Changeset 11571
- Timestamp:
- 2019-09-19T10:44:07+02:00 (5 years ago)
- Location:
- NEMO/trunk/doc/latex/NEMO/subfiles
- Files:
-
- 12 edited
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NEMO/trunk/doc/latex/NEMO/subfiles/apdx_DOMAINcfg.tex
r11567 r11571 359 359 % z-coordinate with constant thickness 360 360 % ------------------------------------------------------------------------------------------------------------- 361 \subsubsection[$Z$-coordinate with uniform thickness levels (\forcode{ln_zco = .true.})] 362 {$Z$-coordinate with uniform thickness levels (\protect\np{ln\_zco}\forcode{ = .true.})} 361 \subsubsection[$Z$-coordinate with uniform thickness levels (\forcode{ln_zco})]{$Z$-coordinate with uniform thickness levels (\protect\np{ln\_zco})} 363 362 \label{subsec:DOMCFG_zco} 364 363 … … 372 371 % z-coordinate with partial step 373 372 % ------------------------------------------------------------------------------------------------------------- 374 \subsubsection[$Z$-coordinate with partial step (\forcode{ln_zps = .true.})] 375 {$Z$-coordinate with partial step (\protect\np{ln\_zps}\forcode{ = .true.})} 373 \subsubsection[$Z$-coordinate with partial step (\forcode{ln_zps})]{$Z$-coordinate with partial step (\protect\np{ln\_zps})} 376 374 \label{subsec:DOMCFG_zps} 377 375 … … 403 401 % s-coordinate 404 402 % ------------------------------------------------------------------------------------------------------------- 405 \subsubsection[$S$-coordinate (\forcode{ln_sco = .true.})] 406 {$S$-coordinate (\protect\np{ln\_sco}\forcode{ = .true.})} 403 \subsubsection[$S$-coordinate (\forcode{ln_sco})]{$S$-coordinate (\protect\np{ln\_sco})} 407 404 \label{sec:DOMCFG_sco} 408 405 %------------------------------------------nam_zgr_sco--------------------------------------------------- … … 556 553 % z*- or s*-coordinate 557 554 % ------------------------------------------------------------------------------------------------------------- 558 \subsubsection[\zstar- or \sstar-coordinate (\forcode{ln_linssh = .false.})] 559 {\zstar- or \sstar-coordinate (\protect\np{ln\_linssh}\forcode{ = .false.})} 555 \subsubsection[\zstar- or \sstar-coordinate (\forcode{ln_linssh})]{\zstar- or \sstar-coordinate (\protect\np{ln\_linssh})} 560 556 \label{subsec:DOMCFG_zgr_star} 561 557 -
NEMO/trunk/doc/latex/NEMO/subfiles/apdx_triads.tex
r11561 r11571 22 22 \newpage 23 23 24 \section[Choice of \texttt{namtra\_ldf} namelist parameters] 25 {Choice of \protect\nam{tra\_ldf} namelist parameters} 24 \section[Choice of \forcode{namtra\_ldf} namelist parameters]{Choice of \protect\nam{tra\_ldf} namelist parameters} 26 25 %-----------------------------------------nam_traldf------------------------------------------------------ 27 26 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex
r11567 r11571 1330 1330 % NetCDF4 support 1331 1331 % ================================================================ 1332 \section[NetCDF4 support (\texttt{\textbf{key\_netcdf4}})] 1333 {NetCDF4 support (\protect\key{netcdf4})} 1332 \section[NetCDF4 support (\texttt{\textbf{key\_netcdf4}})]{NetCDF4 support (\protect\key{netcdf4})} 1334 1333 \label{sec:DIA_nc4} 1335 1334 … … 1450 1449 % Tracer/Dynamics Trends 1451 1450 % ------------------------------------------------------------------------------------------------------------- 1452 \section[Tracer/Dynamics trends (\texttt{namtrd})] 1453 {Tracer/Dynamics trends (\protect\nam{trd})} 1451 \section[Tracer/Dynamics trends (\forcode{&namtrd})]{Tracer/Dynamics trends (\protect\nam{trd})} 1454 1452 \label{sec:DIA_trd} 1455 1453 … … 1502 1500 % On-line Floats trajectories 1503 1501 % ------------------------------------------------------------------------------------------------------------- 1504 \section[FLO: On-Line Floats trajectories (\texttt{\textbf{key\_floats}})] 1505 {FLO: On-Line Floats trajectories (\protect\key{floats})} 1502 \section[FLO: On-Line Floats trajectories (\texttt{\textbf{key\_floats}})]{FLO: On-Line Floats trajectories (\protect\key{floats})} 1506 1503 \label{sec:DIA_FLO} 1507 1504 %--------------------------------------------namflo------------------------------------------------------- … … 1609 1606 % Harmonic analysis of tidal constituents 1610 1607 % ------------------------------------------------------------------------------------------------------------- 1611 \section[Harmonic analysis of tidal constituents (\texttt{\textbf{key\_diaharm}})] 1612 {Harmonic analysis of tidal constituents (\protect\key{diaharm})} 1608 \section[Harmonic analysis of tidal constituents (\texttt{\textbf{key\_diaharm}})]{Harmonic analysis of tidal constituents (\protect\key{diaharm})} 1613 1609 \label{sec:DIA_diag_harm} 1614 1610 … … 1661 1657 % Sections transports 1662 1658 % ------------------------------------------------------------------------------------------------------------- 1663 \section[Transports across sections (\texttt{\textbf{key\_diadct}})] 1664 {Transports across sections (\protect\key{diadct})} 1659 \section[Transports across sections (\texttt{\textbf{key\_diadct}})]{Transports across sections (\protect\key{diadct})} 1665 1660 \label{sec:DIA_diag_dct} 1666 1661 … … 1988 1983 % Other Diagnostics 1989 1984 % ------------------------------------------------------------------------------------------------------------- 1990 \section[Other diagnostics] 1991 {Other diagnostics} 1985 \section{Other diagnostics} 1992 1986 \label{sec:DIA_diag_others} 1993 1987 … … 1995 1989 The available ready-to-add diagnostics modules can be found in directory DIA. 1996 1990 1997 \subsection[Depth of various quantities (\textit{diahth.F90})] 1998 {Depth of various quantities (\protect\mdl{diahth})} 1991 \subsection[Depth of various quantities (\textit{diahth.F90})]{Depth of various quantities (\protect\mdl{diahth})} 1999 1992 2000 1993 Among the available diagnostics the following ones are obtained when defining the \key{diahth} CPP key: … … 2031 2024 % CMIP specific diagnostics 2032 2025 % ----------------------------------------------------------- 2033 \subsection[CMIP specific diagnostics (\textit{diaar5.F90}, \textit{diaptr.F90})] 2034 {CMIP specific diagnostics (\protect\mdl{diaar5})} 2026 \subsection[CMIP specific diagnostics (\textit{diaar5.F90}, \textit{diaptr.F90})]{CMIP specific diagnostics (\protect\mdl{diaar5})} 2035 2027 2036 2028 A series of diagnostics has been added in the \mdl{diaar5} and \mdl{diaptr}. -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_DOM.tex
r11567 r11571 388 388 % Domain: Horizontal Grid (mesh) 389 389 % ================================================================ 390 \subsection {Horizontal grid mesh (\protect\mdl{domhgr})}390 \subsection[Horizontal grid mesh (\textit{domhgr.F90}]{Horizontal grid mesh (\protect\mdl{domhgr})} 391 391 \label{subsec:DOM_hgr} 392 392 … … 457 457 % Domain: Vertical Grid (domzgr) 458 458 % ================================================================ 459 \subsection[Vertical grid (\textit{domzgr.F90})] 460 {Vertical grid (\protect\mdl{domzgr})} 459 \subsection[Vertical grid (\textit{domzgr.F90})]{Vertical grid (\protect\mdl{domzgr})} 461 460 \label{subsec:DOM_zgr} 462 461 %-----------------------------------------namdom------------------------------------------- … … 624 623 % Closed seas 625 624 %------------------------------------------------------------------------------------------------- 626 \subsection{Closed seas} \label{subsec:DOM_closea} 625 \subsection{Closed seas} 626 \label{subsec:DOM_closea} 627 627 628 628 When a global ocean is coupled to an atmospheric model it is better to represent all large water bodies … … 667 667 % Domain: Initial State (dtatsd & istate) 668 668 % ================================================================ 669 \section[Initial state (\textit{istate.F90} and \textit{dtatsd.F90})] 670 {Initial state (\protect\mdl{istate} and \protect\mdl{dtatsd})} 669 \section[Initial state (\textit{istate.F90} and \textit{dtatsd.F90})]{Initial state (\protect\mdl{istate} and \protect\mdl{dtatsd})} 671 670 \label{sec:DOM_DTA_tsd} 672 671 %-----------------------------------------namtsd------------------------------------------- -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_DYN.tex
r11567 r11571 1096 1096 % Filtered free surface formulation 1097 1097 %-------------------------------------------------------------------------------------------------------------- 1098 \subsection [Filtered free surface (\forcode{dynspg_flt?})]{Filtered free surface (\protect\texttt{dynspg\_flt?})}1098 \subsection{Filtered free surface (\forcode{dynspg_flt?})} 1099 1099 \label{subsec:DYN_spg_fltp} 1100 1100 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_LBC.tex
r11567 r11571 239 239 % Exchange with neighbouring processors 240 240 % ==================================================================== 241 \section[Exchange with neighbouring processors (\textit{lbclnk.F90}, \textit{lib\_mpp.F90})] 242 {Exchange with neighbouring processors (\protect\mdl{lbclnk}, \protect\mdl{lib\_mpp})} 241 \section[Exchange with neighbouring processors (\textit{lbclnk.F90}, \textit{lib\_mpp.F90})]{Exchange with neighbouring processors (\protect\mdl{lbclnk}, \protect\mdl{lib\_mpp})} 243 242 \label{sec:LBC_mpp} 244 243 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_SBC.tex
r11567 r11571 723 723 % Ocean-Atmosphere Bulk formulae 724 724 % ------------------------------------------------------------------------------------------------------------- 725 \subsection[Ocean-Atmosphere Bulk formulae (\textit{sbcblk\_algo\_coare.F90, sbcblk\_algo\_coare3p5.F90, 726 sbcblk\_algo\_ecmwf.F90, sbcblk\_algo\_ncar.F90})]{Ocean-Atmosphere Bulk formulae (\mdl{sbcblk\_algo\_coare}, \mdl{sbcblk\_algo\_coare3p5}, 727 \mdl{sbcblk\_algo\_ecmwf}, \mdl{sbcblk\_algo\_ncar})} 725 \subsection[Ocean-Atmosphere Bulk formulae (\textit{sbcblk\_algo\_coare.F90, sbcblk\_algo\_coare3p5.F90, sbcblk\_algo\_ecmwf.F90, sbcblk\_algo\_ncar.F90})]{Ocean-Atmosphere Bulk formulae (\mdl{sbcblk\_algo\_coare}, \mdl{sbcblk\_algo\_coare3p5}, \mdl{sbcblk\_algo\_ecmwf}, \mdl{sbcblk\_algo\_ncar})} 728 726 \label{subsec:SBC_blk_ocean} 729 727 … … 1375 1373 % 3D Stokes Drift (ln_sdw, nn_sdrift) 1376 1374 % ---------------------------------------------------------------- 1377 \subsection[3D Stokes Drift (\ texttt{ln\_sdw}, \forcode{nn_sdrift})]{3D Stokes Drift (\protect\np{ln\_sdw, nn\_sdrift})}1375 \subsection[3D Stokes Drift (\forcode{ln_sdw}, \forcode{nn_sdrift})]{3D Stokes Drift (\protect\np{ln\_sdw, nn\_sdrift})} 1378 1376 \label{subsec:SBC_wave_sdw} 1379 1377 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_TRA.tex
r11567 r11571 597 597 %&& Triad rotated (bi-)laplacian operator 598 598 %&& ------------------------------------------- 599 \subsubsection[Triad rotated (bi-)laplacian operator (\ textit{ln\_traldf\_triad})]{Triad rotated (bi-)laplacian operator (\protect\np{ln\_traldf\_triad})}599 \subsubsection[Triad rotated (bi-)laplacian operator (\forcode{ln_traldf_triad})]{Triad rotated (bi-)laplacian operator (\protect\np{ln\_traldf\_triad})} 600 600 \label{subsec:TRA_ldf_triad} 601 601 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_ZDF.tex
r11567 r11571 896 896 % Bottom Friction 897 897 % ================================================================ 898 \section[Bottom and top friction (\textit{zdfdrg.F90})] 898 \section[Bottom and top friction (\textit{zdfdrg.F90})]{Bottom and top friction (\protect\mdl{zdfdrg})} 899 899 \label{sec:ZDF_drg} 900 900 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_cfgs.tex
r11567 r11571 38 38 % 1D model configuration 39 39 % ================================================================ 40 \section[C1D: 1D Water column model (\texttt{\textbf{key\_c1d}})] 41 {C1D: 1D Water column model (\protect\key{c1d})} 40 \section[C1D: 1D Water column model (\texttt{\textbf{key\_c1d}})]{C1D: 1D Water column model (\protect\key{c1d})} 42 41 \label{sec:CFGS_c1d} 43 42 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_misc.tex
r11567 r11571 121 121 % Closed seas 122 122 % ================================================================ 123 \section[Closed seas (\textit{closea.F90})] 124 {Closed seas (\protect\mdl{closea})} 123 \section[Closed seas (\textit{closea.F90})]{Closed seas (\protect\mdl{closea})} 125 124 \label{sec:MISC_closea} 126 125 … … 255 254 % Accuracy and Reproducibility 256 255 % ================================================================ 257 \section[Accuracy and reproducibility (\textit{lib\_fortran.F90})] 258 {Accuracy and reproducibility (\protect\mdl{lib\_fortran})} 256 \section[Accuracy and reproducibility (\textit{lib\_fortran.F90})]{Accuracy and reproducibility (\protect\mdl{lib\_fortran})} 259 257 \label{sec:MISC_fortran} 260 258 261 \subsection[Issues with intrinsinc SIGN function (\texttt{\textbf{key\_nosignedzero}})] 262 {Issues with intrinsinc SIGN function (\protect\key{nosignedzero})} 259 \subsection[Issues with intrinsinc SIGN function (\texttt{\textbf{key\_nosignedzero}})]{Issues with intrinsinc SIGN function (\protect\key{nosignedzero})} 263 260 \label{subsec:MISC_sign} 264 261 -
NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics_zstar.tex
r11561 r11571 73 73 % Surface Pressure Gradient and Sea Surface Height 74 74 % ================================================================ 75 \section[Surface pressure gradient and sea surface heigth (\textit{dynspg.F90})] 76 {Surface pressure gradient and sea surface heigth (\protect\mdl{dynspg})} 75 \section[Surface pressure gradient and sea surface heigth (\textit{dynspg.F90})]{Surface pressure gradient and sea surface heigth (\protect\mdl{dynspg})} 77 76 \label{sec:MBZ_dyn_hpg_spg} 78 77 %-----------------------------------------nam_dynspg---------------------------------------------------- … … 98 97 % Explicit 99 98 %------------------------------------------------------------- 100 \subsubsection[Explicit (\texttt{\textbf{key\_dynspg\_exp}})] 101 {Explicit (\protect\key{dynspg\_exp})} 99 \subsubsection[Explicit (\texttt{\textbf{key\_dynspg\_exp}})]{Explicit (\protect\key{dynspg\_exp})} 102 100 \label{subsec:MBZ_dyn_spg_exp} 103 101 … … 135 133 % Split-explicit time-stepping 136 134 %------------------------------------------------------------- 137 \subsubsection[Split-explicit time-stepping (\texttt{\textbf{key\_dynspg\_ts}})] 138 {Split-explicit time-stepping (\protect\key{dynspg\_ts})} 135 \subsubsection[Split-explicit time-stepping (\texttt{\textbf{key\_dynspg\_ts}})]{Split-explicit time-stepping (\protect\key{dynspg\_ts})} 139 136 \label{subsec:MBZ_dyn_spg_ts} 140 137 %--------------------------------------------namdom---------------------------------------------------- … … 293 290 % Filtered formulation 294 291 %------------------------------------------------------------- 295 \subsubsection[Filtered formulation (\texttt{\textbf{key\_dynspg\_flt}})] 296 {Filtered formulation (\protect\key{dynspg\_flt})} 292 \subsubsection[Filtered formulation (\texttt{\textbf{key\_dynspg\_flt}})]{Filtered formulation (\protect\key{dynspg\_flt})} 297 293 \label{subsec:MBZ_dyn_spg_flt} 298 294 … … 308 304 % Non-linear free surface formulation 309 305 %------------------------------------------------------------- 310 \subsection[Non-linear free surface formulation (\texttt{\textbf{key\_vvl}})] 311 {Non-linear free surface formulation (\protect\key{vvl})} 306 \subsection[Non-linear free surface formulation (\texttt{\textbf{key\_vvl}})]{Non-linear free surface formulation (\protect\key{vvl})} 312 307 \label{subsec:MBZ_dyn_spg_vvl} 313 308
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