| 1 | !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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| 2 | !! PISCES : 1 - air-sea exchange (nampisext) |
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| 3 | !! namelists 2 - biological parameters (nampisbio) |
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| 4 | !! 3 - parameters for nutrient limitations (nampislim) |
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| 5 | !! 4 - parameters for phytoplankton (nampisprod,nampismort) |
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| 6 | !! 5 - parameters for zooplankton (nampismes,nampiszoo) |
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| 7 | !! 6 - parameters for remineralization (nampisrem) |
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| 8 | !! 7 - parameters for calcite chemistry (nampiscal) |
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| 9 | !! 8 - parameters for inputs deposition (nampissed) |
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| 10 | !! 9 - parameters for Kriest parameterization (nampiskrp, nampiskrs) |
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| 11 | !! 10 - additional 2D/3D diagnostics (nampisdia) |
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| 12 | !! 11 - Damping (nampisdmp) |
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| 13 | !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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| 14 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 15 | &nampisext ! air-sea exchange |
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| 16 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 17 | ln_co2int = .false. ! read atm pco2 from a file (T) or constant (F) |
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| 18 | atcco2 = 287. ! Constant value atmospheric pCO2 - ln_co2int = F |
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| 19 | clname = 'atcco2.txt' ! Name of atm pCO2 file - ln_co2int = T |
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| 20 | nn_offset = 0 ! Offset model-data start year - ln_co2int = T |
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| 21 | ! ! If your model year is iyy, nn_offset=(years(1)-iyy) |
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| 22 | ! ! then the first atmospheric CO2 record read is at years(1) |
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| 23 | / |
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| 24 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 25 | &nampisatm ! Atmospheric prrssure |
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| 26 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 27 | ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! |
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| 28 | ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! |
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| 29 | sn_patm = 'presatm' , -1 , 'patm' , .true. , .true. , 'yearly' , '' , '' |
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| 30 | cn_dir = './' ! root directory for the location of the dynamical files |
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| 31 | ! |
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| 32 | ln_presatm = .true. ! constant atmopsheric pressure (F) or from a file (T) |
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| 33 | / |
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| 34 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 35 | &nampisbio ! biological parameters |
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| 36 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 37 | nrdttrc = 4 ! time step frequency for biology |
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| 38 | wsbio = 2. ! POC sinking speed |
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| 39 | xkmort = 1.E-7 ! half saturation constant for mortality |
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| 40 | ferat3 = 10.E-6 ! Fe/C in zooplankton |
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| 41 | wsbio2 = 30. ! Big particles sinking speed |
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| 42 | / |
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| 43 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 44 | &nampislim ! parameters for nutrient limitations |
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| 45 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 46 | conc0 = 2.e-6 ! Phosphate half saturation |
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| 47 | conc1 = 8E-6 ! Phosphate half saturation for diatoms |
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| 48 | conc2 = 2E-9 ! Iron half saturation for phyto |
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| 49 | conc2m = 4E-9 ! Max iron half saturation for phyto |
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| 50 | conc3 = 3E-9 ! Iron half saturation for diatoms |
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| 51 | conc3m = 9E-9 ! Maxi iron half saturation for diatoms |
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| 52 | xsizedia = 5.E-7 ! Minimum size criteria for diatoms |
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| 53 | xsizephy = 1.E-6 ! Minimum size criteria for phyto |
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| 54 | concnnh4 = 1.E-7 ! NH4 half saturation for phyto |
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| 55 | concdnh4 = 4.E-7 ! NH4 half saturation for diatoms |
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| 56 | xksi1 = 2.E-6 ! half saturation constant for Si uptake |
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| 57 | xksi2 = 3.33E-6 ! half saturation constant for Si/C |
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| 58 | xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization |
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| 59 | concfebac = 3.E-11 ! Half-saturation for Fe limitation of Bacteria |
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| 60 | qnfelim = 7.E-6 ! Optimal quota of phyto |
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| 61 | qdfelim = 7.E-6 ! Optimal quota of diatoms |
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| 62 | caco3r = 0.16 ! mean rain ratio |
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| 63 | / |
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| 64 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 65 | &nampisprod ! parameters for phytoplankton growth |
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| 66 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 67 | pislope = 3. ! P-I slope |
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| 68 | pislope2 = 2. ! P-I slope for diatoms |
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| 69 | excret = 0.05 ! excretion ratio of phytoplankton |
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| 70 | excret2 = 0.05 ! excretion ratio of diatoms |
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| 71 | ln_newprod = .false. ! Enable new parame. of production (T/F) |
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| 72 | bresp = 0.00333 ! Basal respiration rate |
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| 73 | chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton |
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| 74 | chlcdm = 0.04 ! Minimum Chl/C in diatoms |
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| 75 | chlcmin = 0.0033 ! Maximum Chl/c in phytoplankton |
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| 76 | fecnm = 40E-6 ! Maximum Fe/C in nanophytoplankton |
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| 77 | fecdm = 40E-6 ! Minimum Fe/C in diatoms |
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| 78 | grosip = 0.151 ! mean Si/C ratio |
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| 79 | / |
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| 80 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 81 | &nampismort ! parameters for phytoplankton sinks |
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| 82 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 83 | wchl = 0.001 ! quadratic mortality of phytoplankton |
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| 84 | wchld = 0.02 ! maximum quadratic mortality of diatoms |
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| 85 | mprat = 0.01 ! phytoplankton mortality rate |
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| 86 | mprat2 = 0.01 ! Diatoms mortality rate |
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| 87 | mpratm = 0.01 ! Phytoplankton minimum mortality rate |
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| 88 | / |
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| 89 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 90 | &nampismes ! parameters for mesozooplankton |
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| 91 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 92 | part2 = 0.75 ! part of calcite not dissolved in mesozoo guts |
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| 93 | grazrat2 = 0.7 ! maximal mesozoo grazing rate |
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| 94 | resrat2 = 0.005 ! exsudation rate of mesozooplankton |
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| 95 | mzrat2 = 0.03 ! mesozooplankton mortality rate |
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| 96 | xprefc = 1. ! zoo preference for phyto |
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| 97 | xprefp = 0.3 ! zoo preference for POC |
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| 98 | xprefz = 1. ! zoo preference for zoo |
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| 99 | xprefpoc = 0.3 ! zoo preference for poc |
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| 100 | xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton |
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| 101 | xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton |
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| 102 | xthresh2phy = 2E-7 ! nanophyto feeding threshold for mesozooplankton |
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| 103 | xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton |
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| 104 | xthresh2 = 0. ! Food threshold for grazing |
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| 105 | xkgraz2 = 20.E-6 ! half sturation constant for meso grazing |
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| 106 | epsher2 = 0.33 ! Efficicency of Mesozoo growth |
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| 107 | sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM |
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| 108 | unass2 = 0.3 ! non assimilated fraction of P by mesozoo |
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| 109 | grazflux = 3.e3 ! flux-feeding rate |
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| 110 | / |
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| 111 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 112 | &nampiszoo ! parameters for microzooplankton |
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| 113 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 114 | part = 0.5 ! part of calcite not dissolved in microzoo gutsa |
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| 115 | grazrat = 3.0 ! maximal zoo grazing rate |
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| 116 | resrat = 0.03 ! exsudation rate of zooplankton |
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| 117 | mzrat = 0.0 ! zooplankton mortality rate |
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| 118 | xpref2c = 0.1 ! Microzoo preference for POM |
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| 119 | xpref2p = 1. ! Microzoo preference for Nanophyto |
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| 120 | xpref2d = 0.6 ! Microzoo preference for Diatoms |
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| 121 | xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton |
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| 122 | xthreshphy = 2.E-7 ! Nanophyto feeding threshold for microzooplankton |
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| 123 | xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton |
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| 124 | xthresh = 0. ! Food threshold for feeding |
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| 125 | xkgraz = 20.E-6 ! half sturation constant for grazing |
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| 126 | epsher = 0.33 ! Efficiency of microzoo growth |
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| 127 | sigma1 = 0.6 ! Fraction of microzoo excretion as DOM |
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| 128 | unass = 0.3 ! non assimilated fraction of phyto by zoo |
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| 129 | / |
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| 130 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 131 | &nampisrem ! parameters for remineralization |
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| 132 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 133 | xremik = 0.25 ! remineralization rate of DOC |
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| 134 | xremip = 0.025 ! remineralisation rate of POC |
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| 135 | nitrif = 0.05 ! NH4 nitrification rate |
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| 136 | xsirem = 0.003 ! remineralization rate of Si |
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| 137 | xsiremlab = 0.025 ! fast remineralization rate of Si |
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| 138 | xsilab = 0.31 ! Fraction of labile biogenic silica |
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| 139 | xlam1 = 0.005 ! scavenging rate of Iron |
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| 140 | oxymin = 1.E-6 ! Half-saturation constant for anoxia |
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| 141 | ligand = 0.6E-9 ! Ligands concentration |
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| 142 | / |
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| 143 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 144 | &nampiscal ! parameters for Calcite chemistry |
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| 145 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 146 | kdca = 6. ! calcite dissolution rate constant (1/time) |
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| 147 | nca = 1. ! order of dissolution reaction (dimensionless) |
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| 148 | / |
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| 149 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 150 | &nampissed ! parameters for inputs deposition |
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| 151 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 152 | ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! |
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| 153 | ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! |
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| 154 | sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' |
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| 155 | sn_riverdic = 'river.orca' , -12 , 'riverdic' , .false. , .true. , 'yearly' , '' , '' |
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| 156 | sn_riverdoc = 'river.orca' , -12 , 'riverdoc' , .false. , .true. , 'yearly' , '' , '' |
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| 157 | sn_ndepo = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' |
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| 158 | sn_ironsed = 'bathy.orca' , -12 , 'bathy' , .false. , .true. , 'yearly' , '' , '' |
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| 159 | ! |
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| 160 | cn_dir = './' ! root directory for the location of the dynamical files |
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| 161 | ln_dust = .true. ! boolean for dust input from the atmosphere |
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| 162 | ln_river = .true. ! boolean for river input of nutrients |
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| 163 | ln_ndepo = .true. ! boolean for atmospheric deposition of N |
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| 164 | ln_ironsed = .true. ! boolean for Fe input from sediments |
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| 165 | sedfeinput = 1E-9 ! Coastal release of Iron |
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| 166 | dustsolub = 0.02 ! Solubility of the dust |
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| 167 | wdust = 2.0 ! Dust sinking speed |
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| 168 | nitrfix = 1E-7 ! Nitrogen fixation rate |
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| 169 | diazolight = 50. ! Diazotrophs sensitivity to light (W/m2) |
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| 170 | concfediaz = 1.E-10 ! Diazotrophs half-saturation Cste for Iron |
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| 171 | / |
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| 172 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 173 | &nampiskrp ! Kriest parameterization : parameters "key_kriest" |
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| 174 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 175 | xkr_eta = 1.17 ! Sinking exponent |
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| 176 | xkr_zeta = 2.28 ! N content exponent |
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| 177 | xkr_mass_min = 0.0002 ! Minimum mass for Aggregates |
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| 178 | xkr_mass_max = 1. ! Maximum mass for Aggregates |
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| 179 | / |
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| 180 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 181 | &nampiskrs ! Kriest parameterization : size classes "key_kriest" |
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| 182 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 183 | xkr_sfact = 942. ! Sinking factor |
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| 184 | xkr_stick = 0.5 ! Stickiness |
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| 185 | xkr_nnano = 2.337 ! Nbr of cell in nano size class |
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| 186 | xkr_ndiat = 3.718 ! Nbr of cell in diatoms size class |
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| 187 | xkr_nmeso = 7.147 ! Nbr of cell in mesozoo size class |
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| 188 | xkr_naggr = 9.877 ! Nbr of cell in aggregates size class |
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| 189 | / |
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| 190 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 191 | &nampisdia ! additional 2D/3D tracers diagnostics |
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| 192 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 193 | ! ! name ! title of the field ! units ! |
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| 194 | ! ! ! ! ! |
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| 195 | pisdia2d(1) = 'Cflx ' , 'DIC flux ', 'molC/m2/s ' |
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| 196 | pisdia2d(2) = 'Oflx ' , 'Oxygen flux ', 'molC/m2/s ' |
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| 197 | pisdia2d(3) = 'Kg ' , 'Gas transfer ', 'mol/m2/s/uatm' |
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| 198 | pisdia2d(4) = 'Delc ' , 'Delta CO2 ', 'uatm ' |
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| 199 | pisdia2d(5) = 'PMO ' , 'POC export ', 'molC/m2/s ' |
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| 200 | pisdia2d(6) = 'PMO2 ' , 'GOC export ', 'molC/m2/s ' |
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| 201 | pisdia2d(7) = 'ExpFe1 ' , 'Nano iron export ', 'molFe/m2/s ' |
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| 202 | pisdia2d(8) = 'ExpFe2 ' , 'Diatoms iron export ', 'molFe/m2/s ' |
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| 203 | pisdia2d(9) = 'ExpSi ' , 'Silicate export ', 'molSi/m2/s ' |
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| 204 | pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export ', 'molC/m2/s ' |
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| 205 | pisdia2d(11) = 'heup ' , 'euphotic layer depth ', 'm ' |
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| 206 | pisdia2d(12) = 'Fedep ' , 'Iron dep ', 'molFe/m2/s ' |
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| 207 | pisdia2d(13) = 'Nfix ' , 'Nitrogen Fixation ', 'molN/m2/s ' |
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| 208 | pisdia3d(1) = 'PH ' , 'PH ', '- ' |
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| 209 | pisdia3d(2) = 'CO3 ' , 'Bicarbonates ', 'mol/l ' |
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| 210 | pisdia3d(3) = 'CO3sat ' , 'CO3 saturation ', 'mol/l ' |
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| 211 | pisdia3d(4) = 'PAR ' , 'light penetration ', 'W/m2 ' |
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| 212 | pisdia3d(5) = 'PPPHY ' , 'Primary production of nanophyto ', 'molC/m3/s ' |
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| 213 | pisdia3d(6) = 'PPPHY2 ' , 'Primary production of diatoms ', 'molC/m3/s ' |
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| 214 | pisdia3d(7) = 'PPNEWN ' , 'New Primary production of nano ', 'molC/m3/s ' |
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| 215 | pisdia3d(8) = 'PPNEWD ' , 'New Primary production of diat ', 'molC/m3/s ' |
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| 216 | pisdia3d(9) = 'PBSi ' , 'Primary production of Si diatoms ', 'molSi/m3/s ' |
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| 217 | pisdia3d(10) = 'PFeN ' , 'Primary production of nano iron ', 'molFe/m3/s ' |
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| 218 | pisdia3d(11) = 'PFeD ' , 'Primary production of diatoms iron', 'molFe/m3/s ' |
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| 219 | / |
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| 220 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 221 | &nampisdmp ! Damping |
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| 222 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 223 | ln_pisdmp = .true. ! Relaxation fo some tracers to a mean value |
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| 224 | nn_pisdmp = 1460 ! Frequency of Relaxation |
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| 225 | / |
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| 226 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 227 | &nampismass ! Mass conservation |
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| 228 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 229 | ln_check_mass = .false. ! Check mass conservation |
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| 230 | / |
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