source: NEMO/branches/2018/dev_r9956_ENHANCE05_ZAD_AIMP/doc/tex_main/NEMO_manual.bib @ 9979

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New development branch for the adaptive-implicit vertical advection (05_Gurvan-Vertical_advection)

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10@STRING{ASL = {Atmospheric Science Letters}}
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18@STRING{CUP = {Cambridge University Press}}
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22@STRING{D = {Dover Publications}}
23
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25
26@STRING{DSR = {Deep-Sea Res.}}
27
28@STRING{E = {Eyrolles}}
29
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32@STRING{GRL = {Geophys. Res. Let.}}
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44@STRING{JFM = {J. Fluid Mech.}}
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46@STRING{JGR = {J. Geophys. Res}}
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48@STRING{JHUP = {The Johns Hopkins University Press}}
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64@STRING{MGH = {McGraw-Hill}}
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66@STRING{MWR = {Mon. Wea. Rev.}}
67
68@STRING{Nature = {Nat.}}
69
70@STRING{NH = {North-Holland}}
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72@STRING{Ocean = {Oceanology}}
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74@STRING{OD = {Ocean Dyn.}}
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76@STRING{OM = {Ocean Modelling}}
77
78@STRING{OS = {Ocean Sc.}}
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80@STRING{OUP = {Oxford University Press}}
81
82@STRING{PH = {Prentice-Hall}}
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98@STRING{SV = {Springer-Verlag}}
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100@STRING{Tellus = {Tellus}}
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659  author = {L. Carr\`{e}re and F. Lyard},
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680 year = {2005},
681 institution = {European Union: Marine Environment and Security for the European Area (MERSEA) Integrated Project},
682note = {MERSEA-WP09-MERCA-TASK-9.1.1}
683}
684
685@ARTICLE{Chassignet_al_JPO03,
686  author = {Eric P. Chassignet and Linda T. Smith and George R. Halliwell},
687  title = {North Atlantic Simulations with the Hybrid Coordinate Ocean Model
688   (HYCOM): Impact of the Vertical Coordinate Choice, Reference Pressure, and Thermobaricity},
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692  pages = {2504-2526}
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697   and L. Fairhead and G.M. Flato and H. Gordon and E. Guilyardi and X. Jiang
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702  journal = CD,
703  year = {2000},
704  volume = {16},
705  pages = {775--787}
706}
707
708@ARTICLE{Canuto_2001,
709  author = {V. M. Canuto and A. Howard and Y. Cheng and M. S. Dubovikov},
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713  volume = {24},  number = {12},
714  pages = {2546--2559}
715}
716
717@ARTICLE{Cox1987,
718  author = {M. Cox},
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720  journal = OM,
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722  volume = {74},
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724}
725
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728  title = {Modeling wave-enhanced turbulence in the ocean surface layer},
729  journal = JPO,
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747   in a climate ocean model},
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755  author = {R. Daley and E. Barker},
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757  publisher = {NRL/PU/7530-01-441, Available from the Naval Research Laboratory, Monterey, CA., 93943-5502},
758  year = {2001},
759  pages = {163pp}
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763  author = {S. J. D. D'Alessio and K. Abdella and N. A. McFarlane},
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809@article{de_lavergne_JPO2016_mixing,
810   author = {C. de Lavergne and G. Madec and J. Le Sommer and A. J. G. Nurser and A. C. Naveira Garabato },
811   title = {On Antarctic Bottom Water consumption in the abyssal ocean},
812   issn = {0022-3670},
813   doi= {10.1175/JPO-D-14-0201.1},
814   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.},
815   journal = {Journal of Physical Oceanography},
816   year = {2016},
817   volume = {46},  pages = {635-–661}
818}
819
820@article{de_lavergne_JPO2016_efficiency,
821   author = {C. de Lavergne and G. Madec and J. Le Sommer and A. J. G. Nurser and A. C. Naveira Garabato },
822   title = {The impact of a variable mixing efficiency on the abyssal overturning},
823   issn = {0022-3670},
824   doi = {10.1175/JPO-D-14-0259.1},
825   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.},
826   journal = {Journal of Physical Oceanography},
827   year = {2016},
828   volume = {46},  pages = {663-–681}
829}
830
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846  year = {2014},
847  pages = {138pp}
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969   and Y. Yamanaka and K. Rodgers and G. Madec and J.C. Orr},
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1044   and A. Harzallah, 1995 : Progress from 1989 to 1992 in understanding
1045   the circulation of the Western Mediterranean Sea. Oceanologica Acta,
1046   18, 2, 255-271.},
1047  title = {EUROMODEL Group (P.M. Lehucher, L. Beautier, M. Chartier, F. Martel,
1048   L. Mortier, P. Brehmer, C. Millot, C. Alberola, M. Benzhora, I. Taupier-Letage,
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1118@ARTICLE{Gargett1984,
1119  author = {A. E. Gargett},
1120  title = {Vertical eddy diffusivity in the ocean interior},
1121  journal = JMR,
1122  year = {1984},
1123  volume = {42}
1124}
1125
1126@ARTICLE{Gaspar1990,
1127  author = {P. Gaspar and Y. Gr{\'e}goris and J.-M. Lefevre},
1128  title = {A simple eddy kinetic energy model for simulations of the oceanic vertical mixing\:
1129    Tests at Station Papa and long-term upper ocean study site},
1130  journal = JGR,
1131  year = {1990},
1132  volume = {95},  number = {C9}
1133}
1134
1135@ARTICLE{Gent1990,
1136  author = {P. R. Gent and J. C. Mcwilliams},
1137  title = {Isopycnal Mixing in Ocean Circulation Models},
1138  journal = JPO,
1139  year = {1990},
1140  volume = {20},  number = {1},
1141  pages = {150--155},
1142}
1143
1144@Article{Gentemann_al_JGR09,
1145  author =   {C. L. Gentemann  and P. J. Minnett and B. Ward},
1146  title =        {Profiles of Ocean Surface heating ({POSH}): A new model
1147                  of upper ocean diurnal warming},
1148  journal =     JGR,
1149  year =     {2009},
1150  Volume =   {114},
1151  Pages =    {C07017},
1152  doi =   {10.1029/2008JC004825},
1153  OPTannote =   {}
1154}
1155
1156@ARTICLE{Gerdes1993a,
1157  author = {R. Gerdes},
1158  title = {A primitive equation ocean circulation model using a general vertical
1159   coordinate transformation 1. Description and testing of the model},
1160  journal = JGR,
1161  year = {1993},
1162  volume = {98}
1163}
1164
1165@ARTICLE{Gerdes1993b,
1166  author = {R. Gerdes},
1167  title = {A primitive equation ocean circulation model using a general vertical
1168   coordinate transformation 2. Application to an overflow problem},
1169  journal = JGR,
1170  year = {1993},
1171  volume = {98},
1172  pages = {14703--14726}
1173}
1174
1175@ARTICLE{Gerdes1991,
1176   Author = {Gerdes, R{\"u}diger and K{\"o}berle, Cornelia and Willebrand, J{\"u}rgen},
1177   Doi = {10.1007/BF00210006},
1178   Journal = {Clim. Dynamics},
1179   Number = {4},
1180   Pages = {211--226},
1181   Title = {The influence of numerical advection schemes on the results of ocean general circulation models},
1182   Volume = {5},
1183   Year = {1991},
1184}
1185@TECHREPORT{Gibson_TR86,
1186  author = {J. K. Gibson},
1187  title = {Standard software development and maintenance},
1188  institution = {Operational Dep., ECMWF, Reading, UK.},
1189  year = {1986}
1190}
1191
1192@BOOK{Gill1982,
1193  title = {Atmosphere-Ocean Dynamics},
1194  publisher = {International Geophysics Series, Academic Press, New-York},
1195  year = {1982},
1196  author = {A. E. Gill}
1197}
1198
1199@article{goff_JGR2010,
1200   author = {J. A. Goff},
1201   title = {Global prediction of abyssal hill root-mean-square heights from small-scale altimetric gravity variability},
1202   issn = {2156-2202},
1203   doi = {10.1029/2010JB007867},
1204   abstract = {Abyssal hills, which are pervasive landforms on the seafloor of the Earth's oceans, represent a potential tectonic record of the history of mid-ocean ridge spreading. However, the most detailed global maps of the seafloor, derived from the satellite altimetry-based gravity field, cannot be used to deterministically characterize such small-scale ({\textless}10 km) morphology. Nevertheless, the small-scale variability of the gravity field can be related to the statistical properties of abyssal hill morphology using the upward continuation formulation. In this paper, I construct a global prediction of abyssal hill root-mean-square (rms) heights from the small-scale variability of the altimetric gravity field. The abyssal hill-related component of the gravity field is derived by first masking distinct features, such as seamounts, mid-ocean ridges, and continental margins, and then applying a newly designed adaptive directional filter algorithm to remove fracture zone/discontinuity fabric. A noise field is derived empirically by correlating the rms variability of the small-scale gravity field to the altimetric noise field in regions of very low relief, and the noise variance is subtracted from the small-scale gravity variance. Suites of synthetically derived, abyssal hill formed gravity fields are generated as a function of water depth, basement rms heights, and sediment thickness and used to predict abyssal hill seafloor rms heights from corrected small-scale gravity rms height. The resulting global prediction of abyssal hill rms heights is validated qualitatively by comparing against expected variations in abyssal hill morphology and quantitatively by comparing against actual measurements of rms heights. Although there is scatter, the prediction appears unbiased.},
1205   volume = {115},
1206   number = {B12},
1207   journal = {Journal of Geophysical Research: Solid Earth},
1208   year = {2010},
1209   pages = {B12104},
1210}
1211
1212@ARTICLE{Goosse_al_JGR99,
1213  author = {H. Goosse and E. Deleersnijder and T. Fichefet and M. England},
1214  title = {Sensitivity of a global coupled ocean-sea ice model to the parameterization of vertical mixing},
1215  journal = JGR,
1216  year = {1999},
1217  volume = {104},
1218  pages = {13,681--13,695}
1219}
1220
1221@ARTICLE{Gorgues_al_GRL07,
1222  author = {T. Gorgues and C. Menkes and O. Aumont and K. Rodgers and G. Madec and Y. Dandonneau},
1223  title = {Indonesian Throughflow control of the eastern equatorial Pacific biogeochemistry},
1224  journal = GRL,
1225  year = {2007},
1226  volume = {34},
1227  pages = {L05609},
1228  doi = {10.1029/2006GL028210},
1229}
1230
1231@ARTICLE{Graham_McDougall_JPO13,
1232  author = {F.S. Graham and T.J. McDougall},
1233  title = {Quantifying the nonconservative production of conservative temperature, potential temperature, and entropy},
1234  journal = JPO,
1235  year = {2013},
1236  volume = {43},
1237  pages = {838--862},
1238  doi = {10.1175/JPO-D-11-0188.1}
1239}
1240
1241@ARTICLE{Greatbatch_JGR94,
1242  author = {R. J. Greatbatch},
1243  title = {A note on the representation of steric sea level in models that conserve
1244   volume rather than mass},
1245  journal = JGR,
1246  year = {1994},
1247  volume = {99},  number = {C6},
1248  pages = {12,767--12,771}
1249}
1250
1251@BOOK{Griffies_Bk04,
1252  title = {Fundamentals of ocean climate models},
1253  publisher = {Princeton University Press, 434pp},
1254  year = {2004},
1255  author = {S.M. Griffies}
1256}
1257
1258@ARTICLE{Griffies_JPO98,
1259  author = {S.M. Griffies},
1260  title = {The Gent-McWilliams skew-flux},
1261  journal = JPO,
1262  year = {1998},
1263  volume = {28},
1264  pages = {831--841}
1265}
1266
1267@ARTICLE{Griffies_al_OM09,
1268  author = {S.M. Griffies and A. Biastoch and C. Boning and F. Bryan and G. Danabasoglu
1269   and E. P. Chassignet and M. H. England and R. Gerdes and H. Haak
1270   and R. W. Hallberg and W. Hazeleger and J. Jungclaus and W. G. Large
1271   and G. Madec and A. Pirani and B. L. Samuels and M. Scheinert and
1272   A. Sen Gupta and C. A. Severijns and H. L. Simmons and A.-M. Treguier
1273   and M. Winton and S. Yeager and J. Yin},
1274  title = {Coordinated Ocean-ice Reference Experiments (COREs)},
1275  journal = OM,
1276  year = {2009},
1277  volume = {26},  number = {1-2},
1278  pages = {1--46},
1279  doi = {10.1016/j.ocemod.2008.08.007},
1280}
1281
1282@ARTICLE{Griffies_al_OS05,
1283  author = {S.M. Griffies and A. Gnanadesikan and K.W. Dixon and J.P. Dunne and
1284   R. Gerdes and M.J. Harrison and A. Rosati and J.L. Russell and B.L.
1285   Samuels and M.J. Spelman and M. Winton and R. Zhang},
1286  title = {Formulation of an ocean model for global climate simulations},
1287  journal = OS,
1288  year = {2005},
1289  volume = {1},
1290  pages = {45--79}
1291  }
1292
1293@ARTICLE{Griffies_al_JPO98,
1294  author = {S.M. Griffies and A. Gnanadesikan and R.C. Pacanowski and V.D. Larichev
1295   and J.K. Dukowicz and R.D. Smith},
1296  title = {Isoneutral Diffusion in a z-Coordinate Ocean Model},
1297  journal = JPO,
1298  year = {1998},
1299  volume = {28},  number = {5},
1300  pages = {805--830},
1301}
1302
1303@ARTICLE{Griffies_al_MWR01,
1304  author = {S.M. Griffies and R.C. Pacanowski and M. Schmidt and V. Balaji},
1305  title = {Tracer Conservation with an Explicit Free Surface Method for z-Coordinate
1306   Ocean Models},
1307  journal = MWR,
1308  year = {2001},
1309  volume = {129},  number = {5},
1310  pages = {1081--1098},
1311}
1312
1313@ARTICLE{Griffies_Hallberg_MWR00,
1314  author = {S.M. Griffies and R.W. Hallberg},
1315  title = {Biharmonic friction with a Smagorinsky-like viscosity for use in large-scale eddy-permitting ocean models},
1316  journal = MWR,
1317  year = {2000},
1318  volume = {128}, 
1319  pages = {2935–-2946},
1320  doi = {10.1175/1520-0493(2000)128}
1321}
1322
1323@ARTICLE{Guilyardi_al_JC04,
1324  author = {E. Guilyardi and S. Gualdi and J. M. Slingo and A. Navarra and P. Delecluse
1325    and J. Cole and G. Madec and M. Roberts and M. Latif and L. Terray},
1326  title = {Representing El Ni\~{n}o in coupled ocean-atmosphere GCMs: the dominant role of the atmospheric component},
1327  journal = JC,
1328  year = {2004},
1329  volume = {17},
1330  pages = {4623--4629}
1331}
1332
1333@ARTICLE{Guilyardi_Madec_CD98,
1334  author = {E. Guilyardi and G. Madec},
1335  title = {Performance of the OPA-ARPEGE-T21 global ocean-atmosphere coupled model},
1336  journal = CD,
1337  year = {1997},
1338  volume = {13},
1339  pages = {149--165}
1340}
1341
1342@ARTICLE{Guilyardi_al_CD01,
1343  author = {E. Guilyardi and G. Madec and L. Terray},
1344  title = {The role of lateral ocean physics in the upper ocean thermal balance of a coupled ocean-atmosphere GCM},
1345  journal = CD,
1346  year = {2001},
1347  volume = {17},
1348  pages = {589--599},
1349  number = {8}
1350}
1351
1352@ARTICLE{Guilyardi_al_CRAS95,
1353  author = {E. Guilyardi and G. Madec and L. Terray and M. D\'{e}qu\'{e} and
1354   M. Pontaud and M. Imbard and D. Stephenson and M.-A. Filiberti and
1355   D. Cariolle and P. Delecluse and O. Thual},
1356  title = {Simulation couplée océan-atmosphère de la variabilité du climat},
1357  journal = {C. R. Acad. Sci Paris},
1358  year = {1995},
1359  volume = {320},  number = {s\'{e}rie IIa},
1360  pages = {683--690}
1361}
1362
1363@ARTICLE{Guyon_al_EP99,
1364  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard},
1365  title = {A Parallel ocean model for high resolution studies},
1366  journal = {Lecture Notes in Computer Science},
1367  year = {1999},
1368  volume = {Euro-Par'99},
1369  pages = {603--607}
1370}
1371
1372@ARTICLE{Guyon_al_CalPar99,
1373  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard and C. Herbaut
1374   and P. Fronier},
1375  title = {Parallelization of the OPA ocean model},
1376  journal = {Calculateurs Paralleles},
1377  year = {1999},
1378  volume = {11},  number = {4},
1379  pages = {499--517}
1380}
1381
1382@BOOK{Haltiner1980,
1383  title = {Numerical prediction and dynamic meteorology},
1384  publisher = {John Wiley {\&} Sons Eds., second edition},
1385  year = {1980},
1386  author = {G. J. Haltiner and R. T. Williams},
1387  pages = {477pp}
1388}
1389
1390@ARTICLE{Haney1991,
1391  author = {R. L. Haney},
1392  title = {On the Pressure Gradient Force over Steep Topography in Sigma Coordinate Ocean Models},
1393  journal = JPO,
1394  year = {1991},
1395  volume = {21},  number = {4},
1396  pages = {610--619},
1397}
1398
1399@ARTICLE{Hazeleger_Drijfhout_JPO98,
1400  author = {W. Hazeleger and S. S. Drijfhout},
1401  title = {Mode water variability in a model of the subtropical gyre: response to anomalous forcing},
1402  journal = JPO,
1403  year = {1998},
1404  volume = {28},
1405  pages = {266--288},
1406}
1407
1408@ARTICLE{Hazeleger_Drijfhout_JPO99,
1409  author = {W. Hazeleger and S. S. Drijfhout},
1410  title = {Stochastically forced mode water variability},
1411  journal = JPO,
1412  year = {1999},
1413  volume = {29},
1414  pages = {1772--1786},
1415}
1416
1417@ARTICLE{Hazeleger_Drijfhout_JGR00,
1418  author = {W. Hazeleger and S. S. Drijfhout},
1419  title = {A model study on internally generated variability in subtropical mode water formation},
1420  journal = JGR,
1421  year = {2000},
1422  volume = {105},
1423  pages = {13,965--13,979},
1424}
1425@ARTICLE{Hazeleger_Drijfhout_JPO00,
1426  author = {W. Hazeleger and S. S. Drijfhout},
1427  title = {Eddy subduction in a model of the subtropical gyre},
1428  journal = JPO,
1429  year = {2000},
1430  volume = {30},
1431  pages = {677--695},
1432}
1433
1434@ARTICLE{Hellerman_Rosenstein_JPO83,
1435  author = {S. Hellerman and  M. Rosenstein },
1436  title = {Normal monthly wind stress over the world ocean with error estimates},
1437  journal = JPO,
1438  year = {1983},
1439  volume = {13},
1440  pages = {1093--1104},
1441}
1442
1443@ARTICLE{He_Ding_JSC01,
1444  author = {Y. He and C. H. Q. Ding},
1445  title = {Using Accurate Arithmetics to Improve Numerical Reproducibility and Stability in Parallel Applications},
1446  journal = JSC,
1447  year = {2001},
1448  volume = {18},
1449  pages = {259--277},
1450}
1451
1452@ARTICLE{Hirt_al_JCP74,
1453  author = {C. W. Hirt and A. A. Amsden and J. L. Cook},
1454  title = {An Arbitrary Lagrangian--Eulerian Computing Method for All Flow Speeds},
1455  journal = JCP,
1456  year = {1974},
1457  volume = {14},
1458  pages = {227--253}
1459}
1460
1461@ARTICLE{Hofmeister_al_OM09,
1462  author = {R. Hofmeister and H. Burchard and J.-M. Beckers},
1463  title = {Non-uniform adaptive vertical grids for 3D numerical ocean models},
1464  journal = OM,
1465  year = {2009},
1466  volume = {33},
1467  pages = {70--86},
1468  doi = {10.1016/j.ocemod.2009.12.003},
1469  issn = {1463-5003},
1470}
1471
1472@ARTICLE{Holland1999,
1473  author = {D. Holland and A. Jenkins},
1474  title = {Modeling Thermodynamic Ice-Ocean Interactions at the Base of an Ice Shelf},
1475  journal = JPO,
1476  year = {1999},
1477  volume = {29}, 
1478  pages = {1787--1800},
1479}
1480
1481@ARTICLE{HollowayOM86,
1482  author = {Greg Holloway},
1483  title = {A Shelf Wave/Topographic Pump Drives Mean Coastal Circulation (part I)},
1484  journal = OM,
1485  year = {1986},
1486  volume = {68}, 
1487}
1488
1489@ARTICLE{HollowayJPO92,
1490  author = {Greg Holloway},
1491  title = {Representing Topographic Stress for Large-Scale Ocean Models},
1492  journal = JPO,
1493  year = {1992},
1494  volume = {22}, 
1495  pages = {1033--1046},
1496}
1497
1498@ARTICLE{HollowayJPO94,
1499  author = {Michael Eby and Greg Holloway},
1500  title = {Sensitivity of a Large-Scale Ocean Model to a Parameterization of Topographic Stress},
1501  journal = JPO,
1502  year = {1994},
1503  volume = {24}, 
1504  pages = {2577--2587},
1505}
1506
1507@ARTICLE{HollowayJGR09,
1508  author = {Greg Holloway and Zeliang Wang},
1509  title = {Representing eddy stress in an Arctic Ocean model},
1510  journal = JGR,
1511  year = {2009},
1512  doi = {10.1029/2008JC005169}, 
1513}
1514
1515@ARTICLE{HollowayOM08,
1516  author = {Mathew Maltrud and Greg Holloway},
1517  title = {Implementing biharmonic neptune in a global eddying ocean model},
1518  journal = OM,
1519  year = {2008},
1520  volume = {21}, 
1521  pages = {22--34},
1522}
1523
1524@ARTICLE{Hordoir_al_CD08,
1525  author = {R. Hordoir and J. Polcher and J.-C. Brun-Cottan and G. Madec},
1526  title = {Towards a parametrization of river discharges into ocean general
1527   circulation models: a closure through energy conservation},
1528  journal = CD,
1529  year = {2008},
1530  volume = {31},  number = {7-8},
1531  pages = {891--908},
1532  doi = {10.1007/s00382-008-0416-4},
1533}
1534
1535@ARTICLE{Hsu1990,
1536  author = {Hsu, Yueh-Jiuan G. and Arakawa, Akio},
1537  title = {Numerical Modeling of the Atmosphere with an Isentropic Vertical Coordinate},
1538  journal = MWR,
1539  year = {1990},
1540  volume = {118},  number = {10},
1541  pages = {1933--1959},
1542}
1543
1544@ARTICLE{Huang_JPO93,
1545  author = {R.X. Huang},
1546  title = {Real freshwater flux as a natural boundary condition for the salinity
1547   balance and thermohaline circulation forced by evaporation and precipitation},
1548  journal = JPO,
1549  year = {1993},
1550  volume = {23},
1551  pages = {2428--2446}
1552}
1553
1554@TECHREPORT{Hunke2008,
1555  author = {E.C. Hunke and W.H. Lipscomb},
1556  title = {CICE: the Los Alamos sea ice model documentation and software user's manual,
1557        Version 4.0},
1558  institution = { Los Alamos National Laboratory, N.M.},
1559  publisher = {LA-CC-06-012, Los Alamos National Laboratory, N.M.},
1560  year = {2008}
1561}
1562
1563@TechReport{Hunter2006,
1564  Title                    = {Specification for Test Models of Ice Shelf Cavities},
1565  Author                   = {J. R. Hunter},
1566  Institution              = {Antarctic Climate \& Ecosystems Cooperative Research Centre Private Bag 80, Hobart, Tasmania 7001},
1567  Year                     = {2006},
1568}
1569
1570@TECHREPORT{TEOS10,
1571  author = {IOC and SCOR and IAPSO},
1572  title = {The international thermodynamic equation of seawater - 2010: Calculation and use of thermodynamic properties},
1573  institution = {Intergovernmental Oceanographic Commission},
1574  publisher = {Manuals and Guides No. 56, UNESCO (English)},
1575  year = {2010},
1576  pages = {196pp},
1577  url = {http://www.teos-10.org/pubs/TEOS-10_Manual.pdf}
1578}
1579
1580@ARTICLE{Iudicone_al_JPO08b,
1581  author = {D. Iudicone and G. Madec and B. Blanke and S. Speich},
1582  title = {The role of Southern Ocean surface forcings and mixing in the global conveyor},
1583  journal = JPO,
1584  year = {2008},
1585  volume = {38},
1586  pages = {1377--1400}
1587}
1588
1589@ARTICLE{Iudicone_al_JPO08a,
1590  author = {D. Iudicone and G. Madec and T. J. McDougall},
1591  title = {Diagnosing water transformations and the key role of light penetration},
1592  journal = JPO,
1593  year = {2008},
1594  volume = {38},
1595  pages = {1357--1376}
1596}
1597
1598@ARTICLE{Iudicone_al_JPO07,
1599  author = {D. Iudicone and K. Rodgers and R. Schopp and G. Madec},
1600  title = {An Exchange window for the Antarctic Intermediate Water Injection into the South Pacific},
1601  journal = JPO,
1602  year = {2007},
1603  volume = {37},
1604  pages = {31--49}
1605}
1606
1607@ARTICLE{Iudicone_al_JPO08c,
1608  author = {D. Iudicone and S. Speich and G. Madec and B. Blanke},
1609  title = {The global Conveyor Belt in a Southern Ocean perspective},
1610  journal = JPO,
1611  year = {2008},
1612  volume = {38},
1613  pages = {1401--1425}
1614}
1615
1616@ARTICLE{Izumo_al_CD10,
1617  author = {T. Izumo and S.Masson and J. Vialard and C. de Boyer Montegut and
1618   S. K. Behera and G. Madec and K. Takahashi and T. Yamagata},
1619  title = {Interannual variations of low-frequency Madden-Julian Oscillation in autral summer: Observations},
1620  journal = CD,
1621  year = {2010},
1622  volume = {35},  number = {4},
1623  pages = {669--683},
1624  doi = {10.1007/s00382-009-0655-z}
1625}
1626
1627@ARTICLE{JackMcD1995,
1628  author = {D. R. Jackett and T. J. McDougall},
1629  title = {Minimal adjustment of hydrographic data to achieve static stability},
1630  journal = JAOT,
1631  year = {1995},
1632  volume = {12},
1633  pages = {381--389}
1634}
1635
1636@article{Jackson_Rehmann_JPO2014,
1637   author = {P. R. Jackson and C. R. Rehmann},
1638   title = {Experiments on differential scalar mixing in turbulence in a sheared, stratified flow},
1639   journal = JPO,
1640   volume = {44},
1641   issn = {0022-3670},
1642   doi = {10.1175/JPO-D-14-0027.1},
1643   number = {10},
1644   year = {2014},
1645   pages = {2661--2680},
1646}
1647
1648@ARTICLE{Jayne_St_Laurent_GRL01,
1649  author = {S.R. Jayne and L.C. {St. Laurent}},
1650  title = {Parameterizing tidal disspiation over rough topography},
1651  journal = GRL,
1652  pages = {811--814}
1653}
1654
1655@ARTICLE{Jenkins1991,
1656  author = {A. Jenkins},
1657  title = {A one-dimensional model of ice shelf-ocean interaction},
1658  journal = JGR,
1659  year = {1991},
1660  volume = {96},  number = {C11},
1661  pages = {2298--2312}
1662}
1663
1664@ARTICLE{Jenkins2001,
1665  author = {A. Jenkins},
1666  title = {The Role of Meltwater Advection in the Formulation of Conservative Boundary Conditions at an Ice-Ocean Interface},
1667  journal = JPO,
1668  year = {2001},
1669  volume = {31},
1670  pages = {285--296}
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1756  year = {1989},
1757  editor = {Hawaiian winter workshop},
1758  month = {January 17-20},
1759  organization = {University of Hawaii at Manoa}
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1774  journal = CD,
1775  year = {2010},
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1780
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1804  journal = OD,
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1832year = "2012",
1833volume = "52–53", pages = "9--35",
1834issn = "1463-5003",
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1837
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1862           nord-occidentale. Cycle saisonnier et variabilit\'{e} m\'{e}so\'{e}chelle},
1863  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 207pp},
1864  year = {1996}
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1866
1867@ARTICLE{Levy_al_GRL01,
1868  author = {M. L\'{e}vy and A. Estubier and G Madec},
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1871  year = {2001},
1872  volume = {28}
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1874
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1877   G. Madec and S. Masson and T. Takahashi},
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1880  year = {2010},
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1891  year = {1999},
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1893  pages = {7--21}
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1945   \`{a} la diffusion turbulente dans un mod\`{e}le de circulation g\'{e}n\'{e}rale
1946   id\'{e}alis\'{e}e},
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1965   at eddy permitting resolution},
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2030   on tracer and dynamics},
2031  journal = JGR,
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2065
2066@TECHREPORT{Leonard_Rep88,
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2082
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2085  title = {Free surface and variable volume in the NEMO code},
2086  institution = {MERSEA MERSEA IP report WP09-CNRS-STR-03-1A, 47pp, available on the
2087   NEMO web site},
2088  year = {2007}
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2102   TITLE = {Statistical Models of Global Langmuir Mixing},
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2104   VOLUME = {113},
2105   ISSUE = {May},
2106   PAGES = {95--114},
2107   DOI = {10.1016/j.ocemod.2017.03.016}
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2128  author = {F. Lott and G. Madec},
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2131  institution = {LODYC, France, 36pp.},
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2136@ARTICLE{Lott_al_OM90,
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2141  volume = {88},
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2148   coupling physics},
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2159  year = {2008},
2160  author = {G. Madec}
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2162
2163@BOOK{Madec_HDR01,
2164  title = {Le Cycle des Masses d'Eau Oc\'{e}aniqueset sa variabilit\'{e} dans le Syst\'{e}me Climatique},
2165  year = {2001},
2166  author = {G. Madec},
2167  pages = {63pp.},
2168  series = {Habilitation \'{a} Diriger des Recherches, Universit\'{e} Pierre et Marie Curie}
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2170
2171@PHDTHESIS{Madec_PhD90,
2172  author = {G. Madec},
2173  title = {La formation d'eau profonde et son impact sur la circulation r\'{e}gionale
2174   en M\'{e}diterran\'{e}e Occidentale - une approche num\'{e}rique},
2175  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 194pp.},
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2177  month = {2 mai}
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2184   study},
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2186  year = {1991},
2187  volume = {15},
2188  pages = {301--332}
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2191@ARTICLE{Madec_al_JPO91,
2192  author = {G. Madec and M. Chartier and P. Delecluse and M. Cr\'{e}pon},
2193  title = {A three-dimensional numerical study of deep water formation in the Northwestern Mediterranean Sea .},
2194  journal = JPO,
2195  year = {1991},
2196  volume = {21},
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2199
2200@INBOOK{Madec_Crepon_Bk91,
2201  chapter = {Thermohaline-driven deep water formation in the Northwestern Mediterranean
2202   Sea},
2203  pages = {241--265},
2204  title = {Deep convection and deep water formation in the oceans},
2205  publisher = {Elsevier Oceanographic Series, P.C. Chu and J.C. Gascard (Eds.)},
2206  year = {1991},
2207  author = {G. Madec and M. Cr\'{e}pon}
2208}
2209
2210@ARTICLE{Madec1997,
2211  author = {G. Madec and P. Delecluse},
2212  title = {The OPA/ARPEGE and OPA/LMD Global Ocean-Atmosphere Coupled Model},
2213  journal = {Int. WOCE Newsletter},
2214  year = {1997},
2215  volume = {26},
2216  pages = {12--15}
2217}
2218
2219@TECHREPORT{Madec1998,
2220  author = {G. Madec and P. Delecluse and M. Imbard and C. Levy},
2221  title = {OPA 8 Ocean General Circulation Model - Reference Manual},
2222  institution = {LODYC/IPSL Note 11},
2223  year = {1998}
2224}
2225
2226@ARTICLE{Madec_Imbard_CD96,
2227  author = {G Madec and M Imbard},
2228  title = {A global ocean mesh to overcome the north pole singularity},
2229  journal = CD,
2230  year = {1996},
2231  volume = {12},
2232  pages = {381--388}
2233}
2234
2235@ARTICLE{Madec_al_JPO96,
2236  author = {G. Madec and F. Lott and P. Delecluse and M. Cr\'{e}pon},
2237  title = {Large-Scale Preconditioning of Deep-Water Formation in the Northwestern
2238   Mediterranean Sea},
2239  journal = JPO,
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2241  volume = {26},  number = {8},
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2248   in a multilevel OGCM},
2249  journal = OM,
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2253}
2254
2255@ARTICLE{Maes_al_CD98,
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2257  title = {Impact of westerly wind bursts on the warm pool of the TOGA-COARE
2258   domain in an OGCM},
2259  journal = CD,
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2264
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2266  author = {C. Maes and G. Madec and P. Delecluse},
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2268  journal = MWR,
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2305   C. Estournel and I. Pairaud and C. Ulses},
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2317TITLE = {NEMO-ICB (v1.0): interactive icebergs in the NEMO ocean model globally configured at eddy-permitting resolution},
2318JOURNAL = {Geoscientific Model Development},
2319VOLUME = {8},
2320YEAR = {2015},
2321NUMBER = {5},
2322PAGES = {1547--1562},
2323DOI = {10.5194/gmd-8-1547-2015}
2324}
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2350   et du transport de traceurs anthropog\'{e}niques},
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2805
2806@BOOK{Shchepetkin_McWilliams_Bk08,
2807  author = {A. F. Shchepetkin and J. C. McWilliams},
2808  title = {Handbook of Numerical Analysis, Vol. XIV: Computational Methods for the Ocean and the Atmosphere, pp 121-183},
2809  publisher = {P. G. Ciarlet, editor, R. Temam and J. Tribbia, guest eds., Elsevier Science},
2810  year = {2008},
2811  pages = {784}
2812}
2813
2814@ARTICLE{Shchepetkin_McWilliams_OM05,
2815  author = {A. F. Shchepetkin and J. C. McWilliams},
2816  title = {The regional oceanic modeling system (ROMS) - a split-explicit, free-surface,
2817   topography-following-coordinate oceanic modelr},
2818  journal = OM,
2819  year = {2005},
2820  volume = {9},  number = {4},
2821  pages = {347--404}
2822}
2823
2824@ARTICLE{Sacha2003,
2825  author = {A. F. Shchepetkin and J. C. McWilliams},
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2827   model with a nonaligned vertical coordinate},
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2831  pages = {3090},
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2833}
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2836  author = {A. F. Shchepetkin and J. J. O'Brien},
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2844@ARTICLE{Siddorn_Furner_OM12,
2845  author = {J. Siddorn and R. Furner},
2846  title = {An analytical stretching function that combines the best attributes of geopotential and terrain-following vertical coordinates},
2847  journal = OM,
2848  year = {2012},
2849  pages = {submitted},
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2853  author = {H. L. Simmons and S. R. Jayne and L. C. {St. Laurent} and A. J. Weaver},
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2857  pages = {245--263},
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2866  publisher = {Cambridge University Press, B. Galperin and S. A. Orszag (eds.)},
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2869@ARTICLE{Song_Haidvogel_JCP94,
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2911  year = {1992}
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2921}
2922
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2992  year   =   {2010},
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3008@ARTICLE{Thiem_Berntsen_OM06,
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3075  volume = {4},
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3077}
3078
3079@ARTICLE{Treguier_al_OD06,
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3081  and G. Madec and J.-M. Molines and T. Penduff and L. Czeschel and C. Böning},
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3084  journal = OD,
3085  year = {2006},
3086  volume = {56},
3087  pages = {568--580},
3088  doi = {10.1007/s10236-006-0069-y},
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3091@ARTICLE{Treguier1997,
3092  author = {A. M. Tr\'{e}guier and I. M. Held and V. D. Larichev},
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3095  year = {1997},
3096  volume = {27},  number = {4},
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3098}
3099
3100@ARTICLE{Tu_Tsuang_GRL05,
3101  title={{Cool-skin simulation by a one-column ocean model}},
3102  author={{C-Y}. Tu  and {B-J}. Tsuang},
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3105  volume={32},
3106  pages={L22602},
3107  doi = {10.1029/2005GL024252},
3108}
3109
3110@ARTICLE{Umlauf_Burchard_JMS03,
3111  author = {L. Umlauf and H. Burchard},
3112  title = {A generic length-scale equation for geophysical turbulence models},
3113  journal = JMS,
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3115  volume = {61},  number = {2},
3116  pages = {235--265}
3117}
3118
3119@ARTICLE{Umlauf_Burchard_CSR05,
3120  author = {L. Umlauf and H. Burchard},
3121  title = {Second-order turbulence closure models for geophysical boundary layers. A review of recent work},
3122  journal = JMS,
3123  year = {2005},
3124  volume = {25},
3125  pages = {795--827}
3126}
3127
3128@BOOK{UNESCO1983,
3129  title = {Algorithms for computation of fundamental property of sea water},
3130  publisher = {Techn. Paper in Mar. Sci, 44, UNESCO},
3131  year = {1983},
3132  author = {UNESCO}
3133}
3134
3135@TECHREPORT{OASIS2006,
3136  author = {S. Valcke},
3137  title = {OASIS3 User Guide (prism\_2-5)},
3138  institution = {PRISM Support Initiative Report No 3, CERFACS, Toulouse, France},
3139  year = {2006},
3140  pages = {64pp}
3141}
3142
3143@TECHREPORT{Valcke_al_Rep00,
3144  author = {S. Valcke and L. Terray and A. Piacentini },
3145  title = {The OASIS Coupled User Guide Version 2.4},
3146  institution = {CERFACS},
3147  year = {2000},
3148  number = {TR/CMGC/00-10}
3149}
3150
3151@ARTICLE{Vancoppenolle_al_OM09b,
3152  author = {M. Vancoppenolle and T. Fichefet and H. Goosse},
3153  title = {Simulating the mass balance and salinity of Arctic and Antarctic sea ice. 2.
3154     Importance of sea ice salinity variations},
3155  journal = OM,
3156  year = {2009},
3157  volume = {27},
3158  pages = {54--69}
3159}
3160
3161@book{Vallis06,
3162author = {Vallis, G. K.},
3163title = {Atmospheric and Oceanic Fluid Dynamics},
3164publisher = {Cambridge University Press},
3165address = {Cambridge, U.K.},
3166year = {2006},
3167pages = {745},
3168}
3169
3170@ARTICLE{Vancoppenolle_al_OM09a,
3171  author = {M. Vancoppenolle and T. Fichefet and H. Goosse and S. Bouillon and
3172   G. Madec and M. A. Morales Maqueda},
3173  title = {Simulating the mass balance and salinity of Arctic and Antarctic
3174   sea ice. 1. Model description and validation},
3175  journal = OM,
3176  year = {2009},
3177  volume = {27},
3178  pages = {33--53},
3179  doi = {10.1016/j.ocemod.2008.10.005},
3180}
3181
3182@ARTICLE{Vialard_al_JPO01,
3183  author = {J. Vialard and C. Menkes and J.-P. Boulanger and P. Delecluse and
3184   E. Guilyardi and M.J. McPhaden and G. Madec},
3185  title = {A Model Study of Oceanic Mechanisms Affecting Equatorial Pacific
3186   Sea Surface Temperature During the 1997-98 El Niño},
3187  journal = JPO,
3188  year = {2001},
3189  volume = {31},  number = {7},
3190  pages = {1649--1675}
3191}
3192
3193@ARTICLE{Warner_al_OM05,
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3197  year = {2005},
3198  volume = {8},
3199  pages = {81--113},
3200  doi = {10.1016/j.ocemod.2003.12.003},
3201}
3202
3203@ARTICLE{Weatherly_JMR84,
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3210}
3211
3212@ARTICLE{Weaver_Eby_JPO97,
3213  author = {A. J. Weaver and M. Eby},
3214  title = {On the numerical implementation of advection schemes for use in conjuction
3215   with various mixing parameterizations in the GFDL ocean model},
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3217  year = {1997},
3218  volume = {27}
3219}
3220
3221@ARTICLE{Webb_al_JAOT98,
3222  author = {D. J. Webb and B. A. de Cuevas and C. S. Richmond},
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3228}
3229
3230@ARTICLE{White_al_JCP09,
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3238}
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3254  year = {2001},
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3257}
3258
3259@ARTICLE{Williams_al_DAO09,
3260  author = {P.D. Williams and E. Guilyardi and G. Madec and S. Gualdi and E. Scoccimarro},
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3266  doi = {10.1016/j.dynatmoce.2009.02.001},
3267}
3268
3269@ARTICLE{Williams_al_GRL07,
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3277}
3278
3279@ARTICLE{Williams_al_CD06,
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3286}
3287
3288@ARTICLE{Zalesak_JCP79,
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3296@ARTICLE{Zhang_Endoh_JGR92,
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3304
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