1 | #!/bin/bash -f |
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2 | #set -vx |
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3 | # |
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4 | # simple SETTE report generator. |
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5 | # |
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6 | # This version should be run in the SETTE directory. |
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7 | # The machine name will be picked up from the sette.sh script but the location of the |
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8 | # validation directory needs to be set here (currently assumed to reside in the ../CONFIG directory) |
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9 | # |
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10 | ######################################################################################### |
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11 | ######################### Start of function definitions ################################# |
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12 | ## |
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13 | |
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14 | function restfile() { |
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15 | # Rebuild ice restart for SAS CONFIG, and restartability checks. Expects LONG and SHORT run directories. |
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16 | # For Stand Alone Surface configuration ocean is not running, just run ice model; so no outputs ocean files. |
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17 | # Compares LONG rebuild restart ice file with equivalent entry from the SHORT rebuild restart ice file. |
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18 | # |
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19 | # check nco module loaded, and load it if not |
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20 | if [ ! $( echo $LOADEDMODULES | grep cdo ) ]; then module load cdo >& /dev/null ; fi |
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21 | # |
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22 | vdir=$1 |
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23 | nam=$2 |
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24 | pass=$3 |
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25 | # |
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26 | if [ -d $vdir/$nam ]; then |
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27 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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28 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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29 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -2l | head -1 ` |
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30 | rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -1l` |
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31 | cd ${SAS_RESTART_DIR}/LONG |
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32 | #SF add here compilation of rebuild_tools to rebuild restart files, and add comparison of restart files |
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33 | cd ${TOOLS_DIR} |
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34 | ./maketools -n REBUILD_NEMO -m ${mach} > /dev/null 2>&1 |
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35 | cd ${TOOLS_DIR}/REBUILD_NEMO |
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36 | #SF echo "REBUILD LONG restart SAS files, without standard output" |
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37 | ./rebuild_nemo -t 4 ../../CONFIG/SAS_ST/LONG/SAS_00000240_restart_ice $NPROC > /dev/null 2>&1 |
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38 | #SF echo "REBUILD SHORT restart SAS files, without standard output" |
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39 | ./rebuild_nemo -t 4 ../../CONFIG/SAS_ST/SHORT/SAS_00000240_restart_ice $NPROC >&- |
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40 | cd ${SAS_RESTART_DIR}/LONG |
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41 | #SF echo "COPY rebuild restart files" |
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42 | cp SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/LONG/. |
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43 | cp ../SHORT/SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/SHORT/. |
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44 | |
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45 | f1o=$vdir/$nam/$mach/$dorv/LONG/SAS_00000240_restart_ice.nc |
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46 | f2o=$vdir/$nam/$mach/$dorv/SHORT/SAS_00000240_restart_ice.nc |
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47 | if [ ! -f $f1o ] && [ ! -f $f2o ] ; then |
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48 | printf "%-20s %s\n" $nam " REBUILD SAS restart ice DOES NOT exists; incomplete test"; |
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49 | return; |
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50 | fi |
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51 | # |
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52 | done_oce=0 |
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53 | # |
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54 | if [ -f $f1o ] && [ -f $f2o ]; then |
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55 | ## Compare the two netcdf files |
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56 | cdo diffn $f1o $f2o \ |
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57 | > cdo_diff.out 2> /dev/null |
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58 | ## echo cdo_diff.out |
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59 | ## Identical if first character of $dif ==0 |
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60 | [ ! -s cdo_diff.out ] && continue |
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61 | dif=$( grep -om1 '[0-9]* of [0-9]* records differ' cdo_diff.out ) |
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62 | |
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63 | if [ -n "$dif" ]; then |
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64 | difi=`echo $dif | cut -c -1` |
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65 | fi |
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66 | \rm cdo_diff.out |
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67 | |
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68 | if [ $difi == 0 ]; then |
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69 | if [ $pass == 0 ]; then |
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70 | printf "%-20s %s %s\n" $nam " SAS restart files are IDENTICAL : passed : " $dorv |
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71 | fi |
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72 | else |
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73 | printf "%-20s %s %s\n" $nam " SAS restart files are DIFFERENT : FAILED : " $dorv |
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74 | # |
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75 | # Offer view of differences on the second pass |
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76 | # |
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77 | if [ $pass == 1 ]; then |
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78 | echo "<return> to view restart_ice.nc differences" |
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79 | read y |
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80 | cdo -diffv $f1o $f2o |
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81 | done_oce=1 |
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82 | #echo "<return> to continue" |
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83 | #read y |
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84 | fi |
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85 | fi |
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86 | fi |
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87 | # |
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88 | fi |
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89 | } |
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90 | |
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91 | function resttest() { |
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92 | # |
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93 | # Restartability checks. Expects LONG and SHORT run directories |
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94 | # Compares end of LONG stat files with equivalent entries from the SHORT stat files. |
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95 | # |
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96 | vdir=$1 |
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97 | nam=$2 |
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98 | pass=$3 |
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99 | # |
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100 | if [ -d $vdir/$nam ]; then |
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101 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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102 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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103 | f1o=$vdir/$nam/$mach/$dorv/LONG/ocean.output |
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104 | f1s=$vdir/$nam/$mach/$dorv/LONG/solver.stat |
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105 | f1t=$vdir/$nam/$mach/$dorv/LONG/tracer.stat |
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106 | f2o=$vdir/$nam/$mach/$dorv/SHORT/ocean.output |
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107 | f2s=$vdir/$nam/$mach/$dorv/SHORT/solver.stat |
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108 | f2t=$vdir/$nam/$mach/$dorv/SHORT/tracer.stat |
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109 | |
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110 | if [ ! -f $f1s ] && [ ! -f $f1t ] ; then |
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111 | printf "%-20s %s\n" $nam " incomplete test"; |
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112 | return; |
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113 | fi |
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114 | if [ ! -f $f2s ] && [ ! -f $f2t ] ; then |
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115 | printf "%-20s %s\n" $nam " incomplete test"; |
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116 | return; |
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117 | fi |
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118 | # |
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119 | done_oce=0 |
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120 | |
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121 | if [ -f $f1s ] && [ -f $f2s ]; then |
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122 | nl=(`wc -l $f2s`) |
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123 | tail -${nl[0]} $f1s > f1.tmp$$ |
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124 | cmp -s f1.tmp$$ $f2s |
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125 | if [ $? == 0 ]; then |
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126 | if [ $pass == 0 ]; then |
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127 | printf "%-20s %s %s\n" $nam " solver.stat restartability passed : " $dorv |
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128 | fi |
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129 | else |
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130 | printf "%-20s %s %s\n" $nam " solver.stat restartability FAILED : " $dorv |
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131 | # |
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132 | # Offer view of differences on the second pass |
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133 | # |
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134 | if [ $pass == 1 ]; then |
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135 | echo "<return> to view solver.stat differences" |
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136 | read y |
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137 | sdiff f1.tmp$$ $f2s |
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138 | echo "<return> to view ocean.output differences" |
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139 | read y |
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140 | sdiff $f1o $f2o | grep "|" |
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141 | done_oce=1 |
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142 | echo "<return> to continue" |
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143 | read y |
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144 | fi |
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145 | fi |
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146 | fi |
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147 | # |
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148 | # Check tracer.stat files (if they exist) |
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149 | # |
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150 | if [ -f $f1t ] && [ -f $f2t ]; then |
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151 | nl=(`wc -l $f2t`) |
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152 | tail -${nl[0]} $f1t > f1.tmp$$ |
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153 | cmp -s f1.tmp$$ $f2t |
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154 | if [ $? == 0 ]; then |
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155 | if [ $pass == 0 ]; then |
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156 | printf "%-20s %s %s\n" $nam " tracer.stat restartability passed : " $dorv |
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157 | fi |
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158 | else |
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159 | printf "%-20s %s %s\n" $nam " tracer.stat restartability FAILED : " $dorv |
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160 | # |
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161 | # Offer view of differences on the second pass |
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162 | # |
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163 | if [ $pass == 1 ]; then |
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164 | echo "<return> to view tracer.stat differences" |
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165 | read y |
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166 | sdiff f1.tmp$$ $f2t |
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167 | # |
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168 | # Only offer ocean.output view if it has not been viewed previously |
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169 | # |
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170 | if [ $done_oce == 0 ]; then |
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171 | echo "<return> to view ocean.output differences" |
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172 | read y |
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173 | sdiff $f1o $f2o | grep "|" |
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174 | fi |
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175 | echo "<return> to continue" |
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176 | read y |
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177 | fi |
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178 | fi |
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179 | fi |
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180 | rm f1.tmp$$ |
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181 | fi |
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182 | } |
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183 | function reprotest(){ |
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184 | # |
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185 | # Reproducibility checks. Expects REPRO_N_M and REPRO_I_J run directories |
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186 | # Compares end of stat files from each |
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187 | # |
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188 | vdir=$1 |
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189 | nam=$2 |
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190 | pass=$3 |
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191 | # |
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192 | if [ -d $vdir/$nam ]; then |
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193 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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194 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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195 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -2l | head -1 ` |
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196 | rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -1l` |
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197 | f1o=$vdir/$nam/$mach/$dorv/$rep1/ocean.output |
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198 | f1s=$vdir/$nam/$mach/$dorv/$rep1/solver.stat |
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199 | f1t=$vdir/$nam/$mach/$dorv/$rep1/tracer.stat |
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200 | f2o=$vdir/$nam/$mach/$dorv/$rep2/ocean.output |
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201 | f2s=$vdir/$nam/$mach/$dorv/$rep2/solver.stat |
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202 | f2t=$vdir/$nam/$mach/$dorv/$rep2/tracer.stat |
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203 | |
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204 | if [ ! -f $f1s ] && [ ! -f $f1t ] ; then |
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205 | printf "%-20s %s\n" $nam " incomplete test"; |
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206 | return; |
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207 | fi |
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208 | if [ ! -f $f2s ] && [ ! -f $f2t ] ; then |
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209 | printf "%-20s %s\n" $nam " incomplete test"; |
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210 | return; |
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211 | fi |
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212 | # |
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213 | done_oce=0 |
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214 | |
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215 | if [ -f $f1s ] && [ -f $f2s ] ; then |
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216 | cmp -s $f1s $f2s |
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217 | if [ $? == 0 ]; then |
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218 | if [ $pass == 0 ]; then |
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219 | printf "%-20s %s %s\n" $nam " solver.stat reproducibility passed : " $dorv |
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220 | fi |
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221 | else |
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222 | printf "%-20s %s %s\n" $nam " solver.stat reproducibility FAILED : " $dorv |
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223 | # |
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224 | # Offer view of differences on the second pass |
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225 | # |
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226 | if [ $pass == 1 ]; then |
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227 | echo "<return> to view solver.stat differences" |
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228 | read y |
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229 | sdiff f1.tmp$$ $f2s |
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230 | echo "<return> to view ocean.output differences" |
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231 | read y |
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232 | sdiff $f1o $f2o | grep "|" |
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233 | done_oce=1 |
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234 | echo "<return> to continue" |
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235 | read y |
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236 | fi |
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237 | fi |
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238 | fi |
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239 | # |
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240 | # Check tracer.stat files (if they exist) |
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241 | # |
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242 | if [ -f $f1t ] && [ -f $f2t ] ; then |
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243 | cmp -s $f1t $f2t |
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244 | if [ $? == 0 ]; then |
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245 | if [ $pass == 0 ]; then printf "%-20s %s %s\n" $nam " tracer.stat reproducibility passed : " $dorv |
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246 | fi |
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247 | else |
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248 | printf "%-20s %s %s\n" $nam " tracer.stat reproducibility FAILED : " $dorv |
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249 | # |
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250 | # Offer view of differences on the second pass |
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251 | # |
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252 | if [ $pass == 1 ]; then |
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253 | echo "<return> to view tracer.stat differences" |
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254 | read y |
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255 | sdiff $f1t $f2t |
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256 | # |
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257 | # Only offer ocean.output view if it has not been viewed previously |
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258 | # |
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259 | if [ $done_oce == 0 ]; then |
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260 | echo "<return> to view ocean.output differences" |
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261 | read y |
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262 | sdiff $f1o $f2o | grep "|" |
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263 | fi |
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264 | echo "<return> to continue" |
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265 | read y |
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266 | fi |
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267 | fi |
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268 | fi |
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269 | fi |
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270 | } |
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271 | |
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272 | function identictest(){ |
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273 | # |
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274 | # checks AGRIF does not corrupe results with no AGRIF zoom. Expects ORCA2AGUL/AGRIFNOZ and ORCA2AGUL_NAGR/AGRIFNO run directories |
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275 | # Compares solver.stat files for each |
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276 | # |
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277 | vdir=$1 |
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278 | dir1=$2 |
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279 | dir2=$3 |
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280 | pass=$4 |
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281 | # |
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282 | if [ -d $vdir/$dir1 ] && [ -d $vdir/$dir2 ]; then |
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283 | dorv1=`ls -1rt $vdir/$dir1/$mach/ | tail -1l ` |
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284 | dorv1=`echo $dorv1 | sed -e 's:.*/::'` |
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285 | dorv2=`ls -1rt $vdir/$dir2/$mach/ | tail -1l ` |
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286 | dorv2=`echo $dorv2 | sed -e 's:.*/::'` |
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287 | |
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288 | rep1=`ls -1rt $vdir/$dir1/$mach/$dorv1/ | tail -2l | head -1 ` |
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289 | rep2=`ls -1rt $vdir/$dir2/$mach/$dorv2/ | tail -1l` |
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290 | f1s=$vdir/$dir1/$mach/$dorv1/$rep1/solver.stat |
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291 | f2s=$vdir/$dir2/$mach/$dorv2/$rep2/solver.stat |
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292 | |
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293 | if [ ! -f $f1s ] && [ ! -f $f2s ] ; then |
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294 | printf "%-20s %s\n" $dir1 $dir2 " incomplete test"; |
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295 | return; |
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296 | fi |
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297 | # |
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298 | done_oce=0 |
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299 | |
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300 | if [ -f $f1s ] && [ -f $f2s ] ; then |
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301 | cmp -s $f1s $f2s |
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302 | if [ $? == 0 ]; then |
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303 | if [ $pass == 0 ]; then |
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304 | printf "%-20s %s %s %s %s\n" $rep1 $rep2 " AGRIF: solver.stat unchanged - test passed : " $dorv1 $dorv2 |
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305 | fi |
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306 | else |
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307 | printf "%-20s %s %s %s %s\n" $rep1 $rep2 " for AGRIF, solver.stat test FAILED : " $dorv1 $dorv2 |
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308 | # |
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309 | # Offer view of differences on the second pass |
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310 | # |
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311 | if [ $pass == 1 ]; then |
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312 | echo "<return> to view solver.stat differences" |
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313 | read y |
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314 | sdiff $f1s $f2s |
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315 | done_oce=1 |
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316 | echo "<return> to continue" |
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317 | read y |
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318 | fi |
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319 | fi |
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320 | fi |
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321 | else |
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322 | printf "%-20s %s\n" $dir1 $dir2 " incomplete test"; |
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323 | fi |
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324 | } |
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325 | ########################### END of function definitions ################################# |
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326 | ## ## |
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327 | ## Main script ## |
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328 | ## ## |
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329 | ######################################################################################### |
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330 | # |
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331 | mach=`grep "COMPILER=" ./sette.sh | sed -e 's/COMPILER=//'` |
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332 | NEMO_VALID=`grep "NEMO_VALIDATION_DIR=" ./param.cfg | sed -e 's/NEMO_VALIDATION_DIR=//'` |
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333 | # Directory to run the tests |
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334 | SETTE_DIR=$(cd $(dirname "$0"); pwd) |
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335 | MAIN_DIR=$(dirname $SETTE_DIR) |
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336 | CONFIG_DIR0=${MAIN_DIR}/CONFIG |
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337 | TOOLS_DIR=${MAIN_DIR}/TOOLS |
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338 | COMPIL_DIR=${TOOLS_DIR}/COMPILE |
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339 | NPROC=32 |
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340 | |
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341 | SAS_RESTART_DIR=${CONFIG_DIR0}/SAS_ST |
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342 | # |
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343 | if [ ! -d $NEMO_VALID ]; then |
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344 | echo "$NEMO_VALID validation directory not found" |
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345 | exit |
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346 | fi |
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347 | # |
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348 | |
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349 | # The script also needs the date or revision tag. Currently this is taken from the latest sub-directory found in each directory |
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350 | # |
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351 | for pass in 0 1 |
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352 | do |
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353 | # |
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354 | if [ $pass == 1 ]; then echo "---------------2nd pass------------------";fi |
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355 | # |
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356 | |
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357 | # Rebuild and restartability test for SAS |
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358 | # |
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359 | for restart_file in WSAS_ST |
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360 | do |
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361 | restfile $NEMO_VALID $restart_file $pass |
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362 | done |
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363 | # |
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364 | # Restartability test |
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365 | # |
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366 | for restart_test in WGYREPIS_ST WORCA2LIM3PIS_ST WORCA2OFFPIS_ST WAMM12_ST WISOMIP_ST WORCA2AGR_ST |
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367 | do |
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368 | resttest $NEMO_VALID $restart_test $pass |
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369 | done |
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370 | # |
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371 | # Reproducibility tests |
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372 | # |
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373 | for repro_test in WGYREPIS_ST WORCA2LIM3PIS_ST WORCA2OFFPIS_ST WAMM12_ST WISOMIP_ST WORCA2_LIM3_OBS_ST WORCA2AGR_ST |
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374 | do |
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375 | reprotest $NEMO_VALID $repro_test $pass |
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376 | done |
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377 | |
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378 | |
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379 | |
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380 | # AGRIF special check |
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381 | dir1=WORCA2AGUL_NOZOOM_ST |
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382 | dir2=WORCA2AGUL_NOAGR_ST |
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383 | identictest $NEMO_VALID $dir1 $dir2 $pass |
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384 | |
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385 | |
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386 | done |
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387 | # |
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388 | ## Additional checks for ORCA2AGUL/FIRST standalone AGRIF test |
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389 | ## still to be added |
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390 | |
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391 | |
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392 | |
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393 | exit |
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