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Changeset 15428 – NEMO

Changeset 15428


Ignore:
Timestamp:
2021-10-21T15:25:37+02:00 (10 months ago)
Author:
aumont
Message:

update on the namelist and xml files

Location:
NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs
Files:
4 edited

Legend:

Unmodified
Added
Removed
  • NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_pisces_cfg

    r12377 r15428  
    8686   ln_ironice  =  .true.   ! boolean for Fe input from sea ice 
    8787   ln_hydrofe  =  .true.   ! boolean for from hydrothermal vents 
     88   ln_dust_inp =  .true.   ! boolean for dust input 
    8889/ 
    8990!----------------------------------------------------------------------- 
  • NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/field_def_nemo-pisces.xml

    r15076 r15428  
    168168       <field id="FlxPOS"      long_name="POS burial rate"                         unit="g/cm2/s"     /> 
    169169       <field id="Flxtot"      long_name="total burial flux"                       unit="g/cm2/s"     /> 
     170       <field id="Rstepros"    long_name="Number of iterations"                    unit="-"     /> 
    170171  </field_group> 
    171172 
  • NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/namelist_pisces_ref

    r15284 r15428  
    6767   concnnh4   =  1.E-6    ! NH4 half saturation for phyto 
    6868   concdnh4   =  3.E-6    ! NH4 half saturation for diatoms 
    69    concnfer   =  3.E-9    ! Iron half saturation for phyto 
    70    concdfer   =  9.E-9    ! Iron half saturation for diatoms 
     69   concnfer   =  1.7E-9   ! Iron half saturation for phyto 
     70   concdfer   =  5.E-9    ! Iron half saturation for diatoms 
    7171   concbfe    =  3.E-11   ! Iron half-saturation for DOC remin. 
    7272   concbnh4   =  3.E-7    ! NH4 half saturation for DOC remin. 
     
    7979   xksi2      =  20E-6    ! half saturation constant for Si/C 
    8080   xkdoc      =  417.E-6  ! half-saturation constant of DOC remineralization 
    81    qnfelim    =  9.E-6    ! Optimal quota of phyto 
    82    qdfelim    =  9.E-6    ! Optimal quota of diatoms 
     81   qnfelim    =  10.E-6   ! Optimal quota of phyto 
     82   qdfelim    =  10.E-6   ! Optimal quota of diatoms 
    8383   caco3r     =  0.2      ! mean rain ratio 
    8484   oxymin     =  1.E-6    ! Half-saturation constant for anoxia 
     
    9696   concppo4   =  7E-7     ! PO4 half saturation for picophytoplankton 
    9797   concdpo4   =  3E-6     ! PO4 half saturation for diatoms 
    98    concnfer   =  6E-9     ! Iron half saturation for phyto 
    99    concpfer   =  2E-9     ! Iron half saturation for picophytoplankton 
    100    concdfer   =  9E-9     ! Iron half saturation for diatoms 
     98   concnfer   =  3E-9     ! Iron half saturation for phyto 
     99   concpfer   =  1E-9     ! Iron half saturation for picophytoplankton 
     100   concdfer   =  4.5E-9   ! Iron half saturation for diatoms 
    101101   concbfe    =  3E-11    ! Half-saturation for Fe limitation of Bacteria 
    102102   concbnh4   =  4.E-7    ! NH4 half saturation for phyto 
     
    112112   xksi2      =  20E-6    ! half saturation constant for Si/C 
    113113   xkdoc      =  417.E-6  ! half-saturation constant of DOC remineralization 
    114    caco3r     =  0.5      ! mean rain ratio 
     114   caco3r     =  0.3      ! mean rain ratio 
    115115   oxymin     =  1.E-6    ! Half-saturation constant for anoxia 
    116116/ 
     
    118118&namp5zquota   !   parameters for nutrient limitations PISCES quota    - ln_p5z 
    119119!----------------------------------------------------------------------- 
    120    qfnopt     =  10.E-6   ! Optimal Fe quota of nanophyto 
    121    qfpopt     =  10.E-6   ! Optimal Fe quota of picophyto 
    122    qfdopt     =  10.E-6   ! Optimal quota of diatoms 
     120   qfnopt     =  12.E-6   ! Optimal Fe quota of nanophyto 
     121   qfpopt     =  12.E-6   ! Optimal Fe quota of picophyto 
     122   qfdopt     =  12.E-6   ! Optimal quota of diatoms 
    123123   qnnmin     =  0.61     ! Minimal N quota for nano 
    124124   qnnmax     =  1.25     ! Maximal N quota for nano 
     
    151151&namp4zprod    !   parameters for phytoplankton growth for PISCES std  - ln_p4z 
    152152!----------------------------------------------------------------------- 
    153    pislopen   =  2.5      ! P-I slope 
    154    pisloped   =  2.5      ! P-I slope  for diatoms 
     153   pislopen   =  2.       ! P-I slope 
     154   pisloped   =  2.       ! P-I slope  for diatoms 
    155155   xadap      =  0.       ! Adaptation factor to low light 
    156156   excretn    =  0.05     ! excretion ratio of phytoplankton 
     
    292292   xprefn     =  1.0      ! Microzoo preference for Nanophyto 
    293293   xprefp     =  1.0      ! Microzoo preference for picophyto 
    294    xprefd     =  0.8      ! Microzoo preference for Diatoms 
     294   xprefd     =  1.0      ! Microzoo preference for Diatoms 
    295295   xprefz     =  0.       ! Microzoo preference for microzooplankton 
    296296   xthreshdia =  1.E-8    ! Diatoms feeding threshold for microzooplankton 
     
    365365   ln_ironice  =  .false.   ! boolean for Fe input from sea ice 
    366366   ln_hydrofe  =  .false.   ! boolean for from hydrothermal vents 
     367   ln_dust_inp =  .false.   ! boolean for dust input 
    367368   sedfeinput  =  2.e-9    ! Coastal release of Iron 
    368369   distcoast   =  5.e3     ! Distance off the coast for Iron from sediments 
  • NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/namelist_sediment_ref

    r15076 r15428  
    1313!----------------------------------------------------------------------- 
    1414  ln_sed_2way = .false.  ! 2 way coupling with pisces 
     15  nrosorder   = 3        ! Order of the rosenbrock methode (3,4) 
     16  rosatol     = 1.E-4    ! Tolerance for the absolute error 
     17  rosrtol     = 1.E-4    ! Tolerance for the relative error 
    1518/ 
    1619!----------------------------------------------------------------------- 
     
    8083   seddiag2d(20)  = 'Flxtot     ' , 'Total burial flux                      ',  'mol/cm2/s' 
    8184   seddiag2d(21)  = 'dzdep      ' , 'Sedimentation rate                     ',  'cm/s' 
     85   seddiag2d(22)  = 'Rstepros   ' , 'Number of iterations                   ',  '-' 
    8286/ 
    8387!----------------------------------------------------------------------- 
    8488&nam_inorg     !   Inorganic chemistry in sediments (CacO3, Si) 
    8589!----------------------------------------------------------------------- 
    86    rcopal   =  0.1      ! Reactivity for clay  [l.mol-1.an-1] 
    87    dcoef    =  8.0E-6   ! Diffusion coefficient in sediments (in cm**2/s) 
    88    rccal    =  1.4      ! Dissolution rate of calcite [in yr-1] 
     90   rcopal   =  1.25     ! Reactivity for clay  [l.mol-1.an-1] 
     91   rccal    =  0.1      ! Dissolution rate of calcite [in yr-1] 
    8992   rcligc   =  0.1      ! Degradation rate of ligands [in yr-1] 
    9093   ratligc  =  1.E-4    ! L/C ratio in POC 
     
    9396&nam_poc     !   parameters for the redox reactions of the sediment module 
    9497!----------------------------------------------------------------------- 
    95    redO2    =  140.    ! Redfield coef for Oxygen 
     98   redO2    =  138.    ! Redfield coef for Oxygen 
    9699   redNo3   =  16.     ! Redfield coef for Nitrate 
    97100   redPo4   =  1.      ! Redfield coef for Phosphate 
    98    redC     =  122.    ! Redfield coef for Carbon 
     101   redC     =  117.    ! Redfield coef for Carbon 
    99102   redfep   =  0.05    ! Ration of Fe bound P 
    100103   rcorgl   =  10.     ! Reactivity for labile POC [an-1] 
     
    102105   rcorgr   =  1.E-4   ! Reactivity for refractory POC [an-1] 
    103106   rcnh4    =  1E7     ! Reactivity for O2/NH4 [l.mol-1.an-1] 
    104    rch2s    =  1E7     ! Reactivity for O2/H2S [l.mol-1.an-1] 
    105    rcfe2    =  1E9     ! Reactivity for O2/Fe2+ [l.mol-1.an-1] 
     107   rch2s    =  1E8     ! Reactivity for O2/H2S [l.mol-1.an-1] 
     108   rcfe2    =  5E8     ! Reactivity for O2/Fe2+ [l.mol-1.an-1] 
    106109   rcfeh2s  =  1E4     ! Reactivity for FEOH/H2S [l.mol-1.an-1] 
    107110   rcfeso   =  2E6     ! Reactivity for FES/O2 [l.mol-1.an-1] 
    108    rcfesp   =  5E-6    ! Precipitation of FeS [mol.l-1.an-1] 
     111   rcfesp   =  1E-4    ! Precipitation of FeS [mol.l-1.an-1] 
    109112   rcfesd   =  1.E-3   ! Dissolution of FeS [an-1] 
    110113   xksedo2  =  1.E-6   ! Half-saturation constant for oxic remin [mol/l] 
    111    xksedno3 =  5.E-6  ! Half-saturation constant for denitrification [mol/l]  
    112    xksedfeo =  0.007   ! Half-saturation constant for iron remin [%] 
    113    xksedso4 =  2E-3    ! Half-saturation constant for SO4 remin [mol/l] 
     114   xksedno3 =  5.E-6   ! Half-saturation constant for denitrification [mol/l]  
     115   xksedfeo =  0.006   ! Half-saturation constant for iron remin [%] 
     116   xksedso4 =  5E-4    ! Half-saturation constant for SO4 remin [mol/l] 
    114117/ 
    115118!----------------------------------------------------------------------- 
     
    118121   dbiot       =  8.        ! Bioturbation coefficient (in cm2/yr) 
    119122   ln_btbz     =  .true.    ! Depth varying bioturbation  
    120    dbtbzsc     =  4.0       ! coefficient for btb attenuation. If no variation, depth of the mixed layer 
     123   dbtbzsc     =  5.0       ! coefficient for btb attenuation. If no variation, depth of the mixed layer 
    121124   adsnh4      =  4.16      ! Adsorption coefficient of NH4 
    122    adsfe2      =  0.0       ! Adsorption coefficient of Fe2 
     125   adsfe2      =  697.0     ! Adsorption coefficient of Fe2 
    123126   ln_irrig    =  .true.    ! Bioirrigation in sediment 
    124    xirrzsc     =  1.5       ! Vertical scale of the attentuation of bioirrigation [cm] 
     127   xirrzsc     =  2.0       ! Vertical scale of the attentuation of bioirrigation [cm] 
    125128/  
    126129!----------------------------------------------------------------------- 
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