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bfm.nml in branches/2012/dev_r3379_CMCC6_topbfm/NEMOGCM/CONFIG/PELAGOS/EXP00 – NEMO

source: branches/2012/dev_r3379_CMCC6_topbfm/NEMOGCM/CONFIG/PELAGOS/EXP00/bfm.nml @ 3561

Last change on this file since 3561 was 3561, checked in by vichi, 10 years ago

Corrected bug in directory of ocean input files

It was not possible to read ocean input files from an external directory.
Also updated the header of ocean.output with the list of institutes

File size: 7.1 KB
Line 
1!-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
2! MODEL  BFM - Biogeochemical Flux Model
3!-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
4!BOP
5!
6! ROUTINE: Namelist for standalone
7!
8! DESCRIPTION
9!  Parameter values for module standalone filled by init_standalone
10!
11! AUTHORS
12!   Marcello Vichi and Piet Ruardij
13!
14! COPYING
15!   
16!   Copyright (C) 2008 M. Vichi and P. Ruardij
17!   (rua@nioz.nl; vichi@bo.ingv.it)
18!
19!   This program is free software; you can redistribute it and/or modify
20!   it under the terms of the GNU General Public License as published by
21!   the Free Software Foundation;
22!   This program is distributed in the hope that it will be useful,
23!   but WITHOUT ANY WARRANTY; without even the implied warranty of
24!   MERCHANTEABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
25!   GNU General Public License for more details.
26!
27!EOP
28!-------------------------------------------------------------------------!
29!BOC
30
31!-------------------------------------------------------------------------!
32!NAMELIST bfm_nml
33!-------------------------------------------------------------------------!
34!Main initialisation and output specifications
35!NAME           KIND    DESCRIPTION
36!bio_calc       logical Switch on/off BFM (for coupled configurations)
37!bfm_init       integer Initialization state
38!                       0. from constant values in bfm_init_nml below
39!                       1. from restart
40!bio_setup      integer BFM configuration:
41!                       1. pelagic
42!                       2. benthic
43!                       3. pelagic and benthic
44!out_fname      string  Name of NetCDF output file
45!out_dir        string  Path to the output file
46!out_title      string  Name of the experiment in NetCDF file
47!out_delta      integer Output is saved every out_delta timesteps
48!-------------------------------------------------------------------------!
49&bfm_nml
50    bio_calc = .TRUE.
51    bfm_init = 0
52   bio_setup = 1
53  bfm_rstctl = .FALSE.
54   out_fname = 'PELAGOS'
55     out_dir = '.'
56   out_title = 'PELAGOS'
57   out_delta = 45
58   parallel_log = .FALSE.
59/
60
61!-------------------------------------------------------------------------!
62!NAMELIST bfm_init_nml
63!-------------------------------------------------------------------------!
64!Pelagic initialisation
65! pelagic  (O)              O2:   Oxygen (mmol/m3)
66! pelagic  (P)              N1:   Phosphate (mmol/m3)
67! pelagic  (N)              N3:   Nitrate (mmol/m3)
68! pelagic  (N)              N4:   Ammonium (mmol/m3)
69! pelagic  (Si)             N5:   Silicate (mmol/m3)
70! pelagic  (R)              N6:   Reduction Equivalents (mmol/m3)
71! pelagic  (N)              O4:   N2-sink (mmol/m3)
72! pelagic  (CNP)            B1:   Pelagic Bacteria
73! pelagic  (CNPSiI)         P1:   Diatoms (group PhytoPlankton))
74! pelagic  (CNPSiI)         P2:   Flagellates (group PhytoPlankton))
75! pelagic  (CNPSiI)         P3:   PicoPhytoPlankton (group PhytoPlankton))
76! pelagic  (CNPSiI)         P4:   Dinoflagellates (group PhytoPlankton))
77! pelagic  (CNP)            Z3:   Carnivorous mesozooplankton (group MesoZooPlankton))
78! pelagic  (CNP)            Z4:   Omnivorous mesozooplankton (group MesoZooPlankton))
79! pelagic  (CNP)            Z5:   Microzooplankton (group MicroZooPlankton))
80! pelagic  (CNP)            Z6:   Heterotrophic nanoflagellates (HNAN) (group MicroZooPlankton))
81! pelagic  (CNPSi)          R1:   Labile Organic Carbon (LOC)
82! pelagic  (C)              R2:   CarboHydrates (sugars)
83! pelagic  (CNPSi)          R6:   Particulate Organic Carbon (POC)
84! pelagic  (C)              R7:   Refractory Disoolved Organic Carbon
85!<variablename>0 = <realvalue>
86!
87! Initialization with InitVar structure
88! BFM variable information for data input
89! availabel fields:
90! integer init: select the initialization
91!               0 = homogeneous
92!               1 = analytical
93!               2 = from file
94! options for init==1
95! real anv1: value in the surface layer
96! real anz1: depth of the surface layer
97! real anv2: value in the bottom layer
98! real anz2: depth of the bottom layer
99! options for init==2 (not used when coupled with NEMO because
100!                      overridden by values in namelist_top)
101! char filename: name of the input file
102! char  varname: name of the var in input file
103! Options currently used when coupled with NEMO
104! logical obc: variable has open boundary data
105! logical sbc: variable has surface boundary data
106! logical cbc: variable has coastal boundary data
107!-------------------------------------------------------------------------!
108&bfm_init_nml
109   O2o0 = 300.0,
110   InitVar(1)%init = 0,
111   InitVar(1)%sbc  = .false.,
112   InitVar(1)%cbc  = .false.,
113   InitVar(1)%obc  = .false.,
114   N1p0 = 1.0,
115   InitVar(2)%init = 2,
116   InitVar(2)%sbc  = .false.,
117   InitVar(2)%cbc  = .true.,
118   InitVar(2)%obc  = .false.,
119   N3n0 = 5.0,
120   InitVar(3)%init = 2,
121   InitVar(3)%sbc  = .false.,
122   InitVar(3)%cbc  = .true.,
123   InitVar(3)%obc  = .false.,
124   N4n0 = 1.0,
125   N5s0 = 8.0,
126   InitVar(6)%init = 2,
127   InitVar(6)%sbc  = .false.,
128   InitVar(6)%cbc  = .true.,
129   InitVar(6)%obc  = .false.,
130   N7f0 = 0.3,
131   InitVar(8)%init = 2,
132   InitVar(8)%sbc  = .true.,
133   InitVar(8)%cbc  = .true.,
134   InitVar(8)%obc  = .false.,
135   N6r0 = 1.0,
136   O4n0 = 200.0,
137   P1c0 = 1.0,
138   P2c0 = 1.0,
139   P3c0 = 1.0,
140   Z3c0 = 1.0,
141   Z4c0 = 1.0,
142   Z5c0 = 1.0,
143   Z6c0 = 1.0,
144   B1c0 = 1.0,
145   R2c0 = 0.1,
146   R6c0 = 0.1,
147   R7c0 = 1.0,
148   R1c0 = 1.0,
149   InitVar(45)%init = 2,
150   InitVar(45)%sbc  = .false.,
151   InitVar(45)%cbc  = .true.,
152   InitVar(45)%obc  = .false.,
153   O3c0 = 27060.0, ![mgC /m3] 2200 umol/Kg
154   InitVar(56)%init = 2,
155   InitVar(56)%anv1 = 25800.,
156   InitVar(56)%anz1 = 0.,
157   InitVar(56)%anv2 = 27900.,
158   InitVar(56)%anz2 = 1500.,
159   InitVar(56)%sbc  = .false.,
160   InitVar(56)%cbc  = .true.,
161   InitVar(56)%obc  = .false.,
162   O3h0 = 2660.0,  ![mmol eq/m3]  2600 umol/Kg
163   InitVar(57)%init = 2,
164   InitVar(57)%anv1 = 2375.,
165   InitVar(57)%anz1 = 0.,
166   InitVar(57)%anv2 = 2420.,
167   InitVar(57)%anz2 = 2000.,
168   InitVar(57)%sbc  = .false.,
169   InitVar(57)%cbc  = .false.,
170   InitVar(57)%obc  = .false.,
171/
172
173!-------------------------------------------------------------------------!
174!NAMELIST bfm_save_nml
175!-------------------------------------------------------------------------!
176!Stored variables
177!ave_save: average values over the output interval
178!var_save: instantaneous value at the output interval
179!-------------------------------------------------------------------------!
180&bfm_save_nml
181   ave_save = 'O2o','O3c','O3h','DIC','pCO2','pH',
182          'N1p','N3n','N4n','N5s','N7f',
183          'P1c','P1n','P1l','P1f','P2c','P2n','P2l','P3c','P3n','P3l',
184          'Z3c','Z4c','Z5c','Z6c','B1c',
185          'R1c','R2c','R6c','R6f',
186          'Chla','jsurO2o','jsurO3c',
187          'eiPI(iiP1)','eiPI(iiP2)','eiPI(iiP3)',
188          'qlPc(iiP1)','qlPc(iiP2)','qlPc(iiP3)',
189          'qnPc(iiP1)','qnPc(iiP2)','qnPc(iiP3)',
190          'qpPc(iiP1)','qpPc(iiP2)','qpPc(iiP3)',
191          'sunPI(iiP1)','sunPI(iiP2)','sunPI(iiP3)',
192          'EICE','ETW','EIR','EWIND'
193/
194
195!EOC
196!-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
197! MODEL  BFM - Biogeochemical Flux Model
198!-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
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