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Changeset 10146 – NEMO

Changeset 10146


Ignore:
Timestamp:
2018-09-20T18:06:07+02:00 (6 years ago)
Author:
nicolasmartin
Message:

Reorganisation for future addition of .rst files from users wiki extraction

  • Create root directories latex and rst for tidy up
  • Move namelists folder to the root with the aim to gather later all namelist groups here (OCE, ICE & TOP) Also building scripts have been modified so that figures is now expected to be present at the root
  • Create bin directory with namelist utilities (check and update)
  • Under rst, add 4 dummy files that would gather the whole documentation existing currently in users wiki
    • model_interfacing.rst
    • reference_configurations.rst
    • setup_configuration.rst
    • test_cases.rst
Location:
NEMO/trunk/doc
Files:
8 added
4 deleted
19 edited
4 copied
8 moved

Legend:

Unmodified
Added
Removed

  • NEMO/trunk/doc/PDF_creation.sh

    r10139 r10146  
    11#!/bin/sh 
    22 
    3 ./inc/clean.sh 
    4 ./inc/build.sh 
    53 
    6 cd tex_main 
    7 pdflatex -shell-escape NEMO_manual 
    8 cd - 
     4export opts='-shell-escape -interaction=nonstopmode' 
     5model='NEMO' 
     6 
     7clean() { 
     8    ## Delete latex build files 
     9    find latex -regextype posix-extended -regex ".*\.(aux|log|maf|mtc|out|toc).*" -exec rm {} \; 
     10 
     11    ## Remove 'minted' directories 
     12    find latex -type d -name '_minted*' -exec rm -r {} \; 
     13 
     14    ## HTML exports 
     15    find latex -type d -name 'html*'    -exec rm -r {} \; 
     16} 
     17 
     18build() { 
     19    cd latex/$1/main 
     20 
     21    latex     $opts              $1'_manual' > /dev/null 
     22    makeindex -s $1'_manual'.ist $1'_manual' > /dev/null 
     23    bibtex                       $1'_manual' > /dev/null 
     24    #latex     $opts              $1'_manual' > /dev/null 
     25    pdflatex  $opts              $1'_manual' > /dev/null 
     26 
     27    mv $1'_manual'.pdf ../../.. 
     28    cd - 
     29} 
     30 
     31clean 
     32build    $model 
    933 
    1034exit 0 

  • NEMO/trunk/doc/bin/nlsts_check.sh

    r10139 r10146  
    11#!/bin/sh 
    22 
    3 echo 'Namelists not included in the manual:' 
     3if [[ $* != '' ]]; then 
    44 
    5 for nlst in nam*; do 
    6    [[ ! $( grep "forfile{../namelists/$nlst}" ../tex_sub/*.tex ) ]] && printf "$nlst " 
     5    if [[ $1 = 'all' ]]; then 
     6        models='NEMO SI3 TOP' 
     7    else 
     8        models=$1 
     9    fi 
     10 
     11else 
     12    models='NEMO' 
     13fi 
     14 
     15for model in $models; do 
     16    [[ $model =~ ^(SI3|TOP)$ ]] && continue 
     17    echo 'Namelists not included in the '$model' manual:' 
     18 
     19    for nlst in $( ls namelists ); do 
     20 
     21        if [[ ! $( grep "\\nlst{$nlst}" ./latex/$model/subfiles/*.tex ) ]]; then 
     22            printf "$nlst " 
     23        fi 
     24 
     25    done 
     26 
     27    echo 
     28 
    729done 
    830 
    9 echo 
    10  
    1131exit 0 

  • NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.sty

    r10125 r10146  
    3030 
    3131\captionsetup{margin=10pt, font={small}, labelsep=colon, labelfont={bf}} 
    32 \graphicspath{{../figures/}} 
     32\graphicspath{{../../../figures/}} 
    3333\hypersetup{ 
    3434   pdftitle={NEMO ocean engine}, pdfauthor={Gurvan Madec, and the NEMO team}, 
    … …  
    4444 
    4545\pagestyle{fancy} 
    46 \bibliographystyle{../tex_sub/ametsoc} 
     46\bibliographystyle{../main/ametsoc} 
    4747 
    4848 
    … …  
    168168 
    169169\newcommand{\doi}[1]{\href{http://dx.doi.org/#1}{full-text}} 
     170 
     171\newcommand{\nlst}[1]{\forfile{../../../namelists/#1}} 

  • NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.tex

    r9394 r10146  
    1515%% ============================================================================== 
    1616 
    17 \usepackage{../tex_main/NEMO_manual} 
    18 \usepackage{../tex_sub/NEMO_minted} 
     17%% Custom style 
     18\usepackage{../main/NEMO_manual} 
     19\usepackage{../main/NEMO_minted} 
    1920 
    2021\makeindex 
    … …  
    7273%% Abstract - Foreword 
    7374 
    74 \subfile{../tex_sub/abstract_foreword} 
     75\subfile{../subfiles/abstract_foreword} 
    7576 
    7677 
    7778% Introduction 
    7879 
    79 \subfile{../tex_sub/introduction} 
     80\subfile{../subfiles/introduction} 
    8081 
    8182 
    8283% Chapters 
    8384 
    84 \subfile{../tex_sub/chap_model_basics} 
     85\subfile{../subfiles/chap_model_basics} 
    8586 
    86 \subfile{../tex_sub/chap_time_domain}           % Time discretisation (time stepping strategy) 
     87\subfile{../subfiles/chap_time_domain}   % Time discretisation (time stepping strategy) 
    8788 
    88 \subfile{../tex_sub/chap_DOM}          % Space discretisation 
     89\subfile{../subfiles/chap_DOM}           % Space discretisation 
    8990 
    90 \subfile{../tex_sub/chap_TRA}          % Tracer advection/diffusion equation 
     91\subfile{../subfiles/chap_TRA}           % Tracer advection/diffusion equation 
    9192 
    92 \subfile{../tex_sub/chap_DYN}          % Dynamics : momentum equation 
     93\subfile{../subfiles/chap_DYN}           % Dynamics : momentum equation 
    9394 
    94 \subfile{../tex_sub/chap_SBC}          % Surface Boundary Conditions 
     95\subfile{../subfiles/chap_SBC}           % Surface Boundary Conditions 
    9596 
    96 \subfile{../tex_sub/chap_LBC}          % Lateral Boundary Conditions 
     97\subfile{../subfiles/chap_LBC}           % Lateral Boundary Conditions 
    9798 
    98 \subfile{../tex_sub/chap_LDF}          % Lateral diffusion 
     99\subfile{../subfiles/chap_LDF}           % Lateral diffusion 
    99100 
    100 \subfile{../tex_sub/chap_ZDF}          % Vertical diffusion 
     101\subfile{../subfiles/chap_ZDF}           % Vertical diffusion 
    101102 
    102 \subfile{../tex_sub/chap_DIA}          % Outputs and Diagnostics 
     103\subfile{../subfiles/chap_DIA}           % Outputs and Diagnostics 
    103104 
    104 \subfile{../tex_sub/chap_OBS}          % Observation operator 
     105\subfile{../subfiles/chap_OBS}           % Observation operator 
    105106 
    106 \subfile{../tex_sub/chap_ASM}          % Assimilation increments 
     107\subfile{../subfiles/chap_ASM}           % Assimilation increments 
    107108 
    108 \subfile{../tex_sub/chap_STO}          % Stochastic param. 
     109\subfile{../subfiles/chap_STO}           % Stochastic param. 
    109110 
    110 \subfile{../tex_sub/chap_misc}            % Miscellaneous topics 
     111\subfile{../subfiles/chap_misc}          % Miscellaneous topics 
    111112 
    112 \subfile{../tex_sub/chap_CONFIG}       % Predefined configurations 
     113\subfile{../subfiles/chap_CONFIG}        % Predefined configurations 
    113114 
    114115 
    … …  
    117118\appendix 
    118119 
    119 \subfile{../tex_sub/annex_A}              % Generalised vertical coordinate 
     120\subfile{../subfiles/annex_A}             % Generalised vertical coordinate 
    120121 
    121 \subfile{../tex_sub/annex_B}              % Diffusive operator 
     122\subfile{../subfiles/annex_B}             % Diffusive operator 
    122123 
    123 \subfile{../tex_sub/annex_C}              % Discrete invariants of the eqs. 
     124\subfile{../subfiles/annex_C}             % Discrete invariants of the eqs. 
    124125 
    125 \subfile{../tex_sub/annex_iso}            % Isoneutral diffusion using triads 
     126\subfile{../subfiles/annex_iso}           % Isoneutral diffusion using triads 
    126127 
    127 \subfile{../tex_sub/annex_D}              % Coding rules 
     128\subfile{../subfiles/annex_D}             % Coding rules 
    128129 
    129130%% Not included 
    130 %\subfile{../tex_sub/chap_conservation}   % 
    131 %\subfile{../tex_sub/annex_E}          % Notes on some on going staff 
    132 %\subfile{../tex_sub/annex_Fox-Kemper} % Notes on Fox-Kemper 
    133 %\subfile{../tex_sub/annex_EVP}           % Notes on EVP 
     131%\subfile{../subfiles/chap_conservation}  % 
     132%\subfile{../subfiles/annex_E}            % Notes on some on going staff 
     133%\subfile{../subfiles/annex_Fox-Kemper}   % Notes on Fox-Kemper 
     134%\subfile{../subfiles/annex_EVP}          % Notes on EVP 
    134135 
    135136 
    … …  
    145146\phantomsection 
    146147\addcontentsline{toc}{chapter}{Bibliography} 
    147 \bibliography{../tex_main/NEMO_manual} 
     148\bibliography{../main/NEMO_manual} 
    148149 
    149150 

  • NEMO/trunk/doc/latex/NEMO/main/NEMO_minted.sty

    r10139 r10146  
    1818%% ============================================================================== 
    1919 
    20 \newmint[forline]{fortran}{}        % \forline|...| 
    21 \newmint[xmlline]{xml}{}         % \xmlline|...| 
    22 \newmint[cmd]{console}{}         % \cmd|...| 
     20\newmint[forline]{fortran}{}   % \forline|...| 
     21\newmint[xmlline]{xml}{}       % \xmlline|...| 
     22\newmint[cmd]{console}{}       % \cmd|...| 
    2323 
    2424 
    … …  
    2626%% ============================================================================== 
    2727 
    28 \newminted[forlines]{fortran}{}        % \begin{forlines} 
    29 \newminted[xmllines]{xml}{}         % \begin{xmllines} 
    30 \newminted[cmds]{console}{}         % \begin{cmds} 
    31 \newminted[clines]{c}{fontsize=\tiny}        % \begin{clines} 
     28\newminted[forlines]{fortran}{}         % \begin{forlines} 
     29\newminted[xmllines]{xml}{}             % \begin{xmllines} 
     30\newminted[cmds]{console}{}             % \begin{cmds} 
     31\newminted[clines]{c}{fontsize=\tiny}   % \begin{clines} 
    3232 
    3333 
    3434%% File 
    3535 
    36 \newmintedfile[forfile]{fortran}{fontsize=\tiny}         % \forfile{../namelists/nam...} 
     36\newmintedfile[forfile]{fortran}{fontsize=\tiny}   % \forfile{../namelists/nam...} 
    3737 
    3838 
    … …  
    4040%% ============================================================================== 
    4141 
    42 \newmintinline[forcode]{fortran}{fontsize=auto, frame=lines}         % \forcode{...} 
    43 \newmintinline[xmlcode]{xml}{    fontsize=auto, frame=lines}         % \xmlcode{...} 
    44 \newmintinline[snippet]{console}{fontsize=auto, frame=lines}         % \snippet{...} 
     42\newmintinline[forcode]{fortran}{fontsize=auto, frame=lines}   % \forcode{...} 
     43\newmintinline[xmlcode]{xml}{    fontsize=auto, frame=lines}   % \xmlcode{...} 
     44\newmintinline[snippet]{console}{fontsize=auto, frame=lines}   % \snippet{...} 

  • NEMO/trunk/doc/latex/NEMO/subfiles/annex_iso.tex

    r9414 r10146  
    1111\section{Choice of \protect\ngn{namtra\_ldf} namelist parameters} 
    1212%-----------------------------------------nam_traldf------------------------------------------------------ 
    13 \forfile{../namelists/namtra_ldf} 
     13 
     14\nlst{namtra_ldf} 
    1415%--------------------------------------------------------------------------------------------------------- 
    1516 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_ASM.tex

    r9414 r10146  
    131131 
    132132%------------------------------------------namasm----------------------------------------------------- 
    133 %\forfile{../namelists/namasm} 
     133% 
     134\nlst{nam_asminc} 
    134135%------------------------------------------------------------------------------------------------------------- 
    135136 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_CONFIG.tex

    r9407 r10146  
    2626 
    2727%------------------------------------------namcfg---------------------------------------------------- 
    28 \forfile{../namelists/namcfg} 
     28 
     29\nlst{namcfg} 
    2930%------------------------------------------------------------------------------------------------------------- 
    3031 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex

    r9414 r10146  
    11611161 
    11621162%------------------------------------------namnc4---------------------------------------------------- 
    1163 \forfile{../namelists/namnc4} 
     1163 
     1164\nlst{namnc4} 
    11641165%------------------------------------------------------------------------------------------------------------- 
    11651166 
    … …  
    12641265 
    12651266%------------------------------------------namtrd---------------------------------------------------- 
    1266 \forfile{../namelists/namtrd}  
     1267 
     1268\nlst{namtrd}  
    12671269%------------------------------------------------------------------------------------------------------------- 
    12681270 
    … …  
    13051307\label{sec:FLO} 
    13061308%--------------------------------------------namflo------------------------------------------------------- 
    1307 \forfile{../namelists/namflo}  
     1309 
     1310\nlst{namflo}  
    13081311%-------------------------------------------------------------------------------------------------------------- 
    13091312 
    … …  
    14081411 
    14091412%------------------------------------------namdia_harm---------------------------------------------------- 
    1410 %\forfile{../namelists/namdia_harm} 
     1413% 
     1414\nlst{nam_diaharm} 
    14111415%---------------------------------------------------------------------------------------------------------- 
    14121416 
    … …  
    14511455 
    14521456%------------------------------------------namdct---------------------------------------------------- 
    1453 \forfile{../namelists/namdct} 
     1457 
     1458\nlst{namdct} 
    14541459%------------------------------------------------------------------------------------------------------------- 
    14551460 
    … …  
    17731778 
    17741779%------------------------------------------namptr----------------------------------------- 
    1775 \forfile{../namelists/namptr}  
     1780 
     1781\nlst{namptr}  
    17761782%----------------------------------------------------------------------------------------- 
    17771783 
    … …  
    18141820 
    18151821%------------------------------------------nam_dia25h------------------------------------- 
    1816 \forfile{../namelists/nam_dia25h} 
     1822 
     1823\nlst{nam_dia25h} 
    18171824%----------------------------------------------------------------------------------------- 
    18181825 
    … …  
    18281835 
    18291836%------------------------------------------nam_diatmb----------------------------------------------------- 
    1830 \forfile{../namelists/nam_diatmb} 
     1837 
     1838\nlst{nam_diatmb} 
    18311839%---------------------------------------------------------------------------------------------------------- 
    18321840 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIU.tex

    r9407 r10146  
    3434 
    3535Both the cool skin and warm layer models are controlled through the namelist \ngn{namdiu}: 
    36 \forfile{../namelists/namdiu} 
     36 
     37\nlst{namdiu} 
    3738This namelist contains only two variables: 
    3839\begin{description} 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_DOM.tex

    r9414 r10146  
    309309  
    310310These fields can be read in an domain input file which name is setted in \np{cn\_domcfg} parameter specified in \ngn{namcfg}. 
    311 \forfile{../namelists/namcfg} 
     311 
     312\nlst{namcfg} 
    312313or they can be defined in an analytical way in MY\_SRC directory of the configuration. 
    313314For Reference Configurations of NEMO input domain files are supplied by NEMO System Team. For analytical definition of input fields two routines are supplied: \mdl{userdef\_hgr} and \mdl{userdef\_zgr}. They are an example of GYRE configuration parameters, and they are available in NEMO/OPA\_SRC/USR directory, they provide the horizontal and vertical mesh.  
    … …  
    428429\label{sec:DOM_zgr} 
    429430%-----------------------------------------nam_zgr & namdom------------------------------------------- 
    430 %\forfile{../namelists/namzgr}  
    431 \forfile{../namelists/namdom}  
     431% 
     432%\nlst{namzgr}  
     433 
     434\nlst{namdom}  
    432435%------------------------------------------------------------------------------------------------------------- 
    433436 
    … …  
    687690\label{subsec:DOM_zps} 
    688691%--------------------------------------------namdom------------------------------------------------------- 
    689 \forfile{../namelists/namdom}  
     692 
     693\nlst{namdom}  
    690694%-------------------------------------------------------------------------------------------------------------- 
    691695 
    … …  
    719723\label{subsec:DOM_sco} 
    720724%------------------------------------------nam_zgr_sco--------------------------------------------------- 
    721 %\forfile{../namelists/namzgr_sco}  
     725% 
     726%\nlst{namzgr_sco}  
    722727%-------------------------------------------------------------------------------------------------------------- 
    723728Options are defined in \ngn{namzgr\_sco}. 
    … …  
    909914\label{sec:DTA_tsd} 
    910915%-----------------------------------------namtsd------------------------------------------- 
    911 \forfile{../namelists/namtsd}  
     916 
     917\nlst{namtsd}  
    912918%------------------------------------------------------------------------------------------ 
    913919 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_DYN.tex

    r9414 r10146  
    160160\label{sec:DYN_adv_cor_vect} 
    161161%-----------------------------------------nam_dynadv---------------------------------------------------- 
    162 \forfile{../namelists/namdyn_adv}  
     162 
     163\nlst{namdyn_adv}  
    163164%------------------------------------------------------------------------------------------------------------- 
    164165 
    … …  
    179180\label{subsec:DYN_vor} 
    180181%------------------------------------------nam_dynvor---------------------------------------------------- 
    181 \forfile{../namelists/namdyn_vor}  
     182 
     183\nlst{namdyn_vor}  
    182184%------------------------------------------------------------------------------------------------------------- 
    183185 
    … …  
    386388\label{sec:DYN_adv_cor_flux} 
    387389%------------------------------------------nam_dynadv---------------------------------------------------- 
    388 \forfile{../namelists/namdyn_adv}  
     390 
     391\nlst{namdyn_adv}  
    389392%------------------------------------------------------------------------------------------------------------- 
    390393 
    … …  
    528531\label{sec:DYN_hpg} 
    529532%------------------------------------------nam_dynhpg--------------------------------------------------- 
    530 \forfile{../namelists/namdyn_hpg}  
     533 
     534\nlst{namdyn_hpg}  
    531535%------------------------------------------------------------------------------------------------------------- 
    532536 
    … …  
    724728\label{sec:DYN_spg} 
    725729%-----------------------------------------nam_dynspg---------------------------------------------------- 
    726 \forfile{../namelists/namdyn_spg}  
     730 
     731\nlst{namdyn_spg}  
    727732%------------------------------------------------------------------------------------------------------------ 
    728733 
    … …  
    784789\label{subsec:DYN_spg_ts} 
    785790%------------------------------------------namsplit----------------------------------------------------------- 
    786 %\forfile{../namelists/namsplit} 
     791% 
     792%\nlst{namsplit} 
    787793%------------------------------------------------------------------------------------------------------------- 
    788794 
    … …  
    992998\label{sec:DYN_ldf} 
    993999%------------------------------------------nam_dynldf---------------------------------------------------- 
    994 \forfile{../namelists/namdyn_ldf}  
     1000 
     1001\nlst{namdyn_ldf}  
    9951002%------------------------------------------------------------------------------------------------------------- 
    9961003 
    … …  
    11351142\label{sec:DYN_zdf} 
    11361143%----------------------------------------------namzdf------------------------------------------------------ 
    1137 \forfile{../namelists/namzdf}  
     1144 
     1145\nlst{namzdf}  
    11381146%------------------------------------------------------------------------------------------------------------- 
    11391147 
    … …  
    12121220 
    12131221%----------------------------------------------namdom---------------------------------------------------- 
    1214 \forfile{../namelists/namdom}  
     1222 
     1223\nlst{namdom}  
    12151224%------------------------------------------------------------------------------------------------------------- 
    12161225 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_LBC.tex

    r9667 r10146  
    2020\label{sec:LBC_coast} 
    2121%--------------------------------------------nam_lbc------------------------------------------------------- 
    22 \forfile{../namelists/namlbc}  
     22 
     23\nlst{namlbc}  
    2324%-------------------------------------------------------------------------------------------------------------- 
    2425 
    … …  
    350351 
    351352%-----------------------------------------nambdy-------------------------------------------- 
    352 \forfile{../namelists/nambdy}  
     353 
     354\nlst{nambdy}  
    353355%----------------------------------------------------------------------------------------------- 
    354356%-----------------------------------------nambdy_index-------------------------------------------- 
    355 %\forfile{../namelists/nambdy_index} 
     357% 
     358%\nlst{nambdy_index} 
    356359%----------------------------------------------------------------------------------------------- 
    357360%-----------------------------------------nambdy_dta-------------------------------------------- 
    358 \forfile{../namelists/nambdy_dta}  
     361 
     362\nlst{nambdy_dta}  
    359363%----------------------------------------------------------------------------------------------- 
    360364%-----------------------------------------nambdy_dta-------------------------------------------- 
    361 %\forfile{../namelists/nambdy_dta2}  
     365% 
     366%\nlst{nambdy_dta2}  
    362367%----------------------------------------------------------------------------------------------- 
    363368 
    … …  
    631636 
    632637%-----------------------------------------nambdy_tide-------------------------------------------- 
    633 \forfile{../namelists/nambdy_tide}  
     638 
     639\nlst{nambdy_tide}  
    634640%----------------------------------------------------------------------------------------------- 
    635641 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_LDF.tex

    r9407 r10146  
    2828 
    2929%-----------------------------------nam_traldf - nam_dynldf-------------------------------------------- 
    30 \forfile{../namelists/namtra_ldf}  
    31 \forfile{../namelists/namdyn_ldf}  
     30 
     31\nlst{namtra_ldf}  
     32 
     33\nlst{namdyn_ldf}  
    3234%-------------------------------------------------------------------------------------------------------------- 
    3335 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_OBS.tex

    r9407 r10146  
    8484 
    8585%------------------------------------------namobs_example----------------------------------------------------- 
    86 %\forfile{../namelists/namobs_example} 
     86% 
     87%\nlst{namobs_example} 
    8788%------------------------------------------------------------------------------------------------------------- 
    8889 
    … …  
    114115 
    115116%------------------------------------------namobs-------------------------------------------------------- 
    116 \forfile{../namelists/namobs} 
     117 
     118\nlst{namobs} 
    117119%------------------------------------------------------------------------------------------------------------- 
    118120 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_SBC.tex

    r10092 r10146  
    1111$\ $\newline    % force a new ligne 
    1212%---------------------------------------namsbc-------------------------------------------------- 
    13 \forfile{../namelists/namsbc} 
     13 
     14\nlst{namsbc} 
    1415%-------------------------------------------------------------------------------------------------------------- 
    1516$\ $\newline    % force a new ligne 
    … …  
    425426 
    426427%---------------------------------------namsbc_ana-------------------------------------------------- 
    427 \forfile{../namelists/namsbc_sas} 
     428 
     429\nlst{namsbc_sas} 
    428430%-------------------------------------------------------------------------------------------------------------- 
    429431 
    … …  
    485487 
    486488%---------------------------------------namsbc_ana-------------------------------------------------- 
    487 %\forfile{../namelists/namsbc_ana} 
     489% 
     490%\nlst{namsbc_ana} 
    488491%-------------------------------------------------------------------------------------------------------------- 
    489492 
    … …  
    508511\label{sec:SBC_flx} 
    509512%------------------------------------------namsbc_flx---------------------------------------------------- 
    510 \forfile{../namelists/namsbc_flx}  
     513 
     514\nlst{namsbc_flx}  
    511515%------------------------------------------------------------------------------------------------------------- 
    512516 
    … …  
    547551\label{subsec:SBC_blk_core} 
    548552%------------------------------------------namsbc_core---------------------------------------------------- 
    549 %\forfile{../namelists/namsbc_core} 
     553% 
     554%\nlst{namsbc_core} 
    550555%------------------------------------------------------------------------------------------------------------- 
    551556 
    … …  
    611616\label{subsec:SBC_blk_clio} 
    612617%------------------------------------------namsbc_clio---------------------------------------------------- 
    613 %\forfile{../namelists/namsbc_clio} 
     618% 
     619%\nlst{namsbc_clio} 
    614620%------------------------------------------------------------------------------------------------------------- 
    615621 
    … …  
    651657\label{subsec:SBC_blk_mfs} 
    652658%------------------------------------------namsbc_mfs---------------------------------------------------- 
    653 %\forfile{../namelists/namsbc_mfs} 
     659% 
     660%\nlst{namsbc_mfs} 
    654661%---------------------------------------------------------------------------------------------------------- 
    655662 
    … …  
    689696\label{sec:SBC_cpl} 
    690697%------------------------------------------namsbc_cpl---------------------------------------------------- 
    691 \forfile{../namelists/namsbc_cpl}  
     698 
     699\nlst{namsbc_cpl}  
    692700%------------------------------------------------------------------------------------------------------------- 
    693701 
    … …  
    727735\label{sec:SBC_apr} 
    728736%------------------------------------------namsbc_apr---------------------------------------------------- 
    729 \forfile{../namelists/namsbc_apr}  
     737 
     738\nlst{namsbc_apr}  
    730739%------------------------------------------------------------------------------------------------------------- 
    731740 
    … …  
    762771 
    763772%------------------------------------------nam_tide--------------------------------------- 
    764 \forfile{../namelists/nam_tide} 
     773 
     774\nlst{nam_tide} 
    765775%----------------------------------------------------------------------------------------- 
    766776 
    … …  
    799809\label{sec:SBC_rnf} 
    800810%------------------------------------------namsbc_rnf---------------------------------------------------- 
    801 \forfile{../namelists/namsbc_rnf}  
     811 
     812\nlst{namsbc_rnf}  
    802813%------------------------------------------------------------------------------------------------------------- 
    803814 
    … …  
    914925\label{sec:SBC_isf} 
    915926%------------------------------------------namsbc_isf---------------------------------------------------- 
    916 \forfile{../namelists/namsbc_isf} 
     927 
     928\nlst{namsbc_isf} 
    917929%-------------------------------------------------------------------------------------------------------- 
    918930Namelist variable in \ngn{namsbc}, \np{nn\_isf}, controls the ice shelf representation used.  
    … …  
    9951007\label{sec:SBC_iscpl} 
    9961008%------------------------------------------namsbc_iscpl---------------------------------------------------- 
    997 \forfile{../namelists/namsbc_iscpl} 
     1009 
     1010\nlst{namsbc_iscpl} 
    9981011%-------------------------------------------------------------------------------------------------------- 
    9991012Ice sheet/ocean coupling is done through file exchange at the restart step. NEMO, at each restart step,  
    … …  
    10331046\label{sec:ICB_icebergs} 
    10341047%------------------------------------------namberg---------------------------------------------------- 
    1035 \forfile{../namelists/namberg} 
     1048 
     1049\nlst{namberg} 
    10361050%------------------------------------------------------------------------------------------------------------- 
    10371051 
    … …  
    11041118\label{subsec:SBC_dcy} 
    11051119%------------------------------------------namsbc_rnf---------------------------------------------------- 
    1106 %\forfile{../namelists/namsbc}  
     1120% 
     1121\nlst{namsbc}  
    11071122%------------------------------------------------------------------------------------------------------------- 
    11081123 
    … …  
    11801195\label{subsec:SBC_ssr} 
    11811196%------------------------------------------namsbc_ssr---------------------------------------------------- 
    1182 \forfile{../namelists/namsbc_ssr}  
     1197 
     1198\nlst{namsbc_ssr}  
    11831199%------------------------------------------------------------------------------------------------------------- 
    11841200 
    … …  
    12981314\label{subsec:SBC_wave} 
    12991315%------------------------------------------namwave---------------------------------------------------- 
    1300 \forfile{../namelists/namsbc_wave} 
     1316 
     1317\nlst{namsbc_wave} 
    13011318%------------------------------------------------------------------------------------------------------------- 
    13021319 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_STO.tex

    r9407 r10146  
    124124 
    125125%---------------------------------------namsbc-------------------------------------------------- 
    126 \forfile{../namelists/namsto} 
     126 
     127\nlst{namsto} 
    127128%-------------------------------------------------------------------------------------------------------------- 
    128129 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_TRA.tex

    r9407 r10146  
    6666\label{sec:TRA_adv} 
    6767%------------------------------------------namtra_adv----------------------------------------------------- 
    68 \forfile{../namelists/namtra_adv} 
     68 
     69\nlst{namtra_adv} 
    6970%------------------------------------------------------------------------------------------------------------- 
    7071 
    … …  
    425426\label{sec:TRA_ldf} 
    426427%-----------------------------------------nam_traldf------------------------------------------------------ 
    427 \forfile{../namelists/namtra_ldf} 
     428 
     429\nlst{namtra_ldf} 
    428430%------------------------------------------------------------------------------------------------------------- 
    429431  
    … …  
    639641\label{sec:TRA_zdf} 
    640642%--------------------------------------------namzdf--------------------------------------------------------- 
    641 \forfile{../namelists/namzdf} 
     643 
     644\nlst{namzdf} 
    642645%-------------------------------------------------------------------------------------------------------------- 
    643646 
    … …  
    762765\label{subsec:TRA_qsr} 
    763766%--------------------------------------------namqsr-------------------------------------------------------- 
    764 \forfile{../namelists/namtra_qsr} 
     767 
     768\nlst{namtra_qsr} 
    765769%-------------------------------------------------------------------------------------------------------------- 
    766770 
    … …  
    872876\label{subsec:TRA_bbc} 
    873877%--------------------------------------------nambbc-------------------------------------------------------- 
    874 \forfile{../namelists/nambbc} 
     878 
     879\nlst{nambbc} 
    875880%-------------------------------------------------------------------------------------------------------------- 
    876881%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    … …  
    910915\label{sec:TRA_bbl} 
    911916%--------------------------------------------nambbl--------------------------------------------------------- 
    912 \forfile{../namelists/nambbl} 
     917 
     918\nlst{nambbl} 
    913919%-------------------------------------------------------------------------------------------------------------- 
    914920 
    … …  
    10691075\label{sec:TRA_dmp} 
    10701076%--------------------------------------------namtra_dmp------------------------------------------------- 
    1071 \forfile{../namelists/namtra_dmp} 
     1077 
     1078\nlst{namtra_dmp} 
    10721079%-------------------------------------------------------------------------------------------------------------- 
    10731080 
    … …  
    11531160\label{sec:TRA_nxt} 
    11541161%--------------------------------------------namdom----------------------------------------------------- 
    1155 \forfile{../namelists/namdom} 
     1162 
     1163\nlst{namdom} 
    11561164%-------------------------------------------------------------------------------------------------------------- 
    11571165 
    … …  
    11911199\label{sec:TRA_eosbn2} 
    11921200%--------------------------------------------nameos----------------------------------------------------- 
    1193 \forfile{../namelists/nameos} 
     1201 
     1202\nlst{nameos} 
    11941203%-------------------------------------------------------------------------------------------------------------- 
    11951204 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_ZDF.tex

    r9407 r10146  
    5252\label{subsec:ZDF_cst} 
    5353%--------------------------------------------namzdf--------------------------------------------------------- 
    54 \forfile{../namelists/namzdf} 
     54 
     55\nlst{namzdf} 
    5556%-------------------------------------------------------------------------------------------------------------- 
    5657 
    … …  
    7879 
    7980%--------------------------------------------namric--------------------------------------------------------- 
    80 \forfile{../namelists/namzdf_ric} 
     81 
     82\nlst{namzdf_ric} 
    8183%-------------------------------------------------------------------------------------------------------------- 
    8284 
    … …  
    136138 
    137139%--------------------------------------------namzdf_tke-------------------------------------------------- 
    138 \forfile{../namelists/namzdf_tke} 
     140 
     141\nlst{namzdf_tke} 
    139142%-------------------------------------------------------------------------------------------------------------- 
    140143 
    … …  
    512515 
    513516%--------------------------------------------namzdf_gls--------------------------------------------------------- 
    514 \forfile{../namelists/namzdf_gls} 
     517 
     518\nlst{namzdf_gls} 
    515519%-------------------------------------------------------------------------------------------------------------- 
    516520 
    … …  
    619623 
    620624%--------------------------------------------namzdf_osm--------------------------------------------------------- 
    621 \forfile{../namelists/namzdf_osm} 
     625 
     626\nlst{namzdf_osm} 
    622627%-------------------------------------------------------------------------------------------------------------- 
    623628 
    … …  
    631636 
    632637%--------------------------------------------namzdf-------------------------------------------------------- 
    633 \forfile{../namelists/namzdf} 
     638 
     639\nlst{namzdf} 
    634640%-------------------------------------------------------------------------------------------------------------- 
    635641 
    … …  
    651657 
    652658%--------------------------------------------namzdf-------------------------------------------------------- 
    653 \forfile{../namelists/namzdf} 
     659 
     660\nlst{namzdf} 
    654661%-------------------------------------------------------------------------------------------------------------- 
    655662 
    … …  
    717724 
    718725%--------------------------------------------namzdf-------------------------------------------------------- 
    719 \forfile{../namelists/namzdf} 
     726 
     727\nlst{namzdf} 
    720728%-------------------------------------------------------------------------------------------------------------- 
    721729 
    … …  
    775783 
    776784%-------------------------------------------namzdf_ddm------------------------------------------------- 
    777 %\forfile{../namelists/namzdf_ddm} 
     785% 
     786%\nlst{namzdf_ddm} 
    778787%-------------------------------------------------------------------------------------------------------------- 
    779788 
    … …  
    857866 
    858867%--------------------------------------------nambfr-------------------------------------------------------- 
    859 %\forfile{../namelists/nambfr} 
     868% 
     869%\nlst{nambfr} 
    860870%-------------------------------------------------------------------------------------------------------------- 
    861871 
    … …  
    11961206 
    11971207%--------------------------------------------namzdf_tmx-------------------------------------------------- 
    1198 %\forfile{../namelists/namzdf_tmx} 
     1208% 
     1209%\nlst{namzdf_tmx} 
    11991210%-------------------------------------------------------------------------------------------------------------- 
    12001211 
    … …  
    13181329 
    13191330%--------------------------------------------namzdf_tmx_new------------------------------------------ 
    1320 %\forfile{../namelists/namzdf_tmx_new} 
     1331% 
     1332%\nlst{namzdf_tmx_new} 
    13211333%-------------------------------------------------------------------------------------------------------------- 
    13221334 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_misc.tex

    r9407 r10146  
    124124\noindent Add the logical switch to \ngn{namcfg} in the configuration namelist and set true: 
    125125%--------------------------------------------namcfg-------------------------------------------------------- 
    126 \forfile{../namelists/namcfg} 
     126 
     127\nlst{namcfg} 
    127128%-------------------------------------------------------------------------------------------------------------- 
    128129 
    … …  
    233234\label{sec:MISC_opt} 
    234235%--------------------------------------------namctl------------------------------------------------------- 
    235 \forfile{../namelists/namctl}  
     236 
     237\nlst{namctl}  
    236238%-------------------------------------------------------------------------------------------------------------- 
    237239 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics_zstar.tex

    r9407 r10146  
    7878\label{sec:DYN_hpg_spg} 
    7979%-----------------------------------------nam_dynspg---------------------------------------------------- 
    80 \forfile{../namelists/nam_dynspg}  
     80 
     81\nlst{nam_dynspg}  
    8182%------------------------------------------------------------------------------------------------------------ 
    8283Options are defined through the  \ngn{nam\_dynspg} namelist variables. 
    … …  
    115116\label{subsec:DYN_spg_ts} 
    116117%--------------------------------------------namdom---------------------------------------------------- 
    117 \forfile{../namelists/namdom}  
     118 
     119\nlst{namdom}  
    118120%-------------------------------------------------------------------------------------------------------------- 
    119121The split-explicit free surface formulation used in OPA follows the one proposed by \citet{Griffies2004}. The general idea is to solve the free surface equation with a small time step, while the three dimensional prognostic variables are solved with a longer time step that is a multiple of \np{rdtbt} 

  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_time_domain.tex

    r9407 r10146  
    286286 
    287287%--------------------------------------------namrun------------------------------------------- 
    288 \forfile{../namelists/namrun} 
     288\nlst{namrun} 
    289289%-------------------------------------------------------------------------------------------------------------- 
    290290 
    … …  
    337337\label{subsec:STP_time} 
    338338%--------------------------------------------namrun------------------------------------------- 
    339 \forfile{../namelists/namdom}          
     339 
     340\nlst{namdom}          
    340341%-------------------------------------------------------------------------------------------------------------- 
    341342 
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