1 | #!/bin/bash -f |
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2 | # set -vx |
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3 | # simple SETTE report generator. |
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4 | # |
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5 | # This version should be run in the SETTE directory. |
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6 | # The machine name will be picked up from the sette.sh script but the location of the |
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7 | # validation directory needs to be set here (currently assumed to reside in the ../cfgs directory) |
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8 | # |
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9 | ######################################################################################### |
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10 | ######################### Start of function definitions ################################# |
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11 | ## |
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12 | |
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13 | function restfile() { |
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14 | # Rebuild ice restart for SAS CONFIG, and restartability checks. Expects LONG and SHORT run directories. |
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15 | # For Stand Alone Surface configuration ocean is not running, just run ice model; so no outputs ocean files. |
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16 | # Compares LONG rebuild restart ice file with equivalent entry from the SHORT rebuild restart ice file. |
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17 | # |
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18 | # check nco module loaded, and load it if not |
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19 | if [ ! $( echo $LOADEDMODULES | grep cdo ) ]; then module load cdo >& /dev/null ; fi |
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20 | # |
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21 | vdir=$1 |
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22 | nam=$2 |
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23 | pass=$3 |
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24 | |
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25 | # |
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26 | if [ -d $vdir/$nam ]; then |
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27 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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28 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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29 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -2l | head -1 ` |
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30 | rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -1l` |
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31 | cd ${SAS_RESTART_DIR}/LONG |
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32 | #SF add here compilation of rebuild_tools to rebuild restart files, and add comparison of restart files |
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33 | cd ${TOOLS_DIR} |
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34 | ./maketools -n REBUILD_NEMO -m ${mach} > /dev/null 2>&1 |
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35 | cd ${TOOLS_DIR}/REBUILD_NEMO |
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36 | #SF echo "REBUILD LONG restart SAS files, without standard output" |
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37 | ./rebuild_nemo -t 4 ../../cfgs/SAS_ST/LONG/SAS_00000240_restart_ice $NPROC > /dev/null 2>&1 |
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38 | #SF echo "REBUILD SHORT restart SAS files, without standard output" |
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39 | ./rebuild_nemo -t 4 ../../cfgs/SAS_ST/SHORT/SAS_00000240_restart_ice $NPROC >&- |
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40 | cd ${SAS_RESTART_DIR}/LONG |
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41 | #SF echo "COPY rebuild restart files" |
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42 | cp SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/LONG/. |
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43 | cp ../SHORT/SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/SHORT/. |
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44 | |
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45 | f1o=$vdir/$nam/$mach/$dorv/LONG/SAS_00000240_restart_ice.nc |
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46 | f2o=$vdir/$nam/$mach/$dorv/SHORT/SAS_00000240_restart_ice.nc |
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47 | if [ ! -f $f1o ] && [ ! -f $f2o ] ; then |
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48 | printf "%-20s %s\n" $nam " REBUILD SAS restart ice DOES NOT exists; incomplete test"; |
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49 | return; |
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50 | fi |
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51 | # |
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52 | done_oce=0 |
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53 | # |
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54 | if [ -f $f1o ] && [ -f $f2o ]; then |
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55 | ## Compare the two netcdf files |
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56 | cdo diffn $f1o $f2o > cdo_diff.out 2> /dev/null |
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57 | ## Identical if cdo_diff.out exists but has zero size |
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58 | if [ ! -s cdo_diff.out ]; then |
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59 | difi=0 |
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60 | else |
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61 | ## Identical if first character of $dif ==0 |
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62 | dif=$( grep -om1 '[0-9]* of [0-9]* records differ' cdo_diff.out ) |
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63 | # difi contains the first character of summary of cdo dif. if = 0, then 0 record differ between the 2 files |
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64 | if [ -n "$dif" ]; then |
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65 | difi=`echo $dif | cut -c -1` |
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66 | fi |
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67 | fi |
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68 | \rm cdo_diff.out |
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69 | |
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70 | if [ $difi == 0 ]; then |
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71 | if [ $pass == 0 ]; then |
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72 | printf "%-20s %s %s\n" $nam " ice restarts are IDENTICAL passed : " $dorv |
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73 | fi |
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74 | else |
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75 | printf "%-20s %s %s\n" $nam " ice restarts are DIFFERENT FAILED : " $dorv |
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76 | # |
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77 | # Offer view of differences on the second pass |
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78 | # |
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79 | if [ $pass == 1 ]; then |
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80 | echo "<return> to view restart_ice.nc differences" |
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81 | read y |
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82 | cdo -diffv $f1o $f2o |
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83 | done_oce=1 |
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84 | #echo "<return> to continue" |
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85 | #read y |
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86 | fi |
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87 | fi |
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88 | else |
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89 | printf "%-20s %s\n" $nam " incomplete test"; |
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90 | return; |
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91 | fi |
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92 | # |
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93 | fi |
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94 | } |
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95 | |
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96 | function resttest() { |
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97 | # |
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98 | # Restartability checks. Expects LONG and SHORT run directories |
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99 | # Compares end of LONG stat files with equivalent entries from the SHORT stat files. |
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100 | # |
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101 | vdir=$1 |
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102 | nam=$2 |
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103 | pass=$3 |
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104 | # |
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105 | if [ -d $vdir/$nam ]; then |
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106 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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107 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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108 | f1o=$vdir/$nam/$mach/$dorv/LONG/ocean.output |
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109 | f1s=$vdir/$nam/$mach/$dorv/LONG/run.stat |
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110 | f1t=$vdir/$nam/$mach/$dorv/LONG/tracer.stat |
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111 | f2o=$vdir/$nam/$mach/$dorv/SHORT/ocean.output |
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112 | f2s=$vdir/$nam/$mach/$dorv/SHORT/run.stat |
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113 | f2t=$vdir/$nam/$mach/$dorv/SHORT/tracer.stat |
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114 | |
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115 | if [ ! -f $f1s ] && [ ! -f $f1t ] ; then |
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116 | printf "%-20s %s\n" $nam " incomplete test"; |
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117 | return; |
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118 | fi |
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119 | if [ ! -f $f2s ] && [ ! -f $f2t ] ; then |
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120 | printf "%-20s %s\n" $nam " incomplete test"; |
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121 | return; |
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122 | fi |
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123 | # |
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124 | done_oce=0 |
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125 | |
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126 | if [ -f $f1s ] && [ -f $f2s ]; then |
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127 | nl=(`wc -l $f2s`) |
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128 | tail -${nl[0]} $f1s > f1.tmp$$ |
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129 | cmp -s f1.tmp$$ $f2s |
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130 | if [ $? == 0 ]; then |
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131 | if [ $pass == 0 ]; then |
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132 | printf "%-20s %s %s\n" $nam " run.stat restartability passed : " $dorv |
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133 | fi |
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134 | else |
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135 | printf "%-20s %s %s\n" $nam " run.stat restartability FAILED : " $dorv |
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136 | # |
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137 | # Offer view of differences on the second pass |
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138 | # |
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139 | if [ $pass == 1 ]; then |
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140 | echo "<return> to view run.stat differences" |
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141 | read y |
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142 | sdiff f1.tmp$$ $f2s |
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143 | echo "<return> to view ocean.output differences" |
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144 | read y |
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145 | sdiff $f1o $f2o | grep "|" |
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146 | done_oce=1 |
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147 | echo "<return> to continue" |
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148 | read y |
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149 | fi |
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150 | fi |
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151 | fi |
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152 | # |
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153 | # Check tracer.stat files (if they exist) |
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154 | # |
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155 | if [ -f $f1t ] && [ -f $f2t ]; then |
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156 | nl=(`wc -l $f2t`) |
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157 | tail -${nl[0]} $f1t > f1.tmp$$ |
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158 | cmp -s f1.tmp$$ $f2t |
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159 | if [ $? == 0 ]; then |
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160 | if [ $pass == 0 ]; then |
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161 | printf "%-20s %s %s\n" $nam " tracer.stat restartability passed : " $dorv |
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162 | fi |
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163 | else |
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164 | printf "%-20s %s %s\n" $nam " tracer.stat restartability FAILED : " $dorv |
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165 | # |
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166 | # Offer view of differences on the second pass |
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167 | # |
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168 | if [ $pass == 1 ]; then |
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169 | echo "<return> to view tracer.stat differences" |
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170 | read y |
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171 | sdiff f1.tmp$$ $f2t |
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172 | # |
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173 | # Only offer ocean.output view if it has not been viewed previously |
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174 | # |
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175 | if [ $done_oce == 0 ]; then |
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176 | echo "<return> to view ocean.output differences" |
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177 | read y |
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178 | sdiff $f1o $f2o | grep "|" |
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179 | fi |
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180 | echo "<return> to continue" |
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181 | read y |
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182 | fi |
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183 | fi |
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184 | fi |
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185 | rm f1.tmp$$ |
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186 | fi |
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187 | } |
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188 | |
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189 | function reprotest(){ |
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190 | # |
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191 | # Reproducibility checks. Expects REPRO_N_M and REPRO_I_J run directories |
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192 | # Compares end of stat files from each |
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193 | # |
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194 | vdir=$1 |
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195 | nam=$2 |
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196 | pass=$3 |
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197 | # |
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198 | if [ -d $vdir/$nam ]; then |
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199 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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200 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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201 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -2l | head -1 ` |
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202 | rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -1l` |
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203 | f1o=$vdir/$nam/$mach/$dorv/$rep1/ocean.output |
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204 | f1s=$vdir/$nam/$mach/$dorv/$rep1/run.stat |
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205 | f1t=$vdir/$nam/$mach/$dorv/$rep1/tracer.stat |
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206 | f2o=$vdir/$nam/$mach/$dorv/$rep2/ocean.output |
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207 | f2s=$vdir/$nam/$mach/$dorv/$rep2/run.stat |
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208 | f2t=$vdir/$nam/$mach/$dorv/$rep2/tracer.stat |
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209 | |
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210 | if [ ! -f $f1s ] && [ ! -f $f1t ] ; then |
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211 | printf "%-20s %s\n" $nam " incomplete test"; |
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212 | return; |
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213 | fi |
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214 | if [ ! -f $f2s ] && [ ! -f $f2t ] ; then |
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215 | printf "%-20s %s\n" $nam " incomplete test"; |
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216 | return; |
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217 | fi |
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218 | # |
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219 | done_oce=0 |
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220 | |
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221 | if [ -f $f1s ] && [ -f $f2s ] ; then |
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222 | cmp -s $f1s $f2s |
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223 | if [ $? == 0 ]; then |
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224 | if [ $pass == 0 ]; then |
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225 | printf "%-20s %s %s\n" $nam " run.stat reproducibility passed : " $dorv |
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226 | fi |
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227 | else |
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228 | printf "%-20s %s %s\n" $nam " run.stat reproducibility FAILED : " $dorv |
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229 | # |
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230 | # Offer view of differences on the second pass |
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231 | # |
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232 | if [ $pass == 1 ]; then |
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233 | echo "<return> to view run.stat differences" |
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234 | read y |
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235 | sdiff f1.tmp$$ $f2s |
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236 | echo "<return> to view ocean.output differences" |
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237 | read y |
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238 | sdiff $f1o $f2o | grep "|" |
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239 | done_oce=1 |
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240 | echo "<return> to continue" |
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241 | read y |
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242 | fi |
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243 | fi |
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244 | fi |
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245 | # |
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246 | # Check tracer.stat files (if they exist) |
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247 | # |
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248 | if [ -f $f1t ] && [ -f $f2t ] ; then |
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249 | cmp -s $f1t $f2t |
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250 | if [ $? == 0 ]; then |
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251 | if [ $pass == 0 ]; then printf "%-20s %s %s\n" $nam " tracer.stat reproducibility passed : " $dorv |
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252 | fi |
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253 | else |
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254 | printf "%-20s %s %s\n" $nam " tracer.stat reproducibility FAILED : " $dorv |
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255 | # |
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256 | # Offer view of differences on the second pass |
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257 | # |
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258 | if [ $pass == 1 ]; then |
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259 | echo "<return> to view tracer.stat differences" |
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260 | read y |
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261 | sdiff $f1t $f2t |
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262 | # |
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263 | # Only offer ocean.output view if it has not been viewed previously |
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264 | # |
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265 | if [ $done_oce == 0 ]; then |
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266 | echo "<return> to view ocean.output differences" |
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267 | read y |
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268 | sdiff $f1o $f2o | grep "|" |
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269 | fi |
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270 | echo "<return> to continue" |
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271 | read y |
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272 | fi |
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273 | fi |
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274 | fi |
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275 | fi |
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276 | } |
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277 | function runcmpres(){ |
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278 | # |
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279 | # compare *.stat file with reference file from a previous sette test or previous version |
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280 | # store in NEMO_VALID_REF at revision NEMO_REV_REF |
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281 | # Compares end of stat files from each |
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282 | # |
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283 | vdir=$1 |
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284 | nam=$2 |
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285 | vdirref=$3 |
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286 | dorvref=$4 |
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287 | pass=$5 |
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288 | # |
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289 | if [ -d $vdir/$nam ]; then |
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290 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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291 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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292 | f1s=$vdir/$nam/$mach/$dorv/LONG/run.stat |
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293 | f1t=$vdir/$nam/$mach/$dorv/LONG/tracer.stat |
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294 | f2s=$vdirref/$nam/$mach/$dorvref/LONG/run.stat |
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295 | f2t=$vdirref/$nam/$mach/$dorvref/LONG/tracer.stat |
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296 | if [ ! -f $f1s ] && [ ! -f $f1t ] ; then |
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297 | printf "%-20s %s\n" $nam " incomplete test"; |
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298 | return; |
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299 | fi |
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300 | if [ ! -f $f2s ] && [ ! -f $f2t ] ; then |
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301 | printf "%-20s %s\n" $nam " incomplete test"; |
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302 | return; |
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303 | fi |
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304 | # |
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305 | done_oce=0 |
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306 | |
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307 | if [ -f $f1s ] && [ -f $f2s ] ; then |
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308 | cmp -s $f1s $f2s |
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309 | if [ $? == 0 ]; then |
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310 | if [ $pass == 0 ]; then |
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311 | printf "%-20s %s %s\n" $nam " run.stat before/after are similar " |
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312 | fi |
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313 | else |
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314 | printf "%-20s %s %s\n" $nam " run.stat before/after are DIFFERENT " |
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315 | # |
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316 | # Offer view of differences on the second pass |
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317 | # |
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318 | if [ $pass == 1 ]; then |
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319 | echo "<return> to view run.stat differences" |
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320 | read y |
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321 | sdiff f1.tmp$$ $f2s |
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322 | done_oce=1 |
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323 | echo "<return> to continue" |
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324 | read y |
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325 | fi |
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326 | fi |
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327 | fi |
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328 | # Check tracer.stat files (if they exist) |
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329 | # |
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330 | if [ -f $f1t ] && [ -f $f2t ] ; then |
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331 | cmp -s $f1t $f2t |
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332 | if [ $? == 0 ]; then |
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333 | if [ $pass == 0 ]; then |
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334 | printf "%-20s %s %s\n" $nam " tracer.stat before/after are similar " |
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335 | fi |
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336 | else |
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337 | printf "%-20s %s %s\n" $nam " tracer.stat before/after are DIFFERENT " |
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338 | # |
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339 | # Offer view of differences on the second pass |
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340 | # |
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341 | if [ $pass == 1 ]; then |
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342 | echo "<return> to view tracer.stat differences" |
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343 | read y |
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344 | sdiff $f1t $f2t |
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345 | fi |
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346 | fi |
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347 | fi |
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348 | fi |
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349 | } |
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350 | |
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351 | function runtest(){ |
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352 | # |
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353 | # Run checks. |
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354 | # Check presence of E R R O R in ocean.output from each |
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355 | # |
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356 | vdir=$1 |
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357 | nam=$2 |
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358 | pass=$3 |
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359 | # |
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360 | if [ -d $vdir/$nam ]; then |
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361 | dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l ` |
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362 | dorv=`echo $dorv | sed -e 's:.*/::'` |
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363 | rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -2l | head -1 ` |
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364 | f1o=$vdir/$nam/$mach/$dorv/$rep1/ocean.output |
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365 | if [ ! -f $f1o ] ; then |
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366 | printf "%-20s %s\n" $nam " ocean.output is MISSING : " $dorv |
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367 | return; |
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368 | else |
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369 | nerr=`grep 'E R R O R' $f1o | wc -l` |
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370 | if [[ $nerr > 0 ]]; then |
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371 | printf "%-20s %s %s\n" $nam " run FAILED : " $dorv |
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372 | if [ $pass == 1 ]; then |
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373 | echo "<return> to view end of ocean.output" |
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374 | read y |
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375 | tail -100 $f1o |
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376 | echo '' |
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377 | echo "full ocean.output available here: $f1o" |
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378 | fi |
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379 | fi |
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380 | fi |
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381 | else |
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382 | printf "%-20s %s %s\n" $nam " directory is MISSING : " $dorv |
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383 | fi |
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384 | } |
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385 | |
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386 | function identictest(){ |
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387 | # |
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388 | # checks AGRIF does not corrupe results with no AGRIF zoom. Expects ORCA2AGUL/AGRIFNOZ and ORCA2AGUL_NAGR/AGRIFNO run directories |
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389 | # Compares solver.stat files for each |
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390 | # |
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391 | vdir=$1 |
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392 | dir1=$2 |
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393 | dir2=$3 |
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394 | pass=$4 |
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395 | # |
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396 | if [ -d $vdir/$dir1 ] && [ -d $vdir/$dir2 ]; then |
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397 | dorv1=`ls -1rt $vdir/$dir1/$mach/ | tail -1l ` |
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398 | dorv1=`echo $dorv1 | sed -e 's:.*/::'` |
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399 | dorv2=`ls -1rt $vdir/$dir2/$mach/ | tail -1l ` |
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400 | dorv2=`echo $dorv2 | sed -e 's:.*/::'` |
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401 | |
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402 | rep1=`ls -1rt $vdir/$dir1/$mach/$dorv1/ | tail -2l | head -1 ` |
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403 | rep2=`ls -1rt $vdir/$dir2/$mach/$dorv2/ | tail -1l` |
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404 | f1s=$vdir/$dir1/$mach/$dorv1/$rep1/run.stat |
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405 | f2s=$vdir/$dir2/$mach/$dorv2/$rep2/run.stat |
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406 | |
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407 | if [ ! -f $f1s ] && [ ! -f $f2s ] ; then |
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408 | printf "%-20s %s\n" $dir1 $dir2 " incomplete test"; |
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409 | return; |
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410 | fi |
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411 | # |
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412 | done_oce=0 |
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413 | |
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414 | if [ -f $f1s ] && [ -f $f2s ] ; then |
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415 | cmp -s $f1s $f2s |
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416 | if [ $? == 0 ]; then |
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417 | if [ $pass == 0 ]; then |
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418 | printf "%-20s %s %s %s %s\n" $rep1 $rep2 " AGRIF: run.stat unchanged - test passed : " $dorv1 $dorv2 |
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419 | fi |
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420 | else |
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421 | printf "%-20s %s %s %s %s\n" $rep1 $rep2 " for AGRIF, run.stat test FAILED : " $dorv1 $dorv2 |
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422 | # |
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423 | # Offer view of differences on the second pass |
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424 | # |
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425 | if [ $pass == 1 ]; then |
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426 | echo "<return> to view run.stat differences" |
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427 | read y |
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428 | sdiff $f1s $f2s |
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429 | done_oce=1 |
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430 | echo "<return> to continue" |
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431 | read y |
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432 | fi |
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433 | fi |
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434 | fi |
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435 | else |
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436 | printf "%-20s %s\n" $dir1 $dir2 " incomplete test"; |
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437 | fi |
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438 | } |
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439 | ########################### END of function definitions ################################# |
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440 | ## ## |
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441 | ## Main script ## |
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442 | ## ## |
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443 | ######################################################################################### |
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444 | # |
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445 | mach=`grep "COMPILER=" ./sette.sh | sed -e 's/COMPILER=//'` |
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446 | NEMO_VALID=`grep "NEMO_VALIDATION_DIR=" ./param.cfg | sed -e 's/NEMO_VALIDATION_DIR=//'` |
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447 | NEMO_VALID=`eval "echo $NEMO_VALID"` |
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448 | # |
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449 | if [ ! -d $NEMO_VALID ]; then |
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450 | echo "$NEMO_VALID validation directory not found" |
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451 | exit |
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452 | fi |
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453 | # |
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454 | # Directory to run the tests |
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455 | NEMO_VALID_REF=/path/to/reference/sette/results |
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456 | NEMO_REV_REF=0000 |
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457 | SETTE_DIR=$(cd $(dirname "$0"); pwd) |
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458 | MAIN_DIR=$(dirname $SETTE_DIR) |
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459 | CONFIG_DIR0=${MAIN_DIR}/cfgs |
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460 | TOOLS_DIR=${MAIN_DIR}/tools |
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461 | NPROC=32 |
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462 | SAS_RESTART_DIR=${CONFIG_DIR0}/SAS_ST |
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463 | # |
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464 | # Show current revision tag and branch name |
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465 | # |
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466 | cmd="svn" |
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467 | [ ! -d "$SETTE_DIR/.svn" ] && cmd="git $cmd" |
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468 | # define revision as in all_function |
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469 | revision=`$cmd info ../ | grep -i "Last Changed Rev:" | sed -e "s/ //g" | cut -d ":" -f 2` |
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470 | branchname=`$cmd info | grep URL | rev | cut -d "/" -f 3 | rev` |
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471 | echo "SETTE validation report : $branchname @ r$revision" |
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472 | # |
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473 | # The script also needs the date or revision tag. Currently this is taken from the latest sub-directory found in each directory |
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474 | # |
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475 | for pass in 0 1 |
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476 | do |
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477 | # |
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478 | if [ $pass == 1 ]; then echo "---------------2nd pass------------------";fi |
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479 | # |
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480 | |
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481 | # Rebuild and restartability test for SAS |
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482 | # |
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483 | for restart_file in WSAS_ST |
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484 | do |
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485 | restfile $NEMO_VALID $restart_file $pass |
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486 | done |
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487 | # |
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488 | # Restartability test |
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489 | # |
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490 | for restart_test in WGYREPIS_ST WORCA2SI3PIS_ST WORCA2OFFPIS_ST WAMM12_ST WISOMIP_ST WORCA2AGR_ST |
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491 | do |
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492 | resttest $NEMO_VALID $restart_test $pass |
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493 | done |
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494 | # |
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495 | # Reproducibility tests |
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496 | # |
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497 | for repro_test in WGYREPIS_ST WORCA2SI3PIS_ST WORCA2OFFPIS_ST WAMM12_ST WISOMIP_ST WORCA2_SI3_OBS_ST WORCA2AGR_ST |
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498 | do |
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499 | reprotest $NEMO_VALID $repro_test $pass |
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500 | runtest $NEMO_VALID $repro_test $pass |
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501 | done |
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502 | # |
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503 | # AGRIF special check |
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504 | # |
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505 | dir1=WORCA2AGUL_NOZOOM_ST |
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506 | dir2=WORCA2AGUL_NOAGR_ST |
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507 | identictest $NEMO_VALID $dir1 $dir2 $pass |
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508 | # |
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509 | # before/after tests |
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510 | # |
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511 | if [ $NEMO_VALID_REF != "/path/to/reference/sette/results" ]; then |
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512 | echo '' |
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513 | echo 'check result differences between :' |
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514 | echo "$NEMO_VALID at rev $revision" |
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515 | echo 'and' |
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516 | echo "$NEMO_VALID_REF at rev $NEMO_REV_REF" |
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517 | for repro_test in WGYREPIS_ST WORCA2SI3PIS_ST WORCA2OFFPIS_ST WAMM12_ST WISOMIP_ST WORCA2_SI3_OBS_ST WORCA2AGR_ST |
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518 | do |
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519 | runcmpres $NEMO_VALID $repro_test $NEMO_VALID_REF $NEMO_REV_REF $pass |
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520 | done |
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521 | else |
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522 | echo '' |
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523 | echo 'Result are not compare with any other revision. To do it please fill NEMO_VALID_REF and NEMO_REV_REF in sette_rpt.sh' |
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524 | echo '' |
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525 | fi |
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526 | |
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527 | done |
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528 | # |
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529 | ## Additional checks for ORCA2AGUL/FIRST standalone AGRIF test |
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530 | ## still to be added |
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531 | |
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532 | exit |
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