1 | <?xml version="1.0"?> |
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2 | <simulation> |
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3 | |
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4 | <context id="nemo"> |
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5 | |
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6 | <!-- $id$ --> |
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7 | |
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8 | <!-- |
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9 | ============================================================================================================ |
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10 | = definition of all existing variables = |
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11 | = DO NOT CHANGE = |
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12 | ============================================================================================================ |
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13 | --> |
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14 | |
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15 | <field_definition level="1" prec="4" operation="ave(X)" enabled=".TRUE."> <!-- time step automaticaly defined --> |
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16 | |
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17 | <!-- ptrc on T grid --> |
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18 | |
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19 | <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> |
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20 | <field id="DIC" description="Dissolved inorganic Concentration" unit="mol-C/L" /> |
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21 | <field id="Alkalini" description="Total Alkalinity Concentration" unit="eq/L" /> |
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22 | <field id="O2" description="Oxygen Concentration" unit="mol-C/L" /> |
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23 | <field id="CaCO3" description="Calcite Concentration" unit="mol-C/L" /> |
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24 | <field id="PO4" description="Phosphate Concentration" unit="mol-C/L" /> |
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25 | <field id="POC" description="Small organic carbon Concentration" unit="mol-C/L" /> |
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26 | <field id="Si" description="Silicate Concentration" unit="mol-C/L" /> |
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27 | <field id="PHY" description="Nanophytoplankton Concentration" unit="mol-C/L" /> |
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28 | <field id="ZOO" description="Microzooplankton Concentration" unit="mol-C/L" /> |
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29 | <field id="DOC" description="Dissolved organic Concentration" unit="mol-C/L" /> |
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30 | <field id="PHY2" description="Diatoms Concentration" unit="mol-C/L" /> |
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31 | <field id="ZOO2" description="Mesozooplankton Concentration" unit="mol-C/L" /> |
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32 | <field id="BSi" description="Diatoms Silicate Concentration" unit="mol-C/L" /> |
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33 | <field id="Fer" description="Dissolved Iron Concentration" unit="mol-C/L" /> |
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34 | <field id="BFe" description="Big iron particles Concentration" unit="mol-C/L" /> |
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35 | <field id="GOC" description="Big organic carbon Concentration" unit="mol-C/L" /> |
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36 | <field id="SFe" description="Small iron particles Concentration" unit="mol-C/L" /> |
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37 | <field id="DFe" description="Diatoms iron Concentration" unit="mol-C/L" /> |
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38 | <field id="DSi" description="Sinking biogenic Silicate Concentration" unit="mol-C/L" /> |
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39 | <field id="NFe" description="Nano iron Concentration" unit="mol-C/L" /> |
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40 | <field id="NCHL" description="Nano chlorophyl Concentration" unit="mol-C/L" /> |
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41 | <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mol-C/L" /> |
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42 | <field id="NO3" description="Nitrates Concentration" unit="mol-C/L" /> |
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43 | <field id="NH4" description="Ammonium Concentration" unit="mol-C/L" /> |
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44 | </group> |
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45 | |
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46 | <!-- diad on T grid --> |
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47 | |
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48 | <group id="diad_T" axis_ref="none" grid_ref="grid_T"> |
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49 | <field id="PH" description="PH" unit="-" axis_ref="deptht" /> |
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50 | <field id="CO3" description="Bicarbonates" unit="mol/L" axis_ref="deptht" /> |
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51 | <field id="CO3sat" description="CO3 saturation" unit="mol/L" axis_ref="deptht" /> |
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52 | <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> |
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53 | <field id="PPPHY" description="Primary production of nanophyto" unit="mol-C/m3/s" axis_ref="deptht" /> |
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54 | <field id="PPPHY2" description="Primary production of diatoms" unit="mol-C/m3/s" axis_ref="deptht" /> |
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55 | <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol-C/m3/s" axis_ref="deptht" /> |
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56 | <field id="PPNEWD" description="New Primary production of diatoms" unit="mol-C/m3/s" axis_ref="deptht" /> |
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57 | <field id="PBSi" description="Primary production of Si diatoms" unit="mol-Si/m3/s" axis_ref="deptht" /> |
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58 | <field id="PFeN" description="Primary production of nano iron" unit="mol-Fe/m3/s" axis_ref="deptht" /> |
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59 | <field id="PFeD" description="Primary production of diatoms iron" unit="mol-Fe/m3/s" axis_ref="deptht" /> |
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60 | <field id="Pcal" description="Calcite production" unit="mol-C/m3/s" axis_ref="deptht" /> |
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61 | <field id="Dcal" description="Calcite dissolution" unit="mol-C/m3/s" axis_ref="deptht" /> |
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62 | <field id="Graz" description="Grazing by microzoo" unit="mol-C/m3/s" axis_ref="deptht" /> |
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63 | <field id="Graz2" description="Grazing by mesozoo" unit="mol-C/m3/s" axis_ref="deptht" /> |
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64 | <field id="Nfix" description="Nitrogen fixation" unit="mol-N/m2/s" axis_ref="deptht" /> |
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65 | <field id="ExpPOC" description="POC export" unit="mol-C/m2/s" axis_ref="deptht" /> |
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66 | <field id="ExpGOC" description="GOC export" unit="mol-C/m2/s" axis_ref="deptht" /> |
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67 | <field id="ExpFe1" description="Nano iron export" unit="mol-Fe/m2/s" axis_ref="deptht" /> |
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68 | <field id="ExpFe2" description="Diatoms iron export" unit="mol-Fe/m2/s" axis_ref="deptht" /> |
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69 | <field id="ExpSi" description="Silicate export" unit="mol-Si/m2/s" axis_ref="deptht" /> |
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70 | <field id="Expcal" description="Calcite export" unit="mol-C/m2/s" axis_ref="deptht" /> |
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71 | <field id="Cflx" description="DIC flux" unit="mol-C/m2/s" /> |
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72 | <field id="Oflx" description="Oxygen flux" unit="mol-C/m2/s" /> |
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73 | <field id="Kg" description="Gas transfer" unit="mol-C/m2/s/uatm" /> |
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74 | <field id="Dpco2" description="Delta CO2" unit="uatm" /> |
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75 | <field id="Dpo2" description="Delta O2" unit="uatm" /> |
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76 | <field id="Heup" description="Euphotic layer depth" unit="m" /> |
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77 | <field id="Irondep" description="Iron deposition" unit="mol-Fe/m2/s" /> |
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78 | </group> |
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79 | |
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80 | <!-- scalar --> |
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81 | |
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82 | <group id="scalar" axis_ref="none" grid_ref="scalarpoint" zoom_ref="1point" > |
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83 | </group> |
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84 | |
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85 | </field_definition> |
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86 | |
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87 | <!-- |
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88 | ============================================================================================================ |
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89 | = output files definition = |
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90 | = Define your own files = |
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91 | = put the variables you want... = |
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92 | ============================================================================================================ |
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93 | --> |
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94 | |
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95 | <file_definition output_level="10" enabled=".TRUE."> |
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96 | |
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97 | <group id="1d" output_freq="86400" output_level="10" enabled=".TRUE."> <!-- 1d files --> |
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98 | </group> |
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99 | |
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100 | <group id="5d" output_freq="432000" output_level="10" enabled=".TRUE."> <!-- 5d files --> |
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101 | |
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102 | <file id="5d_diad_T" name="auto" description="additional pisces diagnostics" > |
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103 | <field ref="Cflx" /> |
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104 | <field ref="Oflx" /> |
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105 | <field ref="Dpco2" /> |
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106 | <field ref="Dpo2" /> |
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107 | <field ref="Heup" /> |
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108 | </file> |
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109 | |
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110 | </group> |
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111 | |
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112 | <group id="1m" output_freq="-1" output_level="10" enabled=".TRUE."> <!-- real monthly files --> |
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113 | |
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114 | <file id="1m_ptrc_T" name="auto" description="pisces sms variables" > |
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115 | <field ref="DIC" /> |
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116 | <field ref="Alkalini" /> |
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117 | <field ref="O2" /> |
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118 | <field ref="NCHL" /> |
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119 | <field ref="DCHL" /> |
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120 | <field ref="Fer" /> |
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121 | <field ref="NO3" /> |
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122 | </file> |
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123 | |
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124 | </group> |
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125 | |
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126 | <group id="2m" output_freq="-2" output_level="10" enabled=".TRUE."> <!-- real 2m files --> |
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127 | </group> |
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128 | |
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129 | <group id="3m" output_freq="-3" output_level="10" enabled=".TRUE."> <!-- real 3m files --> |
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130 | </group> |
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131 | |
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132 | <group id="4m" output_freq="-4" output_level="10" enabled=".TRUE."> <!-- real 4m files --> |
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133 | </group> |
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134 | |
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135 | <group id="6m" output_freq="-6" output_level="10" enabled=".TRUE."> <!-- real 6m files --> |
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136 | </group> |
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137 | |
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138 | <group id="1y" output_freq="-12" output_level="10" enabled=".TRUE."> <!-- real yearly files --> |
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139 | |
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140 | <file id="1y_ptrc_T" name="auto" description="pisces sms variables" > |
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141 | <field ref="DIC" /> |
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142 | <field ref="Alkalini" /> |
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143 | <field ref="O2" /> |
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144 | <field ref="CaCO3" /> |
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145 | <field ref="PO4" /> |
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146 | <field ref="POC" /> |
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147 | <field ref="Si" /> |
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148 | <field ref="PHY" /> |
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149 | <field ref="ZOO" /> |
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150 | <field ref="DOC" /> |
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151 | <field ref="PHY2" /> |
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152 | <field ref="ZOO2" /> |
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153 | <field ref="BSi" /> |
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154 | <field ref="Fer" /> |
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155 | <field ref="BFe" /> |
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156 | <field ref="GOC" /> |
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157 | <field ref="SFe" /> |
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158 | <field ref="DFe" /> |
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159 | <field ref="DSi" /> |
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160 | <field ref="NFe" /> |
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161 | <field ref="NCHL" /> |
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162 | <field ref="DCHL" /> |
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163 | <field ref="NO3" /> |
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164 | <field ref="NH4" /> |
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165 | </file> |
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166 | |
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167 | <file id="1y_diad_T" name="auto" description="additional pisces diagnostics" > |
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168 | <field ref="PH" /> |
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169 | <field ref="CO3" /> |
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170 | <field ref="CO3sat" /> |
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171 | <field ref="PAR" /> |
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172 | <field ref="PPPHY" /> |
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173 | <field ref="PPPHY2" /> |
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174 | <field ref="PPNEWN" /> |
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175 | <field ref="PPNEWD" /> |
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176 | <field ref="PBSi" /> |
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177 | <field ref="PFeN" /> |
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178 | <field ref="PFeD" /> |
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179 | <field ref="Pcal" /> |
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180 | <field ref="Dcal" /> |
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181 | <field ref="Graz" /> |
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182 | <field ref="Graz2" /> |
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183 | <field ref="Cflx" /> |
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184 | <field ref="ExpPOC" /> |
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185 | <field ref="ExpGOC" /> |
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186 | <field ref="ExpFe1" /> |
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187 | <field ref="ExpFe2" /> |
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188 | <field ref="ExpSi" /> |
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189 | <field ref="Expcal" /> |
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190 | <field ref="Oflx" /> |
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191 | <field ref="Kg" /> |
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192 | <field ref="Dpco2" /> |
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193 | <field ref="Dpo2" /> |
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194 | <field ref="Heup" /> |
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195 | <field ref="Irondep" /> |
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196 | <field ref="Nfix" /> |
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197 | </file> |
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198 | |
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199 | </group> |
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200 | |
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201 | <group id="2y" output_freq="-24" output_level="10" enabled=".TRUE."> <!-- real 2y files --> |
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202 | </group> |
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203 | |
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204 | <group id="5y" output_freq="-60" output_level="10" enabled=".TRUE."> <!-- real 5y files --> |
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205 | </group> |
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206 | |
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207 | <group id="10y" output_freq="-120" output_level="10" enabled=".TRUE."> <!-- real 10y files --> |
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208 | </group> |
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209 | |
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210 | </file_definition> |
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211 | |
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212 | <!-- |
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213 | ============================================================================================================ |
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214 | = grid definition = |
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215 | = DO NOT CHANGE = |
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216 | ============================================================================================================ |
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217 | --> |
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218 | |
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219 | <axis_definition> |
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220 | <axis id="deptht" description="Vertical T levels" unit="m" positive=".false." /> |
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221 | <axis id="depthu" description="Vertical U levels" unit="m" positive=".false." /> |
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222 | <axis id="depthv" description="Vertical V levels" unit="m" positive=".false." /> |
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223 | <axis id="depthw" description="Vertical W levels" unit="m" positive=".false." /> |
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224 | <axis id="none" description="axe non defini" unit="none" size="1" /> |
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225 | </axis_definition> |
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226 | |
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227 | <grid_definition> |
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228 | <grid id="grid_T" description="grid T" /> |
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229 | <grid id="grid_U" description="grid U" /> |
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230 | <grid id="grid_V" description="grid V" /> |
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231 | <grid id="grid_W" description="grid W" /> |
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232 | <grid id="scalarpoint" description="scalar" > |
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233 | <zoom id="1point" ibegin="1" jbegin="1" ni="1" nj="1" /> |
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234 | </grid> |
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235 | </grid_definition> |
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236 | |
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237 | </context> |
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238 | |
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239 | </simulation> |
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