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Changeset 4 for vendor/nemo/current/NEMOGCM/CONFIG/AMM12_PISCES
- Timestamp:
- 02/08/12 17:17:04 (13 years ago)
- Location:
- vendor/nemo/current/NEMOGCM/CONFIG/AMM12_PISCES/EXP00
- Files:
-
- 4 edited
-
iodef.xml (modified) (8 diffs)
-
namelist (modified) (2 diffs)
-
namelist_pisces (modified) (1 diff)
-
namelist_top (modified) (6 diffs)
Legend:
- Unmodified
- Added
- Removed
-
vendor/nemo/current/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/iodef.xml
r1 r4 136 136 <field id="utau" description="Wind Stress along i-axis" unit="N/m2" axis_ref="none" /> 137 137 <field id="uoce" description="ocean current along i-axis" unit="m/s" /> 138 <field id="uocetr_eff" description="Effective ocean transport along i-axis" unit="m3/s"/>138 <field id="uocetr_eff" description="Effective ocean transport along i-axis" unit="m3/s" /> 139 139 <!-- uoce_eiv: available with key_traldf_eiv and key_diaeiv --> 140 140 <field id="uoce_eiv" description="EIV ocean current along i-axis" unit="m/s" /> … … 154 154 <field id="vtau" description="Wind Stress along j-axis" unit="N/m2" axis_ref="none" /> 155 155 <field id="voce" description="ocean current along j-axis" unit="m/s" /> 156 <field id="vocetr_eff" description="Effective ocean transport along j-axis" unit="m3/s"/>156 <field id="vocetr_eff" description="Effective ocean tra,sport along j-axis" unit="m3/s" /> 157 157 <!-- voce_eiv: available with key_traldf_eiv and key_diaeiv --> 158 158 <field id="voce_eiv" description="EIV ocean current along j-axis" unit="m/s" /> … … 171 171 <group id="grid_W" axis_ref="depthw" grid_ref="grid_W"> 172 172 <field id="woce" description="ocean vertical velocity" unit="m/s" /> 173 <field id="wocetr_eff" description="effective ocean vertical transport" unit="m3/s" />173 <field id="wocetr_eff" description="effective ocean vertical transport" unit="m3/s" /> 174 174 <!-- woce_eiv: available with key_traldf_eiv and key_diaeiv --> 175 175 <field id="woce_eiv" description="EIV ocean vertical velocity" unit="m/s" /> … … 219 219 <!-- ptrc on T grid --> 220 220 221 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 222 <field id="DIC" description="Dissolved inorganic Concentration" unit="m olC/L" />223 <field id="Alkalini" description="Total Alkalinity Concentration" unit=" eq/L" />224 <field id="O2" description="Oxygen Concentration" unit="m olO2/L" />225 <field id="CaCO3" description="Calcite Concentration" unit="m olC/L" />226 <field id="PO4" description="Phosphate Concentration" unit="m olC/L" />227 <field id="POC" description="Small organic carbon Concentration" unit="m olC/L" />228 <field id="Si" description="Silicate Concentration" unit="m olSi/L" />229 <field id="PHY" description="Nanophytoplankton Concentration" unit="m olC/L" />230 <field id="ZOO" description="Microzooplankton Concentration" unit="m olC/L" />231 <field id="DOC" description="Dissolved organic Concentration" unit="m olC/L" />232 <field id="PHY2" description="Diatoms Concentration" unit="m olC/L" />233 <field id="ZOO2" description="Mesozooplankton Concentration" unit="m olC/L" />234 <field id=" BSi" description="Diatoms Silicate Concentration" unit="molC/L" />235 <field id="Fer" description="Dissolved Iron Concentration" unit="m olFe/L" />236 <field id="BFe" description="Big iron particles Concentration" unit="m olFe/L" />237 <field id="GOC" description="Big organic carbon Concentration" unit="m olC/L" />238 <field id="SFe" description="Small iron particles Concentration" unit="m olFe/L" />239 <field id="DFe" description="Diatoms iron Concentration" unit="m olFe/L" />240 <field id=" DSi" description="Sinking biogenic Silicate Concentration" unit="molC/L" />241 <field id="NFe" description="Nano iron Concentration" unit="m olC/L" />242 <field id="NCHL" description="Nano chlorophyl Concentration" unit=" gChl/L" />243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit=" gChl/L" />244 <field id="NO3" description="Nitrates Concentration" unit="m olC/L" />245 <field id="NH4" description="Ammonium Concentration" unit="m olC/L" />221 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 222 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 223 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 224 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 225 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> 226 <field id="PO4" description="Phosphate Concentration" unit="mmol/m3" /> 227 <field id="POC" description="Small organic carbon Concentration" unit="mmol/m3" /> 228 <field id="Si" description="Silicate Concentration" unit="mmol/m3" /> 229 <field id="PHY" description="Nanophytoplankton Concentration" unit="mmol/m3" /> 230 <field id="ZOO" description="Microzooplankton Concentration" unit="mmol/m3" /> 231 <field id="DOC" description="Dissolved organic Concentration" unit="mmol/m3" /> 232 <field id="PHY2" description="Diatoms Concentration" unit="mmol/m3" /> 233 <field id="ZOO2" description="Mesozooplankton Concentration" unit="mmol/m3" /> 234 <field id="DSi" description="Diatoms Silicate Concentration" unit="mmol/m3" /> 235 <field id="Fer" description="Dissolved Iron Concentration" unit="mmol/m3" /> 236 <field id="BFe" description="Big iron particles Concentration" unit="mmol/m3" /> 237 <field id="GOC" description="Big organic carbon Concentration" unit="mmol/m3" /> 238 <field id="SFe" description="Small iron particles Concentration" unit="mmol/m3" /> 239 <field id="DFe" description="Diatoms iron Concentration" unit="mmol/m3" /> 240 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 241 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 242 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 244 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 245 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> 246 246 </group> 247 247 … … 249 249 250 250 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/L" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/L" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 262 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 263 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 264 <field id="GRAZ" description="Grazing by zooplankton" unit="molC/m3/s" axis_ref="deptht" /> 265 <field id="Nfix" description="Nitrogen fixation at surface" unit="molN/m2/s" /> 266 <field id="EPC100" description="Export of carbon particles at 100 m" unit="molC/m2/s" /> 267 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="molFe/m2/s" /> 268 <field id="EPSI100" description="Export of Silicate at 100 m" unit="molSi/m2/s" /> 269 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="molC/m2/s" /> 270 <field id="Cflx" description="DIC flux" unit="molC/m2/s" /> 271 <field id="Oflx" description="Oxygen flux" unit="molC/m2/s" /> 272 <field id="Kg" description="Gas transfer" unit="molC/m2/s/uatm" /> 273 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 274 <field id="Dpo2" description="Delta O2" unit="uatm" /> 275 <field id="Heup" description="Euphotic layer depth" unit="m" /> 276 <field id="Irondep" description="Iron deposition" unit="molFe/m2/s" /> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="mol/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="mol/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="mol/m3/s" axis_ref="deptht" /> 262 <field id="PCAL" description="Calcite production" unit="mol/m3/s" axis_ref="deptht" /> 263 <field id="DCAL" description="Calcite dissolution" unit="mol/m3/s" axis_ref="deptht" /> 264 <field id="GRAZ" description="Grazing by zooplankton" unit="mol/m3/s" axis_ref="deptht" /> 265 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 266 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 267 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 268 <field id="MuNlight" description="Light limited growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 269 <field id="MuDlight" description="Light limited growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 270 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 271 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 272 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 273 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 274 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 275 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 276 <field id="Nfix" description="Nitrogen fixation at surface" unit="mol/m2/s" /> 277 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 278 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 279 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 280 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 281 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 282 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 283 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 284 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 285 <field id="Dpo2" description="Delta O2" unit="uatm" /> 286 <field id="Heup" description="Euphotic layer depth" unit="m" /> 287 <field id="Irondep" description="Iron deposition" unit="mol/m2/s" /> 277 288 </group> 278 289 … … 478 489 <field ref="PHY2" /> 479 490 <field ref="ZOO2" /> 480 <field ref=" BSi" />491 <field ref="DSi" /> 481 492 <field ref="Fer" /> 482 493 <field ref="BFe" /> … … 484 495 <field ref="SFe" /> 485 496 <field ref="DFe" /> 486 <field ref=" DSi" />497 <field ref="GSi" /> 487 498 <field ref="NFe" /> 488 499 <field ref="NCHL" /> … … 507 518 <field ref="DCAL" /> 508 519 <field ref="GRAZ" /> 520 <field ref="Mumax" /> 521 <field ref="MuN" /> 522 <field ref="MuD" /> 523 <field ref="MuNlight" /> 524 <field ref="MuDlight" /> 525 <field ref="LNnut" /> 526 <field ref="LDnut" /> 527 <field ref="LNFe" /> 528 <field ref="LDFe" /> 529 <field ref="LNlight" /> 530 <field ref="LDlight" /> 509 531 <field ref="EPC100" /> 510 532 <field ref="EPFE100" /> -
vendor/nemo/current/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/namelist
r1 r4 525 525 ln_traadv_qck = .false. ! QUICKEST scheme 526 526 / 527 !----------------------------------------------------------------------- 528 &namtra_ldf ! lateral diffusion scheme for tracer 529 !----------------------------------------------------------------------- 530 ! ! Type of the operator : 531 ln_traldf_lap = .true. ! laplacian operator 532 ln_traldf_bilap = .false. ! bilaplacian operator 533 ! ! Direction of action : 534 ln_traldf_level = .false. ! iso-level 535 ln_traldf_hor = .true. ! horizontal (geopotential) (require "key_ldfslp" when ln_sco=T) 536 ln_traldf_iso = .false. ! iso-neutral (require "key_ldfslp") 537 ln_traldf_grif = .false. ! griffies skew flux formulation (require "key_ldfslp") 538 ln_traldf_gdia = .false. ! griffies operator strfn diagnostics (require "key_ldfslp") 539 ln_triad_iso = .false. ! griffies operator calculates triads twice => pure lateral mixing in ML (require "key_ldfslp") 540 ln_botmix_grif = .false. ! griffies operator with lateral mixing on bottom (require "key_ldfslp") 541 ! Coefficient 542 rn_aht_0 = 50. ! horizontal eddy diffusivity for tracers [m2/s] 527 !---------------------------------------------------------------------------------- 528 &namtra_ldf ! lateral diffusion scheme for tracers 529 !---------------------------------------------------------------------------------- 530 ! ! Operator type: 531 ln_traldf_lap = .true. ! laplacian operator 532 ln_traldf_bilap = .false. ! bilaplacian operator 533 ! ! Direction of action: 534 ln_traldf_level = .false. ! iso-level 535 ln_traldf_hor = .true. ! horizontal (geopotential) (needs "key_ldfslp" when ln_sco=T) 536 ln_traldf_iso = .false. ! iso-neutral (needs "key_ldfslp") 537 ! ! Griffies parameters (all need "key_ldfslp") 538 ln_traldf_grif = .false. ! use griffies triads 539 ln_traldf_gdia = .false. ! output griffies eddy velocities 540 ln_triad_iso = .false. ! pure lateral mixing in ML 541 ln_botmix_grif = .false. ! lateral mixing on bottom 542 ! ! Coefficients 543 ! Eddy-induced (GM) advection always used with Griffies; otherwise needs "key_traldf_eiv" 544 ! Value rn_aeiv_0 is ignored unless = 0 with Held-Larichev spatially varying aeiv 545 ! (key_traldf_c2d & key_traldf_eiv & key_orca_r2, _r1 or _r05) 546 rn_aeiv_0 = 0. ! eddy induced velocity coefficient [m2/s] 547 rn_aht_0 = 50. ! horizontal eddy diffusivity for tracers [m2/s] 543 548 rn_ahtb_0 = 0. ! background eddy diffusivity for ldf_iso [m2/s] 544 rn_aeiv_0 = 0. ! eddy induced velocity coefficient [m2/s] (require "key_traldf_eiv")549 ! (normally=0; not used with Griffies) 545 550 / 546 551 !----------------------------------------------------------------------- … … 857 862 nitend_han = 75 ! Last time step used for harmonic analysis 858 863 nstep_han = 15 ! Time step frequency for harmonic analysis 859 nb_ana = 2 ! Number of harmonics to analyse860 864 tname(1) = 'M2' ! Name of tidal constituents 861 865 tname(2) = 'K1' -
vendor/nemo/current/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/namelist_pisces
r1 r4 222 222 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 223 223 ln_pisdmp = .true. ! Relaxation fo some tracers to a mean value 224 nn_pisdmp = 5475! Frequency of Relaxation224 nn_pisdmp = 210240 ! Frequency of Relaxation 225 225 / 226 226 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' -
vendor/nemo/current/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/namelist_top
r1 r4 13 13 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 14 14 nn_dttrc = 1 ! time step frequency for passive sn_tracers 15 nn_writetrc = 10! time step frequency for sn_tracer outputs15 nn_writetrc = 576 ! time step frequency for sn_tracer outputs 16 16 ln_rsttr = .false. ! start from a restart file (T) or not (F) 17 17 nn_rsttr = 0 ! restart control = 0 initial time step is not compared to the restart file value … … 20 20 cn_trcrst_in = "restart_trc" ! suffix of pass. sn_tracer restart name (input) 21 21 cn_trcrst_out = "restart_trc" ! suffix of pass. sn_tracer restart name (output) 22 ln_trcdta = . false. ! Initialisation from data input file (T) or not (F)22 ln_trcdta = .true. ! Initialisation from data input file (T) or not (F) 23 23 ! 24 ! ! name ! title of the field ! units! initial data ! save !25 ! ! ! !! from file ! or not !26 ! ! ! !! or not ! !24 ! ! name ! title of the field ! initial data ! initial data ! save ! 25 ! ! ! ! units ! from file ! or not ! 26 ! ! ! ! ! or not ! ! 27 27 sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .true. 28 28 sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .true. … … 37 37 sn_tracer(11) = 'PHY2 ' , 'Diatoms Concentration ', 'mol-C/L' , .false. , .true. 38 38 sn_tracer(12) = 'ZOO2 ' , 'Mesozooplankton Concentration ', 'mol-C/L' , .false. , .true. 39 sn_tracer(13) = ' BSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true.39 sn_tracer(13) = 'DSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .true. 40 40 sn_tracer(14) = 'Fer ' , 'Dissolved Iron Concentration ', 'mol-C/L' , .true. , .true. 41 41 sn_tracer(15) = 'BFe ' , 'Big iron particles Concentration ', 'mol-C/L' , .false. , .true. … … 43 43 sn_tracer(17) = 'SFe ' , 'Small iron particles Concentration ', 'mol-C/L' , .false. , .true. 44 44 sn_tracer(18) = 'DFe ' , 'Diatoms iron Concentration ', 'mol-C/L' , .false. , .true. 45 sn_tracer(19) = ' DSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true.45 sn_tracer(19) = 'GSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .true. 46 46 sn_tracer(20) = 'NFe ' , 'Nano iron Concentration ', 'mol-C/L' , .false. , .true. 47 47 sn_tracer(21) = 'NCHL ' , 'Nano chlorophyl Concentration ', 'mol-C/L' , .false. , .true. … … 130 130 ! or mixed-layer trends ('key_trdmld_trc') 131 131 !---------------------------------------------------------------------- 132 nn_trd_trc = 5 475! time step frequency and tracers trends132 nn_trd_trc = 576 ! time step frequency and tracers trends 133 133 nn_ctls_trc = 0 ! control surface type in mixed-layer trends (0,1 or n<jpk) 134 134 rn_ucf_trc = 1 ! unit conversion factor (=1 -> /seconds ; =86400. -> /day) … … 142 142 &namtrc_dia ! parameters for passive tracer additional diagnostics 143 143 !---------------------------------------------------------------------- 144 ln_diatrc = . false.! save additional diag. (T) or not (F)145 nn_writedia = 5 475! time step frequency for diagnostics144 ln_diatrc = .true. ! save additional diag. (T) or not (F) 145 nn_writedia = 576 ! time step frequency for diagnostics 146 146 /
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