1 | #!/bin/bash |
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2 | #MSUB -T 3600 # elapsed time limit in seconds (60 minutes) |
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3 | #MSUB -r SETTE_JOB # Job name |
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4 | #MSUB -o sette.jobid_%I.txt # standard output |
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5 | #MSUB -e sette.jobid_%I.txt # standard error |
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6 | |
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7 | #====== Thin nodes (1 node = 2 * 8 procs) : |
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8 | #MSUB -n NPROCS # Total number of mpi task to use |
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9 | #### #MSUB -N 2 # number of nodes to use |
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10 | #MSUB -ra2286 # project name |
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11 | #MSUB -q standard # (queue name) only for thin nodes |
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12 | ########################################################################## |
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13 | # |
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14 | # Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these |
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15 | # (via sed operating on this template job file). |
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16 | # |
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17 | OCEANCORES=NPROCS |
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18 | export SETTE_DIR=DEF_SETTE_DIR |
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19 | # |
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20 | # set up mpp computing environment |
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21 | # |
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22 | # Local settings for machine BULL (TITANE at CCRT France) |
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23 | # |
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24 | export MPIRUN="mpirun -np $OCEANCORES" |
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25 | |
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26 | # |
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27 | # load sette functions (only post_test_tidyup needed) |
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28 | # |
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29 | . ${SETTE_DIR}/all_functions.sh |
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30 | # |
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31 | |
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32 | # modules to load |
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33 | module unload netcdf |
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34 | module unload hdf5 |
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35 | module load netcdf/4.3.3.1_hdf5_parallel |
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36 | module load hdf5/1.8.12_parallel |
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37 | |
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38 | # Don't remove neither change the following line |
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39 | # BODY |
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40 | |
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41 | # |
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42 | # These variables are needed by post_test_tidyup function in all_functions.sh |
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43 | # |
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44 | export EXE_DIR=DEF_EXE_DIR |
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45 | export INPUT_DIR=DEF_INPUT_DIR |
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46 | export CONFIG_DIR=DEF_CONFIG_DIR |
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47 | export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION |
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48 | export NEW_CONF=DEF_NEW_CONF |
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49 | export CMP_NAM=DEF_CMP_NAM |
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50 | export TEST_NAME=DEF_TEST_NAME |
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51 | # |
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52 | # end of set up |
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53 | ############################################################### |
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54 | # |
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55 | # change to the working directory |
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56 | # |
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57 | cd ${EXE_DIR} |
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58 | |
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59 | echo Running on host `hostname` |
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60 | echo Time is `date` |
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61 | echo Directory is `pwd` |
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62 | # |
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63 | # Run the parallel MPI executable |
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64 | # |
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65 | echo "Running time ${MPIRUN} ./opa" |
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66 | # |
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67 | if [ MPI_FLAG == "yes" ]; then |
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68 | time ${MPIRUN} ./opa |
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69 | else |
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70 | time ./opa |
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71 | fi |
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72 | |
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73 | # |
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74 | post_test_tidyup |
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75 | |
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76 | # END_BODY |
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77 | # Don't remove neither change the previous line |
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78 | |
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79 | |
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80 | exit |
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81 | |
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