| 1 | #!/bin/bash -f |
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| 2 | # set -vx |
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| 3 | # simple SETTE report generator. |
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| 4 | # |
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| 5 | # This version should be run in the SETTE directory. |
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| 6 | # The machine name will be picked up from the sette.sh script but the location of the |
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| 7 | # validation directory needs to be set here (currently assumed to reside in the ../CONFIG directory) |
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| 8 | # |
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| 9 | ######################################################################################### |
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| 10 | ######################### Start of function definitions ################################# |
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| 11 | ## |
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| 12 | |
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| 13 | function restfile() { |
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| 14 | # Rebuild ice restart for SAS CONFIG, and restartability checks. Expects LONG and SHORT run directories. |
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| 15 | # For Stand Alone Surface configuration ocean is not running, just run ice model; so no outputs ocean files. |
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| 16 | # Compares LONG rebuild restart ice file with equivalent entry from the SHORT rebuild restart ice file. |
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| 17 | # |
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| 18 | # check nco module loaded, and load it if not |
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| 19 | if [ ! $( echo $LOADEDMODULES | grep cdo ) ]; then module load cdo >& /dev/null ; fi |
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| 20 | # |
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| 21 | vdir=$1 |
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| 22 | nam=$2 |
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| 23 | pass=$3 |
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| 24 | |
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| 25 | # |
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| 26 | if [ -d $vdir/$nam ]; then |
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| 27 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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| 28 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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| 29 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -2l | head -1 ` |
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| 30 | rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -1l` |
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| 31 | cd ${SAS_RESTART_DIR}/LONG |
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| 32 | #SF add here compilation of rebuild_tools to rebuild restart files, and add comparison of restart files |
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| 33 | cd ${TOOLS_DIR} |
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| 34 | ./maketools -n REBUILD_NEMO -m ${mach} > /dev/null 2>&1 |
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| 35 | cd ${TOOLS_DIR}/REBUILD_NEMO |
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| 36 | #SF echo "REBUILD LONG restart SAS files, without standard output" |
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| 37 | ./rebuild_nemo -t 4 ../../CONFIG/ORCA2_SAS_SI3_ST/LONG/SAS_00000240_restart_ice $NPROC > /dev/null 2>&1 |
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| 38 | #SF echo "REBUILD SHORT restart SAS files, without standard output" |
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| 39 | ./rebuild_nemo -t 4 ../../CONFIG/ORCA2_SAS_SI3_ST/SHORT/SAS_00000240_restart_ice $NPROC >&- |
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| 40 | cd ${SAS_RESTART_DIR}/LONG |
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| 41 | #SF echo "COPY rebuild restart files" |
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| 42 | cp SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/LONG/. |
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| 43 | cp ../SHORT/SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/SHORT/. |
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| 44 | |
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| 45 | f1o=$vdir/$nam/$mach/$dorv/LONG/SAS_00000240_restart_ice.nc |
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| 46 | f2o=$vdir/$nam/$mach/$dorv/SHORT/SAS_00000240_restart_ice.nc |
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| 47 | if [ ! -f $f1o ] && [ ! -f $f2o ] ; then |
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| 48 | printf "%-27s %s\n" $nam " REBUILD SAS restart ice DOES NOT exists; incomplete test"; |
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| 49 | return; |
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| 50 | fi |
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| 51 | # |
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| 52 | done_oce=0 |
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| 53 | # |
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| 54 | if [ -f $f1o ] && [ -f $f2o ]; then |
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| 55 | ## Compare the two netcdf files |
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| 56 | cdo diffn $f1o $f2o > cdo_diff.out 2> /dev/null |
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| 57 | ## Identical if cdo_diff.out exists but has zero size |
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| 58 | if [ ! -s cdo_diff.out ]; then |
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| 59 | difi=0 |
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| 60 | else |
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| 61 | ## Identical if first character of $dif ==0 |
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| 62 | dif=$( grep -om1 '[0-9]* of [0-9]* records differ' cdo_diff.out ) |
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| 63 | # difi contains the first character of summary of cdo dif. if = 0, then 0 record differ between the 2 files |
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| 64 | if [ -n "$dif" ]; then |
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| 65 | difi=`echo $dif | cut -c -1` |
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| 66 | fi |
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| 67 | fi |
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| 68 | \rm cdo_diff.out |
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| 69 | |
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| 70 | if [ $difi == 0 ]; then |
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| 71 | if [ $pass == 0 ]; then |
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| 72 | printf "%-27s %s %s\n" $nam " ice restarts are IDENTICAL passed : " $dorv |
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| 73 | fi |
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| 74 | else |
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| 75 | printf "%-27s %s %s\n" $nam " ice restarts are DIFFERENT FAILED : " $dorv |
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| 76 | # |
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| 77 | # Offer view of differences on the second pass |
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| 78 | # |
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| 79 | if [ $pass == 1 ]; then |
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| 80 | echo "<return> to view restart_ice.nc differences" |
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| 81 | read y |
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| 82 | cdo -diffv $f1o $f2o |
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| 83 | done_oce=1 |
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| 84 | #echo "<return> to continue" |
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| 85 | #read y |
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| 86 | fi |
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| 87 | fi |
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| 88 | else |
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| 89 | printf "%-27s %s\n" $nam " incomplete test"; |
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| 90 | return; |
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| 91 | fi |
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| 92 | # |
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| 93 | fi |
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| 94 | } |
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| 95 | |
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| 96 | function resttest() { |
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| 97 | # |
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| 98 | # Restartability checks. Expects LONG and SHORT run directories |
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| 99 | # Compares end of LONG stat files with equivalent entries from the SHORT stat files. |
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| 100 | # |
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| 101 | vdir=$1 |
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| 102 | nam=$2 |
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| 103 | pass=$3 |
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| 104 | # |
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| 105 | if [ -d $vdir/$nam ]; then |
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| 106 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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| 107 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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| 108 | f1o=$vdir/$nam/$mach/$dorv/LONG/ocean.output |
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| 109 | f1s=$vdir/$nam/$mach/$dorv/LONG/run.stat |
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| 110 | f1t=$vdir/$nam/$mach/$dorv/LONG/tracer.stat |
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| 111 | f2o=$vdir/$nam/$mach/$dorv/SHORT/ocean.output |
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| 112 | f2s=$vdir/$nam/$mach/$dorv/SHORT/run.stat |
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| 113 | f2t=$vdir/$nam/$mach/$dorv/SHORT/tracer.stat |
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| 114 | |
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| 115 | if [ ! -f $f1s ] && [ ! -f $f1t ] ; then |
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| 116 | printf "%-27s %s\n" $nam " incomplete test"; |
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| 117 | return; |
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| 118 | fi |
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| 119 | if [ ! -f $f2s ] && [ ! -f $f2t ] ; then |
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| 120 | printf "%-27s %s\n" $nam " incomplete test"; |
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| 121 | return; |
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| 122 | fi |
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| 123 | # |
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| 124 | done_oce=0 |
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| 125 | |
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| 126 | if [ -f $f1s ] && [ -f $f2s ]; then |
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| 127 | nl=(`wc -l $f2s`) |
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| 128 | tail -${nl[0]} $f1s > f1.tmp$$ |
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| 129 | cmp -s f1.tmp$$ $f2s |
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| 130 | if [ $? == 0 ]; then |
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| 131 | if [ $pass == 0 ]; then |
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| 132 | printf "%-27s %s %s\n" $nam " run.stat restartability passed : " $dorv |
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| 133 | fi |
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| 134 | else |
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| 135 | printf "%-27s %s %s\n" $nam " run.stat restartability FAILED : " $dorv |
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| 136 | # |
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| 137 | # Offer view of differences on the second pass |
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| 138 | # |
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| 139 | if [ $pass == 1 ]; then |
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| 140 | echo "<return> to view run.stat differences" |
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| 141 | read y |
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| 142 | sdiff f1.tmp$$ $f2s |
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| 143 | echo "<return> to view ocean.output differences" |
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| 144 | read y |
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| 145 | sdiff $f1o $f2o | grep "|" |
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| 146 | done_oce=1 |
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| 147 | echo "<return> to continue" |
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| 148 | read y |
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| 149 | fi |
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| 150 | fi |
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| 151 | fi |
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| 152 | # |
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| 153 | # Check tracer.stat files (if they exist) |
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| 154 | # |
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| 155 | if [ -f $f1t ] && [ -f $f2t ]; then |
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| 156 | nl=(`wc -l $f2t`) |
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| 157 | tail -${nl[0]} $f1t > f1.tmp$$ |
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| 158 | cmp -s f1.tmp$$ $f2t |
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| 159 | if [ $? == 0 ]; then |
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| 160 | if [ $pass == 0 ]; then |
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| 161 | printf "%-27s %s %s\n" $nam " tracer.stat restartability passed : " $dorv |
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| 162 | fi |
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| 163 | else |
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| 164 | printf "%-27s %s %s\n" $nam " tracer.stat restartability FAILED : " $dorv |
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| 165 | # |
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| 166 | # Offer view of differences on the second pass |
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| 167 | # |
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| 168 | if [ $pass == 1 ]; then |
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| 169 | echo "<return> to view tracer.stat differences" |
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| 170 | read y |
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| 171 | sdiff f1.tmp$$ $f2t |
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| 172 | # |
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| 173 | # Only offer ocean.output view if it has not been viewed previously |
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| 174 | # |
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| 175 | if [ $done_oce == 0 ]; then |
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| 176 | echo "<return> to view ocean.output differences" |
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| 177 | read y |
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| 178 | sdiff $f1o $f2o | grep "|" |
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| 179 | fi |
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| 180 | echo "<return> to continue" |
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| 181 | read y |
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| 182 | fi |
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| 183 | fi |
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| 184 | fi |
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| 185 | rm f1.tmp$$ |
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| 186 | fi |
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| 187 | } |
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| 188 | |
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| 189 | function reprotest(){ |
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| 190 | # |
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| 191 | # Reproducibility checks. Expects REPRO_N_M and REPRO_I_J run directories |
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| 192 | # Compares end of stat files from each |
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| 193 | # |
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| 194 | vdir=$1 |
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| 195 | nam=$2 |
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| 196 | pass=$3 |
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| 197 | # |
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| 198 | if [ -d $vdir/$nam ]; then |
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| 199 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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| 200 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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| 201 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -2l | head -1 ` |
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| 202 | rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -1l` |
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| 203 | f1o=$vdir/$nam/$mach/$dorv/$rep1/ocean.output |
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| 204 | f1s=$vdir/$nam/$mach/$dorv/$rep1/run.stat |
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| 205 | f1t=$vdir/$nam/$mach/$dorv/$rep1/tracer.stat |
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| 206 | f2o=$vdir/$nam/$mach/$dorv/$rep2/ocean.output |
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| 207 | f2s=$vdir/$nam/$mach/$dorv/$rep2/run.stat |
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| 208 | f2t=$vdir/$nam/$mach/$dorv/$rep2/tracer.stat |
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| 209 | |
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| 210 | if [ ! -f $f1s ] && [ ! -f $f1t ] ; then |
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| 211 | printf "%-27s %s\n" $nam " incomplete test"; |
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| 212 | return; |
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| 213 | fi |
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| 214 | if [ ! -f $f2s ] && [ ! -f $f2t ] ; then |
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| 215 | printf "%-27s %s\n" $nam " incomplete test"; |
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| 216 | return; |
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| 217 | fi |
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| 218 | # |
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| 219 | done_oce=0 |
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| 220 | |
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| 221 | if [ -f $f1s ] && [ -f $f2s ] ; then |
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| 222 | cmp -s $f1s $f2s |
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| 223 | if [ $? == 0 ]; then |
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| 224 | if [ $pass == 0 ]; then |
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| 225 | printf "%-27s %s %s\n" $nam " run.stat reproducibility passed : " $dorv |
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| 226 | fi |
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| 227 | else |
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| 228 | printf "%-27s %s %s\n" $nam " run.stat reproducibility FAILED : " $dorv |
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| 229 | # |
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| 230 | # Offer view of differences on the second pass |
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| 231 | # |
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| 232 | if [ $pass == 1 ]; then |
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| 233 | echo "<return> to view run.stat differences" |
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| 234 | read y |
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| 235 | sdiff f1.tmp$$ $f2s |
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| 236 | echo "<return> to view ocean.output differences" |
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| 237 | read y |
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| 238 | sdiff $f1o $f2o | grep "|" |
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| 239 | done_oce=1 |
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| 240 | echo "<return> to continue" |
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| 241 | read y |
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| 242 | fi |
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| 243 | fi |
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| 244 | fi |
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| 245 | # |
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| 246 | # Check tracer.stat files (if they exist) |
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| 247 | # |
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| 248 | if [ -f $f1t ] && [ -f $f2t ] ; then |
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| 249 | cmp -s $f1t $f2t |
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| 250 | if [ $? == 0 ]; then |
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| 251 | if [ $pass == 0 ]; then printf "%-27s %s %s\n" $nam " tracer.stat reproducibility passed : " $dorv |
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| 252 | fi |
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| 253 | else |
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| 254 | printf "%-27s %s %s\n" $nam " tracer.stat reproducibility FAILED : " $dorv |
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| 255 | # |
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| 256 | # Offer view of differences on the second pass |
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| 257 | # |
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| 258 | if [ $pass == 1 ]; then |
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| 259 | echo "<return> to view tracer.stat differences" |
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| 260 | read y |
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| 261 | sdiff $f1t $f2t |
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| 262 | # |
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| 263 | # Only offer ocean.output view if it has not been viewed previously |
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| 264 | # |
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| 265 | if [ $done_oce == 0 ]; then |
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| 266 | echo "<return> to view ocean.output differences" |
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| 267 | read y |
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| 268 | sdiff $f1o $f2o | grep "|" |
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| 269 | fi |
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| 270 | echo "<return> to continue" |
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| 271 | read y |
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| 272 | fi |
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| 273 | fi |
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| 274 | fi |
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| 275 | fi |
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| 276 | } |
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| 277 | |
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| 278 | function runtest(){ |
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| 279 | # |
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| 280 | # Run checks. |
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| 281 | # Check presence of E R R O R in ocean.output from each |
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| 282 | # |
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| 283 | vdir=$1 |
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| 284 | nam=$2 |
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| 285 | pass=$3 |
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| 286 | # |
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| 287 | if [ -d $vdir/$nam ]; then |
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| 288 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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| 289 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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| 290 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -2l | head -1 ` |
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| 291 | f1o=$vdir/$nam/$mach/$dorv/$rep1/ocean.output |
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| 292 | if [ ! -f $f1o ] ; then |
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| 293 | printf "%-27s %s %s\n" $nam " ocean.output is MISSING : " $dorv |
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| 294 | return; |
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| 295 | else |
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| 296 | nerr=`grep 'E R R O R' $f1o | wc -l` |
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| 297 | if [[ $nerr > 0 ]]; then |
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| 298 | printf "%-27s %s %s\n" $nam " run FAILED : " $dorv |
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| 299 | if [ $pass == 1 ]; then |
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| 300 | echo "<return> to view end of ocean.output" |
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| 301 | read y |
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| 302 | tail -100 $f1o |
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| 303 | echo '' |
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| 304 | echo "full ocean.output available here: $f1o" |
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| 305 | fi |
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| 306 | fi |
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| 307 | fi |
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| 308 | else |
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| 309 | printf "%-27s %s %s\n" $nam " directory is MISSING : " $dorv |
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| 310 | fi |
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| 311 | } |
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| 312 | |
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| 313 | function identictest(){ |
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| 314 | # |
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| 315 | # checks AGRIF does not corrupe results with no AGRIF zoom. Expects ORCA2AGUL/AGRIFNOZ and ORCA2AGUL_NAGR/AGRIFNO run directories |
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| 316 | # Compares solver.stat files for each |
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| 317 | # |
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| 318 | vdir=$1 |
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| 319 | dir1=$2 |
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| 320 | dir2=$3 |
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| 321 | pass=$4 |
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| 322 | # |
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| 323 | if [ -d $vdir/$dir1 ] && [ -d $vdir/$dir2 ]; then |
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| 324 | dorv1=`ls -1rt $vdir/$dir1/$mach/ | tail -1l ` |
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| 325 | dorv1=`echo $dorv1 | sed -e 's:.*/::'` |
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| 326 | dorv2=`ls -1rt $vdir/$dir2/$mach/ | tail -1l ` |
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| 327 | dorv2=`echo $dorv2 | sed -e 's:.*/::'` |
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| 328 | |
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| 329 | rep1=`ls -1rt $vdir/$dir1/$mach/$dorv1/ | tail -1l` |
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| 330 | #clem rep2=`ls -1rt $vdir/$dir2/$mach/$dorv2/ | tail -1l` |
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| 331 | rep2=`ls -1rt $vdir/$dir1/$mach/$dorv1/ | tail -1l` |
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| 332 | f1s=$vdir/$dir1/$mach/$dorv1/$rep1/run.stat |
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| 333 | f2s=$vdir/$dir2/$mach/$dorv2/$rep2/run.stat |
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| 334 | |
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| 335 | if [ ! -f $f1s ] && [ ! -f $f2s ] ; then |
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| 336 | printf "%-27s %s\n" $dir1 $dir2 " incomplete test"; |
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| 337 | return; |
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| 338 | fi |
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| 339 | # |
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| 340 | done_oce=0 |
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| 341 | |
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| 342 | if [ -f $f1s ] && [ -f $f2s ] ; then |
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| 343 | cmp -s $f1s $f2s |
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| 344 | if [ $? == 0 ]; then |
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| 345 | if [ $pass == 0 ]; then |
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| 346 | printf "%-5s %s %-5s %s %s %s\n" $rep1 "AGRIF vs" $rep2 "NOAGRIF run.stat unchanged - passed : " $dorv1 $dorv2 |
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| 347 | fi |
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| 348 | else |
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| 349 | printf "%-5s %s %-5s %s %s %s\n" $rep1 "AGRIF vs" $rep2 "NOAGRIF run.stat changed - FAILED : " $dorv1 $dorv2 |
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| 350 | # |
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| 351 | # Offer view of differences on the second pass |
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| 352 | # |
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| 353 | if [ $pass == 1 ]; then |
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| 354 | echo "<return> to view run.stat differences" |
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| 355 | read y |
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| 356 | sdiff $f1s $f2s |
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| 357 | done_oce=1 |
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| 358 | echo "<return> to continue" |
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| 359 | read y |
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| 360 | fi |
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| 361 | fi |
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| 362 | fi |
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| 363 | else |
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| 364 | printf "%-27s %s\n" $dir1 $dir2 " incomplete test"; |
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| 365 | fi |
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| 366 | } |
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| 367 | ########################### END of function definitions ################################# |
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| 368 | ## ## |
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| 369 | ## Main script ## |
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| 370 | ## ## |
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| 371 | ######################################################################################### |
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| 372 | # |
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| 373 | mach=`grep "COMPILER=" ./sette.sh | sed -e 's/COMPILER=//'` |
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| 374 | NEMO_VALID=`grep "NEMO_VALIDATION_DIR=" ./param.cfg | sed -e 's/NEMO_VALIDATION_DIR=//'` |
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| 375 | NEMO_VALID=`eval "echo $NEMO_VALID"` |
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| 376 | # |
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| 377 | if [ ! -d $NEMO_VALID ]; then |
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| 378 | echo "$NEMO_VALID validation directory not found" |
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| 379 | exit |
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| 380 | fi |
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| 381 | # |
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| 382 | # Directory to run the tests |
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| 383 | SETTE_DIR=$(cd $(dirname "$0"); pwd) |
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| 384 | MAIN_DIR=$SETTE_DIR/../.. |
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| 385 | CONFIG_DIR0=${MAIN_DIR}/CONFIG |
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| 386 | TOOLS_DIR=${MAIN_DIR}/TOOLS |
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| 387 | COMPIL_DIR=${TOOLS_DIR}/COMPILE |
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| 388 | NPROC=32 |
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| 389 | SAS_RESTART_DIR=${CONFIG_DIR0}/ORCA2_SAS_SI3_ST |
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| 390 | # |
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| 391 | # Show current revision tag and branch name |
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| 392 | # |
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| 393 | cmd="svn" |
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| 394 | [ ! -d "$MAIN_DIR/.svn" ] && cmd="git $cmd" |
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| 395 | echo $cmd |
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| 396 | echo "$MAIN_DIR/.svn" |
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| 397 | lastchange=`$cmd info ${MAIN_DIR} | grep -i "Last Changed Rev:" | sed -e "s/ //g" | cut -d ":" -f 2` |
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| 398 | revision=`$cmd info | grep Revision | cut -d ":" -f 2 | tr -d ' '` |
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| 399 | branchname=`$cmd info | grep URL | rev | cut -d "/" -f 3 | rev` |
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| 400 | echo "SETTE validation report : $branchname @ r$revision ( last change @ r$lastchange )" |
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| 401 | # |
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| 402 | # The script also needs the date or revision tag. Currently this is taken from the latest sub-directory found in each directory |
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| 403 | # |
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| 404 | for pass in 0 1 |
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| 405 | do |
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| 406 | # |
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| 407 | if [ $pass == 0 ]; then |
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| 408 | echo "" |
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| 409 | echo "!!---------------1st pass------------------!!" |
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| 410 | fi |
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| 411 | if [ $pass == 1 ]; then |
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| 412 | echo "" |
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| 413 | echo "!!---------------2nd pass------------------!!" |
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| 414 | fi |
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| 415 | # |
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| 416 | |
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| 417 | # Rebuild and restartability test for SAS |
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| 418 | # clem: not needed anymore |
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| 419 | # for restart_file in WORCA2_SAS_SI3_ST |
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| 420 | # do |
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| 421 | # restfile $NEMO_VALID $restart_file $pass |
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| 422 | # done |
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| 423 | # |
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| 424 | # Restartability test |
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| 425 | echo "" |
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| 426 | echo " !----restart----! " |
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| 427 | for restart_test in WGYRE_PISCES_ST WORCA2_SI3_PISCES_ST WORCA2_OFF_PISCES_ST WAMM12_ST WORCA2_SAS_SI3_ST WAGRIF_NORDIC_ST WSPITZ12_ST WISOMIP_ST WOVERFLOW_ST WLOCK_EXCHANGE_ST WVORTEX_ST WWAD_ST WSAS_BIPER_ST |
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| 428 | do |
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| 429 | resttest $NEMO_VALID $restart_test $pass |
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| 430 | done |
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| 431 | # |
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| 432 | # Reproducibility tests |
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| 433 | echo "" |
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| 434 | echo " !----repro----! " |
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| 435 | for repro_test in WGYRE_PISCES_ST WORCA2_SI3_PISCES_ST WORCA2_OFF_PISCES_ST WAMM12_ST WORCA2_SAS_SI3_ST WORCA2_SI3_OBS_ST WAGRIF_NORDIC_ST WSPITZ12_ST WISOMIP_ST |
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| 436 | do |
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| 437 | reprotest $NEMO_VALID $repro_test $pass |
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| 438 | runtest $NEMO_VALID $repro_test $pass |
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| 439 | done |
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| 440 | |
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| 441 | # AGRIF special check to ensure results are unchanged with and without key_agrif |
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| 442 | echo "" |
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| 443 | echo " !----agrif check----! " |
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| 444 | dir1=WAGRIF_NORDIC_NOAGRIF_ST |
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| 445 | dir2=WAGRIF_NORDIC_ST |
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| 446 | identictest $NEMO_VALID $dir1 $dir2 $pass |
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| 447 | |
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| 448 | done |
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| 449 | # |
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| 450 | |
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| 451 | exit |
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