1 | #!/bin/ksh |
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2 | |
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3 | #************************************************************** |
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4 | # Author: Sébastien Denvil |
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5 | # Contact: sebastien.denvil.@ipsl.jussieu.fr |
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6 | # $Date: 2008/03/03 14:55:23 $ |
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7 | # $Name: libIGCM_v1 $ |
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8 | # $Revision: 1.38 $ |
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9 | # IPSL (2006) |
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10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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11 | # History: |
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12 | # Modification: |
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13 | # |
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14 | #************************************************************** |
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15 | |
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16 | #========================================================= |
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17 | # The documentation of this file can be automatically generated |
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18 | # if you use the prefix #D- for comments to be extracted. |
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19 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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20 | #========================================================= |
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21 | |
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22 | #D-#================================================= |
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23 | #D-LibIGCM_sys for Brodie |
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24 | #D-#================================================= |
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25 | #D- |
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26 | #D- This ksh library if a layer under some usefull |
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27 | #D-environment variables and shell commands. |
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28 | #D-All those definitions depend on host particularities. |
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29 | #D-It manages a stack mechanism and test validity of operations. |
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30 | #D-All function described bellow must be prefixed by IGCM_sys. |
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31 | |
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32 | #==================================================== |
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33 | # libIGCM_sys PARAMETERS |
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34 | #==================================================== |
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35 | |
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36 | #==================================================== |
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37 | # set DEBUG_sys to true to output calls of function |
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38 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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39 | |
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40 | #==================================================== |
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41 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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42 | typeset -r DRYRUN=${DRYRUN:=0} |
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43 | |
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44 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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45 | # ------------------------------------------------------------------------------------- |
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46 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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47 | # | | Cp/Exe param files | | Chmod | | |
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48 | # | | Qsub | | | | |
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49 | # ------------------------------------------------------------------------------------- |
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50 | # | 0 | yes | yes | yes | yes | |
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51 | # ------------------------------------------------------------------------------------- |
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52 | # | 1 | yes | yes | yes | no | |
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53 | # ------------------------------------------------------------------------------------- |
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54 | # | 2 | yes | yes | no | no | |
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55 | # ------------------------------------------------------------------------------------- |
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56 | # | 3 | yes | no | no | no | |
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57 | # ------------------------------------------------------------------------------------- |
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58 | |
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59 | #===================================================== |
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60 | # Global Variables : |
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61 | #===================================================== |
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62 | # Language : "fr" or "en" |
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63 | typeset -r MYLANG="fr" |
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64 | |
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65 | #===================================================== |
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66 | # Host and user names |
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67 | # $hostname ou hostname |
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68 | typeset -r HOST=$( hostname ) |
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69 | # $username ou whoami |
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70 | typeset -r LOGIN=$( whoami ) |
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71 | |
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72 | #D- |
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73 | #D-#================================================== |
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74 | #D-Program used in libIGCM |
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75 | #D-#================================================== |
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76 | |
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77 | # rsync with path |
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78 | typeset -r RSYNC=/home/rech/ces/rces452/RSYNC_SX8/bin/rsync |
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79 | # RSYNC_opt args to "local rsync" |
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80 | typeset -r RSYNC_FRONT="rsh rhodes /usr/bin/rsync " |
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81 | # RSYNC_opt args to rsync |
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82 | typeset -r RSYNC_opt="-Lt -v" |
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83 | # RSYNC_opt args to "remote rsync" |
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84 | # ie storage filesystem |
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85 | typeset -r RHOST=gaya.idris.fr |
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86 | typeset -r REMOTE_RSYNC=/u/rech/ces/rces452/RSYNC/bin/rsync |
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87 | |
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88 | #==================================================== |
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89 | # Host specific DIRECTORIES |
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90 | #==================================================== |
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91 | |
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92 | #==================================================== |
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93 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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94 | typeset -r R_EXE="${MODIPSL}/bin" |
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95 | |
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96 | #==================================================== |
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97 | #- SUBMIT_DIR : submission dir |
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98 | typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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99 | |
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100 | #==================================================== |
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101 | #- ARCHIVE |
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102 | typeset -r ARCHIVE=$( rsh gaya -n env | grep PWD | awk "-F=" '{print $2}' ) |
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103 | |
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104 | #==================================================== |
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105 | #- Mirror libIGCM from brodie to rhodes |
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106 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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107 | |
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108 | #==================================================== |
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109 | #- IN |
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110 | typeset -r R_IN=${R_IN:=/u/rech/psl/rpsl035/IGCM} |
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111 | |
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112 | #==================================================== |
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113 | #- OUT |
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114 | typeset -r R_OUT=${ARCHIVE}/IGCM_OUT |
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115 | |
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116 | #==================================================== |
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117 | #- OUT_POST |
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118 | typeset -r R_OUT_POST=$( rsh rhodes -n echo $WORKDIR | awk "-F=" "{print $2}" )/IGCM_OUT |
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119 | |
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120 | #==================================================== |
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121 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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122 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${TMPDIR}} |
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123 | |
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124 | #==================================================== |
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125 | #- HOST_MPIRUN_COMMAND |
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126 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="mpirun"} |
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127 | |
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128 | #D-#================================================== |
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129 | #D-function IGCM_sys_RshArchive |
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130 | #D-* Purpose: Master rsh command |
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131 | #D-* Examples: |
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132 | #D- |
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133 | function IGCM_sys_RshArchive { |
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134 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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135 | if ( $DEBUG_sys ) ; then |
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136 | echo "IGCM_sys_RshArchive :" $@ |
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137 | fi |
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138 | rsh gaya exec /bin/ksh ${@} |
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139 | if [ $? -gt 0 ] ; then |
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140 | echo "IGCM_sys_RshArchive : erreur." |
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141 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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142 | fi |
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143 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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144 | } |
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145 | |
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146 | #D-#================================================== |
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147 | #D-function IGCM_sys_RshPost |
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148 | #D-* Purpose: Master rsh command |
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149 | #D-* Examples: |
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150 | #D- |
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151 | function IGCM_sys_RshPost { |
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152 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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153 | if ( $DEBUG_sys ) ; then |
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154 | echo "IGCM_sys_RshPost :" $@ |
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155 | fi |
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156 | rsh rhodes exec /bin/ksh ${@} |
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157 | if [ $? -gt 0 ] ; then |
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158 | echo "IGCM_sys_RshPost : erreur." |
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159 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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160 | fi |
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161 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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162 | } |
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163 | |
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164 | #D-#================================================== |
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165 | #D-function IGCM_sys_Mkdir |
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166 | #D-* Purpose: Master locale mkdir command |
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167 | #D-* Examples: |
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168 | #D- |
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169 | function IGCM_sys_Mkdir { |
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170 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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171 | if ( $DEBUG_sys ) ; then |
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172 | echo "IGCM_sys_Mkdir :" $@ |
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173 | fi |
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174 | if [ ! -d ${1} ]; then |
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175 | \mkdir -p $1 |
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176 | if [ $? -gt 0 ] ; then |
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177 | echo "IGCM_sys_Mkdir : erreur." |
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178 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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179 | fi |
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180 | fi |
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181 | # vérification : |
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182 | if [ ! -d ${1} ] ; then |
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183 | echo "IGCM_sys_Mkdir : erreur." |
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184 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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185 | fi |
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186 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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187 | } |
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188 | |
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189 | #D-#================================================== |
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190 | #D-function IGCM_sys_MkdirArchive |
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191 | #D-* Purpose: Mkdir on Archive |
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192 | #D-* Examples: |
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193 | #D- |
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194 | function IGCM_sys_MkdirArchive { |
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195 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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196 | if ( $DEBUG_sys ) ; then |
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197 | echo "IGCM_sys_MkdirArchive :" $@ |
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198 | fi |
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199 | #- creation de repertoire sur le serveur fichier |
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200 | rsh gaya -n mkdir -p $1 |
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201 | |
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202 | if [ $? -gt 0 ] ; then |
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203 | echo "IGCM_sys_MkdirArchive : erreur." |
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204 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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205 | fi |
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206 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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207 | } |
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208 | |
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209 | #D-#================================================== |
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210 | #D-function IGCM_sys_MkdirWork |
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211 | #D-* Purpose: Mkdir on Work |
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212 | #D-* Examples: |
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213 | #D- |
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214 | function IGCM_sys_MkdirWork { |
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215 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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216 | if ( $DEBUG_sys ) ; then |
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217 | echo "IGCM_sys_MkdirWork :" $@ |
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218 | fi |
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219 | #- creation de repertoire sur le serveur fichier |
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220 | if [ ! -d ${1} ]; then |
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221 | \mkdir -p $1 |
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222 | if [ $? -gt 0 ] ; then |
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223 | echo "IGCM_sys_MkdirWork : erreur." |
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224 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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225 | fi |
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226 | fi |
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227 | # vérification ?? : |
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228 | if [ ! -d ${1} ] ; then |
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229 | echo "IGCM_sys_MkdirWork : erreur." |
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230 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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231 | fi |
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232 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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233 | } |
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234 | #IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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235 | #echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." |
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236 | |
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237 | #D-#================================================== |
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238 | #D-function IGCM_sys_Cd |
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239 | #D-* Purpose: master cd command |
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240 | #D-* Examples: |
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241 | #D- |
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242 | function IGCM_sys_Cd { |
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243 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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244 | if ( $DEBUG_sys ) ; then |
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245 | echo "IGCM_sys_Cd :" $@ |
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246 | fi |
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247 | \cd $1 |
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248 | if [ $? -gt 0 ] ; then |
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249 | echo "IGCM_sys_Cd : erreur." |
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250 | IGCM_debug_Exit "IGCM_sys_Cd" |
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251 | fi |
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252 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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253 | } |
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254 | |
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255 | #D-#================================================== |
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256 | #D-function IGCM_sys_Chmod |
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257 | #D-* Purpose: Chmod |
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258 | #D-* Examples: |
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259 | #D- |
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260 | function IGCM_sys_Chmod { |
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261 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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262 | if ( $DEBUG_sys ) ; then |
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263 | echo "IGCM_sys_Chmod :" $@ |
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264 | fi |
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265 | if [ $DRYRUN -le 1 ]; then |
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266 | \chmod $@ |
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267 | if [ $? -gt 0 ] ; then |
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268 | echo "IGCM_sys_Chmod : erreur." |
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269 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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270 | fi |
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271 | else |
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272 | echo "DRYRUN mode = " $DRYRUN >> stack |
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273 | fi |
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274 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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275 | } |
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276 | |
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277 | #D-#================================================== |
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278 | #D-function IGCM_sys_FileSize |
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279 | #D-* Purpose: Filesize |
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280 | #D-* Examples: |
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281 | #D- |
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282 | function IGCM_sys_FileSize { |
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283 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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284 | |
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285 | typeset sizeF |
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286 | set +A sizeF -- $( ls -la ${1} ) |
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287 | if [ $? -gt 0 ] ; then |
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288 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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289 | fi |
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290 | eval ${2}=${sizeF[4]} |
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291 | |
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292 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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293 | } |
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294 | |
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295 | #D-#================================================== |
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296 | #D-function IGCM_sys_TestDir |
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297 | #D-* Purpose: Test Directory that must exists |
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298 | #D-* Examples: |
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299 | #D- |
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300 | function IGCM_sys_TestDir { |
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301 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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302 | if ( $DEBUG_sys ) ; then |
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303 | echo "IGCM_sys_TestDir :" $@ |
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304 | fi |
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305 | if [ ! -d ${1} ]; then |
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306 | echo "IGCM_sys_TestDir : Directory $1 does not exist." |
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307 | IGCM_debug_Exit "IGCM_sys_TestDir" |
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308 | fi |
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309 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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310 | } |
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311 | |
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312 | #D-#================================================== |
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313 | #D-function IGCM_sys_TestDirArchive |
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314 | #D-* Purpose: Test Directory that must exists on Archive |
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315 | #D-* Examples: |
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316 | #D- |
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317 | function IGCM_sys_TestDirArchive { |
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318 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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319 | if ( $DEBUG_sys ) ; then |
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320 | echo "IGCM_sys_TestDirArchive :" $@ |
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321 | fi |
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322 | TEST=$( rsh gaya -n "[ -d $1 ] && echo 1 || echo 0" ) |
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323 | if [ ${TEST} -ne 1 ] ; then |
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324 | echo "IGCM_sys_TestDirArchive : Directory $1 does not exist on ${ARCHIVE}." |
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325 | IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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326 | fi |
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327 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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328 | } |
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329 | |
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330 | #D-#================================================== |
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331 | #D-function IGCM_sys_TestFileArchive |
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332 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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333 | #D-* Examples: |
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334 | #D- |
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335 | function IGCM_sys_TestFileArchive { |
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336 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
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337 | if ( $DEBUG_sys ) ; then |
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338 | echo "IGCM_sys_TestFileArchive :" $@ |
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339 | fi |
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340 | typeset RET |
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341 | |
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342 | mfls ${1} | grep ${1} > /dev/null 2>&1 |
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343 | RET=$? |
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344 | if [ ${RET} -gt 0 ]; then |
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345 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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346 | return 1 |
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347 | else |
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348 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
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349 | return 0 |
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350 | fi |
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351 | } |
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352 | |
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353 | #D-#================================================== |
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354 | #D-function IGCM_sys_Tree |
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355 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
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356 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
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357 | #D- |
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358 | function IGCM_sys_Tree { |
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359 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
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360 | if ( $DEBUG_sys ) ; then |
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361 | echo "IGCM_sys_Tree :" $@ |
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362 | fi |
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363 | |
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364 | \mfls -r $@ |
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365 | |
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366 | IGCM_debug_PopStack "IGCM_sys_Tree" |
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367 | } |
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368 | |
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369 | #D-#================================================== |
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370 | #D-function IGCM_sys_Tar |
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371 | #D-* Purpose: master un-tar command |
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372 | #D-* Examples: |
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373 | #D- |
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374 | function IGCM_sys_Tar { |
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375 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
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376 | if ( $DEBUG_sys ) ; then |
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377 | echo "IGCM_sys_Tar :" $@ |
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378 | fi |
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379 | \tar xvf $1 |
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380 | if [ $? -gt 0 ] ; then |
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381 | echo "IGCM_sys_Tar : erreur." |
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382 | IGCM_debug_Exit "IGCM_sys_Tar" |
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383 | fi |
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384 | IGCM_debug_PopStack "IGCM_sys_Tar" |
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385 | } |
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386 | |
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387 | #D-#================================================== |
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388 | #D-function IGCM_sys_UnTar |
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389 | #D-* Purpose: master un-tar command |
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390 | #D-* Examples: |
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391 | #D- |
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392 | function IGCM_sys_UnTar { |
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393 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
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394 | if ( $DEBUG_sys ) ; then |
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395 | echo "IGCM_sys_UnTar :" $@ |
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396 | fi |
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397 | \tar xvf $1 |
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398 | if [ $? -gt 0 ] ; then |
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399 | echo "IGCM_sys_UnTar : erreur." |
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400 | IGCM_debug_Exit "IGCM_sys_UnTar" |
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401 | fi |
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402 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
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403 | } |
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404 | |
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405 | #D-#================================================== |
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406 | #D-function IGCM_sys_Qsub |
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407 | #D-* Purpose: Qsub new job |
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408 | #D-* Examples: |
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409 | #D- |
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410 | function IGCM_sys_Qsub { |
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411 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
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412 | if ( $DEBUG_sys ) ; then |
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413 | echo "IGCM_sys_Qsub :" $@ |
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414 | fi |
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415 | /usr/bin/nqsII/qsub -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
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416 | if [ $? -gt 0 ] ; then |
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417 | echo "IGCM_sys_Qsub : erreur -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} $@." |
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418 | IGCM_debug_Exit "IGCM_sys_Qsub" |
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419 | fi |
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420 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
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421 | } |
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422 | |
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423 | #D-#================================================== |
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424 | #D-function IGCM_sys_QsubPost |
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425 | #D-* Purpose: Qsub new job on scalaire |
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426 | #D-* Examples: |
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427 | #D- |
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428 | function IGCM_sys_QsubPost { |
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429 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
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430 | if ( $DEBUG_sys ) ; then |
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431 | echo "IGCM_sys_QsubPost :" $@ |
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432 | fi |
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433 | /usr/bin/nqsII/qsub -q scalaire -o ${POST_DIR}/$1.${PeriodDateEnd}.out ${libIGCM_POST}/$1.job -v ${listVarEnv} |
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434 | if [ $? -gt 0 ] ; then |
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435 | echo "IGCM_sys_QsubPost : erreur " $@ |
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436 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
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437 | fi |
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438 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
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439 | } |
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440 | |
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441 | #D-************************* |
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442 | #D- File transfer functions |
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443 | #D-************************* |
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444 | #D- |
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445 | |
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446 | #D-#================================================== |
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447 | #D-function IGCM_sys_Rsync_out |
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448 | #D-* Purpose: treat return val of rsync |
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449 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
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450 | #D- Error values and explanations can depend on your system version. |
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451 | function IGCM_sys_Rsync_out { |
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452 | RET=$1 |
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453 | if [ ! $RET ] ; then |
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454 | echo "rsync error !" |
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455 | fi |
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456 | |
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457 | if [ $MYLANG = "fr" ]; then |
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458 | case $RET in |
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459 | 0) return ;; |
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460 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
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461 | echo "Erreur de syntaxe ou d'utilisation." |
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462 | return;; |
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463 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
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464 | echo "Incompatibilité de protocole." |
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465 | return;; |
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466 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
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467 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
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468 | echo "répertoires" |
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469 | return;; |
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470 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
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471 | echo "Action demandée non supportée : une tentative de manipulation de" |
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472 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
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473 | echo "été faite ; ou une option qui est supportée par le client mais" |
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474 | echo "pas par le serveur a été spécifiée." |
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475 | return;; |
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476 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
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477 | echo "Erreur dans le socket d'entrée sortie" |
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478 | return;; |
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479 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
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480 | echo "Erreur d'entrée sortie fichier" |
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481 | return;; |
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482 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
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483 | echo "Erreur dans flux de donnée du protocole rsync" |
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484 | return;; |
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485 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
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486 | echo "Erreur avec les diagnostics du programme" |
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487 | return;; |
---|
488 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
489 | echo "Erreur dans le code IPC" |
---|
490 | return;; |
---|
491 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
492 | echo "SIGUSR1 ou SIGINT reçu" |
---|
493 | return;; |
---|
494 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
495 | echo "Une erreur retournée par waitpid()" |
---|
496 | return;; |
---|
497 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
498 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
499 | return;; |
---|
500 | 23) echo "" |
---|
501 | echo "Erreur fichier inexistant" |
---|
502 | return;; |
---|
503 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
504 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
505 | return;; |
---|
506 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET |
---|
507 | return;; |
---|
508 | esac |
---|
509 | elif [ $MYLANG = "en" ] ; then |
---|
510 | case $RET in |
---|
511 | 0) return;; |
---|
512 | 1) echo "rsync error : Syntax or usage error " |
---|
513 | return;; |
---|
514 | 2) echo "rsync error : Protocol incompatibility " |
---|
515 | return;; |
---|
516 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
517 | return;; |
---|
518 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
519 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
520 | echo "them; or an option was specified that is supported by the client and" |
---|
521 | echo "not by the server." |
---|
522 | return;; |
---|
523 | 5) echo "rsync error : Error starting client-server protocol" |
---|
524 | return;; |
---|
525 | 10) echo "rsync error : Error in socket I/O " |
---|
526 | return;; |
---|
527 | 11) echo "rsync error : Error in file I/O " |
---|
528 | return;; |
---|
529 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
530 | return;; |
---|
531 | 13) echo "rsync error : Errors with program diagnostics " |
---|
532 | return;; |
---|
533 | 14) echo "rsync error : Error in IPC code " |
---|
534 | return;; |
---|
535 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
536 | return;; |
---|
537 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
538 | return;; |
---|
539 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
540 | return;; |
---|
541 | 23) echo "rsync error : Partial transfer due to error" |
---|
542 | return;; |
---|
543 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
544 | return;; |
---|
545 | 30) echo "rsync error : Timeout in data send/receive " |
---|
546 | return;; |
---|
547 | *) echo "rsync error : return code of rsync unknown :" $RET |
---|
548 | return;; |
---|
549 | esac |
---|
550 | else |
---|
551 | echo "unknown language $MYLANG." |
---|
552 | return |
---|
553 | fi |
---|
554 | } |
---|
555 | |
---|
556 | |
---|
557 | #D-#================================================== |
---|
558 | #D-function IGCM_sys_Miror_libIGCM |
---|
559 | #D-* Purpose: Mirror libIGCM PATH and lib to rhodes |
---|
560 | #D-* Examples: |
---|
561 | #D- |
---|
562 | function IGCM_sys_Mirror_libIGCM { |
---|
563 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
564 | if ( $DEBUG_sys ) ; then |
---|
565 | echo "IGCM_sys_Mirror_libIGCM" |
---|
566 | fi |
---|
567 | |
---|
568 | typeset RET DEST |
---|
569 | |
---|
570 | IGCM_sys_RshPost <<-EOF |
---|
571 | mkdir -p ${PATHlibIGCM} |
---|
572 | EOF |
---|
573 | rsh rhodes -n hostname > /dev/null 2>&1 |
---|
574 | RET=$? |
---|
575 | if [ $RET -eq 0 ] ; then |
---|
576 | echo rcp -r ${libIGCM} rhodes:${HOME}/${PATHlibIGCM} > out_rsync 2>&1 |
---|
577 | rcp -r ${libIGCM} rhodes:${HOME}/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
578 | RET=$? |
---|
579 | |
---|
580 | if [ ${RET} -gt 0 ] ; then |
---|
581 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on rhodes." |
---|
582 | cat out_rsync |
---|
583 | fi |
---|
584 | else |
---|
585 | echo "No POST-TREATMENT avaible because rhodes is down." |
---|
586 | fi |
---|
587 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
588 | } |
---|
589 | |
---|
590 | #==================================================== |
---|
591 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
592 | PATHlibIGCM=$( echo ${libIGCM} | awk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
---|
593 | if ( $MirrorlibIGCM ) ; then |
---|
594 | IGCM_sys_Mirror_libIGCM |
---|
595 | fi |
---|
596 | |
---|
597 | #==================================================== |
---|
598 | #- libIGCM_POST |
---|
599 | typeset -r libIGCM_POST=${HOME}/${PATHlibIGCM}/libIGCM |
---|
600 | |
---|
601 | #D-#================================================== |
---|
602 | #D-function IGCM_sys_Cp |
---|
603 | #D-* Purpose: generic cp |
---|
604 | #D-* Examples: |
---|
605 | #D- |
---|
606 | function IGCM_sys_Cp { |
---|
607 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
608 | if ( $DEBUG_sys ) ; then |
---|
609 | echo "IGCM_sys_Cp :" $@ |
---|
610 | fi |
---|
611 | |
---|
612 | typeset RET |
---|
613 | |
---|
614 | echo cp $@ > out_rsync 2>&1 |
---|
615 | \cp $@ >> out_rsync 2>&1 |
---|
616 | RET=$? |
---|
617 | |
---|
618 | if [ ${RET} -gt 0 ] ; then |
---|
619 | echo "IGCM_sys_Cp : error." |
---|
620 | cat out_rsync |
---|
621 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
622 | fi |
---|
623 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
624 | } |
---|
625 | |
---|
626 | #D-#================================================== |
---|
627 | #D-function IGCM_sys_Mv |
---|
628 | #D-* Purpose: generic move |
---|
629 | #D-* Examples: |
---|
630 | #D- |
---|
631 | function IGCM_sys_Mv { |
---|
632 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
633 | if ( $DEBUG_sys ) ; then |
---|
634 | echo "IGCM_sys_Mv :" $@ |
---|
635 | fi |
---|
636 | |
---|
637 | typeset RET |
---|
638 | |
---|
639 | echo mv $@ > out_rsync 2>&1 |
---|
640 | \mv $@ >> out_rsync 2>&1 |
---|
641 | RET=$? |
---|
642 | |
---|
643 | if [ ${RET} -gt 0 ] ; then |
---|
644 | echo "IGCM_sys_Mv : error in mv." |
---|
645 | cat out_rsync |
---|
646 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
647 | fi |
---|
648 | |
---|
649 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
650 | } |
---|
651 | |
---|
652 | #D-#================================================== |
---|
653 | #D-function IGCM_sys_Put_Rest |
---|
654 | #D-* Purpose: Put computied restarts on $(ARCHIVE). |
---|
655 | #D- File and target directory must exist. |
---|
656 | #D-* Examples: |
---|
657 | #D- |
---|
658 | function IGCM_sys_Put_Rest { |
---|
659 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
660 | if ( $DEBUG_sys ) ; then |
---|
661 | echo "IGCM_sys_Put_Rest :" $@ |
---|
662 | fi |
---|
663 | if [ $DRYRUN = 0 ]; then |
---|
664 | if [ ! -f ${1} ] ; then |
---|
665 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
666 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
667 | fi |
---|
668 | |
---|
669 | typeset RET |
---|
670 | # |
---|
671 | IGCM_sys_Chmod 444 ${1} |
---|
672 | # |
---|
673 | # Only if we use rsync |
---|
674 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
675 | # |
---|
676 | #USUAL WAY |
---|
677 | mfput $1 $2 > out_rsync 2>&1 |
---|
678 | RET=$? |
---|
679 | |
---|
680 | # #RSYNC WITH NETWORK RSH CALL |
---|
681 | # echo ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
682 | # ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
683 | |
---|
684 | # #RSYNC WITH NFS USE |
---|
685 | # echo ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
686 | # ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
687 | |
---|
688 | # RET=$? |
---|
689 | # IGCM_sys_Rsync_out $RET |
---|
690 | |
---|
691 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
692 | # (( RET=RET+$? )) |
---|
693 | |
---|
694 | if [ ${RET} -gt 0 ] ; then |
---|
695 | echo "IGCM_sys_Put_Rest : error." |
---|
696 | cat out_rsync |
---|
697 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
698 | fi |
---|
699 | else |
---|
700 | echo "DRYRUN mode = " $DRYRUN >> stack |
---|
701 | fi |
---|
702 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
703 | } |
---|
704 | |
---|
705 | #D-#================================================== |
---|
706 | #D-function IGCM_sys_Put_Out |
---|
707 | #D-* Purpose: Copy a file on $(ARCHIVE) after have chmod it in readonly |
---|
708 | #D-* Examples: |
---|
709 | #D- |
---|
710 | function IGCM_sys_Put_Out { |
---|
711 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
712 | if ( $DEBUG_sys ) ; then |
---|
713 | echo "IGCM_sys_Put_Out :" $@ |
---|
714 | fi |
---|
715 | if [ $DRYRUN = 0 ]; then |
---|
716 | if [ ! -f ${1} ] ; then |
---|
717 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
718 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
719 | return 1 |
---|
720 | fi |
---|
721 | |
---|
722 | typeset RET |
---|
723 | # |
---|
724 | IGCM_sys_Chmod 444 ${1} |
---|
725 | # |
---|
726 | # Only if we use rsync |
---|
727 | #IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
728 | # |
---|
729 | #USUAL WAY |
---|
730 | mfput $1 $2 > out_rsync 2>&1 |
---|
731 | RET=$? |
---|
732 | |
---|
733 | # #RSYNC WITH NETWORK RSH CALL |
---|
734 | # echo ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} > out_rsync 2>&1 |
---|
735 | # ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RUN_DIR}/$1 ${RHOST}:${2} >> out_rsync 2>&1 |
---|
736 | |
---|
737 | # #RSYNC WITH NFS USE |
---|
738 | # echo ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
739 | # ${RSYNC_FRONT} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
740 | |
---|
741 | # RET=$? |
---|
742 | # IGCM_sys_Rsync_out $RET |
---|
743 | |
---|
744 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
745 | # (( RET=RET+$? )) |
---|
746 | |
---|
747 | if [ ${RET} -gt 0 ] ; then |
---|
748 | echo "IGCM_sys_Put_Out : error." |
---|
749 | cat out_rsync |
---|
750 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
751 | fi |
---|
752 | else |
---|
753 | echo "DRYRUN mode = " $DRYRUN >> stack |
---|
754 | fi |
---|
755 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
756 | return 0 |
---|
757 | } |
---|
758 | |
---|
759 | #D-#================================================== |
---|
760 | #D-function IGCM_sys_Get |
---|
761 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
762 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
763 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
764 | function IGCM_sys_Get { |
---|
765 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
766 | |
---|
767 | typeset DEST RET dm_liste ifile target |
---|
768 | |
---|
769 | if ( $DEBUG_sys ) ; then |
---|
770 | echo "IGCM_sys_Get :" $@ |
---|
771 | fi |
---|
772 | if [ $DRYRUN -le 2 ]; then |
---|
773 | if [ X${1} = X'/l' ] ; then |
---|
774 | # test if the first file is present in the old computation : |
---|
775 | eval set +A dm_liste \${${2}} |
---|
776 | else |
---|
777 | dm_liste=${1} |
---|
778 | fi |
---|
779 | eval DEST=\${${#}} |
---|
780 | |
---|
781 | # test if the (first) file is present in the old computation : |
---|
782 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
783 | RET=$? |
---|
784 | if [ ${RET} -gt 0 ] ; then |
---|
785 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
786 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
787 | return |
---|
788 | fi |
---|
789 | |
---|
790 | # SD : dm_liste is not suited for computing job |
---|
791 | # because we change filename during transfert |
---|
792 | # dm_liste is better suited for post-treatment |
---|
793 | #dm_liste=" " |
---|
794 | #(( ifile=1 )) |
---|
795 | #while [ $ifile -lt $# ] ; do |
---|
796 | # dm_liste=$( eval echo ${dm_liste} " "\${${ifile}} ) |
---|
797 | # (( ifile = ifile + 1 )) |
---|
798 | #done |
---|
799 | #DEST=$( eval echo \${${#}} ) |
---|
800 | |
---|
801 | #USUAL WAY |
---|
802 | mfget ${dm_liste[*]} ${DEST} > out_rsync 2>&1 |
---|
803 | #mfget $1 $2 > out_rsync 2>&1 |
---|
804 | RET=$? |
---|
805 | |
---|
806 | # #RSYNC WITH NETWORK RSH CALL |
---|
807 | # echo ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
808 | # ${RSYNC_FRONT} ${RSYNC_opt} --rsync-path=${REMOTE_RSYNC} -e rsh ${RHOST}:"${dm_liste}" ${RHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
809 | |
---|
810 | # #RSYNC WITH NFS USE |
---|
811 | # echo ${RSYNC_FRONT} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
812 | # ${RSYNC_FRONT} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
813 | |
---|
814 | # RET=$? |
---|
815 | # IGCM_sys_Rsync_out $RET |
---|
816 | |
---|
817 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
818 | # (( RET=RET+$? )) |
---|
819 | |
---|
820 | if [ ${RET} -gt 0 ] ; then |
---|
821 | echo "IGCM_sys_Get : copy error." |
---|
822 | cat out_rsync |
---|
823 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
824 | fi |
---|
825 | else |
---|
826 | echo "DRYRUN mode = " $DRYRUN >> stack |
---|
827 | fi |
---|
828 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
829 | } |
---|
830 | |
---|
831 | ############################################################## A REVOIR !! |
---|
832 | |
---|
833 | #D-#================================================== |
---|
834 | #D-function IGCM_sys_Rapatrie |
---|
835 | #D-* Purpose: Rapatrie |
---|
836 | #D-* Examples: |
---|
837 | #D- |
---|
838 | function IGCM_sys_Rapatrie { |
---|
839 | IGCM_debug_PushStack "IGCM_sys_Rapatrie" $@ |
---|
840 | if ( $DEBUG_sys ) ; then |
---|
841 | echo "IGCM_sys_Rapatrie :" $@ |
---|
842 | fi |
---|
843 | |
---|
844 | typeset RET=0 |
---|
845 | |
---|
846 | IGCM_sys_Get ${R_STOCKAGE}/$2 $1 ; |
---|
847 | let $(( RET=RET+$? )) |
---|
848 | IGCM_sys_Cd $1 ; |
---|
849 | let $(( RET=RET+$? )) |
---|
850 | IGCM_sys_UnTar $2 ; |
---|
851 | let $(( RET=RET+$? )) |
---|
852 | |
---|
853 | if [ ${RET} -gt 0 ] ; then |
---|
854 | echo "IGCM_sys_Rapatrie : erreur." |
---|
855 | IGCM_debug_Exit "IGCM_sys_Rapatrie" |
---|
856 | fi |
---|
857 | IGCM_debug_PopStack "IGCM_sys_Rapatrie" |
---|
858 | } |
---|
859 | |
---|
860 | ############################################################## A FINIR !! |
---|
861 | |
---|
862 | #D-#================================================== |
---|
863 | #D-function IGCM_sys_GetDate_FichWork |
---|
864 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
865 | #D-* Examples: |
---|
866 | #D- |
---|
867 | function IGCM_sys_GetDate_FichWork { |
---|
868 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
869 | if ( $DEBUG_sys ) ; then |
---|
870 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
871 | fi |
---|
872 | # donne la date filesys d'un fichier sur la machine work |
---|
873 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
874 | } |
---|
875 | |
---|
876 | #D-#================================================== |
---|
877 | #D-function IGCM_sys_GetDate_FichArchive |
---|
878 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
879 | #D-* Examples: |
---|
880 | #D- |
---|
881 | function IGCM_sys_GetDate_FichArchive { |
---|
882 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
883 | if ( $DEBUG_sys ) ; then |
---|
884 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
885 | fi |
---|
886 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
887 | } |
---|
888 | |
---|
889 | ############################################################## |
---|
890 | # REBUILD OPERATOR |
---|
891 | |
---|
892 | function IGCM_sys_rebuild { |
---|
893 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
894 | if ( $DEBUG_sys ) ; then |
---|
895 | echo "IGCM_sys_rebuild :" $@ |
---|
896 | fi |
---|
897 | /home/rech/psl/rpsl035/SX/bin/rebuild -f -o $@ |
---|
898 | if [ $? -gt 0 ] ; then |
---|
899 | echo "IGCM_sys_rebuild : erreur ${@}." |
---|
900 | IGCM_debug_Exit "rebuild" |
---|
901 | fi |
---|
902 | |
---|
903 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
904 | } |
---|
905 | |
---|
906 | ############################################################ |
---|
907 | # Activate Running Environnment Variables |
---|
908 | |
---|
909 | function IGCM_sys_activ_variables { |
---|
910 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
911 | if ( $DEBUG_sys ) ; then |
---|
912 | echo "IGCM_sys_activ_variables " |
---|
913 | fi |
---|
914 | |
---|
915 | # -------------------------------------------------------------------- |
---|
916 | #D- MPI specifications |
---|
917 | # -------------------------------------------------------------------- |
---|
918 | |
---|
919 | #D-- MPISUSPEND |
---|
920 | export MPISUSPEND=ON |
---|
921 | #D-- MPIPROGINF |
---|
922 | export MPIPROGINF=ALL |
---|
923 | |
---|
924 | # -------------------------------------------------------------------- |
---|
925 | #D- Other specifications |
---|
926 | # -------------------------------------------------------------------- |
---|
927 | |
---|
928 | #D- max number of character/line in output job |
---|
929 | export F_SYSLEN=5000 |
---|
930 | #D- number of error that can be admitted on the NEC |
---|
931 | export F_ERRCNT=0 |
---|
932 | #D- global performance |
---|
933 | export F_PROGINF=DETAIL |
---|
934 | #D- activate ftrace (with -ftrace) |
---|
935 | export F_FTRACE=YES |
---|
936 | #D- communication information (with -ftrace) |
---|
937 | export MPICOMMINF=ALL |
---|
938 | #D- I/O performance (FORTRAN I/O only not netCDF) |
---|
939 | export F_FILEINF=NO |
---|
940 | # netCDF I/O performance |
---|
941 | export NC_FILEINF=NO |
---|
942 | |
---|
943 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
944 | |
---|
945 | } |
---|
946 | |
---|
947 | ############################################################ |
---|
948 | # Desactivate Running Environnment Variables |
---|
949 | |
---|
950 | function IGCM_sys_desactiv_variables { |
---|
951 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
952 | if ( $DEBUG_sys ) ; then |
---|
953 | echo "IGCM_sys_desactiv_variables " |
---|
954 | fi |
---|
955 | # -------------------------------------------------------------------- |
---|
956 | #D- MPI specifications |
---|
957 | # -------------------------------------------------------------------- |
---|
958 | |
---|
959 | #D-- MPIPROGINF |
---|
960 | export MPIPROGINF=NO |
---|
961 | |
---|
962 | # -------------------------------------------------------------------- |
---|
963 | #D- Other specifications |
---|
964 | # -------------------------------------------------------------------- |
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965 | |
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966 | #D- global performance |
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967 | export F_PROGINF=NO |
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968 | |
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969 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
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970 | |
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971 | } |
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972 | |
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973 | ############################################################ |
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974 | # Build run file |
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975 | |
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976 | function IGCM_sys_build_run_file { |
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977 | IGCM_debug_PushStack "IGCM_sys_build_run_file" $@ |
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978 | if ( $DEBUG_sys ) ; then |
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979 | echo "IGCM_sys_build_run_file " $@ |
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980 | fi |
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981 | (( NUM_PROC_ATM = BATCH_NUM_PROC_TOT - 1 )) |
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982 | (( NUM_PROC_OASIS = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) |
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983 | (( NUM_PROC_OCE = BATCH_NUM_PROC_TOT - NUM_PROC_ATM )) |
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984 | |
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985 | if [ $1 = MPI2 ]; then |
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986 | cat <<EOF > run_file |
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987 | -p 1 -np 1 -e ./oasis |
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988 | EOF |
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989 | (( NUM_PROCESS = BATCH_NUM_PROC_TOT + 1 )) |
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990 | config_UserChoices_JobRunOptions='"-max_np ${NUM_PROCESS} -f"' |
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991 | |
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992 | elif [ $1 = MPI1 ]; then |
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993 | cat <<EOF > run_file |
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994 | -p $NUM_PROC_OASIS -e ./oasis |
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995 | -p $NUM_PROC_ATM -e ./lmdz.x |
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996 | -p $NUM_PROC_OCE -e ./opa.xx |
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997 | EOF |
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998 | |
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999 | fi |
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1000 | |
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1001 | IGCM_debug_PopStack "IGCM_sys_build_run_file" |
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1002 | |
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1003 | } |
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