Changeset 11522
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 20190910T12:21:20+02:00 (4 years ago)
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 NEMO/trunk/doc/latex/NEMO/main
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NEMO/trunk/doc/latex/NEMO/main/chapters.tex
r11170 r11522 1 \subfile{../subfiles/introduction} %% Introduction2 1 \subfile{../subfiles/chap_model_basics} 3 2 \subfile{../subfiles/chap_time_domain} %% Time discretisation (time stepping strategy) … … 15 14 \subfile{../subfiles/chap_misc} %% Miscellaneous topics 16 15 \subfile{../subfiles/chap_CONFIG} %% Predefined configurations 16 17 %% Not included 18 %\subfile{../subfiles/chap_model_basics_zstar} 19 %\subfile{../subfiles/chap_DIU} 20 %\subfile{../subfiles/chap_conservation} 
NEMO/trunk/doc/latex/NEMO/main/definitions.tex
r11433 r11522 2 2 \def \engine{NEMO} 3 3 4 %% Title and cover page settings4 %% Cover page settings 5 5 \def \spacetop{ \vspace*{1.85cm} } 6 6 \def \heading{NEMO ocean engine} 7 \def \subheading{}7 %\def \subheading{} 8 8 \def \spacedown{ \vspace*{0.75cm } } 9 \def \authorswidth{ 0.3\linewidth}9 \def \authorswidth{ 0.3\linewidth} 10 10 \def \rulelenght{270pt} 11 11 \def \abstractwidth{0.6\linewidth} 12 12 13 %% Color for document(frontpage banner, links and chapter boxes)14 \def \set color{ \definecolor{manualcolor}{cmyk}{1, .60, 0, .40} }13 %% Manual color (frontpage banner, links and chapter boxes) 14 \def \setmanualcolor{ \definecolor{manualcolor}{cmyk}{1, .60, 0, .40} } 15 15 16 16 %% IPSL publication number 
NEMO/trunk/doc/latex/NEMO/main/introduction.tex
r11436 r11522 1 \documentclass[../main/NEMO_manual]{subfiles}2 1 3 %% Remove section heading (no section here) 4 \rehead{} 2 \chapter*{Introduction} 5 3 6 \begin{document} 4 %\chaptertoc 7 5 8 % ================================================================ 9 % INTRODUCTION 10 % ================================================================ 6 %\paragraph{Changes record} ~\\ 11 7 12 \chapter{Introduction}8 %\thispagestyle{plain} 13 9 14 The Nucleus for European Modelling of the Ocean (\NEMO) is a framework of ocean related engines, 15 namely OPA \footnote{OPA: Oc\'{e}an PArall\'{e}lis\'{e} (french)} for the ocean dynamics and thermodynamics, 16 SI$^3$ \footnote{SI$^3$: SeaIce modelling Integrated Initiative} for the seaice dynamics and thermodynamics, 17 TOP \footnote{TOP: Tracer in the Ocean Paradigm} for the biogeochemistry 18 (both transport (TRP) and sources minus sinks 19 (PISCES \footnote{PISCES: Pelagic Interactions Scheme for Carbon and Ecosystem Studies})). 20 It is intended to be a flexible tool for studying the ocean and its interactions with the other components of 21 the earth climate system (atmosphere, seaice, biogeochemical tracers, ...) over 22 a wide range of space and time scales. 10 %{\footnotesize 11 % \begin{tabularx}{\textwidth}{lXX} 12 % Release & Author(s) & Modifications \\ 13 % \hline 14 % {\em x.x} & {\em ...} & {\em ...} \\ 15 % {\em ...} & {\em ...} & {\em ...} \\ 16 % \end{tabularx} 17 %} 18 19 %\clearpage 20 21 The \textbf{N}ucleus for \textbf{E}uropean \textbf{M}odelling of the \textbf{O}cean (\NEMO) is 22 a framework of ocean related engines, namely the aforementioned for 23 the ocean dynamics and thermodynamics, 24 \SIcube \footnote{\textbf{S}ea\textbf{I}ce modelling \textbf{I}ntegrated \textbf{I}nitiative} 25 for the seaice dynamics and thermodynamics, 26 \TOP \footnote{\textbf{T}racer in the \textbf{O}cean \textbf{P}aradigm} for 27 the biogeochemistry (both transport and sources minus sinks 28 (\PISCES \footnote{ 29 \textbf{P}elagic \textbf{I}nteractions \textbf{S}cheme for 30 \textbf{C}arbon and \textbf{E}cosystem \textbf{S}tudies 31 } 32 )). 33 The ocean component has been developed from the legacy of 34 the \OPA \footnote{\textbf{O}c\'{e}an \textbf{PA}rall\'{e}lis\'{e} (French)} 35 model, described in \citet{madec.delecluse.ea_NPM98}. 36 This model has been used for a wide range of applications, both regional or global, 37 as a forced ocean model and as a model coupled with the seaice and/or the atmosphere. 38 23 39 This manual provides information about the physics represented by the ocean component of \NEMO\ and 24 40 the rationale for the choice of numerical schemes and the model design. 25 41 For the use of framework, 26 42 a guide which gathers the \texttt{README} files spread out in the source code can be build and 27 exported in web or printable format (see \path{./doc/rst}). 28 An online version of the guide is also available on the 29 \href{http://forge.ipsl.jussieu.fr/nemo}{\NEMO\ forge platform}. 43 exported in a web or printable format (see \path{./doc/rst}). 44 Also a online copy is available on the \href{http://forge.ipsl.jussieu.fr/nemo}{forge platform}. 30 45 31 The ocean component of \NEMO\ has been developed from the legacy of the OPA model, release 8.2, 32 described in \citet{madec.delecluse.ea_NPM98}. 33 This model has been used for a wide range of applications, both regional or global, as a forced ocean model and 34 as a model coupled with the seaice and/or the atmosphere. 46 %% ================================================================================================= 47 \section*{Manual outline} 35 48 36 This manual is organised in as follows. 37 \autoref{chap:PE} presents the model basics, \ie\ the equations and their assumptions, 38 the vertical coordinates used, and the subgrid scale physics. 39 This part deals with the continuous equations of the model 40 (primitive equations, with temperature, salinity and an equation of seawater). 49 \subsection*{Chapters} 50 51 The manual mirrors the organization of the model and it is organised in as follows: 52 after the presentation of the continuous equations 53 (primitive equations with temperature and salinity, and an equation of seawater) in the next chapter, 54 the following chapters refer to specific terms of the equations each associated with 55 a group of modules. 56 57 \begin{description} 58 \item [\nameref{chap:PE}] presents the equations and their assumptions, the vertical coordinates used, 59 and the subgrid scale physics. 41 60 The equations are written in a curvilinear coordinate system, with a choice of vertical coordinates 42 61 ($z$, $s$, \zstar, \sstar, \ztilde, \stilde, and a mix of them). 43 62 Momentum equations are formulated in vector invariant or flux form. 44 63 Dimensional units in the meter, kilogram, second (MKS) international system are used throughout. 45 46 64 The following chapters deal with the discrete equations. 47 \autoref{chap:STP} presents the time domain. 48 The model time stepping environment is a three level scheme in which 49 the tendency terms of the equations are evaluated either centered in time, or forward, or backward depending of 50 the nature of the term. 51 \autoref{chap:DOM} presents the space domain. 52 The model is discretised on a staggered grid (Arakawa C grid) with masking of land areas. 65 \item [\nameref{chap:STP}] presents the model time stepping environment. 66 it is a three level scheme in which the tendency terms of the equations are evaluated either 67 centered in time, or forward, or backward depending of the nature of the term. 68 \item [\nameref{chap:DOM}] presents the model \textbf{DOM}ain. 69 It is discretised on a staggered grid (Arakawa C grid) with masking of land areas. 53 70 Vertical discretisation used depends on both how the bottom topography is represented and whether 54 71 the free surface is linear or not. 55 Full step or partial step $z$coordinate or $s$ (terrainfollowing) coordinate is used with linear free surface 56 (level position are then fixed in time). 57 In nonlinear free surface, the corresponding rescaled height coordinate formulation (\zstar or \sstar) is used 72 Full step or partial step $z$coordinate or $s$ (terrainfollowing) coordinate is used with 73 linear free surface (level position are then fixed in time). 74 In nonlinear free surface, the corresponding rescaled height coordinate formulation 75 (\zstar or \sstar) is used 58 76 (the level position then vary in time as a function of the sea surface heigh). 59 The following two chapters (\autoref{chap:TRA} and \autoref{chap:DYN}) describe the discretisation of 60 the prognostic equations for the active tracers and the momentum. 77 \item [\nameref{chap:TRA} and \nameref{chap:DYN}] describe the discretisation of 78 the prognostic equations for the active \textbf{TRA}cers (potential temperature and salinity) and 79 the momentum (\textbf{DYN}amic). 61 80 Explicit, splitexplicit and filtered free surface formulations are implemented. 62 81 A number of numerical schemes are available for momentum advection, 63 82 for the computation of the pressure gradients, as well as for the advection of tracers 64 83 (second or higher order advection schemes, including positive ones). 65 66 Surface boundary conditions (\autoref{chap:SBC}) can be implemented as prescribed fluxes, or bulk formulations for 67 the surface fluxes (wind stress, heat, freshwater). 84 \item [\nameref{chap:SBC}] can be implemented as prescribed fluxes, 85 or bulk formulations for the surface fluxes (wind stress, heat, freshwater). 68 86 The model allows penetration of solar radiation. 69 87 There is an optional geothermal heating at the ocean bottom. 70 Within the \NEMO\ system the ocean model is interactively coupled with a sea ice model (SI$^3$) and 71 a biogeochemistry model (PISCES). 72 Interactive coupling to Atmospheric models is possible via the \href{https://portal.enes.org/oasis}{OASIS coupler}. 73 Twoway nesting is also available through an interface to the AGRIF package 74 (Adaptative Grid Refinement in \fortran) \citep{debreu.vouland.ea_CG08}. 75 % Needs to be reviewed 76 %The interface code for coupling to an alternative sea ice model (CICE, \citet{Hunke2008}) has now been upgraded so 77 %that it works for both global and regional domains, although AGRIF is still not available. 78 79 Other model characteristics are the lateral boundary conditions (\autoref{chap:LBC}). 80 Global configurations of the model make use of the ORCA tripolar grid, with special north fold boundary condition. 88 Within the \NEMO\ system the ocean model is interactively coupled with 89 a sea ice model (\SIcube) and a biogeochemistry model (\PISCES). 90 Interactive coupling to Atmospheric models is possible via the \OASIS\ coupler. 91 Twoway nesting is also available through an interface to the \AGRIF\ package, 92 \ie\ \textbf{A}daptative \textbf{G}rid \textbf{R}efinement in \textbf{F}ortran 93 \citep{debreu.vouland.ea_CG08}. 94 The interface code for coupling to an alternative sea ice model (\CICE) has now been upgraded so that 95 it works for both global and regional domains. 96 \item [\nameref{chap:LBC}] presents the \textbf{L}ateral 97 \textbf{B}oun\textbf{D}ar\textbf{Y} \textbf{C}onditions. 98 Global configurations of the model make use of the ORCA tripolar grid, 99 with special north fold boundary condition. 81 100 Freeslip or noslip boundary conditions are allowed at land boundaries. 82 101 Closed basin geometries as well as periodic domains and open boundary conditions are possible. 83 84 Physical parameterisations are described in \autoref{chap:LDF} and \autoref{chap:ZDF}. 102 \item [\nameref{chap:LDF} and \nameref{chap:ZDF}] describe the physical parameterisations 103 (\textbf{L}ateral \textbf{D}i\textbf{F}fusion and vertical \textbf{Z} \textbf{D}i\textbf{F}fusion) 85 104 The model includes an implicit treatment of vertical viscosity and diffusivity. 86 105 The lateral Laplacian and biharmonic viscosity and diffusion can be rotated following 87 106 a geopotential or neutral direction. 88 There is an optional eddy induced velocity \citep{gent.mcwilliams_JPO90} with a space and time variable coefficient89 \citet{treguier.held.ea_JPO97}.107 There is an optional eddy induced velocity \citep{gent.mcwilliams_JPO90} with 108 a space and time variable coefficient \citet{treguier.held.ea_JPO97}. 90 109 The model has vertical harmonic viscosity and diffusion with a space and time variable coefficient, 91 with options to compute the coefficients with \citet{blanke.delecluse_JPO93}, \citet{pacanowski.philander_JPO81}, or 92 \citet{umlauf.burchard_JMR03} mixing schemes. 110 with options to compute the coefficients with \citet{blanke.delecluse_JPO93}, 111 \citet{pacanowski.philander_JPO81}, or \citet{umlauf.burchard_JMR03} mixing schemes. 112 \item [\nameref{chap:DIA}] describes model \textbf{I}n\textbf{O}utputs \textbf{M}anagement and 113 specific online \textbf{DIA}gnostics. 114 The diagnostics includes the output of all the tendencies of the momentum and tracers equations, 115 the output of tracers \textbf{TR}en\textbf{D}s averaged over the time evolving mixed layer, 116 the output of the tendencies of the barotropic vorticity equation, 117 the computation of online \textbf{FLO}ats trajectories... 118 \item [\nameref{chap:OBS}] describes a tool which reads in \textbf{OBS}ervation files 119 (profile temperature and salinity, sea surface temperature, sea level anomaly and 120 sea ice concentration) and calculates an interpolated model equivalent value at 121 the observation location and nearest model timestep. 122 Originally developed of data assimilation, it is a fantastic tool for model and data comparison. 123 \item [\nameref{chap:ASM}] describes how increments produced by 124 data \textbf{A}s\textbf{S}i\textbf{M}ilation may be applied to the model equations. 125 \item [\nameref{chap:MISC}] (including solvers) 126 \item [\nameref{chap:CFG}] provides finally a brief introduction to 127 the predefined model configurations 128 (water column model \texttt{C1D}, ORCA and GYRE families of configurations). 129 \end{description} 93 130 94 %%gm To be put somewhere else .... 95 %%nm We should consider creating a glossary for all this kind of stuff (terms, acronyms and symbols) 96 %% http://en.wikibooks.org/wiki/LaTeX/Glossary 97 \noindent CPP keys and namelists are used as inputs to the code. 131 %% ================================================================================================= 132 \subsection*{Appendices} 98 133 99 \noindent \index{CPP keys} CPP keys 100 101 Some CPP keys are implemented in the \fortran code to allow code selection at compiling step. 102 This selection of code at compilation time reduces the reliability of the whole platform since 103 it changes the code from one set of CPP keys to the other. 104 It is used only when the addition/suppression of the part of code highly changes the amount of memory at run time. 105 Usual coding looks like: 106 107 \begin{forlines} 108 #if defined key_option1 109 ! This part of the \fortran code will be active 110 ! only if key_option1 is activated at compiling step 111 #endif 112 \end{forlines} 113 114 \noindent \index{Namelist} Namelists 115 116 The namelist allows to input variables (character, logical, real and integer) into the code. 117 There is one namelist file for each component of \NEMO\ (dynamics, seaice, biogeochemistry...) 118 containing all the \fortran namelists needed. 119 The implementation in \NEMO\ uses a 2step process. 120 For each \fortran namelist, two files are read: 121 122 \begin{enumerate} 123 \item 124 A reference namelist (in \path{./cfgs/SHARED/namelist_ref}) is read first. 125 This file contains all the namelist variables which are initialised to default values 126 \item 127 A configuration namelist (in \path{./cfgs/CFG_NAME/EXP00/namelist_cfg}) is read aferwards. 128 This file contains only the namelist variables which are changed from default values, and overwrites those. 129 \end{enumerate} 130 A template can be found in \path{NEMO/OPA_SRC/module.example}. 131 The effective namelist, taken in account during the run, is stored at execution time in 132 an \texttt{output\_namelist\_dyn} (or \texttt{\_ice} or \texttt{\_top}) file. 133 %%gm end 134 135 Model outputs management and specific online diagnostics are described in \autoref{chap:DIA}. 136 The diagnostics includes the output of all the tendencies of the momentum and tracers equations, 137 the output of tracers tendencies averaged over the time evolving mixed layer, 138 the output of the tendencies of the barotropic vorticity equation, 139 the computation of online floats trajectories... 140 \autoref{chap:OBS} describes a tool which reads in observation files 141 (profile temperature and salinity, sea surface temperature, sea level anomaly and sea ice concentration) 142 and calculates an interpolated model equivalent value at the observation location and nearest model timestep. 143 Originally developed of data assimilation, it is a fantastic tool for model and data comparison. 144 \autoref{chap:ASM} describes how increments produced by data assimilation may be applied to the model equations. 145 Finally, \autoref{chap:CFG} provides a brief introduction to the predefined model configurations 146 (water column model, ORCA and GYRE families of configurations). 147 148 %%nm: Add some words on the \NEMO\ dependencies 149 The model is implemented in \fninety, with preprocessing (C preprocessor). 150 It runs under UNIX. 151 It is optimized for vector computers and parallelised by domain decomposition with MPI. 152 All input and output is done in NetCDF (Network Common Data Format) with a optional direct access format for output. 153 To ensure the clarity and readability of the code it is necessary to follow coding rules. 154 The coding rules for OPA include conventions for naming variables, 155 with different starting letters for different types of variables (real, integer, parameter\ldots). 156 Those rules are briefly presented in \autoref{apdx:coding} and a more complete document is available . 157 158 The model is organized with a high internal modularity based on physics. 159 For example, each trend (\ie, a term in the RHS of the prognostic equation) for momentum and tracers 160 is computed in a dedicated module. 161 To make it easier for the user to find his way around the code, the module names follow a threeletter rule. 162 For example, \mdl{traldf} is a module related to the TRAcers equation, computing the Lateral DiFfussion. 163 %The complete list of module names is presented in \autoref{apdx:coding}. %====>>>> to be done ! 164 Furthermore, modules are organized in a few directories that correspond to their category, 165 as indicated by the first three letters of their name (\autoref{tab:chapters}). 166 167 The manual mirrors the organization of the model. 168 After the presentation of the continuous equations (\autoref{chap:PE}), 169 the following chapters refer to specific terms of the equations each associated with a group of modules 170 (\autoref{tab:chapters}). 171 172 %TABLE 173 \begin{table}[!t] 174 \caption{ 175 \protect\label{tab:chapters} 176 Organization of Chapters mimicking the one of the model directories. 177 } 178 \begin{center} 179 \begin{tabular}{lll} 180 \hline 181 \autoref{chap:STP} &  & model time STePping environment \\ 182 \hline 183 \autoref{chap:DOM} & DOM & model DOMain \\ 184 \hline 185 \autoref{chap:TRA} & TRA & TRAcer equations (potential temperature and salinity) \\ 186 \hline 187 \autoref{chap:DYN} & DYN & DYNamic equations (momentum) \\ 188 \hline 189 \autoref{chap:SBC} & SBC & Surface Boundary Conditions \\ 190 \hline 191 \autoref{chap:LBC} & LBC & Lateral Boundary Conditions (also OBC and BDY) \\ 192 \hline 193 \autoref{chap:LDF} & LDF & Lateral DiFfusion (parameterisations) \\ 194 \hline 195 \autoref{chap:ZDF} & ZDF & vertical (Z) DiFfusion (parameterisations) \\ 196 \hline 197 \autoref{chap:DIA} & DIA & I/O and DIAgnostics (also IOM, FLO and TRD) \\ 198 \hline 199 \autoref{chap:OBS} & OBS & OBServation and model comparison \\ 200 \hline 201 \autoref{chap:ASM} & ASM & ASsiMilation increment \\ 202 \hline 203 \autoref{chap:MISC} & SOL & Miscellaneous topics (including solvers) \\ 204 \hline 205 \autoref{chap:CFG} &  & predefined configurations (including C1D) \\ 206 \hline 207 \end{tabular} 208 \end{center} 209 \end{table} 210 % 211 212 %% nm: the following section has to vastly remodeled to focus only on wellidentified versions of \NEMO 213 %% (3.4, 3.6, 4.0 and further releases). Then its formatting must be improved too. 214 \subsubsection{Changes between releases} 215 216 \NEMO/OPA, like all research tools, is in perpetual evolution. 217 The present document describes the OPA version include in the release 3.4 of \NEMO. 218 This release differs significantly from version 8, documented in \citet{madec.delecluse.ea_NPM98}. \\ 219 220 The main modifications from OPA v8 and \NEMO/OPA v3.2 are : 221 222 \begin{itemize} 223 \item 224 transition to full native \fninety, deep code restructuring and drastic reduction of CPP keys; 225 \item 226 introduction of partial step representation of bottom topography 227 \citep{barnier.madec.ea_OD06, lesommer.penduff.ea_OM09, penduff.lesommer.ea_OS07}; 228 \item 229 partial reactivation of a terrainfollowing vertical coordinate ($s$ and hybrid $s$$z$) with 230 the addition of several options for pressure gradient computation 231 \footnote{ 232 Partial support of $s$coordinate: there is presently no support for neutral physics in 233 $s$coordinate and for the new options for horizontal pressure gradient computation with 234 a nonlinear equation of state. 235 } 236 ; 237 \item 238 more choices for the treatment of the free surface: full explicit, splitexplicit or filtered schemes, 239 and suppression of the rigidlid option; 240 \item 241 non linear free surface associated with the rescaled height coordinate \zstar or $s$; 242 \item 243 additional schemes for vector and flux forms of the momentum advection; 244 \item 245 additional advection schemes for tracers; 246 \item 247 implementation of the AGRIF package (Adaptative Grid Refinement in \fortran) \citep{debreu.vouland.ea_CG08}; 248 \item 249 online diagnostics : tracers trend in the mixed layer and vorticity balance; 250 \item 251 rewriting of the I/O management with the use of an I/O server; 252 \item 253 generalized oceaniceatmosphereCO2 coupling interface, interfaced with OASIS 3 coupler; 254 \item 255 surface module (SBC) that simplify the way the ocean is forced and include two bulk formulea (CLIO and CORE) and 256 which includes an onthefly interpolation of input forcing fields; 257 \item 258 RGB light penetration and optional use of ocean color 259 \item 260 major changes in the TKE schemes: it now includes a Langmuir cell parameterization \citep{axell_JGR02}, 261 the \citet{mellor.blumberg_JPO04} surface wave breaking parameterization, and has a time discretization which 262 is energetically consistent with the ocean model equations \citep{burchard_OM02, marsaleix.auclair.ea_OM08}; 263 \item 264 tidal mixing parametrisation (bottom intensification) + Indonesian specific tidal mixing 265 \citep{kochlarrouy.madec.ea_GRL07}; 266 \item 267 introduction of LIM3, the new LouvainlaNeuve seaice model 268 (Cgrid rheology and new thermodynamics including bulk ice salinity) 269 \citep{vancoppenolle.fichefet.ea_OM09*a, vancoppenolle.fichefet.ea_OM09*b} 270 \end{itemize} 271 272 The main modifications from \NEMO/OPA v3.2 and v3.3 are: 273 274 \begin{itemize} 275 \item 276 introduction of a modified leapfrogAsselin filter time stepping scheme 277 \citep{leclair.madec_OM09}; 278 \item 279 additional scheme for isoneutral mixing \citep{griffies.gnanadesikan.ea_JPO98}, although it is still a "work in progress"; 280 \item 281 a rewriting of the bottom boundary layer scheme, following \citet{campin.goosse_T99}; 282 \item 283 addition of a Generic Length Scale vertical mixing scheme, following \citet{umlauf.burchard_JMR03}; 284 \item 285 addition of the atmospheric pressure as an external forcing on both ocean and seaice dynamics; 286 \item 287 addition of a diurnal cycle on solar radiation \citep{bernie.guilyardi.ea_CD07}; 288 \item 289 river runoffs added through a nonzero depth, and having its own temperature and salinity; 290 \item 291 CORE II normal year forcing set as the default forcing of ORCA2LIM configuration; 292 \item 293 generalisation of the use of \mdl{fldread} for all input fields (ocean climatology, seaice damping...); 294 \item 295 addition of an online observation and model comparison (thanks to NEMOVAR project); 296 \item 297 optional application of an assimilation increment (thanks to NEMOVAR project); 298 \item 299 coupling interface adjusted for WRF atmospheric model; 300 \item 301 Cgrid ice rheology now available fro both LIM2 and LIM3 \citep{bouillon.maqueda.ea_OM09}; 302 \item 303 LIM3 iceocean momentum coupling applied to LIM2; 304 \item 305 a deep rewritting and simplification of the offline tracer component (OFF\_SRC); 306 \item 307 the merge of passive and active advection and diffusion modules; 308 \item 309 Use of the Flexible Configuration Manager (FCM) to build configurations, 310 generate the Makefile and produce the executable; 311 \item 312 Lineartangent and Adjoint component (TAM) added, phased with v3.0 313 \end{itemize} 314 315 \vspace{1cm} 316 317 In addition, several minor modifications in the coding have been introduced with the constant concern of 318 improving the model performance. 319 320 The main modifications from \NEMO/OPA v3.3 and v3.4 are: 321 322 \begin{itemize} 323 \item finalisation of above isoneutral mixing \citep{griffies.gnanadesikan.ea_JPO98}"; 324 \item "Neptune effect" parametrisation; 325 \item horizontal pressure gradient suitable for scoordinate; 326 \item semi implicit bottom friction; 327 \item finalisation of the merge of passive and active tracers advectiondiffusion modules; 328 \item a new bulk formulae (socalled MFS); 329 \item use fldread for the offline tracer component (OFF\_SRC); 330 \item use MPI point to point communications for north fold; 331 \item diagnostic of transport; 332 \end{itemize} 333 334 The main modifications from \NEMO/OPA v3.4 and v3.6 are: 335 336 \begin{itemize} 337 \item ...; 338 \end{itemize} 339 340 The main modifications from \NEMO/OPA v3.6 and v4.0 are: 341 342 \begin{itemize} 343 \item new definition of configurations; 344 \item bulk formulation; 345 \item \NEMOwave large scale interactions; 346 \item ...; 347 \end{itemize} 348 349 \biblio 350 351 \pindex 352 353 %% Restore section heading 354 \rehead{Sect.\ \thesection\ \rightmark} 355 356 \end{document} 134 \begin{description} 135 \item [\nameref{apdx:s_coord}] 136 \item [\nameref{apdx:diff_oper}] 137 \item [\nameref{apdx:invariants}] 138 \item [\nameref{apdx:triads}] 139 \item [\nameref{apdx:DOMAINcfg}] 140 \item [\nameref{apdx:coding}] 141 \end{description} 
NEMO/trunk/doc/latex/NEMO/main/thanks.tex
r11433 r11522 47 47 George Nurser \\ 48 48 \orcid{0000000174816369} Guillaume Samson \\ 49 Dave Storkey 49 Dave Storkey \\ 50 %% Don't forget the last break for the right alignment
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