Ignore:
Timestamp:
2019-05-20T22:21:43+02:00 (2 years ago)
Author:
nicolasmartin
Message:

Apply more or less same modifications on TOP as for SI3 for compliance
Despite remaining issues with references, TOP manual can be build like NEMO & SI3 with ./build_manual.sh TOP
For the record, the building of the 3 manuals can be launched with ./manual_build.sh all

Location:
NEMO/trunk/doc/latex/TOP/subfiles
Files:
3 edited
1 moved

Legend:

Unmodified
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Removed
  • NEMO/trunk/doc/latex/TOP/subfiles/introduction.tex

    r10896 r11019  
    3737\begin{center} 
    3838\vspace{0cm} 
    39 \includegraphics[width=0.80\textwidth]{../Figures/Fig_TOP_design.png} 
    40 %\includegraphics[height=6cm,angle=-00]{../Figures/Fig_TOP_design.png} 
     39\includegraphics[width=0.80\textwidth]{Fig_TOP_design} 
     40%\includegraphics[height=6cm,angle=-00]{Fig_TOP_design} 
    4141\caption{A schematic view of NEMO-TOP component} 
    4242\label{topdesign} 
  • NEMO/trunk/doc/latex/TOP/subfiles/model_description.tex

    r10896 r11019  
    7171 \subsection{ Advection} 
    7272%------------------------------------------namtrc_adv---------------------------------------------------- 
    73 \forfile{../namelists/namtrc_adv} 
     73\nlst{namtrc_adv} 
    7474%------------------------------------------------------------------------------------------------------------- 
    7575The advection schemes used for the passive tracers are the same than the ones for $T$ and $S$ and described in section 5.1 of \citep{Madec_Bk2008}. The choice of an advection scheme  can be selected independently and  can differ from the ones used for active tracers. This choice is made in the \textit{namtrc\_adv} namelist, by  setting to \textit{true} one and only one of the logicals \textit{ln\_trcadv\_xxx}, the same way of what is done for dynamics. 
     
    7878 \subsection{ Lateral diffusion} 
    7979%------------------------------------------namtrc_ldf---------------------------------------------------- 
    80 \forfile{../namelists/namtrc_ldf} 
     80\nlst{namtrc_ldf} 
    8181%------------------------------------------------------------------------------------------------------------- 
    8282In NEMO v4.0, the passive tracer diffusion has necessarily the same form as the active tracer diffusion, meaning that the numerical scheme must be the same. However the passive tracer mixing coefficient can be chosen as a multiple of the active ones by changing the value of \textit{rn\_ldf\_multi} in namelist \textit{namtrc\_ldf}. The choice of numerical scheme is then set  in the \ngn{namtra\_ldf} namelist for the dynamic described in section 5.2 of \citep{Madec_Bk2008}.  
     
    9191  
    9292%------------------------------------------namtrc_dmp---------------------------------------------------- 
    93 \forfile{../namelists/namtrc_dmp} 
     93\nlst{namtrc_dmp} 
    9494%------------------------------------------------------------------------------------------------------------- 
    9595 
     
    100100  
    101101%------------------------------------------namtrc_rad---------------------------------------------------- 
    102 \forfile{../namelists/namtrc_rad} 
     102\nlst{namtrc_rad} 
    103103%------------------------------------------------------------------------------------------------------------- 
    104104 
     
    110110\label{SMS_models} 
    111111%------------------------------------------namtrc_sms---------------------------------------------------- 
    112 %\forfile{../namelists/namtrc} 
     112%\nlst{namtrc} 
    113113%------------------------------------------------------------------------------------------------------------- 
    114114 
     
    116116%------------------------------------------namage---------------------------------------------------- 
    117117% 
    118 \forfile{../namelists/namage} 
     118\nlst{namage} 
    119119%---------------------------------------------------------------------------------------------------------- 
    120120 
     
    151151%------------------------------------------namage---------------------------------------------------- 
    152152% 
    153 \forfile{../namelists/namcfc} 
     153\nlst{namcfc} 
    154154%---------------------------------------------------------------------------------------------------------- 
    155155 
     
    324324\begin{figure}[!h] 
    325325\centering 
    326 \includegraphics[width=0.80\textwidth]{../Figures/CFC-atm-evol.png} 
     326\includegraphics[width=0.80\textwidth]{CFC-atm-evol} 
    327327  \caption{Atmospheric CFC11, CFC12 and SF6 partial pressure evolution in both hemispheres.} 
    328328\label{img_cfcatm} 
     
    331331\begin{figure}[!h] 
    332332\centering 
    333 \includegraphics[width=0.80\textwidth]{../Figures/CFC_solub.png} 
     333\includegraphics[width=0.80\textwidth]{CFC_solub} 
    334334  \caption{CFC11 solubility in mol m$^{-3}$ pptv$^{-1}$, calculated from the World Ocean Atlas 2013 temperature and salinity annual climatology.} 
    335335\label{img_cfcsol} 
     
    338338\begin{figure}[!h] 
    339339\centering 
    340 \includegraphics[width=0.80\textwidth]{../Figures/CFC_inventory.png} 
     340\includegraphics[width=0.80\textwidth]{CFC_inventory} 
    341341  \caption{CFC11 vertical inventory in $\mu$mol m$^{-2}$, from one of the UK Earth System Model 1 model (UKESM1 - which uses NEMO as ocean component, with TOP for the passive tracers) historical run at year 2000.} 
    342342\label{img_cfcinv} 
     
    348348%------------------------------------------namage---------------------------------------------------- 
    349349% 
    350 \forfile{../namelists/namc14} 
     350\nlst{namc14_fcg} 
     351\nlst{namc14_typ} 
     352\nlst{namc14_sbc} 
    351353%---------------------------------------------------------------------------------------------------------- 
    352354 
     
    444446\begin{figure}[!h] 
    445447\begin{center} 
    446 \includegraphics[width=0.9\hsize]{../Figures/drift-EXP06.png} 
     448\includegraphics[width=0.9\hsize]{drift-EXP06} 
    447449\end{center} 
    448450\vspace{-4ex} 
     
    456458\begin{figure}[!h] 
    457459\begin{center} 
    458 \includegraphics[width=0.9\hsize]{../Figures/C14bombCO2-NB.png} 
     460\includegraphics[width=0.9\hsize]{C14bombCO2-NB} 
    459461\end{center} 
    460462\vspace{-4ex} 
     
    485487\begin{figure}[!h] 
    486488\begin{center} 
    487 \includegraphics[width=0.9\hsize]{../Figures/PaleoCO2C14-NB.png} 
     489\includegraphics[width=0.9\hsize]{PaleoCO2C14-NB} 
    488490\end{center} 
    489491\vspace{-4ex} 
     
    591593 
    592594%------------------------------------------namtrc_sms---------------------------------------------------- 
    593 \forfile{../namelists/namdta_dyn} 
     595\nlst{namdta_dyn} 
    594596%------------------------------------------------------------------------------------------------------------- 
    595597 
  • NEMO/trunk/doc/latex/TOP/subfiles/model_setup.tex

    r10896 r11019  
    77\section{ Setting up a passive tracer configuration} 
    88%------------------------------------------namtrc_int---------------------------------------------------- 
    9 \forfile{../namelists/namtrc} 
     9\nlst{namtrc} 
    1010%------------------------------------------------------------------------------------------------------------- 
    1111 
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