.000001 # standard output
32	#-Q- irene #MSUB -e Script_Output_::Jobname::.000001 # error output
33	#-Q- irene #MSUB -eo
34	#-Q- irene #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
35	#-Q- irene #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
36	#-Q- irene #MSUB -x # exclusive node. To specify only for MPMD together with the one below
37	#-Q- irene #MSUB -E '--cpu_bind=none'
38	#-Q- irene #MSUB -T ::WallTime:: # Wall clock limit (seconds)
39	#-Q- irene #MSUB -A ::default_project::
40	#-Q- irene #MSUB -q skylake
41	#-Q- irene #MSUB -m store,work,scratch
42	#-Q- irene
43	#-Q- irene BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
44	#-Q- irene set +x
45	#-Q- irene-amd #!/bin/ksh
46	#-Q- irene-amd ######################
47	#-Q- irene-amd ## IRENE-AMD TGCC/CEA ##
48	#-Q- irene-amd ######################
49	#-Q- irene-amd #MSUB -r ::Jobname:: # Job Name
50	#-Q- irene-amd #MSUB -o Script_Output_::Jobname::.000001 # standard output
51	#-Q- irene-amd #MSUB -e Script_Output_::Jobname::.000001 # error output
52	#-Q- irene-amd #MSUB -eo
53	#-Q- irene-amd #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case)
54	#-Q- irene-amd #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD
55	#-Q- irene-amd #MSUB -x # exclusive node. To specify only for MPMD together with the one below
56	#-Q- irene-amd #MSUB -T ::WallTime:: # Wall clock limit (seconds)
57	#-Q- irene-amd #MSUB -A ::default_project::
58	#-Q- irene-amd #MSUB -q rome
59	#-Q- irene-amd #MSUB -m store,work,scratch
60	#-Q- irene-amd
61	#-Q- irene-amd BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC
62	#-Q- irene-amd set +x
63	#-Q- jeanzay #!/bin/ksh
64	#-Q- jeanzay ######################
65	#-Q- jeanzay ## JEANZAY IDRIS ##
66	#-Q- jeanzay ######################
67	#-Q- jeanzay #SBATCH --job-name=::Jobname:: # Job Name
68	#-Q- jeanzay #SBATCH --output=Script_Output_::Jobname::.000001 # standard output
69	#-Q- jeanzay #SBATCH --error=Script_Output_::Jobname::.000001 # error output
70	#-Q- jeanzay #SBATCH --ntasks=::JobNumProcTot:: # Number of MPI tasks
71	#-Q- jeanzay #SBATCH --cpus-per-task=::openMPthreads:: # Number of openMP threads.
72	#-Q- jeanzay #SBATCH --hint=nomultithread # 1 processus MPI par par physical core (no hyperthreading)
73	#-Q- jeanzay #SBATCH --time=::WallTime:: # Wall clock limit (minutes)
74	#-Q- jeanzay #SBATCH --account ::default_project::@cpu
75	#-Q- jeanzay
76	#-Q- jeanzay ##BATCH_NUM_PROC_TOT=$BRIDGE_SBATCH_NPROC
77	#-Q- jeanzay set +x
78	#-Q- ada #!/bin/ksh
79	#-Q- ada # ######################
80	#-Q- ada # ## ADA IDRIS ##
81	#-Q- ada # ######################
82	#-Q- ada # Job name
83	#-Q- ada # @ job_name = ::Jobname::
84	#-Q- ada # Standard output file name
85	#-Q- ada # @ output = Script_Output_::Jobname::.000001
86	#-Q- ada # Error output file name
87	#-Q- ada # @ error = Script_Output_::Jobname::.000001
88	#-Q- ada # Job type
89	#-Q- ada # @ job_type = parallel
90	#-Q- ada # Total number of tasks
91	#-Q- ada # @ total_tasks = ::JobNumProcTot::
92	#-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task
93	#-Q- ada # @ parallel_threads = ::openMPthreads::
94	#-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb
95	#-Q- ada # @ as_limit = 3.5gb
96	#-Q- ada # Maximum CPU time per task hh:mm:ss
97	#-Q- ada # @ wall_clock_limit = 1:00:00
98	#-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit)
99	#-Q- ada # End of the header options
100	#-Q- ada # @ queue
101	#-Q- obelix ######################
102	#-Q- obelix ## OBELIX LSCE ##
103	#-Q- obelix ######################
104	#-Q- obelix #PBS -N ::Jobname::
105	#-Q- obelix #PBS -m a
106	#-Q- obelix #PBS -j oe
107	#-Q- obelix #PBS -q mediump
108	#-Q- obelix #PBS -o Script_Output_::Jobname::.000001
109	#-Q- obelix #PBS -S /bin/ksh
110	#-Q- obelix #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
111	#-Q- obelix #PBS -l nodes=1:ppn=::JobNumProcTot::
112	#-Q- mesoipsl #!/bin/ksh
113	#-Q- mesoipsl ######################
114	#-Q- mesoipsl ## MESO ESPRI IPSL ##
115	#-Q- mesoipsl ######################
116	#-Q- mesoipsl #SBATCH --job-name=::Jobname:: # Job Name
117	#-Q- mesoipsl #SBATCH --output=Script_Output_::Jobname::.000001 # standard output
118	#-Q- mesoipsl #SBATCH --error=Script_Output_::Jobname::.000001 # error output
119	#-Q- mesoipsl #SBATCH --ntasks=::JobNumProcTot:: # Number of MPI tasks
120	#-Q- mesoipsl #SBATCH --cpus-per-task=::openMPthreads:: # Number of openMP threads.
121	#-Q- mesoipsl #SBATCH --hint=nomultithread # 1 processus MPI par par physical core (no hyperthreading)
122	#-Q- mesoipsl #SBATCH --time=30 # Wall clock limit (minutes)
123	#-Q- mesoipsl set +x
124	#-Q- ifort_CICLAD ######################
125	#-Q- ifort_CICLAD ## CICLAD IPSL ##
126	#-Q- ifort_CICLAD ######################
127	#-Q- ifort_CICLAD #PBS -N ::Jobname::
128	#-Q- ifort_CICLAD #PBS -m a
129	#-Q- ifort_CICLAD #PBS -j oe
130	#-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only
131	#-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001
132	#-Q- ifort_CICLAD #PBS -S /bin/ksh
133	#-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot::
134	#-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot::
135	#-Q- ifort_CICLAD #PBS -l mem=6gb
136	#-Q- ifort_CICLAD #PBS -l vmem=30gb
137	#-Q- default #!/bin/ksh
138	#-Q- default ##################
139	#-Q- default ## DEFAULT HOST ##
140	#-Q- default ##################
141	#-Q- default #For MPI use, uncomment next line :
142	#-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot::
143
144	#**************************************************************
145	# Author: Sebastien Denvil
146	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
147	# $Revision:: $ Revision of last commit
148	# $Author:: $ Author of last commit
149	# $Date:: $ Date of last commit
150	# IPSL (2006)
151	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
152	#
153	#**************************************************************
154
155	#set -eu
156	#set -vx
157
158	date
159	echo
160	echo "#######################################"
161	echo "# ANOTHER GREAT SIMULATION #"
162	echo "#######################################"
163	echo
164
165	#D--------------------------------------------------------------------==
166	#D-
167	#D- Job to launch IGCM models
168	#D-
169	#D--------------------------------------------------------------------==
170	#D-
171
172	MODIPSL=::modipsl::
173	libIGCM=${MODIPSL}/libIGCM
174
175	#D--------------------------------------------------------------------==
176	#D- -1. PLACE FOR USER MODIFICATION
177	#D- - Job Verbosity
178	#D- - NbPeriodsPerJob
179	#D- - Experience type : DEB(ug), DEV(elopment), RUN
180	#D--------------------------------------------------------------------==
181
182	#D- Task type DO NOT CHANGE (computing, post-processing or checking)
183	TaskType=computing
184
185	#D- Increased verbosity (1, 2, 3)
186	Verbosity=3
187
188	#D- postProcessingStopLevel (0,1,2,3)
189	#D- 3 stop the main job if any post-processing went wrong (atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_*)
190	#D- 2 stop only if create_ts, create_se or pack_* failed (dont stop if atlas, monitoring or metrics failed)
191	#D- 1 stop only if pack_* failed (dont stop if atlas, monitoring, metrics, create_ts or create_se failed)
192	#D- 0 never stop the main job for post-processing that went wrong
193	postProcessingStopLevel=1
194
195	#D- Experience type : DEB(ug), DEV(elopment), RUN (default)
196	#D- DEB : set -vx mode + output files are NOT read only
197	#D- DEV : output files are NOT read only
198	#D- RUN : output files ARE read only
199	JobType=RUN
200
201	#D- Number of execution in one job
202	NbPeriodsPerJob=1
203
204	#D-
205	#D- --------------------------------------------------------------------------------------------------#
206	#D- ! OPTIONNAL FEATURES /!\ USE WITH CARE ! #
207	#D- --------------------------------------------------------------------------------------------------#
208
209
210	#D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation
211	#D- Default=true
212	#D-
213	DEBUG_debug=true
214
215	#D- Messaging : all activities and call stacks will be sent to ipsl servers
216	#D- If true will imply DEBUG_debug=true
217	#D- Default=false
218	#D-
219	BigBrother=false
220
221	#D- Set DEBUG_sys to false to disable output calls of function
222	#D- true when JobType=DEB # means DEB(ug)
223	#D-
224	#DEBUG_sys=false
225
226	#D- Define running directory
227	#D- Default=${TMPDIR} ie temporary batch directory
228	#D- Warning: the RUN_DIR_PATH directory might be deleted at the end of the simulation
229	#D- You need to make a simulation TEST to check the functionnality of your computer (automatic or manual removal)
230	#
231	#RUN_DIR_PATH=/scratch_tmp_disk_of_this_machine/RUN_DIR/
232
233	#D- Define submit directory
234	#D- Default= where you launch qsub (variable from scheduler)
235	#D-
236	#SUBMIT_DIR=$( pwd )
237
238	#D- Define input file root directory R_IN
239	#D- MESO-IPSL: /projsu/igcmg/IGCM
240	#D- TGCC: /ccc/work/cont003/igcmg/igcmg/IGCM
241	#D- IDRIS: /gpfswork/rech/psl/commun/IGCM
242	#D- LSCE/OBELIX: /home/orchideeshare/igcmg/IGCM
243	#D- Other default: /home_local/${LOGIN}/IGCM
244
245	#D- Change below to override the default
246	#R_IN=/u/rech/por/rpor111/DATA
247
248	#D- Turn in dry run mode ? (0,1,2,3,4)
249	#D- Default=0
250	#D-
251	DRYRUN=0
252	#D-# YOU HAVE TO COMPILE YOUR EXE FILES to USE DRYRUN MODE !
253	#D-# -------------------------------------------------------------------------------------
254	#D-# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
255	#D-# \| \| Cp/Exe/param/files \| \| \| \|
256	#D-# \| \| Chmod Qsub \| \| \| \|
257	#D-# -------------------------------------------------------------------------------------
258	#D-# \| 0 \| yes \| yes \| yes \| yes \|
259	#D-# -------------------------------------------------------------------------------------
260	#D-# \| 1 \| yes \| yes \| yes \| no \|
261	#D-# -------------------------------------------------------------------------------------
262	#D-# \| 2 \| yes \| yes \| no \| no \|
263	#D-# -------------------------------------------------------------------------------------
264	#D-# \| 3 \| yes \| no \| no \| no \|
265	#D-# -------------------------------------------------------------------------------------
266	#D-# \| 4 \| yes \| yes \| creation of RUN_DIR and Job_debug \|
267	#D-# -------------------------------------------------------------------------------------
268	#D-
269	# --------------------------------------------------------------------------------------------------#
270	#D- ! END OF OPTIONNAL FEATURES /!\ DO NOT MODIFY ANYTHING BELOW UNLESS YOU KNOW WHAT YOU ARE DOING #
271	# --------------------------------------------------------------------------------------------------#
272
273	#D-
274	#D--------------------------------------------------------------------==
275	#D- 0.0 SYSTEM ENVIRONMENT
276	#D- - Define variables for Number of processors
277	#D- - Define MPI variables
278	#D- - Define batch scheduler variables
279	#D- - Source IGCM Library
280	#D- - Get RESOLution in .resol file (temporary)
281	#D--------------------------------------------------------------------==
282
283	#---------------------------------------------------------------------==
284
285	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
286	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
287	. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
288	#-------
289	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
290	. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
291	. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
292	. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
293	#-------
294	( ${DEBUG_debug} ) && IGCM_debug_Check
295	( ${DEBUG_debug} ) && IGCM_card_Check
296	( ${DEBUG_debug} ) && IGCM_date_Check
297
298	#--------------------------------------------------------------------==
299
300	#-- Resolution FLAG for oasis input
301	#RESOL="ORCA2xLMD9671"
302	[ -f ${SUBMIT_DIR}/../.resol ] && RESOL=$(head -1 ${SUBMIT_DIR}/../.resol)
303	#-- Chemistrie FLAG to ease chemistries configurations management
304	#CHEM="AER"
305	[ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie)
306
307	#D-
308	#D--------------------------------------------------------------------==
309	#D- 0.1 COMMON ENVIRONMENT
310	#D- - Read libIGCM compatibility version in config.card
311	#D- - Read UserChoices section
312	#D- - Read Ensemble section
313	#D- - Read Post section
314	#D- - Define all netcdf output directories
315	#D--------------------------------------------------------------------==
316	IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card
317
318	if [ ! -r ${SUBMIT_DIR}/run.card ] ; then
319	#================================================#
320	# The file run.card doesn't exist #
321	#================================================#
322	FirstInitialize=true
323	#copy initial run.card
324	IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card
325	IGCM_debug_Print 2 "run.card copied from run.card.init"
326	else
327	FirstInitialize=false
328	IGCM_debug_Print 2 "run.card exists"
329	fi
330
331	# ------------------------------------------------------------------
332	# Activate BigBrother so as to supervise this simulation
333	# ------------------------------------------------------------------
334	IGCM_debug_BigBro_Initialize
335
336	#D-
337	#D--------------------------------------------------------------------==
338	#D- 1. INITIALIZE CONFIGURATION
339	#D- - Simulation configuration
340	#D- - Simulation parameters
341	#D- - Execution parameter
342	#D- - Define input files directory
343	#D- - Read or initialize CumulPeriod
344	#D- - run.card
345	#D--------------------------------------------------------------------==
346	IGCM_config_Initialize
347
348	# --------------------------------------------------------------------==
349	# Define, create and cd RUN_DIR
350	# --------------------------------------------------------------------==
351	RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$}
352	IGCM_sys_MkdirWork ${RUN_DIR}
353	IGCM_sys_Cd ${RUN_DIR}
354
355	# ------------------------------------------------------------------
356	# Test if all was right before proceeding further
357	# ------------------------------------------------------------------
358	IGCM_debug_Verif_Exit
359
360	#D-
361	#D---------------------------------------------------------------------==
362	#D- 2. INITIALIZE ALL COMPONENT OF THE CONFIGURATION
363	#D- - Define component executable
364	#D- - Define Write Frequency by component "1M" "1D" ...
365	#D- - Source ${comp}.driver
366	#D- - Define Storage Places by component
367	#D- - ${comp}_Initialize :
368	#D- - Patterns to sed
369	#D- - Variables from namelist
370	#D---------------------------------------------------------------------==
371	IGCM_comp_Initialize
372
373	#D-
374	#D---------------------------------------------------------------------==
375	#D- 3. PERFORM GENERAL VERIFICATION
376	#D- - Verify compatibility of period length, write frequencies, ...
377	#D- - Verify compatibility of rebuild choices and post-process choices
378	#D- - Will stop here if something is wrong
379	#D---------------------------------------------------------------------==
380	IGCM_config_Check
381
382	# ------------------------------------------------------------------
383	# Test if all was right before entering the period loop
384	# ------------------------------------------------------------------
385	IGCM_debug_Verif_Exit
386
387	#D-
388	#D---------------------------------------------------------------------==
389	#D- 4. ENTER THE DEEP EXECUTION LOOP
390	#D- ! FASTEN YOUR SEAT BELTS PLEASE. !
391	#D- ! WE WILL CROSS TURBULENCES. !
392	#D---------------------------------------------------------------------==
393
394	Period=1
395
396	PeriodContinue=false
397	if [ ${Period} -le ${NbPeriodsPerJob} ]; then
398	PeriodContinue=true
399	fi
400	while ( ${PeriodContinue} ) ; do
401
402	echo
403	echo "Starting iteration ${Period} / ${NbPeriodsPerJob}"
404
405	#D-
406	# ------------------------------------------------------------------
407	#D- 4.1 COMPUTE AND DEFINE DATE INFORMATION.
408	#D- - ${PeriodDateBegin}
409	#D- - ${PeriodDateEnd}
410	#D- - ${CumulPeriod}
411	#D- - ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd}
412	#D- - ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0
413	#D- - update run.card value
414	# ------------------------------------------------------------------
415	IGCM_config_PeriodStart
416
417	#D-
418	# ------------------------------------------------------------------
419	#D- 4.2 BEGIN COMPUTATION ONLY IF NEEDED
420	# ------------------------------------------------------------------
421	if [ ${SimulationLengthInDays} -gt ${ExperienceLengthInDays} ] ; then
422	IGCM_debug_Print 1 "break because '\${SimulationLengthInDays} -gt \${ExperienceLengthInDays}' : ${SimulationLengthInDays} -gt ${ExperienceLengthInDays}"
423	break ;
424	fi
425
426	#D-
427	# ------------------------------------------------------------------
428	#D- 4.3 CALL OPTIONNAL FUNCTION WITHIN DRIVER
429	#D- - to set special variables used in lists (Param, Init or Bc).
430	# ------------------------------------------------------------------
431	IGCM_comp_PeriodStart
432
433	#D-
434	# ------------------------------------------------------------------
435	#D- 4.4 GET PARAMETERS TEXT FILES UPDATED BY JOB
436	#D- - (.def, namelist ...)
437	#D- - READ AND USE BY GCM AT EACH EXECUTION.
438	# ------------------------------------------------------------------
439	IGCM_comp_GetInputParametersFiles
440
441	#D-
442	# ------------------------------------------------------------------
443	#D- 4.5 GET INITIAL STATE
444	#D- - (Etat0, carteveg,relief...)
445	#D- - NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1
446	#D- - AND ???_Restart=NO
447	#D- - READ AND USE BY GCM FOR ONLY ONE EXECUTION.
448	# ------------------------------------------------------------------
449	IGCM_comp_GetInputInitialStateFiles
450
451	#D-
452	# ------------------------------------------------------------------
453	#D- 4.6 GET BOUNDARIES CONDITIONS
454	#D- - (SST, WIND[X,Y,Z], LAI ...)
455	#D- - READ AND USE BY GCM AT EACH EXECUTION.
456	# ------------------------------------------------------------------
457	IGCM_comp_GetInputBoundaryFiles
458
459	#D-
460	# ------------------------------------------------------------------
461	#D- 4.7 GET SmoothFiles CONDITIONS
462	#D- - (SST, WIND[X,Y,Z], LAI ...)
463	#D- - READ AND USE BY GCM AT EACH EXECUTION
464	#D- - Do not change at each ${Period}
465	# ------------------------------------------------------------------
466	IGCM_comp_GetInputSmoothFiles
467
468	#D-
469	# ------------------------------------------------------------------
470	#D- 4.8 GET RESTART FILES
471	#D- - (restartphy.nc, orca_restart.nc ...)
472	#D- - READ AND USE BY GCM AT EACH EXECUTION.
473	#D-
474	#D- - IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART
475	#D- - ONLY IF CumulPeriod= (=> NUMERO) == 1
476	#D- - MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e)
477	#D-
478	#D- - IF CumulPeriod == 1
479	#D- - AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART
480	#D- - MUST BRING THIS RESTART IN ${RUN_DIR_PATH}
481	#D-
482	#D- - ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH}
483	# ------------------------------------------------------------------
484	IGCM_comp_GetInputRestartFiles
485
486	# ------------------------------------------------------------------
487	#D- 4.9 GET BINARY FILES
488	#D- - USED BY AT EACH EXECUTION.
489	#D- - CHECK BINARIES HAS BEEN COMPILED WITH THE SAME COMPILER
490	#D- - RELOAD THE APPROPRIATE ENVIRONMENT THE FIRST TIME IF NEEDED
491	# ------------------------------------------------------------------
492	IGCM_comp_GetInputBinaryFiles
493
494	# ------------------------------------------------------------------
495	# Test if all was right before Update
496	# ------------------------------------------------------------------
497	IGCM_debug_Verif_Exit
498
499	#D-
500	# ------------------------------------------------------------------
501	#D- 4.10 ACTIVATE RUNNING ENVIRONNEMENT VARIABLES
502	#D- - including module load associated to compiler & tools
503	#D- - .env_intel17.0.2_curie
504	#D- - .env_netcdf4.3.3.1_curie
505	# ------------------------------------------------------------------
506	IGCM_sys_activ_variables
507
508	#D-
509	# ------------------------------------------------------------------
510	#D- 4.11 UPDATE ParametersFiles
511	#D- - (.def, namelist ...)
512	#D- - with current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...)
513	# ------------------------------------------------------------------
514	IGCM_comp_Update
515
516	# ------------------------------------------------------------------
517	# Test if all was right before execution
518	# ------------------------------------------------------------------
519	IGCM_debug_Verif_Exit
520
521	#-Q- jeanzay # Workaround at Jean-Zay
522	#-Q- jeanzay source $I_MPI_ROOT/intel64/bin/mpivars.sh release_mt
523
524	#D-
525	#D---------------------------------------------------------------------==
526	#D- 5. EXECUTION
527	#D---------------------------------------------------------------------==
528
529	echo
530	echo "#######################################"
531	echo "# DIR BEFORE RUN EXECUTION #"
532	echo "#######################################"
533	echo
534	ls -lrt
535
536	echo "========================================================================"
537	if [ ${DRYRUN_DEBUG} = 4 ] ; then
538	IGCM_sys_create_run_dir
539	else
540	if [ ${DRYRUN} -le 1 ] ; then
541	REAL_DATE_INIT=$( date )
542	echo > ${Exe_Output}
543	echo "#######################################" >> ${Exe_Output}
544	echo "EXECUTION of : ${EXECUTION}"
545	echo "EXECUTION of : ${EXECUTION}" >> ${Exe_Output}
546	echo >> ${Exe_Output}
547	typeset RET
548	RUN_DATE_BEGIN=$( date '+%Y-%m-%dT%H:%M:%S' )
549	${EXECUTION} >> ${Exe_Output} 2>&1
550	RET=$?
551	RUN_DATE_END=$( date '+%Y-%m-%dT%H:%M:%S' )
552	if [ ${RET} -gt 0 ] ; then
553	echo "Return code of executable :" ${RET}
554	IGCM_debug_Exit "EXECUTABLE"
555	IGCM_sys_Mkdir ${SUBMIT_DIR}/Debug
556	IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/Debug/${PREFIX}_${Exe_Output}_error
557
558	echo ""
559	echo "to debug your experience, you can analyze the various files (.err, .out, and parameters files) available in the Debug/ directory "
560	echo "these files are managed by the list [OutputText] defined in componant's card (COMP/*.card)"
561	echo ""
562
563	ExecutionFail=true
564	fi
565	echo >> ${Exe_Output}
566	echo "#######################################" >> ${Exe_Output}
567	echo "libIGCM RunDateBegin=${RUN_DATE_BEGIN}" >> ${Exe_Output}
568	echo "libIGCM RunDateEnd=${RUN_DATE_END}" >> ${Exe_Output}
569	echo >> ${Exe_Output}
570	else
571	echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN
572	echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN > ${Exe_Output}
573	if ( $DEBUG_debug ) ; then
574	echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack
575	fi
576	fi
577	fi
578	echo "========================================================================"
579
580	echo
581	echo "#######################################"
582	echo "# DIR AFTER RUN EXECUTION #"
583	echo "#######################################"
584	echo
585	ls -lrt
586
587	#D-
588	#D---------------------------------------------------------------------==
589	#D- 6. POST EXECUTION OPERATIONS
590	#D---------------------------------------------------------------------==
591
592	#D-
593	# ------------------------------------------------------------------
594	#D- 6.1. DESACTIVATE RUNNING ENVIRONNEMENT VARIABLES
595	# ------------------------------------------------------------------
596	IGCM_sys_desactiv_variables
597
598	#D-
599	# ------------------------------------------------------------------
600	#D- 6.2. SAVE OUTPUTS
601	#D- - On archive/storage machine
602	#D- - netcdf outputs, restarts and text files of models
603	# ------------------------------------------------------------------
604	IGCM_comp_Finalize
605
606	# ------------------------------------------------------------------
607	# Test if all was right after Finalize
608	# ------------------------------------------------------------------
609	IGCM_debug_Verif_Exit
610
611	#D-
612	# ------------------------------------------------------------------
613	#D- 6.3. CONFIGURE POST-PROCESSING
614	#D- - asynchronous post-treatment (Level 0) when necessary (rebuild/pack)
615	#D- - classic post-treatment (Level 1) when necessary (TimeSeries/Seasonal)
616	# ------------------------------------------------------------------
617	IGCM_post_Configure
618
619	#D-
620	# ------------------------------------------------------------------
621	#D- 6.4. SUBMIT POST-PROCESSING
622	#D- - remote rebuild or/and post-treatment process if necessary
623	# ------------------------------------------------------------------
624	IGCM_post_Submit
625
626	#D-
627	# ------------------------------------------------------------------
628	#D- 6.5. FINALYZE CURRENT LOOP AND PREPARE NEXT ONE
629	#D- - Manage executable size to save only different binary
630	#D- - Write in run.card user, system and elapse time
631	#D- - Check that everything went well ! No ? then we stop.
632	#D- - Determine next computed period
633	# ------------------------------------------------------------------
634	IGCM_config_PeriodEnd
635
636	echo "Ending iteration ${Period}"
637	(( Period = Period + 1 ))
638
639	# End loop if date end is reached
640	if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then
641	break ;
642	fi
643
644	PeriodContinue=false
645	if [ ${Period} -le ${NbPeriodsPerJob} ]; then
646	PeriodContinue=true
647	fi
648	done
649
650	#D-
651	#D---------------------------------------------------------------------==
652	#D- 7. SUBMIT NEXT JOB OR SEND MAIL IF SIMULATION IS OVER.
653	#D---------------------------------------------------------------------==
654	IGCM_config_Finalize
655
656	date

Note: See TracBrowser for help on using the repository browser.

Download in other formats: