1 | #!/bin/bash |
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2 | ###################################################### |
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3 | # Author : Simona Flavoni for NEMO |
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4 | # Contact : sflod@locean-ipsl.upmc.fr |
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5 | # |
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6 | # Some scripts called by sette.sh |
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7 | # fcm_job.sh : simple job to run NEMO with fcm |
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8 | ###################################################### |
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9 | #set -x |
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10 | set -o posix |
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11 | #set -u |
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12 | #set -e |
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13 | #+ |
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14 | # |
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15 | # ================ |
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16 | # fcm_job.sh |
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17 | # ================ |
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18 | # |
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19 | # -------------------------- |
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20 | # Simple job for NEMO tests |
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21 | # -------------------------- |
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22 | # |
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23 | # SYNOPSIS |
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24 | # ======== |
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25 | # |
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26 | # :: |
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27 | # |
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28 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
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29 | # |
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30 | # |
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31 | # DESCRIPTION |
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32 | # =========== |
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33 | # |
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34 | # |
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35 | # Simple job for SET TESTS for NEMO (SETTE) |
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36 | # |
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37 | # |
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38 | # EXAMPLES |
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39 | # ======== |
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40 | # |
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41 | # :: |
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42 | # |
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43 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
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44 | # |
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45 | # |
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46 | # TODO |
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47 | # ==== |
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48 | # |
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49 | # option debug |
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50 | # |
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51 | # |
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52 | # EVOLUTIONS |
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53 | # ========== |
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54 | # |
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55 | # $Id: fcm_job.sh 2158 2010-10-20 17:30:03Z sflod $ |
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56 | # |
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57 | # |
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58 | # |
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59 | # * creation |
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60 | # |
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61 | #- |
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62 | # |
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63 | # SET INPUT |
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64 | #-- get the input tarfile if needed |
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65 | tar_file=$(sed -ne "1,1p" $1) |
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66 | if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then |
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67 | cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/. |
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68 | cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar ; gunzip *gz |
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69 | fi |
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70 | |
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71 | if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then |
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72 | cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice |
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73 | elif [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then |
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74 | cp ${INPUT_DIR}/namelist_ice_lim3 ${INPUT_DIR}/namelist_ice |
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75 | fi |
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76 | |
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77 | |
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78 | if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then |
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79 | #- Namelist for ocean and ice (agrif fine grid) |
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80 | cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice |
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81 | fi |
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82 | ################################################################ |
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83 | |
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84 | ################################################################ |
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85 | # RUN OPA |
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86 | cd ${INPUT_DIR} |
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87 | NB_PROC=$2 |
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88 | if [ ${NB_PROC} == 1 ] ; then |
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89 | ./opa |
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90 | else |
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91 | # example for brodie (NEC SX8) machine |
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92 | mpirun -np ${NB_PROC} opa |
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93 | # example for dedale machine |
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94 | # mpirun --mca btl self,tcp -np ${NB_PROC} opa |
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95 | # example for vargas (IBM Power6) machine |
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96 | # mpiexec -n ${NB_PROC} opa |
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97 | fi |
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98 | ################################################################ |
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99 | |
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100 | ################################################################ |
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101 | ## -- Save output files |
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102 | |
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103 | #- Save ocean output files |
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104 | [ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR} |
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105 | [ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/. |
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106 | [ -f *solver.stat ] && mv *solver.stat ${OUTPUT_DIR}/. |
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107 | [ -n "$(ls *_grid_*)" ] && mv *_grid_*.nc ${OUTPUT_DIR}/. |
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108 | [ -f restart* ] && cp restart* ${OUTPUT_DIR}/. |
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109 | [ -f ice_evolu ] && mv ice_evolu ${OUTPUT_DIR}/. |
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110 | [ -n "$(ls *icemod*)" ] && mv *icemod* ${OUTPUT_DIR}/. |
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111 | #- Save ftrace file |
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112 | [ -f ftrace.out* ] && cp ftrace.out* ${OUTPUT_DIR}/. |
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113 | ################################################################ |
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114 | |
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