1 | MODULE nemogcm |
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2 | !!====================================================================== |
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3 | !! *** MODULE nemogcm *** |
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4 | !! Ocean system : NEMO GCM (ocean dynamics, on-line tracers, biochemistry and sea-ice) |
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5 | !!====================================================================== |
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6 | !! History : OPA ! 1990-10 (C. Levy, G. Madec) Original code |
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7 | !! 7.0 ! 1991-11 (M. Imbard, C. Levy, G. Madec) |
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8 | !! 7.1 ! 1993-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar, |
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9 | !! P. Delecluse, C. Perigaud, G. Caniaux, B. Colot, C. Maes) release 7.1 |
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10 | !! - ! 1992-06 (L.Terray) coupling implementation |
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11 | !! - ! 1993-11 (M.A. Filiberti) IGLOO sea-ice |
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12 | !! 8.0 ! 1996-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar, |
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13 | !! P. Delecluse, L.Terray, M.A. Filiberti, J. Vialar, A.M. Treguier, M. Levy) release 8.0 |
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14 | !! 8.1 ! 1997-06 (M. Imbard, G. Madec) |
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15 | !! 8.2 ! 1999-11 (M. Imbard, H. Goosse) LIM sea-ice model |
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16 | !! ! 1999-12 (V. Thierry, A-M. Treguier, M. Imbard, M-A. Foujols) OPEN-MP |
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17 | !! ! 2000-07 (J-M Molines, M. Imbard) Open Boundary Conditions (CLIPPER) |
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18 | !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and modules |
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19 | !! - ! 2004-06 (R. Redler, NEC CCRLE, Germany) add OASIS[3/4] coupled interfaces |
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20 | !! - ! 2004-08 (C. Talandier) New trends organization |
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21 | !! - ! 2005-06 (C. Ethe) Add the 1D configuration possibility |
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22 | !! - ! 2005-11 (V. Garnier) Surface pressure gradient organization |
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23 | !! - ! 2006-03 (L. Debreu, C. Mazauric) Agrif implementation |
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24 | !! - ! 2006-04 (G. Madec, R. Benshila) Step reorganization |
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25 | !! - ! 2007-07 (J. Chanut, A. Sellar) Unstructured open boundaries (BDY) |
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26 | !! 3.2 ! 2009-08 (S. Masson) open/write in the listing file in mpp |
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27 | !! 3.3 ! 2010-05 (K. Mogensen, A. Weaver, M. Martin, D. Lea) Assimilation interface |
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28 | !! - ! 2010-10 (C. Ethe, G. Madec) reorganisation of initialisation phase |
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29 | !! 3.3.1! 2011-01 (A. R. Porter, STFC Daresbury) dynamical allocation |
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30 | !! 3.4 ! 2011-11 (C. Harris) decomposition changes for running with CICE |
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31 | !! ! 2012-05 (C. Calone, J. Simeon, G. Madec, C. Ethe) Add grid coarsening |
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32 | !!---------------------------------------------------------------------- |
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33 | |
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34 | !!---------------------------------------------------------------------- |
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35 | !! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice |
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36 | !! nemo_init : initialization of the NEMO system |
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37 | !! nemo_ctl : initialisation of the contol print |
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38 | !! nemo_closefile : close remaining open files |
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39 | !! nemo_alloc : dynamical allocation |
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40 | !! nemo_partition : calculate MPP domain decomposition |
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41 | !! factorise : calculate the factors of the no. of MPI processes |
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42 | !!---------------------------------------------------------------------- |
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43 | USE step_oce ! module used in the ocean time stepping module |
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44 | USE cla ! cross land advection (tra_cla routine) |
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45 | USE domcfg ! domain configuration (dom_cfg routine) |
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46 | USE mppini ! shared/distributed memory setting (mpp_init routine) |
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47 | USE domain ! domain initialization (dom_init routine) |
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48 | #if defined key_nemocice_decomp |
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49 | USE ice_domain_size, only: nx_global, ny_global |
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50 | #endif |
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51 | USE tideini ! tidal components initialization (tide_ini routine) |
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52 | USE bdyini ! open boundary cond. setting (bdy_init routine) |
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53 | USE bdydta ! open boundary cond. setting (bdy_dta_init routine) |
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54 | USE bdytides ! open boundary cond. setting (bdytide_init routine) |
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55 | USE istate ! initial state setting (istate_init routine) |
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56 | USE ldfdyn ! lateral viscosity setting (ldfdyn_init routine) |
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57 | USE ldftra ! lateral diffusivity setting (ldftra_init routine) |
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58 | USE zdfini ! vertical physics setting (zdf_init routine) |
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59 | USE phycst ! physical constant (par_cst routine) |
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60 | USE trdini ! dyn/tra trends initialization (trd_init routine) |
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61 | USE asminc ! assimilation increments |
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62 | USE asmbkg ! writing out state trajectory |
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63 | USE diaptr ! poleward transports (dia_ptr_init routine) |
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64 | USE diadct ! sections transports (dia_dct_init routine) |
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65 | USE diaobs ! Observation diagnostics (dia_obs_init routine) |
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66 | USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined) |
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67 | USE step ! NEMO time-stepping (stp routine) |
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68 | USE icbini ! handle bergs, initialisation |
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69 | USE icbstp ! handle bergs, calving, themodynamics and transport |
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70 | USE sbccpl |
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71 | USE cpl_oasis3 ! OASIS3 coupling |
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72 | USE c1d ! 1D configuration |
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73 | USE step_c1d ! Time stepping loop for the 1D configuration |
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74 | USE dyndmp ! Momentum damping |
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75 | #if defined key_top |
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76 | USE trcini ! passive tracer initialisation |
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77 | #endif |
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78 | USE lib_mpp ! distributed memory computing |
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79 | #if defined key_iomput |
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80 | USE xios |
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81 | #endif |
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82 | USE sbctide, ONLY: lk_tide |
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83 | USE crsini ! initialise grid coarsening utility |
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84 | USE lbcnfd, ONLY: isendto, nsndto, nfsloop, nfeloop ! Setup of north fold exchanges |
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85 | |
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86 | IMPLICIT NONE |
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87 | PRIVATE |
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88 | |
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89 | PUBLIC nemo_gcm ! called by model.F90 |
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90 | PUBLIC nemo_init ! needed by AGRIF |
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91 | PUBLIC nemo_alloc ! needed by TAM |
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92 | |
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93 | CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing |
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94 | |
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95 | !!---------------------------------------------------------------------- |
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96 | !! NEMO/OPA 4.0 , NEMO Consortium (2011) |
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97 | !! $Id$ |
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98 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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99 | !!---------------------------------------------------------------------- |
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100 | CONTAINS |
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101 | |
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102 | SUBROUTINE nemo_gcm |
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103 | !!---------------------------------------------------------------------- |
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104 | !! *** ROUTINE nemo_gcm *** |
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105 | !! |
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106 | !! ** Purpose : NEMO solves the primitive equations on an orthogonal |
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107 | !! curvilinear mesh on the sphere. |
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108 | !! |
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109 | !! ** Method : - model general initialization |
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110 | !! - launch the time-stepping (stp routine) |
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111 | !! - finalize the run by closing files and communications |
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112 | !! |
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113 | !! References : Madec, Delecluse, Imbard, and Levy, 1997: internal report, IPSL. |
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114 | !! Madec, 2008, internal report, IPSL. |
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115 | !!---------------------------------------------------------------------- |
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116 | INTEGER :: istp ! time step index |
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117 | !!---------------------------------------------------------------------- |
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118 | ! |
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119 | #if defined key_agrif |
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120 | CALL Agrif_Init_Grids() ! AGRIF: set the meshes |
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121 | #endif |
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122 | |
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123 | ! !-----------------------! |
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124 | CALL nemo_init !== Initialisations ==! |
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125 | ! !-----------------------! |
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126 | #if defined key_agrif |
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127 | CALL Agrif_Declare_Var_dom ! AGRIF: set the meshes for DOM |
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128 | CALL Agrif_Declare_Var ! " " " " " DYN/TRA |
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129 | # if defined key_top |
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130 | CALL Agrif_Declare_Var_top ! " " " " " TOP |
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131 | # endif |
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132 | # if defined key_lim2 |
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133 | CALL Agrif_Declare_Var_lim2 ! " " " " " LIM |
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134 | # endif |
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135 | #endif |
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136 | ! check that all process are still there... If some process have an error, |
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137 | ! they will never enter in step and other processes will wait until the end of the cpu time! |
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138 | IF( lk_mpp ) CALL mpp_max( nstop ) |
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139 | |
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140 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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141 | |
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142 | ! !-----------------------! |
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143 | ! !== time stepping ==! |
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144 | ! !-----------------------! |
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145 | istp = nit000 |
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146 | #if defined key_c1d |
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147 | DO WHILE ( istp <= nitend .AND. nstop == 0 ) |
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148 | CALL stp_c1d( istp ) |
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149 | istp = istp + 1 |
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150 | END DO |
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151 | #else |
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152 | IF( lk_asminc ) THEN |
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153 | IF( ln_bkgwri ) CALL asm_bkg_wri( nit000 - 1 ) ! Output background fields |
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154 | IF( ln_asmdin ) THEN ! Direct initialization |
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155 | IF( ln_trainc ) CALL tra_asm_inc( nit000 - 1 ) ! Tracers |
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156 | IF( ln_dyninc ) CALL dyn_asm_inc( nit000 - 1 ) ! Dynamics |
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157 | IF( ln_sshinc ) CALL ssh_asm_inc( nit000 - 1 ) ! SSH |
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158 | ENDIF |
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159 | ENDIF |
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160 | |
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161 | DO WHILE ( istp <= nitend .AND. nstop == 0 ) |
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162 | #if defined key_agrif |
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163 | CALL Agrif_Step( stp ) ! AGRIF: time stepping |
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164 | #else |
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165 | IF (ln_cpl) CALL sbc_cpl_snd( istp ) ! Coupling to atmos |
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166 | CALL stp( istp ) |
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167 | ! We don't couple on the final timestep because |
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168 | ! our restart file has already been written |
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169 | ! and contains all the necessary data for a |
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170 | ! restart. sbc_cpl_snd could be called here |
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171 | ! but it would require |
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172 | ! a) A test to ensure it was not performed |
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173 | ! on the very last time-step |
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174 | ! b) the presence of another call to |
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175 | ! sbc_cpl_snd call prior to the main DO loop |
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176 | ! This solution produces identical results |
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177 | ! with fewer lines of code. |
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178 | #endif |
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179 | istp = istp + 1 |
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180 | IF( lk_mpp ) CALL mpp_max( nstop ) |
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181 | END DO |
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182 | #endif |
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183 | |
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184 | IF( lk_diaobs ) CALL dia_obs_wri |
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185 | ! |
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186 | IF( ln_icebergs ) CALL icb_end( nitend ) |
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187 | |
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188 | ! !------------------------! |
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189 | ! !== finalize the run ==! |
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190 | ! !------------------------! |
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191 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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192 | ! |
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193 | IF( nstop /= 0 .AND. lwp ) THEN ! error print |
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194 | WRITE(numout,cform_err) |
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195 | WRITE(numout,*) nstop, ' error have been found' |
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196 | ENDIF |
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197 | ! |
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198 | #if defined key_agrif |
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199 | CALL Agrif_ParentGrid_To_ChildGrid() |
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200 | IF( lk_diaobs ) CALL dia_obs_wri |
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201 | IF( nn_timing == 1 ) CALL timing_finalize |
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202 | CALL Agrif_ChildGrid_To_ParentGrid() |
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203 | #endif |
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204 | IF( nn_timing == 1 ) CALL timing_finalize |
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205 | ! |
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206 | CALL nemo_closefile |
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207 | ! |
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208 | #if defined key_iomput |
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209 | CALL xios_finalize ! end mpp communications with xios |
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210 | IF( lk_cpl ) CALL cpl_finalize ! end coupling and mpp communications with OASIS |
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211 | #else |
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212 | IF( lk_cpl ) THEN |
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213 | CALL cpl_finalize ! end coupling and mpp communications with OASIS |
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214 | ELSE |
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215 | IF( lk_mpp ) CALL mppstop ! end mpp communications |
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216 | ENDIF |
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217 | #endif |
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218 | ! |
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219 | END SUBROUTINE nemo_gcm |
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220 | |
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221 | |
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222 | SUBROUTINE nemo_init |
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223 | !!---------------------------------------------------------------------- |
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224 | !! *** ROUTINE nemo_init *** |
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225 | !! |
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226 | !! ** Purpose : initialization of the NEMO GCM |
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227 | !!---------------------------------------------------------------------- |
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228 | INTEGER :: ji ! dummy loop indices |
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229 | INTEGER :: ilocal_comm ! local integer |
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230 | INTEGER :: ios |
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231 | CHARACTER(len=80), DIMENSION(16) :: cltxt |
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232 | ! |
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233 | NAMELIST/namctl/ ln_ctl , nn_print, nn_ictls, nn_ictle, & |
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234 | & nn_isplt, nn_jsplt, nn_jctls, nn_jctle, & |
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235 | & nn_bench, nn_timing |
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236 | NAMELIST/namcfg/ cp_cfg, cp_cfz, jp_cfg, jpidta, jpjdta, jpkdta, jpiglo, jpjglo, & |
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237 | & jpizoom, jpjzoom, jperio |
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238 | !!---------------------------------------------------------------------- |
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239 | ! |
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240 | cltxt = '' |
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241 | ! |
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242 | ! ! Open reference namelist and configuration namelist files |
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243 | CALL ctl_opn( numnam_ref, 'namelist_ref', 'OLD', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE. ) |
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244 | CALL ctl_opn( numnam_cfg, 'namelist_cfg', 'OLD', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE. ) |
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245 | ! |
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246 | REWIND( numnam_ref ) ! Namelist namctl in reference namelist : Control prints & Benchmark |
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247 | READ ( numnam_ref, namctl, IOSTAT = ios, ERR = 901 ) |
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248 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in reference namelist', .TRUE. ) |
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249 | |
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250 | REWIND( numnam_cfg ) ! Namelist namctl in confguration namelist : Control prints & Benchmark |
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251 | READ ( numnam_cfg, namctl, IOSTAT = ios, ERR = 902 ) |
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252 | 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in configuration namelist', .TRUE. ) |
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253 | |
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254 | ! |
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255 | REWIND( numnam_ref ) ! Namelist namcfg in reference namelist : Control prints & Benchmark |
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256 | READ ( numnam_ref, namcfg, IOSTAT = ios, ERR = 903 ) |
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257 | 903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in reference namelist', .TRUE. ) |
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258 | |
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259 | REWIND( numnam_cfg ) ! Namelist namcfg in confguration namelist : Control prints & Benchmark |
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260 | READ ( numnam_cfg, namcfg, IOSTAT = ios, ERR = 904 ) |
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261 | 904 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in configuration namelist', .TRUE. ) |
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262 | |
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263 | ! Force values for AGRIF zoom (cf. agrif_user.F90) |
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264 | #if defined key_agrif |
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265 | IF( .NOT. Agrif_Root() ) THEN |
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266 | jpiglo = nbcellsx + 2 + 2*nbghostcells |
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267 | jpjglo = nbcellsy + 2 + 2*nbghostcells |
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268 | jpi = ( jpiglo-2*jpreci + (jpni-1+0) ) / jpni + 2*jpreci |
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269 | jpj = ( jpjglo-2*jprecj + (jpnj-1+0) ) / jpnj + 2*jprecj |
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270 | jpidta = jpiglo |
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271 | jpjdta = jpjglo |
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272 | jpizoom = 1 |
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273 | jpjzoom = 1 |
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274 | nperio = 0 |
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275 | jperio = 0 |
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276 | ENDIF |
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277 | #endif |
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278 | ! |
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279 | ! !--------------------------------------------! |
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280 | ! ! set communicator & select the local node ! |
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281 | ! ! NB: mynode also opens output.namelist.dyn ! |
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282 | ! ! on unit number numond on first proc ! |
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283 | ! !--------------------------------------------! |
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284 | #if defined key_iomput |
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285 | IF( Agrif_Root() ) THEN |
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286 | IF( lk_cpl ) THEN |
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287 | CALL cpl_init( ilocal_comm ) ! nemo local communicator given by oasis |
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288 | CALL xios_initialize( "oceanx",local_comm=ilocal_comm ) ! send nemo communicator to xios |
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289 | ELSE |
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290 | CALL xios_initialize( "nemo",return_comm=ilocal_comm ) ! nemo local communicator given by xios |
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291 | ENDIF |
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292 | ENDIF |
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293 | narea = mynode( cltxt, numnam_ref, numnam_cfg, numond , nstop, ilocal_comm ) ! Nodes selection |
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294 | #else |
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295 | IF( lk_cpl ) THEN |
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296 | IF( Agrif_Root() ) THEN |
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297 | CALL cpl_init( ilocal_comm ) ! nemo local communicator given by oasis |
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298 | ENDIF |
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299 | narea = mynode( cltxt, numnam_ref, numnam_cfg, numond , nstop, ilocal_comm ) ! Nodes selection (control print return in cltxt) |
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300 | ELSE |
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301 | ilocal_comm = 0 |
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302 | narea = mynode( cltxt, numnam_ref, numnam_cfg, numond , nstop ) ! Nodes selection (control print return in cltxt) |
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303 | ENDIF |
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304 | #endif |
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305 | narea = narea + 1 ! mynode return the rank of proc (0 --> jpnij -1 ) |
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306 | |
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307 | lwm = (narea == 1) ! control of output namelists |
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308 | lwp = (narea == 1) .OR. ln_ctl ! control of all listing output print |
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309 | |
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310 | IF(lwm) THEN |
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311 | ! write merged namelists from earlier to output namelist now that the |
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312 | ! file has been opened in call to mynode. nammpp has already been |
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313 | ! written in mynode (if lk_mpp_mpi) |
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314 | WRITE( numond, namctl ) |
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315 | WRITE( numond, namcfg ) |
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316 | ENDIF |
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317 | |
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318 | ! If dimensions of processor grid weren't specified in the namelist file |
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319 | ! then we calculate them here now that we have our communicator size |
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320 | IF( (jpni < 1) .OR. (jpnj < 1) )THEN |
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321 | #if defined key_mpp_mpi |
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322 | IF( Agrif_Root() ) CALL nemo_partition(mppsize) |
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323 | #else |
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324 | jpni = 1 |
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325 | jpnj = 1 |
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326 | jpnij = jpni*jpnj |
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327 | #endif |
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328 | END IF |
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329 | |
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330 | ! Calculate domain dimensions given calculated jpni and jpnj |
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331 | ! This used to be done in par_oce.F90 when they were parameters rather |
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332 | ! than variables |
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333 | IF( Agrif_Root() ) THEN |
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334 | #if defined key_nemocice_decomp |
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335 | jpi = ( nx_global+2-2*jpreci + (jpni-1) ) / jpni + 2*jpreci ! first dim. |
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336 | jpj = ( ny_global+2-2*jprecj + (jpnj-1) ) / jpnj + 2*jprecj ! second dim. |
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337 | #else |
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338 | jpi = ( jpiglo-2*jpreci + (jpni-1) ) / jpni + 2*jpreci ! first dim. |
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339 | jpj = ( jpjglo-2*jprecj + (jpnj-1) ) / jpnj + 2*jprecj ! second dim. |
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340 | #endif |
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341 | ENDIF |
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342 | jpk = jpkdta ! third dim |
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343 | jpim1 = jpi-1 ! inner domain indices |
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344 | jpjm1 = jpj-1 ! " " |
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345 | jpkm1 = jpk-1 ! " " |
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346 | jpij = jpi*jpj ! jpi x j |
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347 | |
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348 | IF(lwp) THEN ! open listing units |
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349 | ! |
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350 | CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE., narea ) |
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351 | ! |
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352 | WRITE(numout,*) |
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353 | WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - INGV - CMCC' |
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354 | WRITE(numout,*) ' NEMO team' |
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355 | WRITE(numout,*) ' Ocean General Circulation Model' |
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356 | WRITE(numout,*) ' version 3.4 (2011) ' |
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357 | WRITE(numout,*) |
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358 | WRITE(numout,*) |
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359 | DO ji = 1, SIZE(cltxt) |
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360 | IF( TRIM(cltxt(ji)) /= '' ) WRITE(numout,*) cltxt(ji) ! control print of mynode |
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361 | END DO |
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362 | WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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363 | ! |
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364 | ENDIF |
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365 | |
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366 | ! Now we know the dimensions of the grid and numout has been set we can |
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367 | ! allocate arrays |
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368 | CALL nemo_alloc() |
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369 | |
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370 | ! !-------------------------------! |
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371 | ! ! NEMO general initialization ! |
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372 | ! !-------------------------------! |
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373 | |
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374 | CALL nemo_ctl ! Control prints & Benchmark |
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375 | |
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376 | ! ! Domain decomposition |
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377 | IF( jpni*jpnj == jpnij ) THEN ; CALL mpp_init ! standard cutting out |
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378 | ELSE ; CALL mpp_init2 ! eliminate land processors |
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379 | ENDIF |
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380 | ! |
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381 | IF( nn_timing == 1 ) CALL timing_init |
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382 | ! |
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383 | ! ! General initialization |
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384 | CALL phy_cst ! Physical constants |
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385 | CALL eos_init ! Equation of state |
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386 | IF( lk_c1d ) CALL c1d_init ! 1D column configuration |
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387 | CALL dom_cfg ! Domain configuration |
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388 | CALL dom_init ! Domain |
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389 | |
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390 | IF( ln_nnogather ) CALL nemo_northcomms ! Initialise the northfold neighbour lists (must be done after the masks are defined) |
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391 | |
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392 | IF( ln_ctl ) CALL prt_ctl_init ! Print control |
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393 | |
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394 | CALL istate_init ! ocean initial state (Dynamics and tracers) |
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395 | |
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396 | IF( lk_tide ) CALL tide_init( nit000 ) ! Initialisation of the tidal harmonics |
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397 | |
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398 | IF( lk_bdy ) CALL bdy_init ! Open boundaries initialisation |
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399 | IF( lk_bdy ) CALL bdy_dta_init ! Open boundaries initialisation of external data arrays |
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400 | IF( lk_bdy .AND. lk_tide ) & |
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401 | & CALL bdytide_init ! Open boundaries initialisation of tidal harmonic forcing |
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402 | |
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403 | CALL dyn_nept_init ! simplified form of Neptune effect |
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404 | |
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405 | ! |
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406 | IF( ln_crs ) CALL crs_init ! Domain initialization of coarsened grid |
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407 | ! |
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408 | ! Ocean physics |
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409 | CALL sbc_init ! Forcings : surface module |
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410 | ! ! Vertical physics |
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411 | CALL zdf_init ! namelist read |
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412 | CALL zdf_bfr_init ! bottom friction |
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413 | IF( lk_zdfric ) CALL zdf_ric_init ! Richardson number dependent Kz |
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414 | IF( lk_zdftke ) CALL zdf_tke_init ! TKE closure scheme |
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415 | IF( lk_zdfgls ) CALL zdf_gls_init ! GLS closure scheme |
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416 | IF( lk_zdfkpp ) CALL zdf_kpp_init ! KPP closure scheme |
---|
417 | IF( lk_zdftmx ) CALL zdf_tmx_init ! tidal vertical mixing |
---|
418 | IF( lk_zdfddm .AND. .NOT. lk_zdfkpp ) & |
---|
419 | & CALL zdf_ddm_init ! double diffusive mixing |
---|
420 | ! ! Lateral physics |
---|
421 | CALL ldf_tra_init ! Lateral ocean tracer physics |
---|
422 | CALL ldf_dyn_init ! Lateral ocean momentum physics |
---|
423 | IF( lk_ldfslp ) CALL ldf_slp_init ! slope of lateral mixing |
---|
424 | |
---|
425 | ! ! Active tracers |
---|
426 | CALL tra_qsr_init ! penetrative solar radiation qsr |
---|
427 | CALL tra_bbc_init ! bottom heat flux |
---|
428 | IF( lk_trabbl ) CALL tra_bbl_init ! advective (and/or diffusive) bottom boundary layer scheme |
---|
429 | CALL tra_dmp_init ! internal damping trends- tracers |
---|
430 | CALL tra_adv_init ! horizontal & vertical advection |
---|
431 | CALL tra_ldf_init ! lateral mixing |
---|
432 | CALL tra_zdf_init ! vertical mixing and after tracer fields |
---|
433 | |
---|
434 | ! ! Dynamics |
---|
435 | IF( lk_c1d ) CALL dyn_dmp_init ! internal damping trends- momentum |
---|
436 | CALL dyn_adv_init ! advection (vector or flux form) |
---|
437 | CALL dyn_vor_init ! vorticity term including Coriolis |
---|
438 | CALL dyn_ldf_init ! lateral mixing |
---|
439 | CALL dyn_hpg_init ! horizontal gradient of Hydrostatic pressure |
---|
440 | CALL dyn_zdf_init ! vertical diffusion |
---|
441 | CALL dyn_spg_init ! surface pressure gradient |
---|
442 | |
---|
443 | ! ! Misc. options |
---|
444 | IF( nn_cla == 1 .AND. cp_cfg == 'orca' .AND. jp_cfg == 2 ) CALL cla_init ! Cross Land Advection |
---|
445 | CALL icb_init( rdt, nit000) ! initialise icebergs instance |
---|
446 | |
---|
447 | #if defined key_top |
---|
448 | ! ! Passive tracers |
---|
449 | CALL trc_init |
---|
450 | #endif |
---|
451 | ! ! Diagnostics |
---|
452 | IF( lk_floats ) CALL flo_init ! drifting Floats |
---|
453 | IF( lk_diaar5 ) CALL dia_ar5_init ! ar5 diag |
---|
454 | CALL dia_ptr_init ! Poleward TRansports initialization |
---|
455 | IF( lk_diadct ) CALL dia_dct_init ! Sections tranports |
---|
456 | CALL dia_hsb_init ! heat content, salt content and volume budgets |
---|
457 | CALL trd_init ! Mixed-layer/Vorticity/Integral constraints trends |
---|
458 | IF( lk_diaobs ) THEN ! Observation & model comparison |
---|
459 | CALL dia_obs_init ! Initialize observational data |
---|
460 | CALL dia_obs( nit000 - 1 ) ! Observation operator for restart |
---|
461 | ENDIF |
---|
462 | |
---|
463 | ! ! Assimilation increments |
---|
464 | IF( lk_asminc ) CALL asm_inc_init ! Initialize assimilation increments |
---|
465 | IF(lwp) WRITE(numout,*) 'Euler time step switch is ', neuler |
---|
466 | ! |
---|
467 | END SUBROUTINE nemo_init |
---|
468 | |
---|
469 | |
---|
470 | SUBROUTINE nemo_ctl |
---|
471 | !!---------------------------------------------------------------------- |
---|
472 | !! *** ROUTINE nemo_ctl *** |
---|
473 | !! |
---|
474 | !! ** Purpose : control print setting |
---|
475 | !! |
---|
476 | !! ** Method : - print namctl information and check some consistencies |
---|
477 | !!---------------------------------------------------------------------- |
---|
478 | ! |
---|
479 | IF(lwp) THEN ! control print |
---|
480 | WRITE(numout,*) |
---|
481 | WRITE(numout,*) 'nemo_ctl: Control prints & Benchmark' |
---|
482 | WRITE(numout,*) '~~~~~~~ ' |
---|
483 | WRITE(numout,*) ' Namelist namctl' |
---|
484 | WRITE(numout,*) ' run control (for debugging) ln_ctl = ', ln_ctl |
---|
485 | WRITE(numout,*) ' level of print nn_print = ', nn_print |
---|
486 | WRITE(numout,*) ' Start i indice for SUM control nn_ictls = ', nn_ictls |
---|
487 | WRITE(numout,*) ' End i indice for SUM control nn_ictle = ', nn_ictle |
---|
488 | WRITE(numout,*) ' Start j indice for SUM control nn_jctls = ', nn_jctls |
---|
489 | WRITE(numout,*) ' End j indice for SUM control nn_jctle = ', nn_jctle |
---|
490 | WRITE(numout,*) ' number of proc. following i nn_isplt = ', nn_isplt |
---|
491 | WRITE(numout,*) ' number of proc. following j nn_jsplt = ', nn_jsplt |
---|
492 | WRITE(numout,*) ' benchmark parameter (0/1) nn_bench = ', nn_bench |
---|
493 | WRITE(numout,*) ' timing activated (0/1) nn_timing = ', nn_timing |
---|
494 | ENDIF |
---|
495 | ! |
---|
496 | nprint = nn_print ! convert DOCTOR namelist names into OLD names |
---|
497 | nictls = nn_ictls |
---|
498 | nictle = nn_ictle |
---|
499 | njctls = nn_jctls |
---|
500 | njctle = nn_jctle |
---|
501 | isplt = nn_isplt |
---|
502 | jsplt = nn_jsplt |
---|
503 | nbench = nn_bench |
---|
504 | |
---|
505 | IF(lwp) THEN ! control print |
---|
506 | WRITE(numout,*) |
---|
507 | WRITE(numout,*) 'namcfg : configuration initialization through namelist read' |
---|
508 | WRITE(numout,*) '~~~~~~~ ' |
---|
509 | WRITE(numout,*) ' Namelist namcfg' |
---|
510 | WRITE(numout,*) ' configuration name cp_cfg = ', TRIM(cp_cfg) |
---|
511 | WRITE(numout,*) ' configuration zoom name cp_cfz = ', TRIM(cp_cfz) |
---|
512 | WRITE(numout,*) ' configuration resolution jp_cfg = ', jp_cfg |
---|
513 | WRITE(numout,*) ' 1st lateral dimension ( >= jpi ) jpidta = ', jpidta |
---|
514 | WRITE(numout,*) ' 2nd " " ( >= jpj ) jpjdta = ', jpjdta |
---|
515 | WRITE(numout,*) ' 3nd " " jpkdta = ', jpkdta |
---|
516 | WRITE(numout,*) ' 1st dimension of global domain in i jpiglo = ', jpiglo |
---|
517 | WRITE(numout,*) ' 2nd - - in j jpjglo = ', jpjglo |
---|
518 | WRITE(numout,*) ' left bottom i index of the zoom (in data domain) jpizoom = ', jpizoom |
---|
519 | WRITE(numout,*) ' left bottom j index of the zoom (in data domain) jpizoom = ', jpjzoom |
---|
520 | WRITE(numout,*) ' lateral cond. type (between 0 and 6) jperio = ', jperio |
---|
521 | ENDIF |
---|
522 | ! ! Parameter control |
---|
523 | ! |
---|
524 | IF( ln_ctl ) THEN ! sub-domain area indices for the control prints |
---|
525 | IF( lk_mpp .AND. jpnij > 1 ) THEN |
---|
526 | isplt = jpni ; jsplt = jpnj ; ijsplt = jpni*jpnj ! the domain is forced to the real split domain |
---|
527 | ELSE |
---|
528 | IF( isplt == 1 .AND. jsplt == 1 ) THEN |
---|
529 | CALL ctl_warn( ' - isplt & jsplt are equal to 1', & |
---|
530 | & ' - the print control will be done over the whole domain' ) |
---|
531 | ENDIF |
---|
532 | ijsplt = isplt * jsplt ! total number of processors ijsplt |
---|
533 | ENDIF |
---|
534 | IF(lwp) WRITE(numout,*)' - The total number of processors over which the' |
---|
535 | IF(lwp) WRITE(numout,*)' print control will be done is ijsplt : ', ijsplt |
---|
536 | ! |
---|
537 | ! ! indices used for the SUM control |
---|
538 | IF( nictls+nictle+njctls+njctle == 0 ) THEN ! print control done over the default area |
---|
539 | lsp_area = .FALSE. |
---|
540 | ELSE ! print control done over a specific area |
---|
541 | lsp_area = .TRUE. |
---|
542 | IF( nictls < 1 .OR. nictls > jpiglo ) THEN |
---|
543 | CALL ctl_warn( ' - nictls must be 1<=nictls>=jpiglo, it is forced to 1' ) |
---|
544 | nictls = 1 |
---|
545 | ENDIF |
---|
546 | IF( nictle < 1 .OR. nictle > jpiglo ) THEN |
---|
547 | CALL ctl_warn( ' - nictle must be 1<=nictle>=jpiglo, it is forced to jpiglo' ) |
---|
548 | nictle = jpiglo |
---|
549 | ENDIF |
---|
550 | IF( njctls < 1 .OR. njctls > jpjglo ) THEN |
---|
551 | CALL ctl_warn( ' - njctls must be 1<=njctls>=jpjglo, it is forced to 1' ) |
---|
552 | njctls = 1 |
---|
553 | ENDIF |
---|
554 | IF( njctle < 1 .OR. njctle > jpjglo ) THEN |
---|
555 | CALL ctl_warn( ' - njctle must be 1<=njctle>=jpjglo, it is forced to jpjglo' ) |
---|
556 | njctle = jpjglo |
---|
557 | ENDIF |
---|
558 | ENDIF |
---|
559 | ENDIF |
---|
560 | ! |
---|
561 | IF( nbench == 1 ) THEN ! Benchmark |
---|
562 | SELECT CASE ( cp_cfg ) |
---|
563 | CASE ( 'gyre' ) ; CALL ctl_warn( ' The Benchmark is activated ' ) |
---|
564 | CASE DEFAULT ; CALL ctl_stop( ' The Benchmark is based on the GYRE configuration:', & |
---|
565 | & ' cp_cfg = "gyre" in namelist &namcfg or set nbench = 0' ) |
---|
566 | END SELECT |
---|
567 | ENDIF |
---|
568 | ! |
---|
569 | IF( 1_wp /= SIGN(1._wp,-0._wp) ) CALL ctl_stop( 'nemo_ctl: The intrinsec SIGN function follows ', & |
---|
570 | & 'f2003 standard. ' , & |
---|
571 | & 'Compile with key_nosignedzero enabled' ) |
---|
572 | ! |
---|
573 | END SUBROUTINE nemo_ctl |
---|
574 | |
---|
575 | |
---|
576 | SUBROUTINE nemo_closefile |
---|
577 | !!---------------------------------------------------------------------- |
---|
578 | !! *** ROUTINE nemo_closefile *** |
---|
579 | !! |
---|
580 | !! ** Purpose : Close the files |
---|
581 | !!---------------------------------------------------------------------- |
---|
582 | ! |
---|
583 | IF( lk_mpp ) CALL mppsync |
---|
584 | ! |
---|
585 | CALL iom_close ! close all input/output files managed by iom_* |
---|
586 | ! |
---|
587 | IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file |
---|
588 | IF( numsol /= -1 ) CLOSE( numsol ) ! solver file |
---|
589 | IF( numnam_ref /= -1 ) CLOSE( numnam_ref ) ! oce reference namelist |
---|
590 | IF( numnam_cfg /= -1 ) CLOSE( numnam_cfg ) ! oce configuration namelist |
---|
591 | IF( lwm.AND.numond /= -1 ) CLOSE( numond ) ! oce output namelist |
---|
592 | IF( numnam_ice_ref /= -1 ) CLOSE( numnam_ice_ref ) ! ice reference namelist |
---|
593 | IF( numnam_ice_cfg /= -1 ) CLOSE( numnam_ice_cfg ) ! ice configuration namelist |
---|
594 | IF( lwm.AND.numoni /= -1 ) CLOSE( numoni ) ! ice output namelist |
---|
595 | IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution) |
---|
596 | IF( numout /= 6 ) CLOSE( numout ) ! standard model output file |
---|
597 | IF( numdct_vol /= -1 ) CLOSE( numdct_vol ) ! volume transports |
---|
598 | IF( numdct_heat /= -1 ) CLOSE( numdct_heat ) ! heat transports |
---|
599 | IF( numdct_salt /= -1 ) CLOSE( numdct_salt ) ! salt transports |
---|
600 | |
---|
601 | ! |
---|
602 | numout = 6 ! redefine numout in case it is used after this point... |
---|
603 | ! |
---|
604 | END SUBROUTINE nemo_closefile |
---|
605 | |
---|
606 | |
---|
607 | SUBROUTINE nemo_alloc |
---|
608 | !!---------------------------------------------------------------------- |
---|
609 | !! *** ROUTINE nemo_alloc *** |
---|
610 | !! |
---|
611 | !! ** Purpose : Allocate all the dynamic arrays of the OPA modules |
---|
612 | !! |
---|
613 | !! ** Method : |
---|
614 | !!---------------------------------------------------------------------- |
---|
615 | USE diawri , ONLY: dia_wri_alloc |
---|
616 | USE dom_oce , ONLY: dom_oce_alloc |
---|
617 | USE ldfdyn_oce, ONLY: ldfdyn_oce_alloc |
---|
618 | USE ldftra_oce, ONLY: ldftra_oce_alloc |
---|
619 | USE trc_oce , ONLY: trc_oce_alloc |
---|
620 | #if defined key_diadct |
---|
621 | USE diadct , ONLY: diadct_alloc |
---|
622 | #endif |
---|
623 | #if defined key_bdy |
---|
624 | USE bdy_oce , ONLY: bdy_oce_alloc |
---|
625 | #endif |
---|
626 | ! |
---|
627 | INTEGER :: ierr |
---|
628 | !!---------------------------------------------------------------------- |
---|
629 | ! |
---|
630 | ierr = oce_alloc () ! ocean |
---|
631 | ierr = ierr + dia_wri_alloc () |
---|
632 | ierr = ierr + dom_oce_alloc () ! ocean domain |
---|
633 | ierr = ierr + ldfdyn_oce_alloc() ! ocean lateral physics : dynamics |
---|
634 | ierr = ierr + ldftra_oce_alloc() ! ocean lateral physics : tracers |
---|
635 | ierr = ierr + zdf_oce_alloc () ! ocean vertical physics |
---|
636 | ! |
---|
637 | ierr = ierr + trc_oce_alloc () ! shared TRC / TRA arrays |
---|
638 | ! |
---|
639 | #if defined key_diadct |
---|
640 | ierr = ierr + diadct_alloc () ! |
---|
641 | #endif |
---|
642 | #if defined key_bdy |
---|
643 | ierr = ierr + bdy_oce_alloc () ! bdy masks (incl. initialization) |
---|
644 | #endif |
---|
645 | ! |
---|
646 | IF( lk_mpp ) CALL mpp_sum( ierr ) |
---|
647 | IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc : unable to allocate standard ocean arrays' ) |
---|
648 | ! |
---|
649 | END SUBROUTINE nemo_alloc |
---|
650 | |
---|
651 | |
---|
652 | SUBROUTINE nemo_partition( num_pes ) |
---|
653 | !!---------------------------------------------------------------------- |
---|
654 | !! *** ROUTINE nemo_partition *** |
---|
655 | !! |
---|
656 | !! ** Purpose : |
---|
657 | !! |
---|
658 | !! ** Method : |
---|
659 | !!---------------------------------------------------------------------- |
---|
660 | INTEGER, INTENT(in) :: num_pes ! The number of MPI processes we have |
---|
661 | ! |
---|
662 | INTEGER, PARAMETER :: nfactmax = 20 |
---|
663 | INTEGER :: nfact ! The no. of factors returned |
---|
664 | INTEGER :: ierr ! Error flag |
---|
665 | INTEGER :: ji |
---|
666 | INTEGER :: idiff, mindiff, imin ! For choosing pair of factors that are closest in value |
---|
667 | INTEGER, DIMENSION(nfactmax) :: ifact ! Array of factors |
---|
668 | !!---------------------------------------------------------------------- |
---|
669 | ! |
---|
670 | ierr = 0 |
---|
671 | ! |
---|
672 | CALL factorise( ifact, nfactmax, nfact, num_pes, ierr ) |
---|
673 | ! |
---|
674 | IF( nfact <= 1 ) THEN |
---|
675 | WRITE (numout, *) 'WARNING: factorisation of number of PEs failed' |
---|
676 | WRITE (numout, *) ' : using grid of ',num_pes,' x 1' |
---|
677 | jpnj = 1 |
---|
678 | jpni = num_pes |
---|
679 | ELSE |
---|
680 | ! Search through factors for the pair that are closest in value |
---|
681 | mindiff = 1000000 |
---|
682 | imin = 1 |
---|
683 | DO ji = 1, nfact-1, 2 |
---|
684 | idiff = ABS( ifact(ji) - ifact(ji+1) ) |
---|
685 | IF( idiff < mindiff ) THEN |
---|
686 | mindiff = idiff |
---|
687 | imin = ji |
---|
688 | ENDIF |
---|
689 | END DO |
---|
690 | jpnj = ifact(imin) |
---|
691 | jpni = ifact(imin + 1) |
---|
692 | ENDIF |
---|
693 | ! |
---|
694 | jpnij = jpni*jpnj |
---|
695 | ! |
---|
696 | END SUBROUTINE nemo_partition |
---|
697 | |
---|
698 | |
---|
699 | SUBROUTINE factorise( kfax, kmaxfax, knfax, kn, kerr ) |
---|
700 | !!---------------------------------------------------------------------- |
---|
701 | !! *** ROUTINE factorise *** |
---|
702 | !! |
---|
703 | !! ** Purpose : return the prime factors of n. |
---|
704 | !! knfax factors are returned in array kfax which is of |
---|
705 | !! maximum dimension kmaxfax. |
---|
706 | !! ** Method : |
---|
707 | !!---------------------------------------------------------------------- |
---|
708 | INTEGER , INTENT(in ) :: kn, kmaxfax |
---|
709 | INTEGER , INTENT( out) :: kerr, knfax |
---|
710 | INTEGER, DIMENSION(kmaxfax), INTENT( out) :: kfax |
---|
711 | ! |
---|
712 | INTEGER :: ifac, jl, inu |
---|
713 | INTEGER, PARAMETER :: ntest = 14 |
---|
714 | INTEGER :: ilfax(ntest) |
---|
715 | ! |
---|
716 | ! lfax contains the set of allowed factors. |
---|
717 | data (ilfax(jl),jl=1,ntest) / 16384, 8192, 4096, 2048, 1024, 512, 256, & |
---|
718 | & 128, 64, 32, 16, 8, 4, 2 / |
---|
719 | !!---------------------------------------------------------------------- |
---|
720 | |
---|
721 | ! Clear the error flag and initialise output vars |
---|
722 | kerr = 0 |
---|
723 | kfax = 1 |
---|
724 | knfax = 0 |
---|
725 | |
---|
726 | ! Find the factors of n. |
---|
727 | IF( kn == 1 ) GOTO 20 |
---|
728 | |
---|
729 | ! nu holds the unfactorised part of the number. |
---|
730 | ! knfax holds the number of factors found. |
---|
731 | ! l points to the allowed factor list. |
---|
732 | ! ifac holds the current factor. |
---|
733 | |
---|
734 | inu = kn |
---|
735 | knfax = 0 |
---|
736 | |
---|
737 | DO jl = ntest, 1, -1 |
---|
738 | ! |
---|
739 | ifac = ilfax(jl) |
---|
740 | IF( ifac > inu ) CYCLE |
---|
741 | |
---|
742 | ! Test whether the factor will divide. |
---|
743 | |
---|
744 | IF( MOD(inu,ifac) == 0 ) THEN |
---|
745 | ! |
---|
746 | knfax = knfax + 1 ! Add the factor to the list |
---|
747 | IF( knfax > kmaxfax ) THEN |
---|
748 | kerr = 6 |
---|
749 | write (*,*) 'FACTOR: insufficient space in factor array ', knfax |
---|
750 | return |
---|
751 | ENDIF |
---|
752 | kfax(knfax) = ifac |
---|
753 | ! Store the other factor that goes with this one |
---|
754 | knfax = knfax + 1 |
---|
755 | kfax(knfax) = inu / ifac |
---|
756 | !WRITE (*,*) 'ARPDBG, factors ',knfax-1,' & ',knfax,' are ', kfax(knfax-1),' and ',kfax(knfax) |
---|
757 | ENDIF |
---|
758 | ! |
---|
759 | END DO |
---|
760 | |
---|
761 | 20 CONTINUE ! Label 20 is the exit point from the factor search loop. |
---|
762 | ! |
---|
763 | END SUBROUTINE factorise |
---|
764 | |
---|
765 | #if defined key_mpp_mpi |
---|
766 | |
---|
767 | SUBROUTINE nemo_northcomms |
---|
768 | !!====================================================================== |
---|
769 | !! *** ROUTINE nemo_northcomms *** |
---|
770 | !! nemo_northcomms : Setup for north fold exchanges with explicit |
---|
771 | !! point-to-point messaging |
---|
772 | !!===================================================================== |
---|
773 | !!---------------------------------------------------------------------- |
---|
774 | !! |
---|
775 | !! ** Purpose : Initialization of the northern neighbours lists. |
---|
776 | !!---------------------------------------------------------------------- |
---|
777 | !! 1.0 ! 2011-10 (A. C. Coward, NOCS & J. Donners, PRACE) |
---|
778 | !! 2.0 ! 2013-06 Setup avoiding MPI communication (I. Epicoco, S. Mocavero, CMCC) |
---|
779 | !!---------------------------------------------------------------------- |
---|
780 | |
---|
781 | INTEGER :: sxM, dxM, sxT, dxT, jn |
---|
782 | INTEGER :: njmppmax |
---|
783 | |
---|
784 | njmppmax = MAXVAL( njmppt ) |
---|
785 | |
---|
786 | !initializes the north-fold communication variables |
---|
787 | isendto(:) = 0 |
---|
788 | nsndto = 0 |
---|
789 | |
---|
790 | !if I am a process in the north |
---|
791 | IF ( njmpp == njmppmax ) THEN |
---|
792 | !sxM is the first point (in the global domain) needed to compute the |
---|
793 | !north-fold for the current process |
---|
794 | sxM = jpiglo - nimppt(narea) - nlcit(narea) + 1 |
---|
795 | !dxM is the last point (in the global domain) needed to compute the |
---|
796 | !north-fold for the current process |
---|
797 | dxM = jpiglo - nimppt(narea) + 2 |
---|
798 | |
---|
799 | !loop over the other north-fold processes to find the processes |
---|
800 | !managing the points belonging to the sxT-dxT range |
---|
801 | |
---|
802 | DO jn = 1, jpni |
---|
803 | !sxT is the first point (in the global domain) of the jn |
---|
804 | !process |
---|
805 | sxT = nfiimpp(jn, jpnj) |
---|
806 | !dxT is the last point (in the global domain) of the jn |
---|
807 | !process |
---|
808 | dxT = nfiimpp(jn, jpnj) + nfilcit(jn, jpnj) - 1 |
---|
809 | IF ((sxM .gt. sxT) .AND. (sxM .lt. dxT)) THEN |
---|
810 | nsndto = nsndto + 1 |
---|
811 | isendto(nsndto) = jn |
---|
812 | ELSEIF ((sxM .le. sxT) .AND. (dxM .ge. dxT)) THEN |
---|
813 | nsndto = nsndto + 1 |
---|
814 | isendto(nsndto) = jn |
---|
815 | ELSEIF ((dxM .lt. dxT) .AND. (sxT .lt. dxM)) THEN |
---|
816 | nsndto = nsndto + 1 |
---|
817 | isendto(nsndto) = jn |
---|
818 | END IF |
---|
819 | END DO |
---|
820 | nfsloop = 1 |
---|
821 | nfeloop = nlci |
---|
822 | DO jn = 2,jpni-1 |
---|
823 | IF(nfipproc(jn,jpnj) .eq. (narea - 1)) THEN |
---|
824 | IF (nfipproc(jn - 1 ,jpnj) .eq. -1) THEN |
---|
825 | nfsloop = nldi |
---|
826 | ENDIF |
---|
827 | IF (nfipproc(jn + 1,jpnj) .eq. -1) THEN |
---|
828 | nfeloop = nlei |
---|
829 | ENDIF |
---|
830 | ENDIF |
---|
831 | END DO |
---|
832 | |
---|
833 | ENDIF |
---|
834 | l_north_nogather = .TRUE. |
---|
835 | END SUBROUTINE nemo_northcomms |
---|
836 | #else |
---|
837 | SUBROUTINE nemo_northcomms ! Dummy routine |
---|
838 | WRITE(*,*) 'nemo_northcomms: You should not have seen this print! error?' |
---|
839 | END SUBROUTINE nemo_northcomms |
---|
840 | #endif |
---|
841 | |
---|
842 | !!====================================================================== |
---|
843 | END MODULE nemogcm |
---|
844 | |
---|
845 | |
---|