source: utils/CI/sette/sette_test-cases.sh @ 9708

Last change on this file since 9708 was 9708, checked in by clem, 3 years ago

debug sette for test cases

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1#!/bin/bash
2############################################################
3# Author : Simona Flavoni for NEMO
4# Contact: sflod@locean-ipsl.upmc.fr
5#
6# sette_test-cases.sh   : principal script of SET TEsts for NEMO (SETTE)
7#                       : this script : compiles, run and tests TEST_CASES
8#
9#                       : TO DO: test if nitend is equal to end of run.stat
10# ----------------------------------------------------------------------
11# NEMO/SETTE , NEMO Consortium (2018)
12# Software governed by the CeCILL licence     (NEMOGCM/NEMO_CeCILL.txt)
13# ----------------------------------------------------------------------
14#
15#
16#############################################################
17#set -vx
18set -o posix
19#set -u
20#set -e
21# ===========
22# DESCRIPTION
23# ===========
24#
25# Variables to be checked by user:
26#
27# COMPILER          : name of compiler as defined in NEMOGCM/ARCH directory
28# BATCH_COMMAND_PAR :  name of the command for submitting parallel batch jobs
29# BATCH_COMMAND_SEQ :  name of the command for submitting sequential batch jobs 
30# INTERACT_FLAG     : flag to run in interactive mode "yes"
31#                           to run in batch mode "no"
32# MPIRUN_FLAG       : flag to run in parallel (MPI) "yes"
33#                           to run in sequential mode (NB_PROC = 1) "no"
34# USING_XIOS        : flag to control the activation of key_iomput
35#                      "yes" to compile using key_iomput and link to the external XIOS library
36#                      "no"  to compile without key_iomput and link to the old IOIPSL library
37# USING_MPMD        : flag to control the use of stand-alone IO servers
38#                     requires USING_XIOS="yes"
39#                      "yes" to run in MPMD (detached) mode with stand-alone IO servers
40#                      "no"  to run in SPMD (attached) mode without separate IO servers
41# NUM_XIOSERVERS    : number of stand-alone IO servers to employ
42#                     set to zero if USING_MPMD="no"
43#
44# Principal script is sette_test-cases.sh, that calls
45#
46#  makenemo  : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
47#              and links to nemo in ${CONFIG_NAME}/EXP00)
48#
49#  param.cfg : sets and loads following directories:
50#
51#   FORCING_DIR         : is the directory for forcing files (tarfile)
52#   INPUT_DIR           : is the directory for input files storing
53#   TMPDIR              : is the temporary directory (if needed)
54#   NEMO_VALIDATION_DIR : is the validation directory
55#
56#   (NOTE: this file is the same for all configrations to be tested with sette_test-cases.sh)
57#
58#   all_functions.sh : loads functions used by sette (note: new functions can be added here)
59#   set_namelist     : function declared in all_functions that sets namelist parameters
60#   post_test_tidyup : creates validation storage directory and copies required output files
61#                      (run.stat and ocean.output) in it after execution of test.
62#
63#  VALIDATION tree is:
64#
65#   NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
66#
67#  prepare_exe_dir.sh : defines and creates directory where the test is executed
68#                       execution directory takes name of TEST_NAME defined for every test
69#                       in sette_test-cases.sh. (each test in executed in its own directory)
70#
71#  prepare_job.sh     : to generate the script run_job.sh
72#
73#  fcm_job.sh         : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
74#                        see sette_test-cases.sh and BATCH_TEMPLATE directory
75#
76#  NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
77#        can be found paths to the input tar file)
78#  NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
79#        directory
80#  NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
81#        remain in ${NEW_CONF}/EXP00
82#
83#  NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
84#        executed commands
85#
86#  NOTE: if sette_test-cases.sh is stopped in output.sette there is written the last command
87#        executed by sette_test-cases.sh
88#
89# example use: ./sette_test-cases.sh
90#########################################################################################
91#
92# Compiler among those in NEMOGCM/ARCH
93COMPILER=X64_ADA_DEBUG
94
95export BATCH_COMMAND_PAR="llsubmit"
96export BATCH_COMMAND_SEQ=$BATCH_COMMAND_PAR
97export INTERACT_FLAG="no"
98export MPIRUN_FLAG="yes"
99export USING_XIOS="yes"
100#
101export DEL_KEYS="key_iomput"
102if [ ${USING_XIOS} == "yes" ] 
103 then
104   export DEL_KEYS=""
105fi
106#
107# Settings which control the use of stand alone servers (only relevant if using xios)
108#
109export USING_MPMD="no"
110export NUM_XIOSERVERS=4
111export JOB_PREFIX=batch-mpmd
112#
113if [ ${USING_MPMD} == "no" ] 
114 then
115   export NUM_XIOSERVERS=0
116   export JOB_PREFIX=batch
117fi
118#
119#
120if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no"]
121 then
122   echo "Incompatible choices. MPMD mode requires the XIOS server"
123   exit
124fi
125
126# Directory to run the tests
127SETTE_DIR=$(cd $(dirname "$0"); pwd)
128MAIN_DIR=$(dirname $SETTE_DIR)
129CONFIG_DIR0=${MAIN_DIR}/cfgs
130TOOLS_DIR=${MAIN_DIR}/tools
131
132CMP_NAM=${1:-$COMPILER}
133# Copy job_batch_COMPILER file for specific compiler into job_batch_template
134cd ${SETTE_DIR}
135cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template || exit
136# Description of configuration tested:
137# OVERFLOW       : 1  TEST s-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs
138#                                        & (dynamics) advection schemes: flux form (ubs, centered), vector form (een)
139#                          zps-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs
140#                                        & (dynamics) advection schemes: flux form (ubs, centered), vector form (een, and een + Hollingsworth correction)
141# LOCK_EXCHANGE  : 2
142# VORTEX         : 3
143# WAD            : 4       
144# SAS_BIPER      : 5
145# ISOMIP         : 6
146
147
148for config in 1 2 3 4 5 6
149do
150
151# ---------
152#  OVERFLOW
153# ---------
154if [ ${config} -eq 1 ] ;  then
155    ## Restartability tests for OVERFLOW
156    export TEST_NAME="LONG"
157    cd ${MAIN_DIR}
158    . ./makenemo -m ${CMP_NAM} -n OVERFLOW_ST -a OVERFLOW -j 8 del_key ${DEL_KEYS}
159    cd ${SETTE_DIR}
160    . ./param.cfg
161    . ./all_functions.sh
162    . ./prepare_exe_dir.sh
163    JOB_FILE=${EXE_DIR}/run_job.sh
164    NPROC=1
165    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
166    cd ${EXE_DIR} 
167    set_namelist namelist_cfg cn_exp \"OVF_LONG\"
168    set_namelist namelist_cfg nn_it000 1
169    set_namelist namelist_cfg nn_itend 120
170    set_namelist namelist_cfg nn_stock 60
171    if [ ${USING_MPMD} == "yes" ] ; then
172       set_xio_using_server iodef.xml true
173    else
174       set_xio_using_server iodef.xml false
175    fi
176    cd ${SETTE_DIR}
177    . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
178
179    cd ${SETTE_DIR}
180    export TEST_NAME="SHORT"
181    . ./prepare_exe_dir.sh
182    cd ${EXE_DIR}
183    set_namelist namelist_cfg cn_exp \"OVF_SHORT\"
184    set_namelist namelist_cfg nn_it000 61
185    set_namelist namelist_cfg nn_itend 120
186    set_namelist namelist_cfg nn_stock 60
187    set_namelist namelist_cfg ln_rstart .true.
188    set_namelist namelist_cfg nn_rstctl 2
189    set_namelist namelist_cfg cn_ocerst_in \"OVF_LONG_00000060_restart\"
190    if [ ${USING_MPMD} == "yes" ] ; then
191       set_xio_using_server iodef.xml true
192    else
193       set_xio_using_server iodef.xml false
194    fi
195    ln -sf ../LONG/OVF_LONG_00000060_restart.nc .
196    if [ ${USING_MPMD} == "yes" ] ; then
197       set_xio_using_server iodef.xml true
198    else
199       set_xio_using_server iodef.xml false
200    fi
201    cd ${SETTE_DIR}
202    . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
203    cd ${SETTE_DIR}
204    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
205
206
207    ## Test for all advection, vert. coordinates, vector form, flux form: test runability and complete all time steps
208    ## Needed namelist-xxxx for every type of run tested
209    cd ${CONFIG_DIR}/${NEW_CONF}/EXP00
210
211    for file in $(echo `ls namelist_*_cfg `) ; do
212        TEST_NAME=`ls $file | sed -e "s/namelist_//" | sed -e "s/_cfg//"`
213        TEST_NAME="EXP-${TEST_NAME}"
214        `mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}`
215        export TEST_NAME="${TEST_NAME}"
216         ##
217        cd ${SETTE_DIR}
218        . ./param.cfg
219        . ./all_functions.sh
220        . ./prepare_exe_dir.sh
221        JOB_FILE=${EXE_DIR}/run_job.sh
222        NPROC=1
223        if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
224        cd ${EXE_DIR}
225        if [ ${USING_MPMD} == "yes" ] ; then
226           set_xio_using_server iodef.xml true
227        else
228           set_xio_using_server iodef.xml false
229        fi
230        cd ${SETTE_DIR}
231        . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
232        cd ${SETTE_DIR}
233        . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
234       ##
235     done
236fi
237
238# --------------
239#  LOCK_EXCHANGE
240# --------------
241if [ ${config} -eq 2 ] ;  then
242    ## Restartability tests for LOCK_EXCHANGE
243    export TEST_NAME="LONG"
244    cd ${MAIN_DIR}
245    . ./makenemo -m ${CMP_NAM} -n LOCK_EXCHANGE_ST -a OVERFLOW -j 8 del_key ${DEL_KEYS}
246    cd ${SETTE_DIR}
247    . ./param.cfg
248    . ./all_functions.sh
249    . ./prepare_exe_dir.sh
250    JOB_FILE=${EXE_DIR}/run_job.sh
251    NPROC=1
252    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
253    cd ${EXE_DIR}
254    set_namelist namelist_cfg cn_exp \"LOCK_LONG\"
255    set_namelist namelist_cfg nn_it000 1
256    set_namelist namelist_cfg nn_stock 60
257    set_namelist namelist_cfg nn_itend 120
258    if [ ${USING_MPMD} == "yes" ] ; then
259       set_xio_using_server iodef.xml true
260    else
261       set_xio_using_server iodef.xml false
262    fi
263    cd ${SETTE_DIR}
264    . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
265
266    cd ${SETTE_DIR}
267    export TEST_NAME="SHORT"
268    . ./prepare_exe_dir.sh
269    cd ${EXE_DIR}
270    set_namelist namelist_cfg cn_exp \"LOCK_SHORT\"
271    set_namelist namelist_cfg nn_it000 61
272    set_namelist namelist_cfg nn_itend 120
273    set_namelist namelist_cfg nn_stock 60
274    set_namelist namelist_cfg ln_rstart .true.
275    set_namelist namelist_cfg nn_rstctl 2
276    set_namelist namelist_cfg cn_ocerst_in \"LOCK_LONG_00000060_restart\"
277    if [ ${USING_MPMD} == "yes" ] ; then
278       set_xio_using_server iodef.xml true
279    else
280       set_xio_using_server iodef.xml false
281    fi
282    ln -sf ../LONG/LOCK_LONG_00000060_restart.nc .
283    if [ ${USING_MPMD} == "yes" ] ; then
284       set_xio_using_server iodef.xml true
285    else
286       set_xio_using_server iodef.xml false
287    fi
288    cd ${SETTE_DIR}
289    . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
290    cd ${SETTE_DIR}
291    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
292
293    ## Test for all advection, vector form, flux form: test runability and complete all time steps
294    ## Needed namelist-xxxx for every type of run tested
295    cd ${CONFIG_DIR}/${NEW_CONF}/EXP00
296
297    for file in $(echo `ls namelist_*_cfg `) ; do
298        TEST_NAME=`ls $file | sed -e "s/namelist_//" | sed -e "s/_cfg//"`
299        TEST_NAME="EXP-${TEST_NAME}"
300        `mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}`
301        export TEST_NAME="${TEST_NAME}"
302         ## 
303        cd ${SETTE_DIR}
304        . ./param.cfg
305        . ./all_functions.sh
306        . ./prepare_exe_dir.sh
307        JOB_FILE=${EXE_DIR}/run_job.sh
308        NPROC=1
309        if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
310        cd ${EXE_DIR}
311        if [ ${USING_MPMD} == "yes" ] ; then
312           set_xio_using_server iodef.xml true
313        else
314           set_xio_using_server iodef.xml false
315        fi
316        cd ${SETTE_DIR}
317        . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
318        cd ${SETTE_DIR}
319        . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
320       ##
321   done
322fi
323
324# ---------
325# VORTEX
326# ---------
327if [ ${config} -eq 3 ] ;  then
328    ## Restartability tests for VORTEX
329    export TEST_NAME="LONG"
330    cd ${MAIN_DIR}
331    . ./makenemo -m ${CMP_NAM} -n VORTEX_ST -a VORTEX -j 8 del_key ${DEL_KEYS}
332    cd ${SETTE_DIR}
333    . ./param.cfg
334    . ./all_functions.sh
335    . ./prepare_exe_dir.sh
336    JOB_FILE=${EXE_DIR}/run_job.sh
337    NPROC=1
338    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
339    cd ${EXE_DIR}
340    set_namelist namelist_cfg cn_exp \"VORTEX_LONG\"
341    set_namelist namelist_cfg nn_it000 1
342    set_namelist namelist_cfg nn_stock 60
343    set_namelist namelist_cfg nn_itend 120
344    if [ ${USING_MPMD} == "yes" ] ; then
345       set_xio_using_server iodef.xml true
346    else
347       set_xio_using_server iodef.xml false
348    fi
349    cd ${SETTE_DIR}
350    . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
351
352    cd ${SETTE_DIR}
353    export TEST_NAME="SHORT"
354    . ./prepare_exe_dir.sh
355    cd ${EXE_DIR}
356    set_namelist namelist_cfg cn_exp \"VORTEX_SHORT\"
357    set_namelist namelist_cfg nn_it000 61
358    set_namelist namelist_cfg nn_itend 120
359    set_namelist namelist_cfg nn_stock 60
360    set_namelist namelist_cfg ln_rstart .true.
361    set_namelist namelist_cfg nn_rstctl 2
362    set_namelist namelist_cfg cn_ocerst_in \"VORTEX_LONG_00000060_restart\"
363    if [ ${USING_MPMD} == "yes" ] ; then
364       set_xio_using_server iodef.xml true
365    else
366       set_xio_using_server iodef.xml false
367    fi
368    ln -sf ../LONG/VORTEX_LONG_00000060_restart.nc .
369    if [ ${USING_MPMD} == "yes" ] ; then
370       set_xio_using_server iodef.xml true
371    else
372       set_xio_using_server iodef.xml false
373    fi
374    cd ${SETTE_DIR}
375    . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
376    cd ${SETTE_DIR}
377    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
378
379
380    ## Test for all advection, vert. coordinates, vector form, flux form: test runability and complete all time steps
381    ## Needed namelist-xxxx for every type of run tested
382    cd ${CONFIG_DIR}/${NEW_CONF}/EXP00
383
384    for file in $(echo `ls namelist_*_cfg `) ; do
385        TEST_NAME=`ls $file | sed -e "s/namelist_//" | sed -e "s/_cfg//"`
386        TEST_NAME="EXP-${TEST_NAME}"
387        `mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}`
388        export TEST_NAME="${TEST_NAME}"
389         ## 
390        cd ${SETTE_DIR}
391        . ./param.cfg
392        . ./all_functions.sh
393        . ./prepare_exe_dir.sh
394        JOB_FILE=${EXE_DIR}/run_job.sh
395        NPROC=1
396        if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
397        cd ${EXE_DIR}
398        if [ ${USING_MPMD} == "yes" ] ; then
399           set_xio_using_server iodef.xml true
400        else
401           set_xio_using_server iodef.xml false
402        fi
403        cd ${SETTE_DIR}
404        . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
405        cd ${SETTE_DIR}
406        . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
407       ##
408    done
409fi
410
411
412# ---------
413# SAS_BIPER
414# ---------
415if [ ${config} -eq 5 ] ;  then 
416## Restartability tests for SAS_BIPER
417    export TEST_NAME="LONG"
418    cd ${MAIN_DIR}
419    . ./makenemo -m ${CMP_NAM} -n SAS_BIPER_ST -a SAS_BIPER -j 8  del_key ${DEL_KEYS}
420    cd ${SETTE_DIR}
421    . ./param.cfg
422    . ./all_functions.sh
423    . ./prepare_exe_dir.sh
424    JOB_FILE=${EXE_DIR}/run_job.sh
425    NPROC=1
426    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
427    cd ${EXE_DIR}
428    set_namelist namelist_cfg cn_exp \"SAS_BIPER_LONG\"
429    set_namelist namelist_cfg nn_it000 1
430    set_namelist namelist_cfg nn_itend 200
431    set_namelist namelist_cfg nn_stock 100
432   
433    #set_namelist namelist_ice_cfg ln_icethd .true.
434    set_namelist namelist_ice_cfg ln_icedyn .true.
435    set_namelist namelist_ice_cfg ln_dynFULL .true.
436    set_namelist namelist_ice_cfg ln_dynRHGADV .false.
437    set_namelist namelist_ice_cfg ln_dynADV .false.
438   
439    set_namelist 1_namelist_cfg cn_exp \"SAS_BIPER_LONG\"
440    set_namelist 1_namelist_cfg nn_it000 1
441    set_namelist 1_namelist_cfg nn_itend 600
442    set_namelist 1_namelist_cfg nn_stock 300
443   
444    #set_namelist 1_namelist_ice_cfg ln_icethd .true.
445    set_namelist 1_namelist_ice_cfg ln_icedyn .true.
446    set_namelist 1_namelist_ice_cfg ln_dynFULL .true.
447    set_namelist 1_namelist_ice_cfg ln_dynRHGADV .false.
448    set_namelist 1_namelist_ice_cfg ln_dynADV .false.
449    if [ ${USING_MPMD} == "yes" ] ; then
450        set_xio_using_server iodef.xml true
451    else
452        set_xio_using_server iodef.xml false
453    fi
454    cd ${SETTE_DIR}
455    . ./prepare_job.sh input_SASBIPER.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
456   
457    cd ${SETTE_DIR}
458    export TEST_NAME="SHORT"
459    . ./prepare_exe_dir.sh
460    cd ${EXE_DIR}
461    set_namelist namelist_cfg cn_exp \"SAS_BIPER_SHORT\"
462    set_namelist namelist_cfg nn_it000 101
463    set_namelist namelist_cfg nn_itend 200
464    set_namelist namelist_cfg nn_stock 100
465    set_namelist namelist_cfg ln_rstart .true.
466    set_namelist namelist_cfg nn_rstctl 2
467   
468    #set_namelist namelist_ice_cfg ln_icethd .true.
469    set_namelist namelist_ice_cfg ln_icedyn .true.
470    set_namelist namelist_ice_cfg ln_dynFULL .true.
471    set_namelist namelist_ice_cfg ln_dynRHGADV .false.
472    set_namelist namelist_ice_cfg ln_dynADV .false.
473    set_namelist namelist_cfg cn_ocerst_in \"SAS_BIPER_LONG_00000100_restart\"
474    set_namelist namelist_ice_cfg cn_icerst_in \"SAS_BIPER_LONG_00000100_restart_ice\"
475   
476    set_namelist 1_namelist_cfg cn_exp \"SAS_BIPER_SHORT\"
477    set_namelist 1_namelist_cfg nn_it000 301
478    set_namelist 1_namelist_cfg nn_itend 600
479    set_namelist 1_namelist_cfg nn_stock 300
480    set_namelist 1_namelist_cfg ln_rstart .true.
481    set_namelist 1_namelist_cfg nn_rstctl 2
482   
483    #set_namelist 1_namelist_ice_cfg ln_icethd .true.
484    set_namelist 1_namelist_ice_cfg ln_icedyn .true.
485    set_namelist 1_namelist_ice_cfg ln_dynFULL .true.
486    set_namelist 1_namelist_ice_cfg ln_dynRHGADV .false.
487    set_namelist 1_namelist_ice_cfg ln_dynADV .false.
488    set_namelist 1_namelist_cfg cn_ocerst_in \"SAS_BIPER_LONG_00000300_restart\"
489    set_namelist 1_namelist_ice_cfg cn_icerst_in \"SAS_BIPER_LONG_00000300_restart_ice\"
490   
491   
492    if [ ${USING_MPMD} == "yes" ] ; then
493        set_xio_using_server iodef.xml true
494    else
495        set_xio_using_server iodef.xml false
496    fi
497    if [ $NPROC -eq 1 ] ;  then
498        ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart.nc .
499        ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice.nc .
500        ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart.nc .
501        ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice.nc .
502    else
503        for (( i=1; i<=$NPROC; i++)) ; do
504            L_NPROC=$(( $i - 1 ))
505            L_NPROC=`printf "%04d\n" ${L_NPROC}`
506            ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_${L_NPROC}.nc .
507            ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice_${L_NPROC}.nc .
508            ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_${L_NPROC}.nc .
509            ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice_${L_NPROC}.nc .
510        done
511    fi
512    if [ ${USING_MPMD} == "yes" ] ; then
513        set_xio_using_server iodef.xml true
514    else
515        set_xio_using_server iodef.xml false
516    fi
517    if [ $NPROC -eq 1 ] ;  then
518        ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart.nc .
519        ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice.nc .
520   ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart.nc .
521        ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice.nc .
522    else
523        for (( i=1; i<=$NPROC; i++)) ; do
524            L_NPROC=$(( $i - 1 ))
525            L_NPROC=`printf "%04d\n" ${L_NPROC}`
526            ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_${L_NPROC}.nc .
527            ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice_${L_NPROC}.nc .
528            ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_${L_NPROC}.nc .
529            ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice_${L_NPROC}.nc .
530        done
531    fi
532    if [ ${USING_MPMD} == "yes" ] ; then
533        set_xio_using_server iodef.xml true
534    else
535        set_xio_using_server iodef.xml false
536    fi
537    cd ${SETTE_DIR}
538    . ./prepare_job.sh input_SASBIPER.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
539    cd ${SETTE_DIR}
540    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
541   
542fi
543
544# ------
545# ISOMIP
546# ------
547if [ ${config} -eq 6 ] ;  then
548## Restartability tests
549    export TEST_NAME="LONG"
550    cd ${MAIN_DIR}
551    . ./makenemo -m ${CMP_NAM} -n ISOMIP_ST -a ISOMIP -j 8 del_key ${DEL_KEYS}
552    cd ${SETTE_DIR}
553    . ./param.cfg
554    . ./all_functions.sh
555    . ./prepare_exe_dir.sh
556    JOB_FILE=${EXE_DIR}/run_job.sh
557    NPROC=15
558    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
559    cd ${EXE_DIR}
560    set_namelist namelist_cfg cn_exp \"ISOMIP_LONG\"
561    set_namelist namelist_cfg nn_it000 1
562    set_namelist namelist_cfg nn_itend 96
563    set_namelist namelist_cfg nn_stock 48
564    set_namelist namelist_cfg jpni 5
565    set_namelist namelist_cfg jpnj 3
566    set_namelist namelist_cfg jpnij 15
567    if [ ${USING_MPMD} == "yes" ] ; then
568       set_xio_using_server iodef.xml true
569    else
570       set_xio_using_server iodef.xml false
571    fi
572    cd ${SETTE_DIR}
573    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
574
575    cd ${SETTE_DIR}
576    export TEST_NAME="SHORT"
577    . ./prepare_exe_dir.sh
578    cd ${EXE_DIR}
579    set_namelist namelist_cfg cn_exp \"ISOMIP_SHORT\"
580    set_namelist namelist_cfg nn_it000 49
581    set_namelist namelist_cfg nn_itend 96
582    set_namelist namelist_cfg nn_stock 48
583    set_namelist namelist_cfg ln_rstart .true.
584    set_namelist namelist_cfg nn_rstctl 2
585    set_namelist namelist_cfg jpni 5
586    set_namelist namelist_cfg jpnj 3
587    set_namelist namelist_cfg jpnij 15
588    set_namelist namelist_cfg cn_ocerst_in \"ISOMIP_LONG_00000048_restart\"
589    if [ ${USING_MPMD} == "yes" ] ; then
590       set_xio_using_server iodef.xml true
591    else
592       set_xio_using_server iodef.xml false
593    fi
594    for (( i=1; i<=$NPROC; i++)) ; do
595        L_NPROC=$(( $i - 1 ))
596        L_NPROC=`printf "%04d\n" ${L_NPROC}`
597        ln -sf ../LONG/ISOMIP_LONG_00000048_restart_${L_NPROC}.nc .
598    done
599    if [ ${USING_MPMD} == "yes" ] ; then
600       set_xio_using_server iodef.xml true
601    else
602       set_xio_using_server iodef.xml false
603    fi
604    cd ${SETTE_DIR}
605    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
606    cd ${SETTE_DIR}
607    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
608
609## Reproducibility tests
610    export TEST_NAME="REPRO_7_3"
611    cd ${MAIN_DIR}
612    cd ${SETTE_DIR}
613    . ./param.cfg
614    . ./all_functions.sh
615    . ./prepare_exe_dir.sh
616    JOB_FILE=${EXE_DIR}/run_job.sh
617    NPROC=21
618    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
619    cd ${EXE_DIR}
620    set_namelist namelist_cfg cn_exp \"ISOMIP_73\"
621    set_namelist namelist_cfg nn_it000 1
622    set_namelist namelist_cfg nn_itend 48
623    set_namelist namelist_cfg jpni 7
624    set_namelist namelist_cfg jpnj 3
625    set_namelist namelist_cfg jpnij 21
626    if [ ${USING_MPMD} == "yes" ] ; then
627       set_xio_using_server iodef.xml true
628    else
629       set_xio_using_server iodef.xml false
630    fi
631    cd ${SETTE_DIR}
632    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
633    cd ${SETTE_DIR}
634    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
635
636    cd ${SETTE_DIR}
637    export TEST_NAME="REPRO_8_4"
638    . ./prepare_exe_dir.sh
639    JOB_FILE=${EXE_DIR}/run_job.sh
640    NPROC=32
641    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
642    cd ${EXE_DIR}
643    set_namelist namelist_cfg cn_exp \"ISOMIP_84\"
644    set_namelist namelist_cfg nn_it000 1
645    set_namelist namelist_cfg nn_itend 48
646    set_namelist namelist_cfg jpni 8
647    set_namelist namelist_cfg jpnj 4
648    set_namelist namelist_cfg jpnij 32
649    if [ ${USING_MPMD} == "yes" ] ; then
650       set_xio_using_server iodef.xml true
651    else
652       set_xio_using_server iodef.xml false
653    fi
654    cd ${SETTE_DIR}
655    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
656    cd ${SETTE_DIR}
657    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
658
659fi
660
661#----
662done
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