| 1 | %% ============================================================================== |
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| 2 | %% NEMO_book.tex: build the NEMO Reference Manual |
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| 3 | %% ============================================================================== |
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| 4 | |
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| 5 | |
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| 6 | %% Run build_NEMO_manual.sh to generate the PDF version (with pdflatex) |
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| 7 | |
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| 8 | |
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| 9 | %% Preamble |
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| 10 | %% ============================================================================== |
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| 11 | |
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| 12 | \include{texfiles/preamble} |
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| 13 | |
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| 14 | \begin{document} |
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| 15 | |
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| 16 | |
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| 17 | %% 'minted' env. & shortcuts for syntax highlighting |
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| 18 | |
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| 19 | \setminted[fortran]{fontsize=\tiny, breaklines} |
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| 20 | \newminted{fortran}{} % \begin{fortrancode} |
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| 21 | \newmintinline{fortran}{} % \fortraninline |
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| 22 | \newmintedfile{fortran}{} % \fortranfile |
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| 23 | \newminted{xml}{fontsize=\tiny, breaklines} |
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| 24 | \newminted{sh}{} |
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| 25 | \newminted{c}{} |
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| 26 | |
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| 27 | |
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| 28 | %% Frontmatter |
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| 29 | %% ============================================================================== |
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| 30 | |
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| 31 | \include{texfiles/top_matter} |
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| 32 | |
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| 33 | |
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| 34 | %% Frontpage |
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| 35 | |
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| 36 | \maketitle |
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| 37 | \frontmatter |
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| 38 | |
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| 39 | |
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| 40 | %% ToC i.e. Table of Contents |
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| 41 | |
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| 42 | \dominitoc |
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| 43 | \tableofcontents |
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| 44 | |
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| 45 | |
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| 46 | %% Mainmatter |
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| 47 | %% ============================================================================== |
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| 48 | |
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| 49 | \mainmatter |
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| 50 | |
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| 51 | |
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| 52 | %% Abstract - Foreword |
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| 53 | |
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| 54 | \subfile{texfiles/chapters/abstract_foreword} |
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| 55 | |
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| 56 | |
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| 57 | % Introduction |
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| 58 | |
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| 59 | \subfile{texfiles/chapters/introduction} |
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| 60 | |
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| 61 | |
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| 62 | % Chapters |
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| 63 | |
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| 64 | \subfile{texfiles/chapters/chap_model_basics} |
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| 65 | |
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| 66 | \subfile{texfiles/chapters/chap_step} % Time discretisation (time stepping strategy) |
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| 67 | |
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| 68 | \subfile{texfiles/chapters/chap_DOM} % Space discretisation |
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| 69 | |
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| 70 | \subfile{texfiles/chapters/chap_TRA} % Tracer advection/diffusion equation |
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| 71 | |
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| 72 | \subfile{texfiles/chapters/chap_DYN} % Dynamics : momentum equation |
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| 73 | |
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| 74 | \subfile{texfiles/chapters/chap_SBC} % Surface Boundary Conditions |
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| 75 | |
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| 76 | \subfile{texfiles/chapters/chap_LBC} % Lateral Boundary Conditions |
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| 77 | |
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| 78 | \subfile{texfiles/chapters/chap_LDF} % Lateral diffusion |
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| 79 | |
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| 80 | \subfile{texfiles/chapters/chap_ZDF} % Vertical diffusion |
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| 81 | |
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| 82 | \subfile{texfiles/chapters/chap_DIA} % Outputs and Diagnostics |
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| 83 | |
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| 84 | \subfile{texfiles/chapters/chap_OBS} % Observation operator |
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| 85 | |
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| 86 | \subfile{texfiles/chapters/chap_ASM} % Assimilation increments |
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| 87 | |
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| 88 | \subfile{texfiles/chapters/chap_STO} % Stochastic param. |
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| 89 | |
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| 90 | \subfile{texfiles/chapters/chap_misc} % Miscellaneous topics |
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| 91 | |
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| 92 | \subfile{texfiles/chapters/chap_CONFIG} % Predefined configurations |
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| 93 | |
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| 94 | |
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| 95 | % Appendix |
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| 96 | |
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| 97 | \appendix |
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| 98 | |
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| 99 | \subfile{texfiles/chapters/annex_A} % Generalised vertical coordinate |
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| 100 | |
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| 101 | \subfile{texfiles/chapters/annex_B} % Diffusive operator |
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| 102 | |
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| 103 | \subfile{texfiles/chapters/annex_C} % Discrete invariants of the eqs. |
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| 104 | |
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| 105 | \subfile{texfiles/chapters/annex_iso} % Isoneutral diffusion using triads |
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| 106 | |
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| 107 | \subfile{texfiles/chapters/annex_D} % Coding rules |
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| 108 | |
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| 109 | %% Not included |
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| 110 | %\subfile{texfiles/chapters/chap_conservation} % |
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| 111 | %\subfile{texfiles/chapters/annex_E} % Notes on some on going staff |
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| 112 | %\subfile{texfiles/chapters/annex_Fox-Kemper} % Notes on Fox-Kemper |
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| 113 | %\subfile{texfiles/chapters/annex_EVP} % Notes on EVP |
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| 114 | |
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| 115 | |
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| 116 | %% Backmatter |
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| 117 | %% ============================================================================== |
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| 118 | |
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| 119 | \backmatter |
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| 120 | |
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| 121 | |
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| 122 | %% Index |
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| 123 | |
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| 124 | %\addcontentsline{toc}{chapter}{Index} |
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| 125 | \printindex |
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| 126 | |
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| 127 | |
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| 128 | %% Bibliography |
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| 129 | |
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| 130 | \bibliography{texfiles/bibliography/NEMO_manual} |
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| 131 | |
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| 132 | |
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| 133 | \end{document} |
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