source: NEMO/branches/2020/r4.0-HEAD_r12713_clem_dan_fixcpl/doc/NEMO_manual_state.txt @ 13279

Last change on this file since 13279 was 10569, checked in by nicolasmartin, 23 months ago

Add the current state of the NEMO manual at the root of the ./doc directory
Raw output of ./bin/manuals_checking.sh

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1¤ Missing namelist groups in NEMO manual
2namage namagrif namalb namc14_fcg namc14_sbc namc14_typ namc1d namc1d_dyndmp namc1d_uvd namcfc namcrs namdia namdrg namdrg_bot namdrg_top namdta_dyn namdyn namdyn_rdgrft namdyn_rhg namforcing namhsb namini namitd namlobdet namlobdom namlobnut namlobopt namlobphy namlobrat namlobsed namlobzoo nammpp namp4zlim namp4zmes namp4zmort namp4zprod namp4zzoo namp5zlim namp5zmes namp5zmort namp5zprod namp5zquota namp5zzoo nampar nampisatm nampisbio nampiscal nampisdmp nampisext nampisfer nampisice nampislig nampismass nampismod nampisopt nampispoc nampisrem nampissbc namsbc_blk namsbc_iif namthd namthd_da namthd_do namthd_pnd namthd_sal namthd_zdf namtra_eiv namtra_mle namtrc namtrc_adv namtrc_bc namtrc_bdy namtrc_dmp namtrc_dta namtrc_ice namtrc_ldf namtrc_rad namtrc_run namtrc_snk namtrc_trd nam_vvl namzdf_iwm
3
4¤ Vanished index entries in NEMO manual (\{hf,jp,key,mdl,ngn,nlst,np,rou}{...})
5chap_DYN.tex: key{dynspg\_exp} key{dynspg\_flt} key{dynspg\_ts} key{trddyn} key{trdvor} key{vvl} mdl{dynspg\_flt} mdl{zpsdhe} nlst{namsplit} np{ln\_bt\_nn\_auto} np{ln\_dynhpg\_djc} np{ln\_dynhpg\_imp} np{ln\_dynhpg\_isf} np{ln\_dynhpg\_prj} np{ln\_dynhpg\_sco} np{ln\_dynhpg\_vec} np{ln\_dynhpg\_zco} np{ln\_dynhpg\_zps} np{ln\_dynldf\_bilap} np{ln\_dynvor\_con} np{ln\_dynzad\_zts} np{ln\_traadv\_tvd\_zts} np{ln\_wd\_dl\_ramp} np{ln\_zdfexp} np{nn\_atfp} np{nn\_dynhpg\_rst} np{nn\_ice\_embd} np{nn\_zdfexp}
6introduction.tex:
7chap_model_basics_zstar.tex: key{dynspg\_exp} key{dynspg\_flt} key{dynspg\_ts} key{vvl} mdl{dynspg\_flt} np{rdtbt} np{rnu}
8chap_DIA.tex: key{diaar5} key{diadct} key{diaharm} key{diahth} key{diainstant} key{floats} key{IOM} key{iomput} key{mpp\_mpi} key{netcdf4} key{trdmld\_trc} key{trdtrc} key{vvl} ngn{namdia\_harm} np{init\_float\_ariane} np{iom\_put} np{jpnflnewflo} np{nb\_ana} np{nit000} np{nitend} np{nn\_debug} np{nn\_diacfl} np{tname} rou{iom\_rstput}
9annex_E.tex: key{traldf\_eiv}
10chap_TRA.tex: jp{lk\_vvl} key{trabbl} key{traTTT} key{zdfddm} mdl{traldf\_lap} ngn{namtra\_bbc} np{ln\_flxqsr} np{ln\_sco} np{ln\_traadv\_NONE} np{ln\_traldf} np{ln\_traldf\_grif} np{ln\_traldf\_NONE} np{ln\_tsd\_tradmp} np{ln\_useCT} np{ln\_zco} np{ln\_zdfexp} np{ln\_zps} np{nn\_chdta} np{nn\_eos} np{nn\_fct\_zts} np{nn\_geoflx\_cst} np{nn\_zdfexp} rou{traldf\_blp} rou{traldf\_lap}
11chap_DIU.tex:
12chap_ASM.tex: key{asminc} ngn{namasm}
13chap_ZDF.tex: key{dynspg\_exp} key{dynspg\_flt} key{dynspg\_ts} key{trabbl} key{vvl} key{zdf} key{zdfcst} key{zdfddm} key{zdfgls} key{zdfosm} key{zdfric} key{zdftke} key{zdftmx} key{zdftmx\_new} mdl{dynbfr} mdl{dynzdf\_imp} mdl{zdfbfr} mdl{zdfini} mdl{zdfkpp} ngn{namzdf\_ddm} ngn{namzdf\_tmx} ngn{namzdf\_tmx\_new} nlst{nambfr} nlst{namzdf_ddm} nlst{namzdf_tmx} nlst{namzdf_tmx_new} np{ln\_bfr2d} np{ln\_bfrimp} np{ln\_crban} np{ln\_tmx\_itf} np{ln\_tranpc} np{ln\_zdfexp} np{ln\_zdftmx\_itf} np{nn\_botfr} np{nn\_clo} np{nn\_ediff} np{nn\_ediss} np{nn\_tkebc\_bot} np{nn\_tkebc\_surf} np{rn\_avevd} np{rn\_bfeb2} np{rn\_bfri1} np{rn\_bfri2} np{rn\_bfri2\_max} np{rn\_bfrien} np{rn\_bfrz0} np{rn\_htmx} np{rn\_me} np{rn\_n2min} np{rn\_tfe} np{rn\_tfe\_itf} np{rn\_tfri2} np{rn\_tfri2\_max} np{rn\_tfrz0} rou{zdf\_bfr}
14chap_OBS.tex:
15chap_misc.tex: key{mpp\_mpi} key{nosignedzero} key{vectopt\_loop} np{iom\_get} np{jpjdta} np{jpjglo} np{nn\_bench} np{nn\_bit\_cmp} np{open\_ocean\_jstart}
16chap_LDF.tex: hf{dynldf\_cNd} hf{ldfdyn\_substitute} hf{ldftra\_substitute} hf{traldf\_c1d} hf{traldf\_cNd} key{dynldf\_c1d} key{dynldf\_c2d} key{dynldf\_c3d} key{traldf\_c1d} key{traldf\_c2d} key{traldf\_c3d} key{traldf\_cNd} key{traldf\_eiv} mdl{ldfdyn\_c2d} mdl{ldfeiv} mdl{traadv\_eiv} np{ln\_dynldf\_bilap} np{ln\_sco} np{nn\_eos} np{rn\_aeih\_0} np{rn\_aeiv} np{rn\_aeiv\_0} np{rn\_ahm0} np{rn\_ahmb0} np{rn\_aht0} np{rn\_ahtb0} np{traldf\_grif} np{traldf\_grif\_iso} rou{ldf\_dyn\_c2d\_orca} rou{ldfslp\_init}
17chap_LBC.tex: jp{jpreci} key{mpp\_mpi} np{jperio} np{jpiglo} np{jpindt} np{jpinft} np{jpjglo} np{jpjnob} np{nbdysegn} np{nn\_bdy\_jpk} np{nn\_msh} np{nn\_tra} rou{inimpp2}
18chap_DOM.tex: key{mpp\_mpi} ngn{namzgr} ngn{namzgr\_sco} nlst{namzgr} nlst{namzgr_sco} np{jperio} np{jpiglo} np{jpjglo} np{jpkglo} np{ln\_sco} np{ln\_sigcrit} np{ln\_s\_SF12} np{ln\_s\_SH94} np{ln\_tsd\_ini} np{ln\_zco} np{ln\_zps} np{nn\_bathy} np{nn\_msh} np{ppa0} np{ppa1} np{ppacr} np{ppdzmin} np{pphmax} np{ppkth} np{ppsur} np{rn\_alpha} np{rn\_bb} np{rn\_e3zps\_min} np{rn\_e3zps\_rat} np{rn\_hc} np{rn\_rmax} np{rn\_sbot\_max} np{rn\_sbot\_min} np{rn\_theta} np{rn\_zb\_a} np{rn\_zb\_b} np{rn\_zs} rou{istate\_t\_s}
19chap_conservation.tex: key{\_}
20annex_iso.tex: key{trabbl} key{traldf\_eiv} np{ln\_traldf\_eiv} np{ln\_traldf\_gdia}
21chap_time_domain.tex: np{ln\_zdfexp} np{nn\_dynhpg\_rst} np{nn\_zdfexp}
22annex_C.tex:
23chap_CONFIG.tex: key{agrif} key{c1d} key{dynspg\_ts} key{orca\_r12} key{orca\_r8} key{vvl} key{zdfgls} ngn{namusr\_def} np{jpiglo} np{jpizoom} np{jpjglo} np{jpjzoom} np{ln\_bench} np{nn\_GYRE} np{ORCA\_index}
24chap_SBC.tex: key{cice} key{coupled} key{cpl\_carbon\_cycle} key{lim3} key{mpp\_mpi} key{nemocice\_decomp} key{oasis3} key{pisces} key{top} key{vvl} mdl{sbcana} mdl{sbc\_ana\_gyre} mdl{sbcsas} ngn{namsbc\_ana} ngn{namsbc\_clio} ngn{namsbc\_core} nlst{namsbc_ana} nlst{namsbc_clio} nlst{namsbc_core} np{clim} np{ln\_ana} np{ln\_blk\_clio} np{ln\_blk\_core} np{ln\_clio} np{ln\_core} np{ln\_rnf\_temp} np{nn\_nit000} np{nn\_tau000} np{nn\_test\_box} np{nz\_rnf} np{rn\_emp0} np{rn\_fiscpl} np{rn\_qns0} np{rn\_qsr0} np{rn\_utau0} np{rn\_vtau0}
25chap_STO.tex:
26
27¤ Namelist parameters unfollowing naming conventions (^[cdlnr]n_* or uppercase somewhere)
28     nam_asminc: nitbkg nitdin nitiaustr nitiaufin niaufn salfixmin
29         nambbc: sn_qgh
30         nambdy: nb_bdy nb_jpk_bdy ctypebdy nbdyind nbdybeg nbdyend
31     nambdy_dta: bn_ssh bn_u2d bn_v2d bn_u3d bn_v3d bn_tem bn_sal
32    nambdy_tide: filtide
33        namberg: rn_LoW_ratio sn_icb
34     namc14_fcg: cfileco2 cfilec14 tyrc14_beg
35     namc14_sbc: xkwind xdicsur
36     namc14_typ: kc14typ rc14at pco2at rc14init
37     namc1d_uvd: sn_ucur sn_vcur
38         namcfc: ndate_beg nyear_res clname
39         namdia: iiceprt jiceprt
40    nam_diaharm: nit000_han nitend_han nstep_han tname(1) tname(2)
41         namdrg: ln_OFF
42     namdrg_bot: rn_Cd0 rn_Uc0 rn_Cdmax
43     namdrg_top: rn_Cd0 rn_Uc0 rn_Cdmax
44     namdta_dyn: sn_tem sn_sal sn_mld sn_emp sn_fmf sn_ice sn_qsr sn_wnd sn_uwd sn_vwd sn_wwd sn_avt sn_ubl sn_vbl
45         namdyn: ln_dynALL ln_dynRHGADV ln_dynADV1D ln_dynADV2D ln_landfast_L16
46     namdyn_adv: ln_dynadv_OFF
47     namdyn_ldf: ln_dynldf_OFF rn_Uv rn_Lv
48  namdyn_rdgrft: ln_str_H79
49     namdyn_rhg: ln_rhg_EVP ln_aEVP
50     namdyn_vor: ln_dynvor_enT ln_dynvor_eeT
51         namflo: jpnfl jpnnewflo
52     namforcing: nice_jules
53         namini: sn_hti sn_hts sn_ati sn_tsu sn_tmi sn_smi
54      namlobdet: taudn fdetlab
55      namlobdom: taudomn
56      namlobnut: akno3 aknh4 taunn psinut
57      namlobopt: xkg0 xkr0 xkgp xkrp xlg xlr rpig
58      namlobphy: tmumax rgamma fphylab tmminp aki
59      namlobrat: rcchl redf reddom
60      namlobsed: sedlam sedlostpoc vsed xhr
61      namlobzoo: rppz taus aks rpnaz rdnaz tauzn fzoolab fdbod tmminz
62         nammpp: jpni jpnj
63      namp4zlim: concnno3 concdno3 concnnh4 concdnh4 concnfer concdfer concbfe concbnh4 concbno3 xsizedia xsizephy xsizern xsizerd xksi1 xksi2 xkdoc qnfelim qdfelim caco3r oxymin
64      namp4zmes: part2 grazrat2 resrat2 mzrat2 xpref2d xpref2n xpref2z xpref2c xthresh2zoo xthresh2dia xthresh2phy xthresh2poc xthresh2 xkgraz2 epsher2 epsher2min sigma2 unass2 grazflux
65     namp4zmort: wchl wchld wchldm mprat mprat2
66     namp4zprod: pislopen pisloped xadap excretn excretd bresp chlcnm chlcdm chlcmin fecnm fecdm grosip
67      namp4zzoo: part grazrat resrat mzrat xprefc xprefn xprefd xthreshdia xthreshphy xthreshpoc xthresh xkgraz epsher epshermin sigma1 unass
68      namp5zlim: concnno3 concpno3 concdno3 concnnh4 concpnh4 concdnh4 concnpo4 concppo4 concdpo4 concnfer concpfer concdfer concbfe concbnh4 concbno3 concbpo4 xsizedia xsizephy xsizepic xsizern xsizerp xsizerd xksi1 xksi2 xkdoc caco3r oxymin
69      namp5zmes: part2 grazrat2 bmetexc2 resrat2 mzrat2 xpref2d xpref2p xpref2z xpref2m xpref2c xthresh2zoo xthresh2dia xthresh2phy xthresh2mes xthresh2poc xthresh2 xkgraz2 epsher2 epsher2min ssigma2 srespir2 unass2c unass2n unass2p grazflux
70     namp5zmort: wchln wchlp wchld wchldm mpratn mpratp mprat2
71     namp5zprod: pislopen pislopep pisloped excretn excretp excretd xadap bresp thetannm thetanpm thetandm chlcmin grosip
72    namp5zquota: qfnopt qfpopt qfdopt qnnmin qnnmax qpnmin qpnmax qnpmin qnpmax qppmin qppmax qndmin qndmax qpdmin qpdmax qfnmax qfpmax qfdmax
73      namp5zzoo: part grazrat bmetexc resrat mzrat xprefc xprefn xprefp xprefd xprefz xthreshdia xthreshphy xthreshpic xthreshzoo xthreshpoc xthresh xkgraz epsher epshermin ssigma srespir unassc unassn unassp
74         nampar: jpl nlay_i nlay_s
75      nampisatm: sn_patm sn_atmco2
76      nampisbio: nrdttrc wsbio xkmort ferat3 wsbio2 wsbio2max wsbio2scale ldocp ldocz lthet no3rat3 po4rat3
77      nampiscal: kdca nca
78      nampisext: atcco2 clname
79      nampisfer: xlam1 xlamdust ligand kfep
80      nampisice: sn_tri_dic sn_tri_doc sn_tri_tal sn_tri_oxy sn_tri_cal sn_tri_po4 sn_tri_poc sn_tri_goc sn_tri_bfe sn_tri_num sn_tri_sil sn_tri_dsi sn_tri_gsi sn_tri_phy sn_tri_dia sn_tri_zoo sn_tri_mes sn_tri_fer sn_tri_sfe sn_tri_dfe sn_tri_nfe sn_tri_nch sn_tri_dch sn_tri_no3 sn_tri_nh4
81      nampislig: rlgw rlig prlgw rlgs
82      nampisopt: sn_par parlux
83      nampispoc: xremip jcpoc rshape xremipc xremipn xremipp
84      nampisrem: xremik nitrif xsirem xsiremlab xsilab feratb xkferb xremikc xremikn xremikp
85      nampissbc: sn_dust sn_solub sn_riverdic sn_riverdoc sn_riverdin sn_riverdon sn_riverdip sn_riverdop sn_riverdsi sn_ndepo sn_ironsed sn_hydrofe sedfeinput distcoast dustsolub mfrac wdust icefeinput nitrfix diazolight concfediaz hratio lgw_rath
86     namsbc_apr: sn_apr
87     namsbc_blk: ln_NCAR ln_COARE_3p0 ln_COARE_3p5 ln_ECMWF ln_Cd_L12 ln_Cd_L15 sn_wndi sn_wndj sn_qsr sn_qlw sn_tair sn_humi sn_prec sn_snow sn_slp sn_tdif
88     namsbc_cpl: sn_snd_temp sn_snd_alb sn_snd_thick sn_snd_crt sn_snd_co2 sn_snd_crtw sn_snd_ifrac sn_snd_wlev sn_snd_cond sn_snd_thick1 sn_snd_mpnd sn_snd_sstfrz sn_snd_ttilyr sn_rcv_w10m sn_rcv_taumod sn_rcv_tau sn_rcv_dqnsdt sn_rcv_qsr sn_rcv_qns sn_rcv_emp sn_rcv_rnf sn_rcv_cal sn_rcv_co2 sn_rcv_hsig sn_rcv_iceflx sn_rcv_mslp sn_rcv_phioc sn_rcv_sdrfx sn_rcv_sdrfy sn_rcv_wper sn_rcv_wnum sn_rcv_wstrf sn_rcv_wdrag sn_rcv_ts_ice sn_rcv_isf sn_rcv_icb sn_rcv_tauwoc sn_rcv_tauw sn_rcv_wdrag
89     namsbc_flx: sn_utau sn_vtau sn_qtot sn_qsr sn_emp
90     namsbc_iif: sn_ice
91     namsbc_isf: sn_fwfisf sn_rnfisf sn_depmax_isf sn_depmin_isf sn_Leff_isf
92     namsbc_rnf: sn_rnf sn_cnf sn_s_rnf sn_t_rnf sn_dep_rnf
93     namsbc_sas: l_sasread sn_usp sn_vsp sn_tem sn_sal sn_ssh sn_e3t sn_frq
94     namsbc_ssr: sn_sst sn_sss
95    namsbc_wave: sn_cdg sn_usd sn_vsd sn_hsw sn_wmp sn_wfr sn_wnum sn_tauwoc sn_tauwx sn_tauwy
96         namthd: ln_icedH ln_icedA ln_icedO ln_icedS
97      namthd_do: rn_Cfraz
98     namthd_pnd: ln_pnd_H12 ln_pnd_CST
99     namthd_zdf: ln_zdf_BL99 ln_cndi_U64 ln_cndi_P07
100       nam_tide: rdttideramp clname(1)
101     namtra_adv: ln_traadv_OFF
102     namtra_eiv: rn_Ue rn_Le
103     namtra_ldf: ln_traldf_OFF rn_Ud rn_Ld
104     namtra_qsr: sn_chl
105         namtrc: jp_bgc jp_dia3d jp_dia2d
106     namtrc_adv: ln_trcadv_OFF
107     namtrc_dta: sn_trcdta(1)
108     namtrc_ldf: ln_trcldf_OFF
109     namtrc_snk: nitermax
110         namtrd: ln_KE_trd ln_PE_trd
111         namtsd: sn_tem sn_sal
112         namzdf: ln_zad_Aimp
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