source: NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.bib @ 11121

@article{         adcroft.campin_04,
  author        = {A. Adcroft and J.-M. Campin},
  title         = {Rescaled height coordinates for accurate representation of
                  free-surface flows in ocean circulation models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2004},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2003.09.003},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2003.09.003},
  pages         = {269--284},
  volume        = {7},
  number        = {3-4},
  issn          = {1463-5003}
}

@article{         arakawa.hsu_90,
  author        = {A. Arakawa and Y.-J. G. Hsu},
  title         = {Energy Conserving and Potential-Enstrophy Dissipating
                  Schemes for the Shallow Water Equations},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1990},
  month         = {oct},
  doi           = {10.1175/1520-0493(1990)118<1960:ecaped>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1990)118<1960:ecaped>2.0.co;2},
  pages         = {1960--1969},
  volume        = {118},
  number        = {10},
  issn          = {1520-0493}
}

@article{         arakawa.lamb_81,
  author        = {A. Arakawa and V. R. Lamb},
  title         = {A Potential Enstrophy and Energy Conserving Scheme for the
                  Shallow Water Equations},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1981},
  month         = {jan},
  doi           = {10.1175/1520-0493(1981)109<0018:apeaec>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1981)109<0018:apeaec>2.0.co;2},
  pages         = {18--36},
  volume        = {109},
  number        = {1},
  issn          = {1520-0493}
}

@article{         arakawa_66,
  author        = {A. Arakawa},
  title         = {Computational design for long-term numerical integration
                  of the equations of fluid motion: Two-dimensional
                  incompressible flow. Part {I}},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1966},
  month         = {Aug},
  doi           = {10.1016/0021-9991(66)90015-5},
  url           = {http://dx.doi.org/10.1016/0021-9991(66)90015-5},
  pages         = {119--143},
  volume        = {1},
  number        = {1},
  issn          = {0021-9991}
}

@article{         arbic.garner.ea_04,
  author        = {B. K. Arbic and S. T. Garner and R. W. Hallberg and H. L.
                  Simmons},
  title         = {The accuracy of surface elevations in forward global
                  barotropic and baroclinic tide models},
  journal       = {Deep Sea Research},
  publisher     = {Elsevier BV},
  year          = {2004},
  month         = {dec},
  doi           = {10.1016/j.dsr2.2004.09.014},
  url           = {http://dx.doi.org/10.1016/j.dsr2.2004.09.014},
  pages         = {3069--3101},
  volume        = {51},
  number        = {25-26},
  issn          = {0967-0645}
}

@article{         artale.iudicone.ea_02,
  author        = {V. Artale and D. Iudicone and R. Santoleri and V. Rupolo
                  and S. Marullo and F. {D'O}rtenzio},
  title         = {Role of surface fluxes in Ocean General Circulation Models
                  using satellite sea surface temperature: Validation of and
                  sensitivity to the forcing frequency of the Mediterranean
                  thermohaline circulation},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2002},
  doi           = {10.1029/2000jc000452},
  url           = {http://dx.doi.org/10.1029/2000JC000452},
  pages         = {2901--2924},
  volume        = {107},
  number        = {C8},
  issn          = {0148-0227}
}

@Article{         asselin_72,
  author        = "R. Asselin",
  title         = "Frequency Filter for Time Integrations",
  journal       = "Monthly Weather Review",
  issn          = "1520-0493",
  year          = "1972",
  volume        = "100",
  number        = "6",
  month         = "jun",
  pages         = "487--490",
  publisher     = "American Meteorological Society",
  doi           = "10.1175/1520-0493(1972)100<0487:fffti>2.3.co;2",
  url           = "http://dx.doi.org/10.1175/1520-0493(1972)100<0487:fffti>2.3.co;2",
}

@article{         axell_02,
  author        = {L. B. Axell},
  title         = {Wind-driven internal waves and Langmuir circulations in a
                  numerical ocean model of the southern Baltic Sea},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2002},
  doi           = {10.1029/2001jc000922},
  url           = {http://dx.doi.org/10.1029/2001JC000922},
  volume        = {107},
  number        = {C11},
  issn          = {0148-0227}
}

@article{         barnier.madec.ea_06,
  author        = {B. Barnier and G. Madec and T. Penduff and J.-M. Molines
                  and A.-M. Tr\'{e}guier and J. {Le Sommer} and A. Beckmann and
                  A. Biastoch and C. B{\"{o}}ning and J. Dengg and C. Derval
                  and E. Durand and S. Gulev and E. Remy and C. Talandier and
                  S. Theetten and M. Maltrud and J. McClean and B. {de Cuevas}},
  title         = {Impact of partial steps and momentum advection schemes in
                  a global ocean circulation model at eddy-permitting
                  resolution},
  journal       = {Ocean Dynamics},
  publisher     = {Springer Nature},
  year          = {2006},
  month         = {jun},
  doi           = {10.1007/s10236-006-0082-1},
  url           = {http://dx.doi.org/10.1007/s10236-006-0082-1},
  pages         = {543--567},
  volume        = {56},
  number        = {5-6},
  issn          = {1616-7228}
}

@article{         beckmann.doscher_97,
  author        = {A. Beckmann and R. D{\"{o}}scher},
  title         = {A method for improved representation of dense water
                  spreading over topography in geopotential-coordinate
                  models},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1997},
  month         = {apr},
  doi           = {10.1175/1520-0485(1997)027<0581:amfiro>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1997)027<0581:amfiro>2.0.co;2},
  pages         = {581--591},
  volume        = {27},
  number        = {4},
  issn          = {1520-0485}
}

@article{         beckmann.goosse_03,
  author        = {A. Beckmann and H. Goosse},
  title         = {A parameterization of ice shelf-ocean interaction for
                  climate models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2003},
  month         = {jan},
  doi           = {10.1016/s1463-5003(02)00019-7},
  url           = {http://dx.doi.org/10.1016/s1463-5003(02)00019-7},
  pages         = {157--170},
  volume        = {5},
  number        = {2},
  issn          = {1463-5003}
}

@article{         beckmann.haidvogel_93,
  author        = {A. Beckmann and D. B. Haidvogel},
  title         = {Numerical Simulation of Flow around a Tall Isolated
                  Seamount. Part {I}: Problem Formulation and Model
                  Accuracy},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1993},
  month         = {aug},
  doi           = {10.1175/1520-0485(1993)023<1736:nsofaa>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1993)023<1736:nsofaa>2.0.co;2},
  pages         = {1736--1753},
  volume        = {23},
  number        = {8},
  issn          = {1520-0485}
}

@article{         bernie.guilyardi.ea_07,
  author        = {D. J. Bernie and E. Guilyardi and G. Madec and J. M.
                  Slingo and S. J. Woolnough},
  title         = {Impact of resolving the diurnal cycle in an
                  ocean-atmosphere {GCM}. Part 1: a diurnally forced
                  {OGCM}},
  journal       = {Climate Dynamics},
  publisher     = {Springer Nature},
  year          = {2007},
  month         = {may},
  doi           = {10.1007/s00382-007-0249-6},
  url           = {http://dx.doi.org/10.1007/s00382-007-0249-6},
  pages         = {575--590},
  volume        = {29},
  number        = {6},
  issn          = {1432-0894}
}

@article{         bernie.woolnough.ea_05,
  author        = {D. J. Bernie and S. J. Woolnough and J. M. Slingo and E.
                  Guilyardi},
  title         = {Modeling diurnal and intraseasonal variability of the
                  ocean mixed layer},
  journal       = {Journal of Climate},
  publisher     = {American Meteorological Society},
  year          = {2005},
  month         = {apr},
  doi           = {10.1175/jcli3319.1},
  url           = {http://dx.doi.org/10.1175/jcli3319.1},
  pages         = {1190--1202},
  volume        = {18},
  number        = {8},
  issn          = {1520-0442}
}

@article{         blanke.delecluse_93,
  author        = {B. Blanke and P. Del\'{e}cluse},
  title         = {Variability of the tropical Atlantic Ocean simulated by a
                  General Circulation Model with two different mixed-layer
                  physics},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1993},
  month         = {jul},
  doi           = {10.1175/1520-0485(1993)023<1363:vottao>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1993)023<1363:vottao>2.0.co;2},
  pages         = {1363--1388},
  volume        = {23},
  number        = {7},
  issn          = {1520-0485}
}

@article{         blanke.raynaud_97,
  author        = {B. Blanke and S. Raynaud},
  title         = {Kinematics of the Pacific Equatorial Undercurrent: An
                  Eulerian and Lagrangian Approach from {GCM} Results},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1997},
  month         = {jun},
  doi           = {10.1175/1520-0485(1997)027<1038:kotpeu>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1997)027<1038:kotpeu>2.0.co;2},
  pages         = {1038--1053},
  volume        = {27},
  number        = {6},
  issn          = {1520-0485}
}

@article{         bloom.takacs.ea_96,
  author        = {S. C. Bloom and L. L. Takacs and A. M. Da Silva and D.
                  Ledvina},
  title         = {Data assimilation using incremental analysis updates},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1996},
  month         = {jun},
  doi           = {10.1175/1520-0493(1996)124<1256:dauiau>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1996)124<1256:dauiau>2.0.co;2},
  pages         = {1256--1271},
  volume        = {124},
  number        = {6},
  issn          = {1520-0493}
}

@Article{         bouffard_boegman_13,
  author        = "D. Bouffard and L. Boegman",
  title         = "A diapycnal diffusivity model for stratified environmental
                  flows",
  journal       = "Dynamics of Atmospheres and Oceans",
  issn          = "0377-0265",
  year          = "2013",
  volume        = "61-62",
  month         = "jun",
  pages         = "14--34",
  publisher     = "Elsevier BV",
  doi           = "10.1016/j.dynatmoce.2013.02.002",
  url           = "http://dx.doi.org/10.1016/j.dynatmoce.2013.02.002",
}

@article{         bougeault.lacarrere_89,
  author        = {P. Bougeault and P. Lacarrere},
  title         = {Parameterization of Orography-Induced Turbulence in a
                  Mesobeta--Scale Model},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1989},
  month         = {aug},
  doi           = {10.1175/1520-0493(1989)117<1872:pooiti>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1989)117<1872:pooiti>2.0.co;2},
  pages         = {1872--1890},
  volume        = {117},
  number        = {8},
  issn          = {1520-0493}
}

@article{         bouillon.maqueda.ea_09,
  author        = {S. Bouillon and M. A. Morales Maqueda and V. Legat and T.
                  Fichefet},
  title         = {An elastic-viscous-plastic sea ice model formulated on
                  Arakawa {B} and {C} grids},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2009.01.004},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2009.01.004},
  pages         = {174--184},
  volume        = {27},
  number        = {3-4},
  issn          = {1463-5003}
}

@article{         boyer-montegut.madec.ea_04,
  author        = {C. {de Boyer Mont\'{e}gut} and G. Madec and A. S. Fischer
                  and A. Lazar and D. Iudicone},
  title         = {Mixed layer depth over the global ocean: An examination of
                  profile data and a profile-based climatology},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2004},
  doi           = {10.1029/2004jc002378},
  url           = {http://dx.doi.org/10.1029/2004JC002378},
  pages         = {C12003},
  volume        = {109},
  number        = {C12},
  issn          = {0148-0227}
}

@article{         brankart.candille.ea_15,
  author        = {J.-M. Brankart and G. Candille and F. Garnier and C.
                  Calone and A. Melet and P.-A. Bouttier and P. Brasseur and
                  J. Verron},
  title         = {A generic approach to explicit simulation of uncertainty
                  in the {NEMO} ocean model},
  journal       = {Geoscientific Model Development},
  publisher     = {Copernicus GmbH},
  year          = {2015},
  month         = {may},
  doi           = {10.5194/gmd-8-1285-2015},
  url           = {http://dx.doi.org/10.5194/gmd-8-1285-2015},
  pages         = {1285--1297},
  volume        = {8},
  number        = {5},
  issn          = {1991-9603}
}

@article{         brankart_13,
  author        = {J.-M. Brankart},
  title         = {Impact of uncertainties in the horizontal density gradient
                  upon low resolution global ocean modelling},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2013},
  month         = {jun},
  doi           = {10.1016/j.ocemod.2013.02.004},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2013.02.004},
  pages         = {64--76},
  volume        = {66},
  issn          = {1463-5003}
}

@article{         breivik.bidlot.ea_16,
  author        = {{\O}. Breivik and J.-R. Bidlot and P. A. E. M. Janssen},
  title         = {A Stokes drift approximation based on the Phillips
                  spectrum},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2016},
  month         = {apr},
  doi           = {10.1016/j.ocemod.2016.01.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2016.01.005},
  pages         = {49--56},
  volume        = {100},
  issn          = {1463-5003}
}

@article{         breivik.janssen.ea_14,
  author        = {{\O}. Breivik and P. A. E. M. Janssen and J.-R. Bidlot},
  title         = {Approximate Stokes Drift Profiles in Deep Water},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2014},
  month         = {sep},
  doi           = {10.1175/jpo-d-14-0020.1},
  url           = {http://dx.doi.org/10.1175/JPO-D-14-0020.1},
  pages         = {2433--2445},
  volume        = {44},
  number        = {9},
  issn          = {1520-0485}
}

@article{         brodeau.barnier.ea_10,
  author        = {L. Brodeau and B. Barnier and A.-M. Tr\'{e}guier and T.
                  Penduff and S. Gulev},
  title         = {An {ERA40}-based atmospheric forcing for global ocean
                  circulation models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2010},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2009.10.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2009.10.005},
  pages         = {88--104},
  volume        = {31},
  number        = {3-4},
  issn          = {1463-5003}
}

@article{         brown.campana_78,
  author        = {J. A. Brown and K. A. Campana},
  title         = {An economical time-differencing system for numerical
                  weather prediction},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1978},
  month         = {aug},
  doi           = {10.1175/1520-0493(1978)106<1125:aetsfn>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1978)106<1125:aetsfn>2.0.co;2},
  pages         = {1125--1136},
  volume        = {106},
  number        = {8},
  issn          = {1520-0493}
}

@article{         bryan_97,
  author        = {K. Bryan},
  title         = {A numerical method for the study of the circulation of the
                  world ocean},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1997},
  month         = {Aug},
  doi           = {10.1006/jcph.1997.5699},
  url           = {http://dx.doi.org/10.1006/jcph.1997.5699},
  volume        = {135},
  number        = {2},
  pages         = {154--169},
  issn          = {0021-9991}
}

@article{         burchard_02,
  author        = {H. Burchard},
  title         = {Energy-conserving discretisation of turbulent shear and
                  buoyancy production},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2002},
  month         = {jun},
  doi           = {10.1016/s1463-5003(02)00009-4},
  url           = {http://dx.doi.org/10.1016/S1463-5003(02)00009-4},
  pages         = {347--361},
  volume        = {4},
  number        = {3-4},
  issn          = {1463-5003}
}

@article{         campin.adcroft.ea_04,
  author        = {J.-M. Campin and A. Adcroft and C. Hill and J. Marshall},
  title         = {Conservation of properties in a free-surface model},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2004},
  month         = {jan},
  doi           = {10.1016/s1463-5003(03)00009-x},
  url           = {http://dx.doi.org/10.1016/s1463-5003(03)00009-x},
  pages         = {221--244},
  volume        = {6},
  number        = {3-4},
  issn          = {1463-5003}
}

@article{         campin.goosse_99,
  author        = {J.-M. Campin and H. Goosse},
  title         = {Parameterization of density-driven downsloping flow for a
                  coarse-resolution ocean model in z-coordinate},
  journal       = {Tellus A},
  publisher     = {Informa UK Limited},
  year          = {1999},
  month         = {may},
  doi           = {10.1034/j.1600-0870.1999.t01-3-00006.x},
  url           = {http://dx.doi.org/10.1034/j.1600-0870.1999.t01-3-00006.x},
  pages         = {412--430},
  volume        = {51},
  number        = {3},
  issn          = {1600-0870}
}

@article{         campin.marshall.ea_08,
  author        = {J.-M. Campin and J. Marshall and D. Ferreira},
  title         = {Sea ice-ocean coupling using a rescaled vertical
                  coordinate \zstar},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2008},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2008.05.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.05.005},
  pages         = {1--14},
  volume        = {24},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         canuto.howard.ea_01,
  author        = {V. M. Canuto and A. Howard and Y. Cheng and M. S.
                  Dubovikov},
  title         = {Ocean turbulence. Part {I}: One-point closure
                  model-momentum and heat vertical diffusivities},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2001},
  month         = {jun},
  doi           = {10.1175/1520-0485(2001)031<1413:otpiop>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(2001)031<1413:otpiop>2.0.co;2},
  pages         = {1413--1426},
  volume        = {31},
  number        = {6},
  issn          = {1520-0485}
}

@article{         carrere.lyard_03,
  author        = {L. Carr\`{e}re and F. Lyard},
  title         = {Modeling the barotropic response of the global ocean to
                  atmospheric wind and pressure forcing - comparisons with
                  observations},
  journal       = {Geophysical Research Letters},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2003},
  month         = {mar},
  doi           = {10.1029/2002gl016473},
  url           = {http://dx.doi.org/10.1029/2002GL016473},
  volume        = {30},
  number        = {6},
  issn          = {0094-8276}
}

@techreport{      chanut_mersea05,
  author        = {J. Chanut},
  title         = {Nesting code for {NEMO}},
  year          = {2005},
  month         = {may},
  doi           = {10.5281/zenodo.3243409},
  url           = {https://doi.org/10.5281/zenodo.3243409},
  institution   = {European Union: Marine Environment and Security for the
                  European Area (MERSEA) Integrated Project},
  pages         = {25}
}

@article{         chassignet.smith.ea_03,
  author        = {E. P. Chassignet and L. T. Smith and G. R. Halliwell and
                  R. Bleck},
  title         = {North Atlantic Simulations with the Hybrid Coordinate
                  Ocean Model ({HYCOM}): Impact of the Vertical Coordinate
                  Choice, Reference Pressure, and Thermobaricity},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2003},
  month         = {dec},
  doi           = {10.1175/1520-0485(2003)033<2504:naswth>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(2003)033<2504:naswth>2.0.co;2},
  pages         = {2504--2526},
  volume        = {33},
  number        = {12},
  issn          = {1520-0485}
}

@article{         cox_87,
  author        = {M. D. Cox},
  title         = {Isopycnal diffusion in a z-coordinate ocean model},
  journal       = {Ocean Modelling},
  year          = {1987},
  month         = {jan},
  url           = {https://www.researchgate.net/publication/243768762_Isopycnal_diffusion_in_a_z-coordinate_ocean_model},
  pages         = {1--9},
  volume        = {74}
}

@article{         craig.banner_94,
  author        = {P. D. Craig and M. L. Banner},
  title         = {Modeling wave-enhanced turbulence in the ocean surface
                  layer},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1994},
  month         = {dec},
  doi           = {10.1175/1520-0485(1994)024<2546:mwetit>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1994)024<2546:mwetit>2.0.co;2},
  pages         = {2546--2559},
  volume        = {24},
  number        = {12},
  issn          = {1520-0485}
}

@article{         craik.leibovich_76,
  author        = {A. D. D. Craik and S. Leibovich},
  title         = {A rational model for Langmuir circulations},
  journal       = {Journal of Fluid Mechanics},
  publisher     = {Cambridge University Press (CUP)},
  year          = {1976},
  month         = {feb},
  doi           = {10.1017/s0022112076001420},
  url           = {http://dx.doi.org/10.1017/s0022112076001420},
  pages         = {401--426},
  volume        = {73},
  number        = {3},
  issn          = {1469-7645}
}

@article{         dalessio.abdella.ea_98,
  author        = {S. J. D. D'Alessio and K. Abdella and N. A. McFarlane},
  title         = {A new second-order turbulence closure scheme for modeling
                  the oceanic mixed layer},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {aug},
  doi           = {10.1175/1520-0485(1998)028<1624:ansotc>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1998)028<1624:ansotc>2.0.co;2},
  pages         = {1624--1641},
  volume        = {28},
  number        = {8},
  issn          = {1520-0485}
}

@book{            daley.barker_01,
  author        = {R. Daley and E. Barker},
  booktitle     = {{NAVDAS} Source Book 2001: {NRL} Atmospheric Variational
                  Data Assimilation System},
  publisher     = {Defense Technical Information Center},
  editor        = {Naval Research Laboratory, Marine Meteorology Division},
  year          = {2001},
  month         = {jul},
  doi           = {10.21236/ada396883},
  url           = {http://dx.doi.org/10.21236/ada396883},
  pages         = {163}
}

@article{         danabasoglu.ferrari.ea_08,
  author        = {G. Danabasoglu and R. Ferrari and J. C. McWilliams},
  title         = {Sensitivity of an Ocean General Circulation Model to a
                  parameterization of near-surface eddy fluxes},
  journal       = {Journal of Climate},
  publisher     = {American Meteorological Society},
  year          = {2008},
  month         = {mar},
  doi           = {10.1175/2007jcli1508.1},
  url           = {http://dx.doi.org/10.1175/2007JCLI1508.1},
  pages         = {1192--1208},
  volume        = {21},
  number        = {6},
  issn          = {1520-0442}
}

@article{         davies_76,
  author        = {H. C. Davies},
  title         = {A lateral boundary formulation for multi-level prediction
                  models},
  journal       = {Quarterly Journal of the Royal Meteorological Society},
  publisher     = {Wiley},
  year          = {1976},
  month         = {apr},
  doi           = {10.1002/qj.49710243210},
  url           = {http://dx.doi.org/10.1002/qj.49710243210},
  pages         = {405--418},
  volume        = {102},
  number        = {432},
  issn          = {0035-9009}
}

@article{         debreu.vouland.ea_08,
  author        = {L. Debreu and C. Vouland and E. Blayo},
  title         = {{AGRIF}: Adaptive Grid Refinement In Fortran},
  journal       = {Computers \& Geosciences},
  publisher     = {Elsevier BV},
  year          = {2008},
  month         = {jan},
  doi           = {10.1016/j.cageo.2007.01.009},
  url           = {http://dx.doi.org/10.1016/j.cageo.2007.01.009},
  pages         = {8--13},
  volume        = {34},
  number        = {1},
  issn          = {0098-3004}
}

@incollection{    delecluse.madec_99,
  author        = {P. Del\'{e}cluse and G. Madec},
  title         = {Ocean modelling and the role of the ocean in the climate
                  system},
  booktitle     = {Modeling the Earth's Climate and its Variability},
  publisher     = {North Holland},
  editor        = {W. R. Holland and S. Joussaume and F. David},
  year          = {1999},
  isbn          = {978-0-444-50338-1},
  series        = {Les Houches},
  volume        = {67},
  pages         = {237--313}
}

@phdthesis{       demange_14,
  author        = {J. Demange},
  title         = {Advection and gravity waves propagation numerical schemes
                  for oceanic circulation models},
  year          = {2014},
  pages         = {138},
  url           = {https://tel.archives-ouvertes.fr/tel-01104703/file/DEMANGE_2014_archivage.pdf},
  school        = {Grenoble University, France}
}

@article{         dobricic.pinardi.ea_07,
  author        = {S. Dobricic and N. Pinardi and M. Adani and M. Tonani and
                  C. Fratianni and A. Bonazzi and V. Fernandez},
  title         = {Daily oceanographic analyses by Mediterranean Forecasting
                  System at the basin scale},
  journal       = {Ocean Science},
  publisher     = {Copernicus GmbH},
  year          = {2007},
  month         = {mar},
  doi           = {10.5194/os-3-149-2007},
  url           = {http://dx.doi.org/10.5194/os-3-149-2007},
  pages         = {149--157},
  volume        = {3},
  number        = {1},
  issn          = {1812-0792}
}

@article{         drijfhout_94,
  author        = {S. S. Drijfhout},
  title         = {Heat transport by mesoscale eddies in an ocean circulation
                  Model},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1994},
  month         = {feb},
  doi           = {10.1175/1520-0485(1994)024<0353:htbmei>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1994)024<0353:htbmei>2.0.co;2},
  pages         = {353--369},
  volume        = {24},
  number        = {2},
  issn          = {1520-0485}
}

@article{         dukowicz.smith_94,
  author        = {J. K. Dukowicz and R. D. Smith},
  title         = {Implicit free-surface method for the Bryan-Cox-Semtner
                  ocean model},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1994},
  doi           = {10.1029/93jc03455},
  url           = {http://dx.doi.org/10.1029/93jc03455},
  pages         = {7991--8014},
  volume        = {99},
  number        = {C4},
  issn          = {0148-0227}
}

@article{         egbert.ray_00,
  author        = {G. D. Egbert and R. D. Ray},
  title         = {Significant dissipation of tidal energy in the deep ocean
                  inferred from satellite altimeter data},
  journal       = {Nature},
  publisher     = {Springer Nature},
  year          = {2000},
  month         = {jun},
  doi           = {10.1038/35015531},
  url           = {http://dx.doi.org/10.1038/35015531},
  pages         = {775--778},
  volume        = {405},
  number        = {6788},
  issn          = {1476-4687}
}

@article{         egbert.ray_01,
  author        = {G. D. Egbert and R. D. Ray},
  title         = {Estimates of {M2} tidal energy dissipation from
                  {TOPEX}/Poseidon altimeter data},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2001},
  month         = {oct},
  doi           = {10.1029/2000jc000699},
  url           = {http://dx.doi.org/10.1029/2000jc000699},
  pages         = {22475--22502},
  volume        = {106},
  number        = {C10},
  issn          = {0148-0227}
}

@article{         eiseman.stone_80,
  author        = {P. R. Eiseman and A. P. Stone},
  title         = {Conservation laws of fluid dynamics - {A} survey},
  journal       = {SIAM Review},
  publisher     = {Society for Industrial & Applied Mathematics (SIAM)},
  year          = {1980},
  month         = {jan},
  doi           = {10.1137/1022002},
  url           = {http://dx.doi.org/10.1137/1022002},
  pages         = {12--27},
  volume        = {22},
  number        = {1},
  issn          = {1095-7200}
}

@article{         emile-geay.madec_09,
  author        = {J. Emile-Geay and G. Madec},
  title         = {Geothermal heating, diapycnal mixing and the abyssal
                  circulation},
  journal       = {Ocean Science},
  publisher     = {Copernicus GmbH},
  year          = {2009},
  month         = {jun},
  doi           = {10.5194/os-5-203-2009},
  url           = {http://dx.doi.org/10.5194/os-5-203-2009},
  pages         = {203--217},
  volume        = {5},
  number        = {2},
  issn          = {1812-0792}
}

@article{         engedahl_95,
  author        = {H. Engedahl},
  title         = {Use of the flow relaxation scheme in a three-dimensional
                  baroclinic ocean model with realistic topography},
  journal       = {Tellus A},
  publisher     = {Informa UK Limited},
  year          = {1995},
  month         = {jan},
  doi           = {10.3402/tellusa.v47i3.11523},
  url           = {http://dx.doi.org/10.3402/tellusa.v47i3.11523},
  pages         = {365--382},
  volume        = {47},
  number        = {3},
  issn          = {1600-0870}
}

@phdthesis{       farge-coulombier_87,
  author        = {M. {Farge Coulombier}},
  title         = {Dynamique non-lin\'{e}aire des ondes et des tourbillons
                  dans les \'{e}quations de Saint-Venant},
  year          = {1987},
  pages         = {353},
  url           = {http://www.theses.fr/1987PA066365},
  school        = {Paris VI University, France}
}

@article{         farrow.stevens_95,
  author        = {D. E. Farrow and D. P. Stevens},
  title         = {A new tracer advection scheme for Bryan and Cox type Ocean
                  General Circulation Models},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1995},
  month         = {jul},
  doi           = {10.1175/1520-0485(1995)025<1731:antasf>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1995)025<1731:antasf>2.0.co;2},
  pages         = {1731--1741},
  volume        = {25},
  number        = {7},
  issn          = {1520-0485}
}

@article{         flather_94,
  author        = {R. A. Flather},
  title         = {A storm surge prediction model for the northern Bay of
                  Bengal with application to the cyclone disaster in April
                  1991},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1994},
  month         = {jan},
  doi           = {10.1175/1520-0485(1994)024<0172:asspmf>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1994)024<0172:asspmf>2.0.co;2},
  pages         = {172--190},
  volume        = {24},
  number        = {1},
  issn          = {1520-0485}
}

@book{            fofonoff.millard_83,
  author        = {N P. Fofonoff and R. C. Millard},
  booktitle     = {Algorithms for computation of fundamental properties of
                  seawater},
  publisher     = {UNESCO},
  editor        = {UNESCO/ICES/SCOR/IAPSO},
  year          = {1983},
  url           = {https://unesdoc.unesco.org/ark:/48223/pf0000059832.locale=en},
  series        = {Technical Paper in Marine Science},
  pages         = {53},
  volume        = {44}
}

@article{         galperin.kantha.ea_88,
  author        = {B. Galperin and L. H. Kantha and S. Hassid and A. Rosati},
  title         = {A quasi-equilibrium turbulent energy model for geophysical
                  flows},
  journal       = {Journal of the Atmospheric Sciences},
  publisher     = {American Meteorological Society},
  year          = {1988},
  month         = {jan},
  doi           = {10.1175/1520-0469(1988)045<0055:aqetem>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0469(1988)045<0055:aqetem>2.0.co;2},
  pages         = {55--62},
  volume        = {45},
  number        = {1},
  issn          = {1520-0469}
}

@article{         gargett_84,
  author        = {A. E. Gargett},
  title         = {Vertical eddy diffusivity in the ocean interior},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {1984},
  month         = {may},
  doi           = {10.1357/002224084788502756},
  url           = {http://dx.doi.org/10.1357/002224084788502756},
  pages         = {359--393},
  volume        = {42},
  number        = {2},
  issn          = {1543-9542}
}

@article{         gaspar.gregoris.ea_90,
  author        = {P. Gaspar and Y. Gr{\'e}goris and J.-M. Lefevre},
  title         = {A simple eddy kinetic energy model for simulations of the
                  oceanic vertical mixing: Tests at station Papa and
                  long-term upper ocean study site},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1990},
  doi           = {10.1029/jc095ic09p16179},
  url           = {http://dx.doi.org/10.1029/jc095ic09p16179},
  pages         = {16179},
  volume        = {95},
  number        = {C9},
  issn          = {0148-0227}
}

@article{         gent.mcwilliams_90,
  author        = {P. R. Gent and J. C. McWilliams},
  title         = {Isopycnal Mixing in Ocean Circulation Models},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1990},
  month         = {jan},
  doi           = {10.1175/1520-0485(1990)020<0150:imiocm>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1990)020<0150:imiocm>2.0.co;2},
  pages         = {150--155},
  volume        = {20},
  number        = {1},
  issn          = {1520-0485}
}

@article{         gentemann.minnett.ea_09,
  author        = {C. L. Gentemann and P. J. Minnett and B. Ward},
  title         = {Profiles of Ocean Surface Heating ({POSH}): {A} new model
                  of upper ocean diurnal warming},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2009},
  month         = {jul},
  doi           = {10.1029/2008jc004825},
  url           = {http://dx.doi.org/10.1029/2008JC004825},
  pages         = {C07017},
  volume        = {114},
  number        = {C7},
  issn          = {0148-0227}
}

@article{         gerdes.koberle_91,
  author        = {R. Gerdes and C. K{\"{o}}berle and J. Willebrand},
  title         = {The influence of numerical advection schemes on the
                  results of Ocean General Circulation Models},
  journal       = {Climate Dynamics},
  publisher     = {Springer Nature},
  year          = {1991},
  month         = {jun},
  doi           = {10.1007/bf00210006},
  url           = {http://dx.doi.org/10.1007/BF00210006},
  pages         = {211--226},
  volume        = {5},
  number        = {4},
  issn          = {1432-0894}
}

@article{         gerdes_93,
  author        = {R. Gerdes},
  title         = {A primitive equation ocean circulation model using a
                  general vertical coordinate transformation: 1. Description
                  and testing of the model},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1993},
  doi           = {10.1029/93jc00760},
  url           = {http://dx.doi.org/10.1029/93jc00760},
  pages         = {14683--14701},
  volume        = {98},
  number        = {C8},
  issn          = {0148-0227}
}

@article{         gerdes_93*1,
  author        = {R. Gerdes},
  title         = {A primitive equation ocean circulation model using a
                  general vertical coordinate transformation: 2. Application
                  to an overflow problem},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1993},
  doi           = {10.1029/93jc00788},
  url           = {http://dx.doi.org/10.1029/93jc00788},
  pages         = {14703--14726},
  volume        = {98},
  number        = {C8},
  issn          = {0148-0227}
}

@techreport{      gibson_86,
  author        = {J. K. Gibson},
  title         = {Standards for software development and maintenance},
  series        = {ECMWF Technical Memoranda},
  year          = {1986},
  month         = {aug},
  doi           = {10.21957/gi113q4gn},
  url           = {https://www.ecmwf.int/node/9565},
  institution   = {ECMWF Operations Department; Reading, United Kingdom},
  pages         = {21},
  number        = {120}
}

@book{            gill_82,
  author        = {A. E. Gill},
  booktitle     = {Atmosphere-Ocean Dynamics},
  publisher     = {Elsevier},
  issn          = {0074-6142},
  year          = {1982},
  month         = {nov},
  doi           = {10.1016/s0074-6142(08)x6002-4},
  url           = {http://dx.doi.org/10.1016/s0074-6142(08)x6002-4},
  isbn          = {978-0-12-283522-3},
  series        = {International Geophysics},
  pages         = {662},
  volume        = {30}
}

@Article{         goff_10,
  author        = "J. A. Goff",
  title         = "Global prediction of abyssal hill root-mean-square heights
                  from small-scale altimetric gravity variability",
  journal       = "Journal of Geophysical Research",
  issn          = "0148-0227",
  year          = "2010",
  volume        = "115",
  number        = "B12",
  month         = "dec",
  pages         = "B12104",
  publisher     = "American Geophysical Union (AGU)",
  doi           = "10.1029/2010jb007867",
  url           = "http://dx.doi.org/10.1029/2010JB007867",
}

@article{         goosse.deleersnijder.ea_99,
  author        = {H. Goosse and E. Deleersnijder and T. Fichefet and M. H.
                  England},
  title         = {Sensitivity of a global coupled ocean-sea ice model to the
                  parameterization of vertical mixing},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1999},
  month         = {jun},
  doi           = {10.1029/1999jc900099},
  url           = {http://dx.doi.org/10.1029/1999jc900099},
  pages         = {13681--13695},
  volume        = {104},
  number        = {C6},
  issn          = {0148-0227}
}

@article{         graham.mcdougall_13,
  author        = {F. S. Graham and T. J. McDougall},
  title         = {Quantifying the nonconservative production of conservative
                  temperature, potential temperature, and entropy},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2013},
  month         = {may},
  doi           = {10.1175/jpo-d-11-0188.1},
  url           = {http://dx.doi.org/10.1175/JPO-D-11-0188.1},
  pages         = {838--862},
  volume        = {43},
  number        = {5},
  issn          = {1520-0485}
}

@article{         greatbatch_94,
  author        = {R. J. Greatbatch},
  title         = {A note on the representation of steric sea level in models
                  that conserve volume rather than mass},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1994},
  doi           = {10.1029/94jc00847},
  url           = {http://dx.doi.org/10.1029/94jc00847},
  pages         = {12767--12771},
  volume        = {99},
  number        = {C6},
  issn          = {0148-0227}
}

@article{         griffies.biastoch.ea_09,
  author        = {S. M. Griffies and A. Biastoch and C. B{\"{o}}ning and F.
                  Bryan and G. Danabasoglu and E. P. Chassignet and M. H.
                  England and R. Gerdes and H. Haak and R. W. Hallberg and W.
                  Hazeleger and J. Jungclaus and W. G. Large and G. Madec and
                  A. Pirani and B. L. Samuels and M. Scheinert and A. Sen
                  Gupta and C. A. Severijns and H. L. Simmons and A.-M.
                  Tr\'{e}guier and M. Winton and S. Yeager and J. Yin},
  title         = {Coordinated Ocean-ice Reference Experiments ({CORE}s)},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2008.08.007},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.08.007},
  pages         = {1--46},
  volume        = {26},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         griffies.gnanadesikan.ea_98,
  author        = {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski
                  and V. D. Larichev and J. K. Dukowicz and R. D. Smith},
  title         = {Isoneutral Diffusion in a z-coordinate Ocean Model},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {may},
  doi           = {10.1175/1520-0485(1998)028<0805:idiazc>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1998)028<0805:idiazc>2.0.co;2},
  pages         = {805--830},
  volume        = {28},
  number        = {5},
  issn          = {1520-0485}
}

@article{         griffies.pacanowski.ea_01,
  author        = {S. M. Griffies and R. C. Pacanowski and M. Schmidt and V.
                  Balaji},
  title         = {Tracer Conservation with an Explicit Free Surface Method
                  for z-coordinate Ocean Models},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {2001},
  month         = {may},
  doi           = {10.1175/1520-0493(2001)129<1081:tcwaef>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(2001)129<1081:tcwaef>2.0.co;2},
  pages         = {1081--1098},
  volume        = {129},
  number        = {5},
  issn          = {1520-0493}
}

@book{            griffies_04,
  author        = {S. M. Griffies},
  booktitle     = {Fundamentals of ocean climate models},
  publisher     = {Princeton University Press},
  year          = {2004},
  month         = {dec},
  doi           = {10.2307/j.ctv301gzg},
  url           = {http://dx.doi.org/10.2307/j.ctv301gzg},
  pages         = {434},
  isbn          = {978-0-691-18712-9}
}

@article{         griffies_98,
  author        = {S. M. Griffies},
  title         = {The Gent-McWilliams skew-flux},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {may},
  doi           = {10.1175/1520-0485(1998)028<0831:tgmsf>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1998)028<0831:tgmsf>2.0.co;2},
  pages         = {831--841},
  volume        = {28},
  number        = {5},
  issn          = {1520-0485}
}

@article{         guilyardi.madec.ea_01,
  author        = {E. Guilyardi and G. Madec and L. Terray},
  title         = {The role of lateral ocean physics in the upper ocean
                  thermal balance of a coupled ocean-atmosphere {GCM}},
  journal       = {Climate Dynamics},
  publisher     = {Springer Science and Business Media LLC},
  year          = {2001},
  month         = {may},
  doi           = {10.1007/pl00007930},
  url           = {http://dx.doi.org/10.1007/pl00007930},
  pages         = {589--599},
  volume        = {17},
  number        = {8},
  issn          = {0930-7575}
}

@article{         haney_91,
  author        = {R. L. Haney},
  title         = {On the Pressure Gradient Force over Steep Topography in
                  Sigma Coordinate Ocean Models},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1991},
  month         = {apr},
  doi           = {10.1175/1520-0485(1991)021<0610:otpgfo>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1991)021<0610:otpgfo>2.0.co;2},
  pages         = {610--619},
  volume        = {21},
  number        = {4},
  issn          = {1520-0485}
}

@article{         hazeleger.drijfhout_00,
  author        = {W. Hazeleger and S. S. Drijfhout},
  title         = {A model study on internally generated variability in
                  subtropical mode water formation},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2000},
  month         = {jun},
  doi           = {10.1029/2000jc900041},
  url           = {http://dx.doi.org/10.1029/2000jc900041},
  pages         = {13965--13979},
  volume        = {105},
  number        = {C6},
  issn          = {0148-0227}
}

@article{         hazeleger.drijfhout_00*1,
  author        = {W. Hazeleger and S. S. Drijfhout},
  title         = {Eddy subduction in a model of the subtropical gyre},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2000},
  month         = {apr},
  doi           = {10.1175/1520-0485(2000)030<0677:esiamo>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(2000)030<0677:esiamo>2.0.co;2},
  pages         = {677--695},
  volume        = {30},
  number        = {4},
  issn          = {1520-0485}
}

@article{         hazeleger.drijfhout_98,
  author        = {W. Hazeleger and S. S. Drijfhout},
  title         = {Mode water variability in a model of the subtropical gyre:
                  response to anomalous forcing},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {feb},
  doi           = {10.1175/1520-0485(1998)028<0266:mwviam>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1998)028<0266:mwviam>2.0.co;2},
  pages         = {266--288},
  volume        = {28},
  number        = {2},
  issn          = {1520-0485}
}

@article{         hazeleger.drijfhout_99,
  author        = {W. Hazeleger and S. S. Drijfhout},
  title         = {Stochastically forced mode water variability},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1999},
  month         = {aug},
  doi           = {10.1175/1520-0485(1999)029<1772:sfmwv>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1999)029<1772:sfmwv>2.0.co;2},
  pages         = {1772--1786},
  volume        = {29},
  number        = {8},
  issn          = {1520-0485}
}

@article{         he.ding_01,
  author        = {Y. He and C. H. Q. Ding},
  title         = {Using accurate arithmetics to improve numerical
                  reproducibility and stability in parallel applications},
  journal       = {The Journal of Supercomputing},
  publisher     = {Springer Nature},
  year          = {2001},
  doi           = {10.1023/a:1008153532043},
  url           = {http://dx.doi.org/10.1023/A:1008153532043},
  pages         = {259--277},
  volume        = {18},
  number        = {3},
  issn          = {0920-8542}
}

@article{         hirt.amsden.ea_74,
  author        = {C. W. Hirt and A. A. Amsden and J. L. Cook},
  title         = {An arbitrary Lagrangian-Eulerian computing method for all
                  flow speeds},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1974},
  month         = {mar},
  doi           = {10.1016/0021-9991(74)90051-5},
  url           = {http://dx.doi.org/10.1016/0021-9991(74)90051-5},
  pages         = {227--253},
  volume        = {14},
  number        = {3},
  issn          = {0021-9991}
}

@article{         hofmeister.burchard.ea_10,
  author        = {R. Hofmeister and H. Burchard and J.-M. Beckers},
  title         = {Non-uniform adaptive vertical grids for 3{D} numerical
                  ocean models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2010},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2009.12.003},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2009.12.003},
  pages         = {70--86},
  volume        = {33},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         holland.jenkins_99,
  author        = {D. M. Holland and A. Jenkins},
  title         = {Modeling thermodynamic ice-ocean interactions at the
                  base of an ice shelf},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1999},
  month         = {aug},
  doi           = {10.1175/1520-0485(1999)029<1787:mtioia>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1999)029<1787:mtioia>2.0.co;2},
  pages         = {1787--1800},
  volume        = {29},
  number        = {8},
  issn          = {1520-0485}
}

@techreport{      hunter_06,
  author        = {J. R. Hunter},
  title         = {Specification for Test Models of Ice Shelf Cavities},
  year          = {2006},
  month         = {jun},
  url           = {http://staff.acecrc.org.au/~bkgalton/ISOMIP/test_cavities.pdf},
  institution   = {Antarctic Climate \& Ecosystems Cooperative Research
                  Centre},
  pages         = {17},
  number        = {7}
}

@article{         jackson.rehmann_14,
  author        = {P. R. Jackson and C. R. Rehmann},
  title         = {Experiments on differential scalar mixing in turbulence in
                  a sheared, stratified flow},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2014},
  month         = {oct},
  doi           = {10.1175/jpo-d-14-0027.1},
  url           = {http://dx.doi.org/10.1175/JPO-D-14-0027.1},
  pages         = {2661--2680},
  volume        = {44},
  number        = {10},
  issn          = {1520-0485}
}

@techreport{      janssen.breivik.ea_13,
  author        = {P. A. E. M. Janssen and {\O}. Breivik and K. Mogensen and
                  F. Vitart and M. Alonso-Balmaseda and J.-R. Bidlot and S.
                  Keeley and M. Leutbecher and L. Magnusson and F. Molteni},
  title         = {Air-sea interaction and surface waves},
  year          = {2013},
  month         = {nov},
  doi           = {10.21957/0kg73joh},
  url           = {https://www.ecmwf.int/node/10238},
  pages         = {36},
  volume        = {712},
  series        = {ECMWF Technical Memoranda},
  institution   = {ECMWF Research Departement; Reading, United Kingdom}
}

@article{         jenkins.nicholls.ea_10,
  author        = {A. Jenkins and K. W. Nicholls and H. F. J. Corr},
  title         = {Observation and parameterization of ablation at the base
                  of Ronne Ice Shelf, Antarctica},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2010},
  month         = {oct},
  doi           = {10.1175/2010jpo4317.1},
  url           = {http://dx.doi.org/10.1175/2010jpo4317.1},
  pages         = {2298--2312},
  volume        = {40},
  number        = {10},
  issn          = {1520-0485}
}

@article{         jenkins_91,
  author        = {A. Jenkins},
  title         = {A one-dimensional model of ice shelf-ocean interaction},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1991},
  doi           = {10.1029/91jc01842},
  url           = {http://dx.doi.org/10.1029/91jc01842},
  pages         = {20671--20677},
  volume        = {96},
  number        = {C11},
  issn          = {0148-0227}
}

@article{         kantha.carniel_03,
  author        = {L. Kantha and S. Carniel},
  title         = {Comments on ``{A} generic length-scale equation for
                  geophysical turbulence models'' by {L}. Umlauf and {H}.
                  Burchard},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {2003},
  month         = {sep},
  doi           = {10.1357/002224003771816007},
  url           = {http://dx.doi.org/10.1357/002224003771816007},
  pages         = {693--702},
  volume        = {61},
  number        = {5},
  issn          = {1543-9542}
}

@article{         kantha.clayson_94,
  author        = {L. H. Kantha and C. A. Clayson},
  title         = {An improved mixed layer model for geophysical
                  applications},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1994},
  doi           = {10.1029/94jc02257},
  url           = {http://dx.doi.org/10.1029/94jc02257},
  pages         = {25235--25266},
  volume        = {99},
  number        = {C12},
  issn          = {0148-0227}
}

@article{         kasahara_74,
  author        = {A. Kasahara},
  title         = {Various vertical coordinate systems used for numerical
                  weather prediction},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1974},
  month         = {jul},
  doi           = {10.1175/1520-0493(1974)102<0509:vvcsuf>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1974)102<0509:vvcsuf>2.0.co;2},
  pages         = {509--522},
  volume        = {102},
  number        = {7},
  issn          = {1520-0493}
}

@article{         killworth.stainforth.ea_91,
  author        = {P. D. Killworth and D. J. Webb and D. Stainforth and S. M.
                  Paterson},
  title         = {The development of a free-surface Bryan-Cox-Semtner
                  ocean model},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1991},
  month         = {sep},
  doi           = {10.1175/1520-0485(1991)021<1333:tdoafs>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1991)021<1333:tdoafs>2.0.co;2},
  pages         = {1333--1348},
  volume        = {21},
  number        = {9},
  issn          = {1520-0485}
}

@inproceedings{   killworth_89,
  author        = {P. D. Killworth},
  title         = {On the parameterization of deep convection in ocean
                  models},
  booktitle     = {Parameterization of small-scale processes},
  publisher     = {Hawaii Institute of Geophysics},
  editor        = {P. Muller and D. Henderson},
  year          = {1989},
  month         = {jan},
  url           = {http://www.soest.hawaii.edu/PubServices/1989pdfs/Killworth.pdf},
  pages         = {59--74}
}

@article{         killworth_92,
  author        = {P. D. Killworth},
  title         = {An equivalent-barotropic mode in the fine resolution
                  Antarctic model},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1992},
  month         = {nov},
  doi           = {10.1175/1520-0485(1992)022<1379:aebmit>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1992)022<1379:aebmit>2.0.co;2},
  pages         = {1379--1387},
  volume        = {22},
  number        = {11},
  issn          = {1520-0485}
}

@article{         koch-larrouy.lengaigne.ea_10,
  author        = {A. Koch-Larrouy and M. Lengaigne and P. Terray and G.
                  Madec and S. Masson},
  title         = {Tidal mixing in the Indonesian Seas and its effect on the
                  tropical climate system},
  journal       = {Climate Dynamics},
  publisher     = {Springer Nature},
  year          = {2010},
  month         = {aug},
  doi           = {10.1007/s00382-009-0642-4},
  url           = {http://dx.doi.org/10.1007/s00382-009-0642-4},
  pages         = {891--904},
  volume        = {34},
  number        = {6},
  issn          = {1432-0894}
}

@article{         koch-larrouy.madec.ea_07,
  author        = {A. Koch-Larrouy and G. Madec and P. Bouruet-Aubertot and
                  T. Gerkema and L. Bessi\`{e}res and R. Molcard},
  title         = {On the transformation of Pacific water into Indonesian
                  ThroughFlow water by internal tidal mixing},
  journal       = {Geophysical Research Letters},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2007},
  month         = {feb},
  doi           = {10.1029/2006gl028405},
  url           = {http://dx.doi.org/10.1029/2006GL028405},
  pages         = {L04604},
  volume        = {34},
  number        = {4},
  issn          = {0094-8276}
}

@article{         koch-larrouy.madec.ea_08,
  author        = {A. Koch-Larrouy and G. Madec and B. Blanke and R.
                  Molcard},
  title         = {Water mass transformation along the Indonesian ThroughFlow
                  in an {OGCM}},
  journal       = {Ocean Dynamics},
  publisher     = {Springer Nature},
  year          = {2008},
  month         = {oct},
  doi           = {10.1007/s10236-008-0155-4},
  url           = {http://dx.doi.org/10.1007/s10236-008-0155-4},
  pages         = {289--309},
  volume        = {58},
  number        = {3-4},
  issn          = {1616-7228}
}

@article{         koch-larrouy.madec.ea_08*1,
  author        = {A. Koch-Larrouy and G. Madec and D. Iudicone and A.
                  Atmadipoera and R. Molcard},
  title         = {Physical processes contributing to the water mass
                  transformation of the Indonesian ThroughFlow},
  journal       = {Ocean Dynamics},
  publisher     = {Springer Nature},
  year          = {2008},
  month         = {oct},
  doi           = {10.1007/s10236-008-0154-5},
  url           = {http://dx.doi.org/10.1007/s10236-008-0154-5},
  pages         = {275--288},
  volume        = {58},
  number        = {3-4},
  issn          = {1616-7228}
}

@article{         kolmogorov_42,
  author        = {A. N. Kolmogorov},
  title         = {Equations of turbulent motion in an incompressible fluid},
  journal       = {Izvestiya Akademiya Nauk SSSR},
  year          = {1942},
  series        = {Fizika},
  pages         = {56--58},
  volume        = {6}
}

@techreport{      large.yeager_04,
  author        = {W. G. Large and S. G. Yeager},
  title         = {Diurnal to decadal global forcing for ocean and sea-ice
                  models: the data sets and flux climatologies},
  year          = {2004},
  month         = {may},
  doi           = {10.5065/d6kk98q6},
  url           = {http://dx.doi.org/10.5065/D6KK98Q6},
  institution   = {{NCAR} Climate and global dynamics division; Boulder, CO, United States}
}

@article{         lavergne.madec.ea_16*1,
  author        = {C. {de Lavergne} and G. Madec and J. {Le Sommer} and A. J. G.
                  Nurser and A. C. Naveira Garabato},
  title         = {The impact of a variable mixing efficiency on the abyssal
                  overturning},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2016},
  month         = {feb},
  doi           = {10.1175/jpo-d-14-0259.1},
  url           = {http://dx.doi.org/10.1175/JPO-D-14-0259.1},
  pages         = {663--681},
  volume        = {46},
  number        = {2},
  issn          = {1520-0485}
}

@article{         lazar.madec.ea_99,
  author        = {A. Lazar and G. Madec and P. Del\'{e}cluse},
  title         = {The Deep Interior Downwelling, the Veronis Effect, and
                  Mesoscale Tracer Transport Parameterizations in an {OGCM}},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1999},
  month         = {nov},
  doi           = {10.1175/1520-0485(1999)029<2945:tdidtv>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1999)029<2945:tdidtv>2.0.co;2},
  pages         = {2945--2961},
  volume        = {29},
  number        = {11},
  issn          = {1520-0485}
}

@phdthesis{       lazar_97,
  author        = {A. Lazar},
  title         = {La branche froide de la circulation thermohaline -
                  sensibilit\'{e} \`{a} la diffusion turbulente dans un
                  mod\`{e}le de circulation g\'{e}n\'{e}rale id\'{e}alis\'{e}e},
  year          = {1997},
  url           = {http://www.theses.fr/1997PA066680},
  pages         = {269},
  school        = {Universit\'{e} Pierre et Marie Curie, Paris, France}
}

@article{         le-sommer.penduff.ea_09,
  author        = {J. {Le Sommer} and T. Penduff and S. Theetten and G. Madec
                  and B. Barnier},
  title         = {How momentum advection schemes influence
                  current-topography interactions at eddy permitting
                  resolution},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2008.11.007},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.11.007},
  pages         = {1--14},
  volume        = {29},
  number        = {1},
  issn          = {1463-5003}
}

@article{         leclair.madec_09,
  author        = {M. Leclair and G. Madec},
  title         = {A conservative leapfrog time stepping method},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2009.06.006},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2009.06.006},
  pages         = {88--94},
  volume        = {30},
  number        = {2-3},
  issn          = {1463-5003}
}

@article{         leclair.madec_11,
  author        = {M. Leclair and G. Madec},
  title         = {$\tilde{z}$-coordinate, an arbitrary Lagrangian-Eulerian
                  coordinate separating high and low frequency motions},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2011},
  doi           = {10.1016/j.ocemod.2011.02.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2011.02.001},
  pages         = {139--152},
  volume        = {37},
  number        = {3-4},
  issn          = {1463-5003}
}

@phdthesis{       leclair_10,
  author        = {M. Leclair},
  title         = {Introduction d'une coordonn\'{e}e verticale arbitrairement
                  Lagrangienne Eul\'{e}rienne dans le code d'oc\'{e}an {NEMO}},
  year          = {2010},
  url           = {http://www.theses.fr/2010PA066728},
  pages         = {163},
  school        = {Universit\'{e} Pierre and Marie Curie, Paris, France}
}

@article{         lele_92,
  author        = {S. K. Lele},
  title         = {Compact finite difference schemes with spectral-like
                  resolution},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1992},
  month         = {nov},
  doi           = {10.1016/0021-9991(92)90324-r},
  url           = {http://dx.doi.org/10.1016/0021-9991(92)90324-r},
  pages         = {16--42},
  volume        = {103},
  number        = {1},
  issn          = {0021-9991}
}

@article{         lemarie.debreu.ea_12,
  author        = {F. Lemari\'{e} and L. Debreu and A. F. Shchepetkin and J.
                  C. McWilliams},
  title         = {On the stability and accuracy of the harmonic and
                  biharmonic isoneutral mixing operators in ocean models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2012},
  month         = {aug},
  doi           = {10.1016/j.ocemod.2012.04.007},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2012.04.007},
  pages         = {9--35},
  volume        = {52-53},
  issn          = {1463-5003}
}

@article{         lemarie.debreu.ea_15,
  author        = {F. Lemari\'{e} and L. Debreu and G. Madec and J. Demange
                  and J. M. Molines and M. Honnorat},
  title         = {Stability constraints for oceanic numerical models:
                  implications for the formulation of time and space
                  discretizations},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2015},
  month         = {aug},
  doi           = {10.1016/j.ocemod.2015.06.006},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2015.06.006},
  pages         = {124--148},
  volume        = {92},
  issn          = {1463-5003}
}

@article{         lengaigne.madec.ea_03,
  author        = {M. Lengaigne and G. Madec and G. Alory and C. Menkes},
  title         = {Impact of isopycnal mixing on the tropical ocean
                  circulation},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2003},
  doi           = {10.1029/2002jc001704},
  url           = {http://dx.doi.org/10.1029/2002JC001704},
  pages         = {3345},
  volume        = {108},
  number        = {C11},
  issn          = {0148-0227}
}

@article{         lengaigne.menkes.ea_07,
  author        = {M. Lengaigne and C. Menkes and O. Aumont and T. Gorgues
                  and L. Bopp and J.-M. Andr\'{e} and G. Madec},
  title         = {Influence of the oceanic biology on the tropical Pacific
                  climate in a Coupled General Circulation Model},
  journal       = {Climate Dynamics},
  publisher     = {Springer Nature},
  year          = {2007},
  month         = {nov},
  doi           = {10.1007/s00382-006-0200-2},
  url           = {http://dx.doi.org/10.1007/s00382-006-0200-2},
  pages         = {503--516},
  volume        = {28},
  number        = {5},
  issn          = {1432-0894}
}

@article{         leonard_79,
  author        = {B. P. Leonard},
  title         = {A stable and accurate convective modelling procedure based
                  on quadratic upstream interpolation},
  journal       = {Computer Methods in Applied Mechanics and Engineering},
  publisher     = {Elsevier BV},
  year          = {1979},
  month         = {jun},
  doi           = {10.1016/0045-7825(79)90034-3},
  url           = {http://dx.doi.org/10.1016/0045-7825(79)90034-3},
  pages         = {59--98},
  volume        = {19},
  number        = {1},
  issn          = {0045-7825}
}

@article{         leonard_91,
  author        = {B. P. Leonard},
  title         = {The {ULTIMATE} conservative difference scheme applied to
                  unsteady one-dimensional advection},
  journal       = {Computer Methods in Applied Mechanics and Engineering},
  publisher     = {Elsevier BV},
  year          = {1991},
  month         = {jun},
  doi           = {10.1016/0045-7825(91)90232-u},
  url           = {http://dx.doi.org/10.1016/0045-7825(91)90232-u},
  pages         = {17--74},
  volume        = {88},
  number        = {1},
  issn          = {0045-7825}
}

@article{         lermusiaux_01,
  author        = {P. F. J. Lermusiaux},
  title         = {Evolving the subspace of the three-dimensional multiscale
                  ocean variability: Massachusetts Bay},
  journal       = {Journal of Marine Systems},
  publisher     = {Elsevier BV},
  year          = {2001},
  month         = {may},
  doi           = {10.1016/s0924-7963(01)00025-2},
  url           = {http://dx.doi.org/10.1016/s0924-7963(01)00025-2},
  pages         = {385--422},
  volume        = {29},
  number        = {1-4},
  issn          = {0924-7963}
}

@techreport{      levier.treguier.ea_mersea07,
  author        = {B. Levier and A.-M. Tr\'{e}guier and G. Madec and V.
                  Garnier},
  title         = {Free surface and variable volume in the {NEMO} code},
  year          = {2007},
  month         = {may},
  doi           = {10.5281/zenodo.3244182},
  url           = {https://doi.org/10.5281/zenodo.3244182},
  institution   = {European Union: Marine Environment and Security for the
                  European Area (MERSEA) Integrated Project},
  pages         = {47}
}

@article{         levy.estublier.ea_01,
  author        = {M. L\'{e}vy and A. Estublier and G Madec},
  title         = {Choice of an advection scheme for biogeochemical models},
  journal       = {Geophysical Research Letters},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2001},
  month         = {oct},
  doi           = {10.1029/2001gl012947},
  url           = {http://dx.doi.org/10.1029/2001gl012947},
  pages         = {3725--3728},
  volume        = {28},
  number        = {19},
  issn          = {0094-8276}
}

@article{         levy.klein.ea_10,
  author        = {M. L\'{e}vy and P. Klein and A.-M. Tr\'{e}guier and D.
                  Iovino and G. Madec and S. Masson and K. Takahashi},
  title         = {Modifications of gyre circulation by sub-mesoscale
                  physics},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2010},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2010.04.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2010.04.001},
  pages         = {1--15},
  volume        = {34},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         li.garrett_93,
  author        = {M. Li and C. Garrett},
  title         = {Cell merging and the jet/downwelling ratio in Langmuir
                  circulation},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {1993},
  month         = {nov},
  doi           = {10.1357/0022240933223945},
  url           = {http://dx.doi.org/10.1357/0022240933223945},
  pages         = {737--769},
  volume        = {51},
  number        = {4},
  issn          = {1543-9542}
}

@article{         losch_08,
  author        = {M. Losch},
  title         = {Modeling ice shelf cavities in a z coordinate Ocean
                  General Circulation Model},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2008},
  month         = {aug},
  doi           = {10.1029/2007jc004368},
  url           = {http://dx.doi.org/10.1029/2007jc004368},
  volume        = {113},
  number        = {C8},
  issn          = {0148-0227}
}

@article{         lott.madec.ea_90,
  author        = {F. Lott and G. Madec and J. Verron},
  title         = {Topographic experiments in an Ocean General Circulation
                  Model},
  journal       = {Ocean Modelling},
  year          = {1990},
  pages         = {1--4},
  volume        = {88}
}

@article{         madec.chartier.ea_91,
  author        = {G. Madec and M. Chartier and M. Cr\'{e}pon},
  title         = {The effect of thermohaline forcing variability on deep
                  water formation in the western Mediterranean Sea: a
                  high-resolution three-dimensional numerical study},
  journal       = {Dynamics of Atmospheres and Oceans},
  publisher     = {Elsevier BV},
  year          = {1991},
  month         = {apr},
  doi           = {10.1016/0377-0265(91)90024-a},
  url           = {http://dx.doi.org/10.1016/0377-0265(91)90024-a},
  pages         = {301--332},
  volume        = {15},
  number        = {3-5},
  issn          = {0377-0265}
}

@inproceedings{   madec.crepon_91,
  author        = {G. Madec and M. Cr\'{e}pon},
  booktitle     = "Deep convection and deep water formation in the oceans,
                  Proceedings of the international Monterey colloquium on
                  deep convection and deep water formation in the oceans",
  publisher     = {Elsevier},
  editor        = {P.C. Chu and J.C. Gascard},
  year          = {1991},
  doi           = {10.1016/s0422-9894(08)70071-0},
  url           = {http://dx.doi.org/10.1016/s0422-9894(08)70071-0},
  title         = {Thermohaline-driven deep water formation in the
                  northwestern Mediterranean Sea},
  chapter       = {15},
  series        = {Elsevier Oceanography},
  volume        = {57},
  pages         = {241--265},
  issn          = {0422-9894},
  isbn          = {978-0-444-88764-1}
}

@article{         madec.delecluse.ea_91,
  author        = {G. Madec and P. Del\'{e}cluse and M. Cr\'{e}pon and M.
                  Chartier},
  title         = {A three-dimensional numerical study of deep-water
                  formation in the northwestern Mediterranean Sea},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1991},
  month         = {sep},
  doi           = {10.1175/1520-0485(1991)021<1349:atdnso>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1991)021<1349:atdnso>2.0.co;2},
  pages         = {1349--1371},
  volume        = {21},
  number        = {9},
  issn          = {1520-0485}
}

@article{         madec.delecluse.ea_96,
  author        = {G. Madec and P. Del\'{e}cluse and M. Cr\'{e}pon and F.
                  Lott},
  title         = {Large-Scale Preconditioning of Deep-Water Formation in the
                  northwestern Mediterranean Sea},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1996},
  month         = {aug},
  doi           = {10.1175/1520-0485(1996)026<1393:lspodw>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1996)026<1393:lspodw>2.0.co;2},
  pages         = {1393--1408},
  volume        = {26},
  number        = {8},
  issn          = {1520-0485}
}

@book{            madec.delecluse.ea_98,
  author        = {G. Madec and P. Del\'{e}cluse and M. Imbard and C.
                  L\'{e}vy},
  title         = {{OPA} 8.1 Ocean General Circulation Model reference
                  manual},
  journal       = {Note du Pole de Mod\'{e}lisation},
  publisher     = {Institut Pierre Simon Laplace ({IPSL})},
  year          = {1998},
  url           = {http://cmc.ipsl.fr/images/publications/scientific_notes/note11.pdf},
  pages         = {91},
  issn          = {1288-1619},
  volume        = {11}
}

@article{         madec.delecluse_97,
  author        = {G. Madec and P. Del\'{e}cluse},
  title         = {The {OPA}/{ARPEGE} and {OPA}/{LMD} Global Ocean-Atmosphere
                  Coupled Model},
  journal       = {International WOCE Newsletter},
  publisher     = {University of Southampton},
  year          = {1997},
  month         = {apr},
  url           = {https://www.nodc.noaa.gov/woce/wdiu/wocedocs/newsltr/news26/news26.pdf},
  pages         = {12--15},
  volume        = {26}
}

@article{         madec.imbard_96,
  author        = {G. Madec and M. Imbard},
  title         = {A global ocean mesh to overcome the North Pole
                  singularity},
  journal       = {Climate Dynamics},
  publisher     = {Springer Nature},
  year          = {1996},
  month         = {may},
  doi           = {10.1007/bf00211684},
  url           = {http://dx.doi.org/10.1007/bf00211684},
  pages         = {381--388},
  volume        = {12},
  number        = {6},
  issn          = {1432-0894}
}

@article{         maltrud.smith.ea_98,
  author        = {M. E. Maltrud and R. D. Smith and A. J. Semtner and R. C.
                  Malone},
  title         = {Global eddy-resolving ocean simulations driven by
                  1985-1995 atmospheric winds},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1998},
  month         = {dec},
  doi           = {10.1029/1998jc900013},
  url           = {http://dx.doi.org/10.1029/1998jc900013},
  pages         = {30825--30853},
  volume        = {103},
  number        = {C13},
  issn          = {0148-0227}
}

@article{         marchesiello.williams.ea_01,
  author        = {P. Marchesiello and J. C. McWilliams and A. Shchepetkin},
  title         = {Open boundary conditions for long-term integration of
                  regional oceanic models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2001},
  month         = {jan},
  doi           = {10.1016/s1463-5003(00)00013-5},
  url           = {http://dx.doi.org/10.1016/s1463-5003(00)00013-5},
  pages         = {1--20},
  volume        = {3},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         marsaleix.auclair.ea_08,
  author        = {P. Marsaleix and F. Auclair and J. W. Floor and M. J.
                  Herrmann and C. Estournel and I. Pairaud and C. Ulses},
  title         = {Energy conservation issues in sigma-coordinate
                  free-surface ocean models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2008},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2007.07.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2007.07.005},
  pages         = {61--89},
  volume        = {20},
  number        = {1},
  issn          = {1463-5003}
}

@article{         marsh.ivchenko.ea_15,
  author        = {R. Marsh and V. O. Ivchenko and N. Skliris and S. Alderson
                  and G. R. Bigg and G. Madec and A. T. Blaker and Y. Aksenov
                  and B. Sinha and A. C. Coward and J. {Le Sommer} and N.
                  Merino and V. B. Zalesny},
  title         = {{NEMO}-{ICB} (v1.0): interactive icebergs in the {NEMO}
                  ocean model globally configured at eddy-permitting
                  resolution},
  journal       = {Geoscientific Model Development},
  publisher     = {Copernicus GmbH},
  year          = {2015},
  month         = {may},
  doi           = {10.5194/gmd-8-1547-2015},
  url           = {http://dx.doi.org/10.5194/gmd-8-1547-2015},
  pages         = {1547--1562},
  volume        = {8},
  number        = {5},
  issn          = {1991-9603}
}

@article{         marti.madec.ea_92,
  author        = {O. Marti and G. Madec and P. Del\'{e}cluse},
  title         = {Comment on ``{N}et diffusivity in ocean general circulation
                  models with nonuniform grids'' by {F}. {L}. Yin and {I}.
                  {Y}. Fung},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1992},
  doi           = {10.1029/92jc00306},
  url           = {http://dx.doi.org/10.1029/92jc00306},
  pages         = {12763--12766},
  volume        = {97},
  number        = {C8},
  issn          = {0148-0227}
}

@article{         martin.adcroft_10,
  author        = {T. Martin and A. Adcroft},
  title         = {Parameterizing the fresh-water flux from land ice to ocean
                  with interactive icebergs in a coupled climate model},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2010},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2010.05.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2010.05.001},
  pages         = {111--124},
  volume        = {34},
  number        = {3-4},
  issn          = {1463-5003}
}

@article{         mathiot.jenkins.ea_17,
  author        = {P. Mathiot and A. Jenkins and C. Harris and G. Madec},
  title         = {Explicit representation and parametrised impacts of under
                  ice shelf seas in the \zstar coordinate ocean model {NEMO}
                  3.6},
  journal       = {Geoscientific Model Development},
  publisher     = {Copernicus GmbH},
  year          = {2017},
  month         = {jul},
  doi           = {10.5194/gmd-10-2849-2017},
  url           = {http://dx.doi.org/10.5194/gmd-10-2849-2017},
  pages         = {2849--2874},
  volume        = {10},
  number        = {7},
  issn          = {1991-9603}
}

@article{         mcdougall.taylor_84,
  author        = {T. J. McDougall and J. R. Taylor},
  title         = {Flux measurements across a finger interface at low values
                  of the stability ratio},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {1984},
  month         = {feb},
  doi           = {10.1357/002224084788506095},
  url           = {http://dx.doi.org/10.1357/002224084788506095},
  pages         = {1--14},
  volume        = {42},
  number        = {1},
  issn          = {1543-9542}
}

@article{         mcdougall_87,
  author        = {T. J. McDougall},
  title         = {Neutral Surfaces},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1987},
  month         = {nov},
  doi           = {10.1175/1520-0485(1987)017<1950:ns>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1987)017<1950:NS>2.0.CO;2},
  pages         = {1950--1964},
  volume        = {17},
  number        = {11},
  issn          = {1520-0485}
}

@article{         mellor.blumberg_04,
  author        = {G. Mellor and A. Blumberg},
  title         = {Wave Breaking and Ocean Surface Layer Thermal Response},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2004},
  month         = {mar},
  doi           = {10.1175/2517.1},
  url           = {http://dx.doi.org/10.1175/2517.1},
  pages         = {693--698},
  volume        = {34},
  number        = {3},
  issn          = {1520-0485}
}

@article{         mellor.yamada_82,
  author        = {G. L. Mellor and T. Yamada},
  title         = {Development of a turbulence closure model for geophysical
                  fluid problems},
  journal       = {Reviews of Geophysics},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1982},
  doi           = {10.1029/rg020i004p00851},
  url           = {http://dx.doi.org/10.1029/rg020i004p00851},
  pages         = {851--875},
  volume        = {20},
  number        = {4},
  issn          = {8755-1209}
}

@article{         merryfield.holloway.ea_99,
  author        = {W. J. Merryfield and G. Holloway and A. E. Gargett},
  title         = {A Global Ocean Model with Double-Diffusive Mixing},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1999},
  month         = {jun},
  doi           = {10.1175/1520-0485(1999)029<1124:agomwd>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1999)029<1124:agomwd>2.0.co;2},
  pages         = {1124--1142},
  volume        = {29},
  number        = {6},
  issn          = {1520-0485}
}

@book{            mesinger.arakawa_76,
  author        = {F. Mesinger and A. Arakawa},
  booktitle     = {Numerical methods used in atmospheric models},
  year          = {1976},
  month         = {aug},
  url           = {https://www.researchgate.net/publication/234333726_Numerical_Methods_Used_In_Atmospheric_Models},
  series        = {GARP Publication},
  volume        = {1},
  number        = {17}
}

@article{         morel.berthon_89,
  author        = {A. Morel and J.-F. Berthon},
  title         = {Surface pigments, algal biomass profiles, and potential
                  production of the euphotic layer: Relationships
                  reinvestigated in view of remote-sensing applications},
  journal       = {Limnology and Oceanography},
  publisher     = {Wiley},
  year          = {1989},
  month         = {dec},
  doi           = {10.4319/lo.1989.34.8.1545},
  url           = {http://dx.doi.org/10.4319/lo.1989.34.8.1545},
  pages         = {1545--1562},
  volume        = {34},
  number        = {8},
  issn          = {0024-3590}
}

@article{         morel.maritorena_01,
  author        = {A. Morel and S. Maritorena},
  title         = {Bio-optical properties of oceanic waters: {A}
                  reappraisal},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2001},
  month         = {apr},
  doi           = {10.1029/2000jc000319},
  url           = {http://dx.doi.org/10.1029/2000jc000319},
  pages         = {7163--7180},
  volume        = {106},
  number        = {C4},
  issn          = {0148-0227}
}

@article{         morel_88,
  author        = {A. Morel},
  title         = {Optical modeling of the upper ocean in relation to its
                  biogenous matter content (case {I} waters)},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1988},
  doi           = {10.1029/jc093ic09p10749},
  url           = {http://dx.doi.org/10.1029/jc093ic09p10749},
  pages         = {10749--10768},
  volume        = {93},
  number        = {C9},
  issn          = {0148-0227}
}

@article{         murray_96,
  author        = {R. J. Murray},
  title         = {Explicit Generation of Orthogonal Grids for Ocean Models},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1996},
  month         = {jul},
  doi           = {10.1006/jcph.1996.0136},
  url           = {http://dx.doi.org/10.1006/jcph.1996.0136},
  pages         = {251--273},
  volume        = {126},
  number        = {2},
  issn          = {0021-9991}
}

@article{         oey_06,
  author        = {L.-Y. Oey},
  title         = {An {OGCM} with movable land-sea boundaries},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2006},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2006.01.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2006.01.001},
  pages         = {176--195},
  volume        = {13},
  number        = {2},
  issn          = {1463-5003}
}

@article{         osborn_80,
  author        = {T. R. Osborn},
  title         = {Estimates of the local rate of vertical diffusion from
                  dissipation measurements},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1980},
  month         = {jan},
  doi           = {10.1175/1520-0485(1980)010<0083:eotlro>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1980)010<0083:eotlro>2.0.co;2},
  pages         = {83--89},
  volume        = {10},
  number        = {1},
  issn          = {1520-0485}
}

@article{         pacanowski.gnanadesikan_98,
  author        = {R. C. Pacanowski and A. Gnanadesikan},
  title         = {Transient response in a z-level ocean model that resolves
                  topography with partial-cells},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {dec},
  doi           = {10.1175/1520-0493(1998)126<3248:triazl>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1998)126<3248:triazl>2.0.co;2},
  pages         = {3248--3270},
  volume        = {126},
  number        = {12},
  issn          = {1520-0493}
}

@article{         pacanowski.philander_81,
  author        = {R. C. Pacanowski and S. G. H. Philander},
  title         = {Parameterization of Vertical Mixing in Numerical Models of
                  Tropical Oceans},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1981},
  month         = {nov},
  doi           = {10.1175/1520-0485(1981)011<1443:povmin>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1981)011<1443:povmin>2.0.co;2},
  pages         = {1443--1451},
  volume        = {11},
  number        = {11},
  issn          = {1520-0485}
}

@article{         paulson.simpson_77,
  author        = {C. A. Paulson and J. J. Simpson},
  title         = {Irradiance Measurements in the Upper Ocean},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1977},
  month         = {nov},
  doi           = {10.1175/1520-0485(1977)007<0952:imituo>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1977)007<0952:imituo>2.0.co;2},
  pages         = {952--956},
  volume        = {7},
  number        = {6},
  issn          = {1520-0485}
}

@article{         penduff.sommer.ea_07,
  author        = {T. Penduff and J. {Le Sommer} and B. Barnier and A.-M.
                  Tr\'{e}guier and J.-M. Molines and G. Madec},
  title         = {Influence of numerical schemes on current-topography
                  interactions in 1/4\deg global ocean simulations},
  journal       = {Ocean Science},
  publisher     = {Copernicus GmbH},
  year          = {2007},
  month         = {dec},
  doi           = {10.5194/os-3-509-2007},
  url           = {http://dx.doi.org/10.5194/os-3-509-2007},
  pages         = {509--524},
  volume        = {3},
  number        = {4},
  issn          = {1812-0792}
}

@article{         phillips_59,
  author        = {R. S. Phillips},
  title         = {Dissipative operators and hyperbolic systems of partial
                  differential equations},
  journal       = {Transactions of the American Mathematical Society},
  publisher     = {American Mathematical Society (AMS)},
  year          = {1959},
  month         = {feb},
  doi           = {10.1090/s0002-9947-1959-0104919-1},
  url           = {http://dx.doi.org/10.1090/S0002-9947-1959-0104919-1},
  pages         = {193--254},
  volume        = {90},
  number        = {2},
  issn          = {0002-9947}
}

@article{         redi_82,
  author        = {M. H. Redi},
  title         = {Oceanic isopycnal mixing by coordinate rotation},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1982},
  month         = {oct},
  doi           = {10.1175/1520-0485(1982)012<1154:oimbcr>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1982)012<1154:oimbcr>2.0.co;2},
  pages         = {1154--1158},
  volume        = {12},
  number        = {10},
  issn          = {1520-0485}
}

@book{            richtmyer.morton_67,
  author        = {R. D. Richtmyer and K. W. Morton},
  booktitle     = {Difference methods for initial-value problems},
  publisher     = {Interscience},
  year          = {1967},
  url           = {https://books.google.fr/books?id=nd1QAAAAMAAJ},
  pages         = {405},
  edition       = {2},
  isbn          = {9780470720400},
  issn          = {0074-994X},
  series        = {Interscience tracts in pure and applied mathematics}
}

@article{         robert_66,
  author        = {A. J. Robert},
  title         = {The integration of a low order spectral form of the
                  primitive meteorological equations},
  journal       = {Journal of the Meteorological Society of Japan},
  publisher     = {Meteorological Society of Japan},
  year          = {1966},
  doi           = {10.2151/jmsj1965.44.5\_237},
  url           = {http://dx.doi.org/10.2151/jmsj1965.44.5_237},
  pages         = {237--245},
  volume        = {44},
  number        = {5},
  issn          = {2186-9057}
}

@article{         rodgers.aumont.ea_14,
  author        = {K. B. Rodgers and O. Aumont and S. E. Mikaloff Fletcher
                  and Y. Plancherel and L. Bopp and C. {de Boyer Mont\'{e}gut}
                  and D. Iudicone and R. F. Keeling and G. Madec and R.
                  Wanninkhof},
  title         = {Strong sensitivity of Southern Ocean carbon uptake and
                  nutrient cycling to wind stirring},
  journal       = {Biogeosciences},
  publisher     = {Copernicus GmbH},
  year          = {2014},
  month         = {aug},
  doi           = {10.5194/bg-11-4077-2014},
  url           = {http://dx.doi.org/10.5194/bg-11-4077-2014},
  pages         = {4077--4098},
  volume        = {11},
  number        = {15},
  issn          = {1726-4189}
}

@article{         rodi_87,
  author        = {W. Rodi},
  title         = {Examples of calculation methods for flow and mixing in
                  stratified fluids},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1987},
  doi           = {10.1029/jc092ic05p05305},
  url           = {http://dx.doi.org/10.1029/jc092ic05p05305},
  pages         = {5305--5328},
  volume        = {92},
  number        = {C5},
  issn          = {0148-0227}
}

@article{         roquet.madec.ea_15,
  author        = {F. Roquet and G. Madec and T. J. McDougall and P. M.
                  Barker},
  title         = {Accurate polynomial expressions for the density and
                  specific volume of seawater using the {TEOS}-10 standard},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2015},
  month         = {jun},
  doi           = {10.1016/j.ocemod.2015.04.002},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2015.04.002},
  pages         = {29--43},
  volume        = {90},
  issn          = {1463-5003}
}

@article{         roquet.madec.ea_15*1,
  author        = {F. Roquet and G. Madec and L. Brodeau and J. Nycander},
  title         = {Defining a simplified yet ``realistic'' equation of
                  state for seawater},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2015},
  month         = {oct},
  doi           = {10.1175/jpo-d-15-0080.1},
  url           = {http://dx.doi.org/10.1175/JPO-D-15-0080.1},
  pages         = {2564--2579},
  volume        = {45},
  number        = {10},
  issn          = {1520-0485}
}

@article{         roullet.madec_00,
  author        = {G. Roullet and G. Madec},
  title         = {Salt conservation, free surface, and varying levels: {A}
                  new formulation for Ocean General Circulation Models},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2000},
  month         = {oct},
  doi           = {10.1029/2000jc900089},
  url           = {http://dx.doi.org/10.1029/2000jc900089},
  pages         = {23927--23942},
  volume        = {105},
  number        = {C10},
  issn          = {0148-0227}
}

@article{         sarmiento.bryan_82,
  author        = {J. L. Sarmiento and K. Bryan},
  title         = {An ocean transport model for the North Atlantic},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1982},
  doi           = {10.1029/jc087ic01p00394},
  url           = {http://dx.doi.org/10.1029/jc087ic01p00394},
  pages         = {394--409},
  volume        = {87},
  number        = {C1},
  issn          = {0148-0227}
}

@article{         saunders_67,
  author        = {P. M. Saunders},
  title         = {The temperature at the ocean-air interface},
  journal       = {Journal of the Atmospheric Sciences},
  publisher     = {American Meteorological Society},
  year          = {1967},
  month         = {may},
  doi           = {10.1175/1520-0469(1967)024<0269:ttatoa>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0469(1967)024<0269:TTATOA>2.0.CO;2},
  pages         = {269--273},
  volume        = {24},
  number        = {3},
  issn          = {1520-0469}
}

@article{         shchepetkin.mcwilliams_05,
  author        = {A. F. Shchepetkin and J. C. McWilliams},
  title         = {The regional oceanic modeling system ({ROMS}): a
                  split-explicit, free-surface,
                  topography-following-coordinate oceanic model},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2005},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2004.08.002},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2004.08.002},
  pages         = {347--404},
  volume        = {9},
  number        = {4},
  issn          = {1463-5003}
}

@inbook{          shchepetkin.mcwilliams_09,
  author        = {A. F. Shchepetkin and J. C. McWilliams},
  booktitle     = {Computational Methods for the Atmosphere and the Oceans},
  publisher     = {Elsevier},
  editor        = {R. M. Temam and J. J. Tribbia},
  year          = {2009},
  doi           = {10.1016/s1570-8659(08)01202-0},
  url           = {http://dx.doi.org/10.1016/s1570-8659(08)01202-0},
  title         = {Computational kernel algorithms for fine-scale,
                  multiprocess, longtime oceanic simulations},
  chapter       = {2},
  series        = {Handbook of Numerical Analysis},
  pages         = {121--183},
  volume        = {14},
  issn          = {1570-8659},
  isbn          = {9780444518934}
}

@article{         siddorn.furner_13,
  author        = {J. R. Siddorn and R. Furner},
  title         = {An analytical stretching function that combines the best
                  attributes of geopotential and terrain-following vertical
                  coordinates},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2013},
  month         = {jun},
  doi           = {10.1016/j.ocemod.2013.02.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2013.02.001},
  pages         = {1--13},
  volume        = {66},
  issn          = {1463-5003}
}

@article{         simmons.jayne.ea_04,
  author        = {H. L. Simmons and S. R. Jayne and L. C. {St Laurent} and
                  A. J. Weaver},
  title         = {Tidally driven mixing in a numerical model of the ocean
                  general circulation},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2004},
  month         = {jan},
  doi           = {10.1016/s1463-5003(03)00011-8},
  url           = {http://dx.doi.org/10.1016/s1463-5003(03)00011-8},
  pages         = {245--263},
  volume        = {6},
  number        = {3-4},
  issn          = {1463-5003}
}

@article{         song.haidvogel_94,
  author        = {Y. Song and D. Haidvogel},
  title         = {A semi-implicit ocean circulation model using a
                  generalized topography-following coordinate system},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1994},
  month         = {nov},
  doi           = {10.1006/jcph.1994.1189},
  url           = {http://dx.doi.org/10.1006/jcph.1994.1189},
  pages         = {228--244},
  volume        = {115},
  number        = {1},
  issn          = {0021-9991}
}

@article{         song_98,
  author        = {Y. T. Song},
  title         = {A General Pressure Gradient Formulation for Ocean Models.
                  Part {I}: Scheme Design and Diagnostic Analysis},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {dec},
  doi           = {10.1175/1520-0493(1998)126<3213:agpgff>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1998)126<3213:agpgff>2.0.co;2},
  pages         = {3213--3230},
  volume        = {126},
  number        = {12},
  issn          = {1520-0493}
}

@article{         st-laurent.nash_04,
  author        = {L. C. {St Laurent} and J. D. Nash},
  title         = {An examination of the radiative and dissipative properties
                  of deep ocean internal tides},
  journal       = {Deep Sea Research},
  publisher     = {Elsevier BV},
  year          = {2004},
  month         = {dec},
  doi           = {10.1016/j.dsr2.2004.09.008},
  url           = {http://dx.doi.org/10.1016/j.dsr2.2004.09.008},
  pages         = {3029--3042},
  volume        = {51},
  number        = {25-26},
  issn          = {0967-0645}
}

@article{         st-laurent.simmons.ea_02,
  author        = {L. C. {St Laurent} and H. L. Simmons and S. R. Jayne},
  title         = {Estimating tidally driven mixing in the deep ocean},
  journal       = {Geophysical Research Letters},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2002},
  month         = {dec},
  doi           = {10.1029/2002gl015633},
  url           = {http://dx.doi.org/10.1029/2002GL015633},
  pages         = {2101--2104},
  volume        = {29},
  number        = {23},
  issn          = {0094-8276}
}

@article{         stacey_99,
  author        = {M. W. Stacey},
  title         = {Simulations of the wind-forced near-surface circulation in
                  Knight Inlet: {A} parameterization of the roughness
                  length},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1999},
  month         = {jun},
  doi           = {10.1175/1520-0485(1999)029<1363:sotwfn>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1999)029<1363:sotwfn>2.0.co;2},
  pages         = {1363--1367},
  volume        = {29},
  number        = {6},
  issn          = {1520-0485}
}

@article{         steele.morley.ea_01,
  author        = {M. Steele and R. Morley and W. Ermold},
  title         = {{PHC}: {A} global ocean hydrography with a high-quality
                  Arctic Ocean},
  journal       = {Journal of Climate},
  publisher     = {American Meteorological Society},
  year          = {2001},
  month         = {may},
  doi           = {10.1175/1520-0442(2001)014<2079:pagohw>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0442(2001)014<2079:pagohw>2.0.co;2},
  pages         = {2079--2087},
  volume        = {14},
  number        = {9},
  issn          = {1520-0442}
}

@article{         stein.stein_92,
  author        = {C. A. Stein and S. Stein},
  title         = {A model for the global variation in oceanic depth and heat
                  flow with lithospheric age},
  journal       = {Nature},
  publisher     = {Springer Nature},
  year          = {1992},
  month         = {sep},
  doi           = {10.1038/359123a0},
  url           = {http://dx.doi.org/10.1038/359123a0},
  pages         = {123--129},
  volume        = {359},
  number        = {6391},
  issn          = {1476-4687}
}

@inbook{          stokes_09,
  author        = {G. G. Stokes},
  booktitle     = {Mathematical and Physical Papers},
  publisher     = {Cambridge University Press},
  year          = {2009},
  doi           = {10.1017/cbo9780511702242.013},
  url           = {http://dx.doi.org/10.1017/cbo9780511702242.013},
  title         = {On the theory of oscillatory waves},
  chapter       = {12},
  series        = {Cambridge Library Collection - Mathematics},
  volume        = {1},
  pages         = {197--229},
  isbn          = {9780511702242}
}

@article{         takaya.bidlot.ea_10,
  author        = {Y. Takaya and J-R. Bidlot and A. C. M. Beljaars and P. A.
                  E. M. Janssen},
  title         = {Refinements to a prognostic scheme of skin sea surface
                  temperature},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2010},
  month         = {jun},
  doi           = {10.1029/2009jc005985},
  url           = {http://dx.doi.org/10.1029/2009JC005985},
  pages         = {C06009},
  volume        = {115},
  number        = {C6},
  issn          = {0148-0227}
}

@article{         talagrand_72,
  author        = {O. Talagrand},
  title         = {On the damping of high-frequency motions in
                  four-dimensional assimilation of meteorological data},
  journal       = {Journal of the Atmospheric Sciences},
  publisher     = {American Meteorological Society},
  year          = {1972},
  month         = {nov},
  doi           = {10.1175/1520-0469(1972)029<1571:otdohf>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0469(1972)029<1571:otdohf>2.0.co;2},
  pages         = {1571--1574},
  volume        = {29},
  number        = {8},
  issn          = {1520-0469}
}

@book{            teos_10,
  author        = {IOC, SCOR and IAPSO},
  title         = {The international thermodynamic equation of seawater -
                  2010: Calculation and use of thermodynamic properties},
  publisher     = {UNESCO},
  editor        = {Intergovernmental Oceanographic Commission},
  year          = {2010},
  month         = {mar},
  url           = {https://unesdoc.unesco.org/ark:/48223/pf0000188170.locale=en},
  pages         = {196},
  volume        = {56},
  series        = {Manuals and Guides}
}

@article{         treguier.dukowicz.ea_96,
  author        = {A.-M. Tr\'{e}guier and J. K. Dukowicz and K. Bryan},
  title         = {Properties of nonuniform grids used in ocean general
                  circulation models},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1996},
  month         = {sep},
  doi           = {10.1029/96jc01753},
  url           = {http://dx.doi.org/10.1029/96jc01753},
  pages         = {20877--20881},
  volume        = {101},
  number        = {C9},
  issn          = {0148-0227}
}

@article{         treguier.held.ea_97,
  author        = {A. M. Tr\'{e}guier and I. M. Held and V. D. Larichev},
  title         = {Parameterization of Quasigeostrophic Eddies in Primitive
                  Equation Ocean Models},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1997},
  month         = {apr},
  doi           = {10.1175/1520-0485(1997)027<0567:poqeip>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1997)027<0567:poqeip>2.0.co;2},
  pages         = {567--580},
  volume        = {27},
  number        = {4},
  issn          = {1520-0485}
}

@article{         treguier_92,
  author        = {A. M. Tr\'{e}guier},
  title         = {Kinetic energy analysis of an eddy resolving, primitive
                  equation model of the North Atlantic},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1992},
  doi           = {10.1029/91jc02350},
  url           = {http://dx.doi.org/10.1029/91jc02350},
  pages         = {687--701},
  volume        = {97},
  number        = {C1},
  issn          = {0148-0227}
}

@article{         tu.tsuang_05,
  author        = {C.-Y. Tu and B.-J. Tsuang},
  title         = {Cool-skin simulation by a one-column ocean model},
  journal       = {Geophysical Research Letters},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2005},
  month         = {nov},
  doi           = {10.1029/2005gl024252},
  url           = {http://dx.doi.org/10.1029/2005GL024252},
  pages         = {L22602},
  volume        = {32},
  number        = {22},
  issn          = {0094-8276}
}

@article{         umlauf.burchard_03,
  author        = {L. Umlauf and H. Burchard},
  title         = {A generic length-scale equation for geophysical turbulence
                  models},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {2003},
  month         = {mar},
  doi           = {10.1357/002224003322005087},
  url           = {http://dx.doi.org/10.1357/002224003322005087},
  pages         = {235--265},
  volume        = {61},
  number        = {2},
  issn          = {0022-2402}
}

@article{         umlauf.burchard_05,
  author        = {L. Umlauf and H. Burchard},
  title         = {Second-order turbulence closure models for geophysical
                  boundary layers. {A} review of recent work},
  journal       = {Continental Shelf Research},
  publisher     = {Elsevier BV},
  year          = {2005},
  month         = {may},
  doi           = {10.1016/j.csr.2004.08.004},
  url           = {http://dx.doi.org/10.1016/j.csr.2004.08.004},
  pages         = {795--827},
  volume        = {25},
  number        = {7-8},
  issn          = {0278-4343}
}

@book{            vallis_06,
  author        = {G. K. Vallis},
  booktitle     = {Atmospheric and Oceanic Fluid Dynamics},
  publisher     = {Cambridge University Press},
  year          = {2006},
  doi           = {10.1017/cbo9780511790447},
  url           = {http://dx.doi.org/10.1017/cbo9780511790447},
  isbn          = {9780511790447}
}

@article{         vancoppenolle.fichefet.ea_09,
  author        = {M. Vancoppenolle and T. Fichefet and H. Goosse and S.
                  Bouillon and G. Madec and M. A. Morales Maqueda},
  title         = {Simulating the mass balance and salinity of Arctic and
                  Antarctic sea ice. 1. Model description and validation},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2008.10.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.10.005},
  pages         = {33--53},
  volume        = {27},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         vancoppenolle.fichefet.ea_09*1,
  author        = {M. Vancoppenolle and T. Fichefet and H. Goosse},
  title         = {Simulating the mass balance and salinity of Arctic and
                  Antarctic sea ice. 2. Importance of sea ice salinity
                  variations},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2008.11.003},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.11.003},
  pages         = {54--69},
  volume        = {27},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         warner.defne.ea_13,
  author        = {J. C. Warner and Z. Defne and K. Haas and H. G. Arango},
  title         = {A wetting and drying scheme for {ROMS}},
  journal       = {Computers \& Geosciences},
  publisher     = {Elsevier BV},
  year          = {2013},
  month         = {aug},
  doi           = {10.1016/j.cageo.2013.05.004},
  url           = {http://dx.doi.org/10.1016/j.cageo.2013.05.004},
  pages         = {54--61},
  volume        = {58},
  issn          = {0098-3004}
}

@article{         warner.sherwood.ea_05,
  author        = {J. C. Warner and C. R. Sherwood and H. G. Arango and R. P.
                  Signell},
  title         = {Performance of four turbulence closure models implemented
                  using a generic length scale method},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2005},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2003.12.003},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2003.12.003},
  pages         = {81--113},
  volume        = {8},
  number        = {1-2},
  issn          = {1463-5003}
}

@article{         weatherly_84,
  author        = {G. L. Weatherly},
  title         = {An estimate of bottom frictional dissipation by Gulf
                  Stream fluctuations},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {1984},
  month         = {may},
  doi           = {10.1357/002224084788502729},
  url           = {http://dx.doi.org/10.1357/002224084788502729},
  pages         = {289--301},
  volume        = {42},
  number        = {2},
  issn          = {1543-9542}
}

@article{         weaver.eby_97,
  author        = {A. J. Weaver and M. Eby},
  title         = {On the numerical implementation of advection schemes for
                  use in conjuction with various mixing parameterizations in
                  the {GFDL} ocean model},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1997},
  month         = {feb},
  doi           = {10.1175/1520-0485(1997)027<0369:otnioa>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1997)027<0369:otnioa>2.0.co;2},
  pages         = {369--377},
  volume        = {27},
  number        = {2},
  issn          = {1520-0485}
}

@article{         webb.cuevas.ea_98,
  author        = {D. J. Webb and B. A. {de Cuevas} and C. S. Richmond},
  title         = {Improved Advection Schemes for Ocean Models},
  journal       = {Journal of Atmospheric and Oceanic Technology},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {oct},
  doi           = {10.1175/1520-0426(1998)015<1171:iasfom>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0426(1998)015<1171:iasfom>2.0.co;2},
  pages         = {1171--1187},
  volume        = {15},
  number        = {5},
  issn          = {1520-0426}
}

@article{         white.adcroft.ea_09,
  author        = {L. White and A. Adcroft and R. Hallberg},
  title         = {High-order regridding-remapping schemes for continuous
                  isopycnal and generalized coordinates in ocean models},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {dec},
  doi           = {10.1016/j.jcp.2009.08.016},
  url           = {http://dx.doi.org/10.1016/j.jcp.2009.08.016},
  pages         = {8665--8692},
  volume        = {228},
  number        = {23},
  issn          = {0021-9991}
}

@article{         wilcox_88,
  author        = {D. C. Wilcox},
  title         = {Reassessment of the scale-determining equation for
                  advanced turbulence models},
  journal       = {AIAA Journal},
  publisher     = {American Institute of Aeronautics and Astronautics
                  (AIAA)},
  year          = {1988},
  month         = {nov},
  doi           = {10.2514/3.10041},
  url           = {http://dx.doi.org/10.2514/3.10041},
  pages         = {1299--1310},
  volume        = {26},
  number        = {11},
  issn          = {1533-385X}
}

@article{         willebrand.barnier.ea_01,
  author        = {J. Willebrand and B. Barnier and C. B{\"{o}}ning and C.
                  Dieterich and P. D. Killworth and C. Le Provost and Y. Jia
                  and J.-M. Molines and A. L. New},
  title         = {Circulation characteristics in three eddy-permitting
                  models of the North Atlantic},
  journal       = {Progress in Oceanography},
  publisher     = {Elsevier BV},
  year          = {2001},
  month         = {jan},
  doi           = {10.1016/s0079-6611(01)00003-9},
  url           = {http://dx.doi.org/10.1016/s0079-6611(01)00003-9},
  pages         = {123--161},
  volume        = {48},
  number        = {2-3},
  issn          = {0079-6611}
}

@article{         zalesak_79,
  author        = {S. T. Zalesak},
  title         = {Fully multidimensional flux-corrected transport algorithms
                  for fluids},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1979},
  month         = {jun},
  doi           = {10.1016/0021-9991(79)90051-2},
  url           = {http://dx.doi.org/10.1016/0021-9991(79)90051-2},
  pages         = {335--362},
  volume        = {31},
  number        = {3},
  issn          = {0021-9991}
}

@article{         zhang.endoh_92,
  author        = {R.-H. Zhang and M. Endoh},
  title         = {A free surface General Circulation Model for the tropical
                  Pacific Ocean},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1992},
  doi           = {10.1029/92jc00911},
  url           = {http://dx.doi.org/10.1029/92jc00911},
  pages         = {11237--11255},
  volume        = {97},
  number        = {C7},
  issn          = {0148-0227}
}